BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10921
(269 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9H3H1|MOD5_HUMAN tRNA dimethylallyltransferase, mitochondrial OS=Homo sapiens
GN=TRIT1 PE=1 SV=1
Length = 467
Score = 148 bits (374), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 120/224 (53%), Gaps = 35/224 (15%)
Query: 11 HLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEF 70
H + VLD+RL+ RV M+ GL+EEL FHR+YN+ + + +
Sbjct: 230 HADQAVLDERLDKRVDDMLAAGLLEELRDFHRRYNQKNVSENSQ---------------- 273
Query: 71 HNYLMLSDQDRQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLAN 130
DY GIFQSIGFKEFH YL +++ + ++ K ++AL
Sbjct: 274 --------------DYQHGIFQSIGFKEFHEYL-ITEGKCTLETSNQLLKKGIEALKQVT 318
Query: 131 VQYAKKQNQWVRNRLLKCPDRMVPPVYSLNCTDLTTWAQSVTAPALHIVQSYLDNRAPTG 190
+YA+KQN+WV+NR L P +VPPVY L +D++ W +SV PAL IVQS++ PT
Sbjct: 319 KRYARKQNRWVKNRFLSRPGPIVPPVYGLEVSDVSKWEESVLEPALEIVQSFIQGHKPTA 378
Query: 191 IEPLAQEYVDPSYYNAGTFN-CDVCNRLFIGQHQYEQHMNSVKH 233
P+ Y + N +++ CD+C+R+ IG ++ H+ S H
Sbjct: 379 T-PIKMPYNEAE--NKRSYHLCDLCDRIIIGDREWAAHIKSKSH 419
>sp|Q80UN9|MOD5_MOUSE tRNA dimethylallyltransferase, mitochondrial OS=Mus musculus
GN=Trit1 PE=2 SV=2
Length = 467
Score = 147 bits (370), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 81/223 (36%), Positives = 115/223 (51%), Gaps = 33/223 (14%)
Query: 11 HLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEF 70
H + VLD+RL+ RV M+ GL+EEL FHR+YN
Sbjct: 230 HADQAVLDERLDKRVDDMLAAGLLEELRGFHRRYN------------------------- 264
Query: 71 HNYLMLSDQDRQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLAN 130
L + DY GIFQSIGFKEFH YL ++ + ++ K ++AL
Sbjct: 265 -----LKNISENSQDYQHGIFQSIGFKEFHEYLT-TEGKCTPETSNQLLKKGIEALKQVT 318
Query: 131 VQYAKKQNQWVRNRLLKCPDRMVPPVYSLNCTDLTTWAQSVTAPALHIVQSYLDNRAPTG 190
+YA+KQN+WV+NR L P VPPVY L +D++ W +SV PAL+IVQS++ PT
Sbjct: 319 KRYARKQNRWVKNRFLSRPGPSVPPVYGLEVSDVSKWEESVLEPALNIVQSFIQGHKPTA 378
Query: 191 IEPLAQEYVDPSYYNAGTFNCDVCNRLFIGQHQYEQHMNSVKH 233
+ P+ Y + S CD+C+R+ IG ++ H+ S H
Sbjct: 379 M-PVKMAY-NESENKRSYHMCDLCDRIIIGDREWAAHLKSKSH 419
>sp|Q9UT75|MOD5_SCHPO tRNA dimethylallyltransferase, mitochondrial OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=tit1 PE=3 SV=1
Length = 434
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 111/263 (42%), Gaps = 76/263 (28%)
Query: 13 NSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHN 72
+S VL RL+ RV M+ +GL++E+
Sbjct: 210 DSLVLMPRLDKRVDKMLSHGLVDEIKSMKS------------------------------ 239
Query: 73 YLMLSDQDRQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQ 132
L++ ++ PD+T+GI+Q IGFKEF + + SD +FN L+ + ++ Q
Sbjct: 240 ---LAESEKFSPDFTRGIWQCIGFKEFMPWF-----EAPSDI---VFNDCLERMKVSTRQ 288
Query: 133 YAKKQNQWVRNRLLK--------CPDRMVPPVYSLNCTDLTTWAQSVTAPALHIVQSYL- 183
YAK Q +W+++R L P ++ + N TDL W + V A + Q +
Sbjct: 289 YAKSQKKWIQSRFLPMCLAQQDLSPSSIL--FSTTNTTDLNNWEEQVEK-ACRVFQYFFY 345
Query: 184 --DNRAPTGIE----PLAQEYVDPSYYNA-----GTFNCDVC------NRLFIGQHQYEQ 226
D AP+ + A++Y+ S N F C+ C IG+ +
Sbjct: 346 NGDAIAPSADDQHAFEKARDYL--SIMNGRQSQKKKFVCEECLDKRGDPFTVIGEDAFNV 403
Query: 227 HMNSVKH----RRMKVKMERQLQ 245
H+ S KH RR K + ERQ++
Sbjct: 404 HIKSRKHKTTVRRKKERAERQIR 426
>sp|P07884|MOD5_YEAST tRNA dimethylallyltransferase, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MOD5 PE=1
SV=2
Length = 428
Score = 64.7 bits (156), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 108/251 (43%), Gaps = 58/251 (23%)
Query: 2 ELNLKFTVNHL----NSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDY 57
++ LKF L E L +RL+ RV M++ G ++E+ Q + Y++++ P+
Sbjct: 194 KITLKFDTLFLWLYSKPEPLFQRLDDRVDDMLERGALQEIKQLYEYYSQNK----FTPEQ 249
Query: 58 TKGIFQSIGFKEFHNYLMLSDQDRQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGRE 117
+ G++Q IGFKEF +L ++D
Sbjct: 250 CEN----------------------------GVWQVIGFKEFLPWLT-----GKTDDNTV 276
Query: 118 IFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPPVYSLNCTDLTTWAQSVTAPALH 177
++ + QYAK+Q +W++ L+ PD + +Y L+ TDL+ W + + A+
Sbjct: 277 KLEDCIERMKTRTRQYAKRQVKWIKKMLI--PD-IKGDIYLLDATDLSQWDTNASQRAIA 333
Query: 178 IVQSYLDN------RAPTGIEPLAQ--EYVDPSYYNAGTFNCDVC------NRLFIGQHQ 223
I ++ N RAP +E L E + + C+VC N + IG+
Sbjct: 334 ISNDFISNRPIKQERAPKALEELLSKGETTMKKLDDWTHYTCNVCRNADGKNVVAIGEKY 393
Query: 224 YEQHMNSVKHR 234
++ H+ S +H+
Sbjct: 394 WKIHLGSRRHK 404
>sp|Q9ZUX7|IPT2_ARATH tRNA dimethylallyltransferase 2 OS=Arabidopsis thaliana GN=IPT2
PE=1 SV=2
Length = 466
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 105/227 (46%), Gaps = 22/227 (9%)
Query: 14 SEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNY 73
+ VLD+ +E RV M+ GL++E+ ++ DYT+G+ QSIG +EF ++
Sbjct: 235 TAVLDRYVEQRVDAMVDAGLLDEVYDIYKP----------GADYTRGLRQSIGVREFEDF 284
Query: 74 LMLSDQDRQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQY 133
L + + T KE ++ D DK R + +++D + L N +
Sbjct: 285 LKIHLSETCAGHLTSLSNDDKVMKENLRKILNFPKD---DKLRIMLEEAIDRVKL-NTRR 340
Query: 134 AKKQNQWVRNRLLKCPDRMVPPV----YSLNCTDLTTWAQSVTAPALHIVQSYLDNRAPT 189
++ + +RL + + Y L+ ++ +W V PA I++ +L+ +
Sbjct: 341 LLRRQKRRVSRLETVFGWNIHYIDATEYILSKSE-ESWNAQVVKPASEIIRCFLETETES 399
Query: 190 GIEPLAQEYVDPSYYNAGTFNCDVC-NRLFIGQHQYEQHMNSVKHRR 235
G +P + + ++ + + C+ C N++ G+H++E H HR+
Sbjct: 400 GRDPTSGKSIERDLWT--QYVCEACGNKILRGRHEWEHHKQGRTHRK 444
>sp|Q9SB60|IPT4_ARATH Adenylate isopentenyltransferase 4 OS=Arabidopsis thaliana GN=IPT4
PE=1 SV=1
Length = 318
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 12/82 (14%)
Query: 7 FTVNHLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIG 66
F ++ VL + L R+ M+++G+ EE+ +FHR + P GI+++IG
Sbjct: 140 FIWIDVDQSVLFEYLSLRLDLMMKSGMFEEIAEFHRS--------KKAPKEPLGIWKAIG 191
Query: 67 FKEFHNYLML----SDQDRQEP 84
+EF +YL + +D D+ +P
Sbjct: 192 VQEFDDYLKMYKWDNDMDKWDP 213
>sp|Q93WC9|IPT3_ARATH Adenylate isopentenyltransferase 3, chloroplastic OS=Arabidopsis
thaliana GN=IPT3 PE=1 SV=1
Length = 336
Score = 40.0 bits (92), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 13/72 (18%)
Query: 16 VLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYL- 74
VL + RV M+++G++EE+ +F N D Y++GI ++IGF EF +
Sbjct: 171 VLHGFVSERVDKMVESGMVEEVREFFDFSNSD---------YSRGIKKAIGFPEFDRFFR 221
Query: 75 ---MLSDQDRQE 83
L+ +DR+E
Sbjct: 222 NEQFLNVEDREE 233
Score = 31.6 bits (70), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 18/116 (15%)
Query: 80 DRQEPDYTKGIFQSIGFKEFHNYL----MLSDSDRESDKGREIFNKSLDALVLANVQYAK 135
D DY++GI ++IGF EF + L+ DRE E+ +K L+ + + A
Sbjct: 197 DFSNSDYSRGIKKAIGFPEFDRFFRNEQFLNVEDRE-----ELLSKVLEEIKRNTFELAC 251
Query: 136 KQNQWVRNRLLKCPDRMV-----PPVYSLNCTDL---TTWAQSVTAPALHIVQSYL 183
+Q + + RL K + PV++ + + W + V P+ V +L
Sbjct: 252 RQREKI-ERLRKVKKWSIQRVDATPVFTKRRSKMDANVAWERLVAGPSTDTVSRFL 306
>sp|Q2RJG0|MIAA_MOOTA tRNA dimethylallyltransferase OS=Moorella thermoacetica (strain
ATCC 39073) GN=miaA PE=3 SV=1
Length = 324
Score = 38.1 bits (87), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 11/59 (18%)
Query: 16 VLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYL 74
+L +R+E RV MI GLIEE+ + +Y DY Q++G+KE YL
Sbjct: 213 LLYRRIEARVDAMIAAGLIEEVSRLLARY-----------DYRLPALQALGYKEIGAYL 260
>sp|A6Q1Q8|MIAA_NITSB tRNA dimethylallyltransferase OS=Nitratiruptor sp. (strain SB155-2)
GN=miaA PE=3 SV=1
Length = 299
Score = 37.7 bits (86), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 11/63 (17%)
Query: 12 LNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFH 71
++ + L KR+E R MIQ GLIEE+ ++Y EP+ K +IG KE
Sbjct: 194 IDRKTLRKRIEDRTKRMIQKGLIEEICTLEKKYTR-------EPNAMK----AIGIKETI 242
Query: 72 NYL 74
+YL
Sbjct: 243 HYL 245
>sp|O14213|MU185_SCHPO Meiotically up-regulated gene 185 protein OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mug185 PE=1 SV=1
Length = 380
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 192 EPLAQEYVDPSYYNAGTFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKMERQLQ 245
E L++E V N+ C VCN+ F Q+Q E H NS KH++ KM ++++
Sbjct: 258 ESLSKEIV-----NSNPIMCMVCNKNFRSQNQLENHENSKKHKKNLRKMNQEIK 306
>sp|Q8AVN9|ZN346_XENLA Zinc finger protein 346 OS=Xenopus laevis GN=znf346 PE=1 SV=1
Length = 524
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
Query: 191 IEPLAQE----YVDPSYYNAGT----FNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKM 240
+ PL++E V PS + +G+ F+CD CN + QY+ H++ KH+ + M
Sbjct: 374 MTPLSEEGHTAAVAPSAFASGSAGKGFSCDTCNIVLNSIEQYQAHVSGAKHKNQLMSM 431
Score = 36.6 bits (83), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
Query: 191 IEPLAQE----YVDPSYYNAGT----FNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKM 240
+ PL++E V PS + +G+ F+CD CN + QY+ H++ KH+ + M
Sbjct: 317 MTPLSEEGHTAAVAPSAFASGSAGKGFSCDTCNIVLNSIEQYQAHISGAKHKNHLMSM 374
Score = 34.3 bits (77), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 8/52 (15%)
Query: 191 IEPLAQE----YVDPSYYNAGT----FNCDVCNRLFIGQHQYEQHMNSVKHR 234
+ PL++E V PS +G+ F+CD CN + QY+ H++ KH+
Sbjct: 260 MTPLSEEGHQAVVAPSAIASGSAGKGFSCDTCNIVLNSIEQYQAHISGAKHK 311
Score = 31.2 bits (69), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 201 PSYYNAG-TFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKM 240
P +AG F+CD CN + QY+ H++ KH+ + M
Sbjct: 220 PGSGSAGKGFSCDKCNIVLNSIEQYQAHVSGAKHKNQLMSM 260
>sp|B8CX96|MIAA_HALOH tRNA dimethylallyltransferase OS=Halothermothrix orenii (strain H
168 / OCM 544 / DSM 9562) GN=miaA PE=3 SV=1
Length = 328
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 12/80 (15%)
Query: 4 NLKFTVNHLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQ 63
NLK + + E L KR+ RV MI+ GLI+E+ +Y PD +K Q
Sbjct: 207 NLKIGL-YREREELYKRINKRVDIMIEQGLIDEVKYLLTKY----------PDLSKTARQ 255
Query: 64 SIGFKEFHNYLMLSDQDRQE 83
+G+KE YL + DR+E
Sbjct: 256 GLGYKEIIGYLK-REYDREE 274
>sp|A7Z500|MIAA_BACA2 tRNA dimethylallyltransferase OS=Bacillus amyloliquefaciens (strain
FZB42) GN=miaA PE=3 SV=1
Length = 314
Score = 36.2 bits (82), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 10/66 (15%)
Query: 91 FQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCPD 150
Q+IG+KE + YL G+ ++++ L + +YAK+Q W RN++
Sbjct: 240 IQAIGYKELYEYL----------DGKVPLPQAVEQLKQNSRRYAKRQLTWFRNKMPVSWT 289
Query: 151 RMVPPV 156
M PPV
Sbjct: 290 DMTPPV 295
>sp|O59811|YJVF_SCHPO Zinc finger protein C550.15c OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPCC550.15c PE=1 SV=1
Length = 463
Score = 36.2 bits (82), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 210 NCDVCNRLFIGQHQYEQHMNSVKHRRMKVKMER 242
NC+VCN+ F + Y HM S KHR K +R
Sbjct: 71 NCEVCNKKFYSEGAYSSHMASKKHRDNLSKFQR 103
>sp|Q65JA9|MIAA_BACLD tRNA dimethylallyltransferase OS=Bacillus licheniformis (strain DSM
13 / ATCC 14580) GN=miaA PE=3 SV=1
Length = 314
Score = 36.2 bits (82), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 91 FQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCPD 150
Q+IG+KE + +L +GR ++++ L + +YAK+Q W RN++
Sbjct: 240 VQAIGYKELYAHL----------EGRASLEEAVETLKRNSRRYAKRQLTWFRNQMDVAWF 289
Query: 151 RMVPPV 156
M PPV
Sbjct: 290 DMTPPV 295
>sp|B1X0D2|MIAA_CYAA5 tRNA dimethylallyltransferase OS=Cyanothece sp. (strain ATCC 51142)
GN=miaA PE=3 SV=1
Length = 301
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 50/130 (38%)
Query: 13 NSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHN 72
++E L +R+E R M++ G +EE+ + ++Y + +F+++G+ E N
Sbjct: 191 STEELKRRIEIRTKKMLEMGFVEEVEKLVKKYG-----------WELPLFKTLGYAEILN 239
Query: 73 YLMLSDQDRQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQ 132
YL L LS+++RE ++L Q
Sbjct: 240 YL-------------------------QGKLSLSEAERE--------------IILHTRQ 260
Query: 133 YAKKQNQWVR 142
+AK+Q W R
Sbjct: 261 FAKRQRTWFR 270
>sp|Q5WFY6|MIAA_BACSK tRNA dimethylallyltransferase OS=Bacillus clausii (strain KSM-K16)
GN=miaA PE=3 SV=1
Length = 310
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 60/140 (42%), Gaps = 33/140 (23%)
Query: 9 VNHLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFK 68
V HL + ++ G N LI L+ RQ +RI ++++ G+ +
Sbjct: 169 VIHLTGKPFSEQENGLARPRFDNVLIG--LEMERQALYERINRRVDAMMEAGLLE----- 221
Query: 69 EFHNYLMLSDQDRQEPDYTKGI----FQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLD 124
E H Y +GI Q+IG+KE + Y G+ ++++++
Sbjct: 222 EVHRL------------YQRGIQGQAIQAIGYKELYAYF----------DGKCTYDEAIE 259
Query: 125 ALVLANVQYAKKQNQWVRNR 144
AL + +YAK+Q W +NR
Sbjct: 260 ALKTNSRRYAKRQLTWFKNR 279
>sp|A4WUI0|MIAA_RHOS5 tRNA dimethylallyltransferase OS=Rhodobacter sphaeroides (strain
ATCC 17025 / ATH 2.4.3) GN=miaA PE=3 SV=1
Length = 291
Score = 35.4 bits (80), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 15/72 (20%)
Query: 74 LMLSDQDRQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQY 133
+ L+D D P ++IG E +L KG ++++ A LA+ QY
Sbjct: 226 VALADWDPALPSS-----RAIGAPELVAHL----------KGERTLDEAIAAAKLASRQY 270
Query: 134 AKKQNQWVRNRL 145
AK+Q W RNR+
Sbjct: 271 AKRQRTWFRNRM 282
>sp|A8YWA5|MIAA_LACH4 tRNA dimethylallyltransferase OS=Lactobacillus helveticus (strain
DPC 4571) GN=miaA PE=3 SV=1
Length = 306
Score = 35.4 bits (80), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 90 IFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCP 149
+ Q+I +KEF Y KG + N+ ++ L A+ +YAK+Q + RN+L P
Sbjct: 234 VLQAIAYKEFFPYF----------KGEKTLNECVEQLKTASRRYAKRQLTYFRNQL---P 280
Query: 150 DRMVPPVYSLNCTD 163
P+ +C D
Sbjct: 281 VNWFDPLNDPDCED 294
>sp|Q50HM6|GH109_STRSH Glycosyl hydrolase family 109 protein OS=Streptomyces spheroides
PE=3 SV=1
Length = 494
Score = 35.0 bits (79), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 13/73 (17%)
Query: 22 EGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSI-------------GFK 68
E RV M GL +LL YN D G +PDY +G ++ + GF
Sbjct: 230 EMRVLRMAHAGLFGDLLHGAGAYNHDLRGLMFDPDYYEGPWRRLWHTRLRGDLYPNHGFG 289
Query: 69 EFHNYLMLSDQDR 81
NYL ++ DR
Sbjct: 290 PVANYLDINRGDR 302
>sp|A2BTL7|MIAA_PROMS tRNA dimethylallyltransferase OS=Prochlorococcus marinus (strain
AS9601) GN=miaA PE=3 SV=1
Length = 299
Score = 34.3 bits (77), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 17/87 (19%)
Query: 58 TKGIFQSIGFKEFHNYLMLSDQDRQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGRE 117
TK +F S G E NYL+ + + I ++IG++E + L K
Sbjct: 206 TKNMF-SAGIIEETNYLI------SKYGFDLPILETIGYREAKDVL----------KNHS 248
Query: 118 IFNKSLDALVLANVQYAKKQNQWVRNR 144
+K+++ +QYAK+Q W RN+
Sbjct: 249 TIDKAIELTTTKTIQYAKRQKTWFRNK 275
>sp|Q3V0C1|ZMAT1_MOUSE Zinc finger matrin-type protein 1 OS=Mus musculus GN=Zmat1 PE=2
SV=2
Length = 714
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 19/118 (16%)
Query: 117 EIFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPPVYSLNCTDLTTWAQSVTAPAL 176
++ N S D+L A Y K + +N+ L+ D++ P C+ + AP
Sbjct: 157 DLHNMSFDSLAAAPSHYVGKSHSPTQNQSLEEHDQVSPST----CSPKMDEPNTTPAPPP 212
Query: 177 HIVQSYLDNRAPTGIEPLAQEYVDPSYYNAGTFNCDVCNRLFIGQHQYEQHMNSVKHR 234
++S + ++P P Y T+ C +C+ F H + HM +H+
Sbjct: 213 -FLKSVI-------VKP-------PPAYRMRTYVCHICSITFTSLHMFRSHMQGTEHQ 255
>sp|A5WDN1|MIAA_PSYWF tRNA dimethylallyltransferase OS=Psychrobacter sp. (strain PRwf-1)
GN=miaA PE=3 SV=1
Length = 365
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 28/120 (23%)
Query: 42 RQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYLMLSDQDRQEPDYTKGIFQSIGFKEFHN 101
R + +RI +LE + G F +G + NY + D Q P + +G+++ +
Sbjct: 216 RAWLHERIALRLEMMWADGFFDEVG-QLLTNYSL----DAQMPS-----MRCVGYRQVID 265
Query: 102 YLMLSDS---DRESDKGREIFNKSLDA---------------LVLANVQYAKKQNQWVRN 143
YL+ +D R G+ + NK L+ + A Q AK+Q W+RN
Sbjct: 266 YLIATDHPLISRLKINGQSVDNKGLEVNEAHKSIACQDMKNKALYATRQLAKRQYTWLRN 325
>sp|Q9KAC3|MIAA_BACHD tRNA dimethylallyltransferase OS=Bacillus halodurans (strain ATCC
BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
GN=miaA PE=1 SV=1
Length = 314
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 15/64 (23%)
Query: 86 YTKGI-----FQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQW 140
Y +GI Q+IG+KE ++YL G +++D L + +YAK+Q W
Sbjct: 228 YDRGIRDCQSVQAIGYKEMYDYL----------DGNVTLEEAIDTLKRNSRRYAKRQLTW 277
Query: 141 VRNR 144
RN+
Sbjct: 278 FRNK 281
>sp|A4J5Q1|MIAA_DESRM tRNA dimethylallyltransferase OS=Desulfotomaculum reducens (strain
MI-1) GN=miaA PE=3 SV=1
Length = 283
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 4 NLKFTVNHLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQ 63
NLK ++ ++L +R+E RV M+ GL+ E+ + QYN +G L Q
Sbjct: 161 NLKMFGLTMDRQLLYQRIEQRVDLMMARGLLTEVKELVEQYNG--LGTAL---------Q 209
Query: 64 SIGFKEFHNYL 74
+G+KE YL
Sbjct: 210 GLGYKEIIGYL 220
>sp|Q049I6|MIAA_LACDB tRNA dimethylallyltransferase OS=Lactobacillus delbrueckii subsp.
bulgaricus (strain ATCC BAA-365) GN=miaA PE=3 SV=1
Length = 308
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 13/74 (17%)
Query: 90 IFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCP 149
+ Q+IG+KEF Y G + AL A+ +YAK+Q + RN+L P
Sbjct: 234 VLQAIGYKEFFPYFA----------GEASLETCVMALKTASRRYAKRQLTYFRNKL---P 280
Query: 150 DRMVPPVYSLNCTD 163
P+ NC +
Sbjct: 281 VEWYDPLTDPNCAN 294
>sp|Q8CWM5|MIAA_THEEB tRNA dimethylallyltransferase OS=Thermosynechococcus elongatus
(strain BP-1) GN=miaA PE=3 SV=1
Length = 312
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 11/55 (20%)
Query: 20 RLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYL 74
R+E R M+ G ++E+ Q RQY ED + ++G++E YL
Sbjct: 202 RIEARTQEMLAMGWLDEIQQLQRQYGED-----------LPLLDTLGYREMRQYL 245
>sp|Q1G9D6|MIAA_LACDA tRNA dimethylallyltransferase OS=Lactobacillus delbrueckii subsp.
bulgaricus (strain ATCC 11842 / DSM 20081) GN=miaA PE=3
SV=1
Length = 308
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 13/74 (17%)
Query: 90 IFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCP 149
+ Q+IG+KEF Y G + AL A+ +YAK+Q + RN+L P
Sbjct: 234 VLQAIGYKEFFPYFA----------GEASLETCVMALKTASRRYAKRQLTYFRNKL---P 280
Query: 150 DRMVPPVYSLNCTD 163
P+ NC +
Sbjct: 281 VEWYDPLTDPNCAN 294
>sp|Q5L0D9|MIAA_GEOKA tRNA dimethylallyltransferase OS=Geobacillus kaustophilus (strain
HTA426) GN=miaA PE=3 SV=1
Length = 315
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 19/80 (23%)
Query: 92 QSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDR 151
Q+IG+KE ++Y GR +++++ L + +YAK+Q W RN++
Sbjct: 238 QAIGYKELYDYF----------DGRVSLDEAIEQLKQNSRRYAKRQLTWFRNQM------ 281
Query: 152 MVPPVYSLNCTDLTTWAQSV 171
PV + TD +A V
Sbjct: 282 ---PVKWFDMTDAGQFAAKV 298
>sp|B1HRH3|MIAA_LYSSC tRNA dimethylallyltransferase OS=Lysinibacillus sphaericus (strain
C3-41) GN=miaA PE=3 SV=1
Length = 300
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 15/66 (22%)
Query: 11 HLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGI--FQSIGFK 68
+++ EVL R+ RV M++NGL+EE+ +Q +G+ Q+IG+K
Sbjct: 205 NMSREVLYDRINRRVDLMMENGLLEEVQGLWQQ-------------NIRGVQSIQAIGYK 251
Query: 69 EFHNYL 74
E ++YL
Sbjct: 252 ELYDYL 257
>sp|P74040|MIAA_SYNY3 tRNA dimethylallyltransferase OS=Synechocystis sp. (strain PCC 6803
/ Kazusa) GN=miaA PE=3 SV=1
Length = 303
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 11/63 (17%)
Query: 12 LNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFH 71
L E L R+ R H M++ GL++E+ QY ED + ++G+ E
Sbjct: 191 LEPEQLQPRIVHRTHAMVEAGLVKEVEGLINQYGEDL-----------PLLHTLGYAEIK 239
Query: 72 NYL 74
YL
Sbjct: 240 QYL 242
>sp|Q9GL65|TLR4_BOVIN Toll-like receptor 4 OS=Bos taurus GN=TLR4 PE=2 SV=2
Length = 841
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
Query: 98 EFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPP 155
+F+ +LML ++ +G I+ DA V+ Y+ + WVRN L+K + VPP
Sbjct: 654 KFYFHLMLLAGCKKYGRGESIY----DAFVI----YSSQDEDWVRNELVKNLEEGVPP 703
>sp|A8ER62|MIAA_ARCB4 tRNA dimethylallyltransferase OS=Arcobacter butzleri (strain
RM4018) GN=miaA PE=3 SV=1
Length = 291
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 15 EVLDKRLEGRVHTMIQNGLIEELLQFHRQYN 45
E L KR+ R +TMI++GLI+E++ ++Y
Sbjct: 190 EDLKKRVASRTNTMIKSGLIDEIIYLEKKYT 220
>sp|B1KSA1|MIAA_CLOBM tRNA dimethylallyltransferase OS=Clostridium botulinum (strain Loch
Maree / Type A3) GN=miaA PE=3 SV=1
Length = 311
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Query: 4 NLKFTVNHLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQ 63
N+ + V ++N EVL +R+ RV M+ GLIEE+ + PD +
Sbjct: 192 NVNYFVLNMNREVLYERINKRVDIMMGKGLIEEVKKLESM--------GYTPDMQS--MK 241
Query: 64 SIGFKEFHNYL 74
IG+KE YL
Sbjct: 242 GIGYKEVLFYL 252
>sp|A4IMI5|MIAA_GEOTN tRNA dimethylallyltransferase OS=Geobacillus thermodenitrificans
(strain NG80-2) GN=miaA PE=3 SV=1
Length = 315
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 60/156 (38%), Gaps = 59/156 (37%)
Query: 16 VLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYLM 75
VL +R+ RV MI GLIEE+ Y +G+
Sbjct: 202 VLYRRINERVDEMIAEGLIEEVRSL----------------YDRGL-------------- 231
Query: 76 LSDQDRQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAK 135
+D Q Q+IG+KE ++Y GR +++++ L + +YAK
Sbjct: 232 ---RDCQA-------VQAIGYKELYDYF----------DGRVSLDEAIEQLKQNSRRYAK 271
Query: 136 KQNQWVRNRLLKCPDRMVPPVYSLNCTDLTTWAQSV 171
+Q W RN++ PV + TD +A V
Sbjct: 272 RQLTWFRNQM---------PVEWFDMTDPEKFAVKV 298
>sp|C1FNT7|MIAA_CLOBJ tRNA dimethylallyltransferase OS=Clostridium botulinum (strain
Kyoto / Type A2) GN=miaA PE=3 SV=1
Length = 311
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Query: 4 NLKFTVNHLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQ 63
N+ + + ++N EVL +R+ RV M+ GLIEE+ + PD +
Sbjct: 192 NVNYFILNMNREVLYERINKRVDIMMSKGLIEEVKKLESM--------GYTPDMQS--MK 241
Query: 64 SIGFKEFHNYL 74
IG+KE YL
Sbjct: 242 GIGYKEVLFYL 252
>sp|C3KX33|MIAA_CLOB6 tRNA dimethylallyltransferase OS=Clostridium botulinum (strain 657
/ Type Ba4) GN=miaA PE=3 SV=1
Length = 311
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Query: 4 NLKFTVNHLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQ 63
N+ + V ++N EVL +R+ RV M+ GLIEE+ + PD +
Sbjct: 192 NVNYFVLNMNREVLYERINKRVDIMMGKGLIEEVKKLESM--------GYTPDMQS--MK 241
Query: 64 SIGFKEFHNYL 74
IG+KE YL
Sbjct: 242 GIGYKEVLFYL 252
>sp|C5CD61|MIAA_KOSOT tRNA dimethylallyltransferase OS=Kosmotoga olearia (strain TBF
19.5.1) GN=miaA PE=3 SV=1
Length = 308
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 14/60 (23%)
Query: 17 LDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIF--QSIGFKEFHNYL 74
L +R+E RV M+++GLIEE+++ E YT+ + Q+IG+ E +YL
Sbjct: 197 LAERIENRVDKMVESGLIEEVVRLK------------EMGYTRELNSQQTIGYAEIWSYL 244
>sp|A7HJQ9|MIAA_FERNB tRNA dimethylallyltransferase OS=Fervidobacterium nodosum (strain
ATCC 35602 / DSM 5306 / Rt17-B1) GN=miaA PE=3 SV=1
Length = 308
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 13/70 (18%)
Query: 7 FTVNHLNSE--VLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQS 64
F + LN++ +L +R+ R MI++GLI+E+ + +Y D T F++
Sbjct: 186 FVLIVLNTDRNILYERINIRAEKMIEHGLIDEVKELIEKY-----------DKTLDTFKT 234
Query: 65 IGFKEFHNYL 74
IG++E +YL
Sbjct: 235 IGYREIIDYL 244
>sp|C1CQE9|MIAA_STRZT tRNA dimethylallyltransferase OS=Streptococcus pneumoniae (strain
Taiwan19F-14) GN=miaA PE=3 SV=1
Length = 294
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 10/54 (18%)
Query: 92 QSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRL 145
+ IG+KE Y +G + F ++ ++L A ++AK+Q W RNR+
Sbjct: 225 KGIGYKELFPYF----------RGEQTFEEASESLKQATRRFAKRQLTWFRNRM 268
>sp|C1CJD7|MIAA_STRZP tRNA dimethylallyltransferase OS=Streptococcus pneumoniae (strain
P1031) GN=miaA PE=3 SV=1
Length = 294
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 10/54 (18%)
Query: 92 QSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRL 145
+ IG+KE Y +G + F ++ ++L A ++AK+Q W RNR+
Sbjct: 225 KGIGYKELFPYF----------RGEQTFEEARESLKQATRRFAKRQLTWFRNRM 268
>sp|Q8CWS7|MIAA_STRR6 tRNA dimethylallyltransferase OS=Streptococcus pneumoniae (strain
ATCC BAA-255 / R6) GN=miaA PE=3 SV=2
Length = 294
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 10/54 (18%)
Query: 92 QSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRL 145
+ IG+KE Y +G + F ++ ++L A ++AK+Q W RNR+
Sbjct: 225 KGIGYKELFPYF----------RGEQTFEEARESLKQATRRFAKRQLTWFRNRM 268
>sp|B8ZMQ3|MIAA_STRPJ tRNA dimethylallyltransferase OS=Streptococcus pneumoniae (strain
ATCC 700669 / Spain 23F-1) GN=miaA PE=3 SV=1
Length = 294
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 10/54 (18%)
Query: 92 QSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRL 145
+ IG+KE Y +G + F ++ ++L A ++AK+Q W RNR+
Sbjct: 225 KGIGYKELFPYF----------RGEQTFEEARESLKQATRRFAKRQLTWFRNRM 268
>sp|Q04LL6|MIAA_STRP2 tRNA dimethylallyltransferase OS=Streptococcus pneumoniae serotype
2 (strain D39 / NCTC 7466) GN=miaA PE=3 SV=1
Length = 294
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 10/54 (18%)
Query: 92 QSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRL 145
+ IG+KE Y +G + F ++ ++L A ++AK+Q W RNR+
Sbjct: 225 KGIGYKELFPYF----------RGEQTFEEARESLKQATRRFAKRQLTWFRNRM 268
>sp|B1IAK9|MIAA_STRPI tRNA dimethylallyltransferase OS=Streptococcus pneumoniae (strain
Hungary19A-6) GN=miaA PE=3 SV=1
Length = 294
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 10/54 (18%)
Query: 92 QSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRL 145
+ IG+KE Y +G + F ++ ++L A ++AK+Q W RNR+
Sbjct: 225 KGIGYKELFPYF----------RGEQTFEEARESLKQATRRFAKRQLTWFRNRM 268
>sp|B5E2R3|MIAA_STRP4 tRNA dimethylallyltransferase OS=Streptococcus pneumoniae serotype
19F (strain G54) GN=miaA PE=3 SV=1
Length = 294
Score = 32.3 bits (72), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 10/54 (18%)
Query: 92 QSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRL 145
+ IG+KE Y +G + F ++ ++L A ++AK+Q W RNR+
Sbjct: 225 KGIGYKELFPYF----------RGEQTFEEARESLKQATRRFAKRQLTWFRNRM 268
>sp|Q9MYW3|TLR4_HORSE Toll-like receptor 4 OS=Equus caballus GN=TLR4 PE=2 SV=1
Length = 843
Score = 32.3 bits (72), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
Query: 98 EFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPP 155
+F+ +LML ++ +G I+ DA V+ Y+ + WVRN L+K + VPP
Sbjct: 655 KFYFHLMLLAGCKKYGRGESIY----DAFVI----YSSQDEDWVRNELVKNLEEGVPP 704
>sp|B0JZ85|ZN346_XENTR Zinc finger protein 346 OS=Xenopus tropicalis GN=znf346 PE=2 SV=2
Length = 354
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 201 PSYYNAG-TFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKM 240
P +AG F+CD CN + QY+ H++ KH+ + M
Sbjct: 223 PGSGSAGKGFSCDTCNIVLNSIEQYQAHVSGAKHKNQLMSM 263
>sp|A5I2S0|MIAA_CLOBH tRNA dimethylallyltransferase OS=Clostridium botulinum (strain Hall
/ ATCC 3502 / NCTC 13319 / Type A) GN=miaA PE=3 SV=1
Length = 311
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Query: 4 NLKFTVNHLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQ 63
N+ + + ++N EVL +R+ RV M+ GLIEE+ + PD +
Sbjct: 192 NVNYFILNMNREVLYERINKRVDIMMGKGLIEEVKKLESM--------GYTPDMQS--MK 241
Query: 64 SIGFKEFHNYL 74
IG+KE YL
Sbjct: 242 GIGYKEVLFYL 252
>sp|A7FUK8|MIAA_CLOB1 tRNA dimethylallyltransferase OS=Clostridium botulinum (strain ATCC
19397 / Type A) GN=miaA PE=3 SV=1
Length = 311
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Query: 4 NLKFTVNHLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQ 63
N+ + + ++N EVL +R+ RV M+ GLIEE+ + PD +
Sbjct: 192 NVNYFILNMNREVLYERINKRVDIMMGKGLIEEVKKLESM--------GYTPDMQS--MK 241
Query: 64 SIGFKEFHNYL 74
IG+KE YL
Sbjct: 242 GIGYKEVLFYL 252
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,278,092
Number of Sequences: 539616
Number of extensions: 4138999
Number of successful extensions: 11949
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 11871
Number of HSP's gapped (non-prelim): 120
length of query: 269
length of database: 191,569,459
effective HSP length: 115
effective length of query: 154
effective length of database: 129,513,619
effective search space: 19945097326
effective search space used: 19945097326
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)