Query psy10921
Match_columns 269
No_of_seqs 231 out of 1322
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 21:55:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10921.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10921hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02748 tRNA dimethylallyltra 100.0 8.8E-51 1.9E-55 394.4 21.7 224 2-245 225-456 (468)
2 PLN02165 adenylate isopentenyl 100.0 9.9E-34 2.1E-38 264.7 15.5 147 2-186 173-334 (334)
3 KOG1384|consensus 100.0 6.5E-32 1.4E-36 249.3 9.3 190 2-241 136-347 (348)
4 PF01715 IPPT: IPP transferase 100.0 1.5E-29 3.3E-34 229.5 14.4 102 2-161 151-252 (253)
5 TIGR00174 miaA tRNA isopenteny 100.0 5.7E-29 1.2E-33 229.2 12.8 104 2-163 183-286 (287)
6 PRK00091 miaA tRNA delta(2)-is 100.0 1.5E-28 3.2E-33 228.6 14.8 104 2-164 187-291 (307)
7 PRK14729 miaA tRNA delta(2)-is 99.9 8.3E-28 1.8E-32 222.7 12.5 105 2-163 185-289 (300)
8 PLN02840 tRNA dimethylallyltra 99.9 3.5E-26 7.6E-31 219.7 14.6 126 2-186 231-362 (421)
9 COG0324 MiaA tRNA delta(2)-iso 99.9 3.3E-26 7.1E-31 212.0 13.8 104 2-164 188-292 (308)
10 PF12171 zf-C2H2_jaz: Zinc-fin 98.6 2.8E-08 6.1E-13 60.0 1.5 27 208-234 1-27 (27)
11 smart00451 ZnF_U1 U1-like zinc 98.5 8.7E-08 1.9E-12 60.8 2.8 32 208-239 3-34 (35)
12 PF12874 zf-met: Zinc-finger o 98.2 1.1E-06 2.5E-11 51.6 2.2 25 209-233 1-25 (25)
13 PF06220 zf-U1: U1 zinc finger 96.9 0.0009 1.9E-08 43.8 3.0 33 207-239 2-36 (38)
14 KOG0717|consensus 96.4 0.0024 5.2E-08 62.4 3.3 38 208-245 292-329 (508)
15 KOG3408|consensus 96.0 0.0056 1.2E-07 49.8 2.9 37 205-241 54-90 (129)
16 KOG3032|consensus 95.6 0.013 2.8E-07 52.7 3.7 37 204-241 31-67 (264)
17 PF00096 zf-C2H2: Zinc finger, 95.3 0.013 2.7E-07 33.3 1.9 22 209-230 1-22 (23)
18 KOG4727|consensus 94.8 0.017 3.8E-07 49.6 2.0 33 207-239 74-106 (193)
19 PF13894 zf-C2H2_4: C2H2-type 94.3 0.033 7.3E-07 31.1 1.9 22 209-230 1-22 (24)
20 smart00586 ZnF_DBF Zinc finger 93.9 0.03 6.4E-07 38.7 1.4 29 207-238 4-32 (49)
21 PF13912 zf-C2H2_6: C2H2-type 93.7 0.043 9.4E-07 32.3 1.6 23 208-230 1-23 (27)
22 PF01745 IPT: Isopentenyl tran 93.6 0.38 8.3E-06 43.4 8.2 99 4-141 117-222 (233)
23 PF07535 zf-DBF: DBF zinc fing 93.1 0.068 1.5E-06 36.9 2.0 28 207-237 4-31 (49)
24 COG5112 UFD2 U1-like Zn-finger 92.8 0.062 1.4E-06 42.9 1.7 37 206-242 53-89 (126)
25 KOG2785|consensus 91.9 0.079 1.7E-06 50.8 1.6 36 207-242 67-102 (390)
26 COG5188 PRP9 Splicing factor 3 91.8 0.083 1.8E-06 50.4 1.5 36 207-242 237-272 (470)
27 smart00355 ZnF_C2H2 zinc finge 91.0 0.21 4.6E-06 28.0 2.2 21 209-229 1-21 (26)
28 PF12756 zf-C2H2_2: C2H2 type 90.6 0.12 2.7E-06 38.8 1.2 31 208-238 50-80 (100)
29 KOG0227|consensus 89.3 0.25 5.5E-06 43.4 2.2 39 206-244 51-89 (222)
30 PTZ00448 hypothetical protein; 88.3 0.4 8.6E-06 46.1 3.0 36 208-243 314-349 (373)
31 KOG3454|consensus 86.8 0.35 7.5E-06 41.4 1.5 43 208-250 3-52 (165)
32 PF11931 DUF3449: Domain of un 85.1 0.27 5.9E-06 43.4 0.0 34 205-238 98-132 (196)
33 COG5246 PRP11 Splicing factor 81.0 1.4 3E-05 38.6 2.7 35 206-240 51-85 (222)
34 KOG2785|consensus 79.2 1.5 3.3E-05 42.2 2.7 36 207-242 2-37 (390)
35 PRK11545 gntK gluconate kinase 73.0 4 8.6E-05 34.3 3.3 23 3-25 90-112 (163)
36 PF13913 zf-C2HC_2: zinc-finge 72.5 3.3 7.2E-05 24.3 2.0 20 209-229 3-22 (25)
37 PHA00616 hypothetical protein 70.5 2.5 5.3E-05 28.6 1.2 23 208-230 1-23 (44)
38 PHA02768 hypothetical protein; 69.6 3.1 6.7E-05 29.4 1.6 23 208-230 5-27 (55)
39 PF04988 AKAP95: A-kinase anch 68.6 3.9 8.5E-05 35.1 2.3 25 209-234 1-26 (165)
40 KOG2384|consensus 66.2 1.9 4.1E-05 38.3 -0.1 32 205-237 81-112 (223)
41 PRK09825 idnK D-gluconate kina 65.1 6.1 0.00013 33.7 2.9 23 3-25 98-120 (176)
42 PF04959 ARS2: Arsenite-resist 63.2 4.8 0.0001 36.1 1.9 35 207-242 76-110 (214)
43 COG4049 Uncharacterized protei 62.1 9.8 0.00021 27.2 2.9 26 204-229 13-38 (65)
44 PF09237 GAGA: GAGA factor; I 59.9 8.2 0.00018 27.1 2.2 27 205-231 21-47 (54)
45 PF13465 zf-H2C2_2: Zinc-finge 57.1 5.6 0.00012 23.3 0.9 13 207-219 13-25 (26)
46 TIGR02322 phosphon_PhnN phosph 55.2 12 0.00027 31.2 3.1 21 4-24 111-131 (179)
47 KOG4722|consensus 52.6 8 0.00017 38.1 1.6 34 207-240 492-525 (672)
48 KOG1384|consensus 49.7 13 0.00028 35.6 2.5 181 15-250 145-335 (348)
49 KOG2636|consensus 44.2 14 0.0003 36.6 1.8 30 206-235 399-429 (497)
50 PF03194 LUC7: LUC7 N_terminus 43.5 17 0.00036 33.3 2.2 31 207-237 189-222 (254)
51 cd00227 CPT Chloramphenicol (C 43.5 26 0.00057 29.3 3.3 25 3-27 110-134 (175)
52 cd01673 dNK Deoxyribonucleosid 43.4 34 0.00073 28.8 3.9 25 4-28 125-149 (193)
53 KOG3288|consensus 42.5 12 0.00026 34.6 1.0 27 208-234 276-302 (307)
54 KOG0150|consensus 42.3 19 0.00041 34.1 2.3 33 207-239 9-42 (336)
55 cd02021 GntK Gluconate kinase 39.8 34 0.00075 27.5 3.3 23 3-25 97-119 (150)
56 TIGR01313 therm_gnt_kin carboh 39.7 34 0.00074 28.0 3.3 23 3-25 93-115 (163)
57 PHA00732 hypothetical protein 39.2 23 0.00049 26.7 2.0 22 209-230 2-23 (79)
58 PF13909 zf-H2C2_5: C2H2-type 37.9 28 0.00061 19.4 1.8 21 209-230 1-21 (24)
59 KOG3347|consensus 37.1 31 0.00067 29.8 2.6 20 6-25 95-114 (176)
60 PF12013 DUF3505: Protein of u 36.9 32 0.00069 26.9 2.6 28 207-235 10-37 (109)
61 COG1936 Predicted nucleotide k 34.8 35 0.00076 29.8 2.7 19 6-24 85-103 (180)
62 PRK10078 ribose 1,5-bisphospho 33.7 50 0.0011 27.9 3.5 21 4-24 111-131 (186)
63 PF07931 CPT: Chloramphenicol 33.1 53 0.0011 28.3 3.5 26 2-27 108-133 (174)
64 KOG3792|consensus 32.7 20 0.00044 37.4 1.0 31 206-236 191-221 (816)
65 PRK05541 adenylylsulfate kinas 32.4 29 0.00063 28.9 1.8 20 5-24 103-122 (176)
66 KOG2837|consensus 30.8 8.9 0.00019 35.6 -1.7 31 207-237 24-54 (309)
67 PRK13808 adenylate kinase; Pro 30.7 25 0.00054 33.6 1.2 24 5-28 108-131 (333)
68 COG5188 PRP9 Splicing factor 3 30.1 27 0.00058 33.8 1.3 30 206-235 372-402 (470)
69 PF01712 dNK: Deoxynucleoside 30.1 43 0.00093 27.5 2.4 28 5-33 69-96 (146)
70 PHA00733 hypothetical protein 29.7 39 0.00085 27.6 2.1 24 207-230 72-95 (128)
71 PF03715 Noc2: Noc2p family; 29.7 65 0.0014 30.1 3.8 36 26-74 191-226 (299)
72 PRK00625 shikimate kinase; Pro 29.5 37 0.00081 28.9 2.0 21 4-24 96-116 (173)
73 COG5067 DBF4 Protein kinase es 28.3 23 0.00051 34.6 0.6 27 207-236 421-447 (468)
74 PRK13974 thymidylate kinase; P 28.2 79 0.0017 27.5 3.9 41 4-44 135-178 (212)
75 smart00734 ZnF_Rad18 Rad18-lik 27.5 53 0.0011 19.4 1.8 20 209-229 2-21 (26)
76 PF03107 C1_2: C1 domain; Int 26.5 32 0.0007 20.8 0.8 13 209-221 1-13 (30)
77 KOG2505|consensus 26.4 62 0.0013 32.8 3.1 35 208-242 66-100 (591)
78 KOG0796|consensus 25.9 52 0.0011 31.2 2.4 36 207-242 185-223 (319)
79 cd00464 SK Shikimate kinase (S 25.3 49 0.0011 26.4 1.9 21 4-24 92-112 (154)
80 COG5200 LUC7 U1 snRNP componen 24.6 70 0.0015 28.9 2.8 43 207-250 184-229 (258)
81 PRK13975 thymidylate kinase; P 23.9 86 0.0019 26.3 3.2 20 6-25 116-135 (196)
82 PF04423 Rad50_zn_hook: Rad50 23.1 79 0.0017 21.5 2.3 22 210-233 22-43 (54)
83 PRK03839 putative kinase; Prov 22.8 1.8E+02 0.0039 24.1 5.0 19 6-24 82-100 (180)
84 PRK14527 adenylate kinase; Pro 22.6 69 0.0015 27.1 2.4 20 6-25 114-133 (191)
85 cd01672 TMPK Thymidine monopho 22.0 82 0.0018 26.0 2.7 22 4-25 126-147 (200)
86 PRK14531 adenylate kinase; Pro 21.5 70 0.0015 27.0 2.2 19 6-24 110-128 (183)
87 PHA03136 thymidine kinase; Pro 21.3 82 0.0018 30.7 2.8 39 6-44 194-234 (378)
88 TIGR01360 aden_kin_iso1 adenyl 20.9 85 0.0018 25.9 2.6 20 5-24 108-127 (188)
No 1
>PLN02748 tRNA dimethylallyltransferase
Probab=100.00 E-value=8.8e-51 Score=394.44 Aligned_cols=224 Identities=21% Similarity=0.376 Sum_probs=166.5
Q ss_pred CCceEEEEEeCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcccccccCCCCCCcCCccccccHHHHHHHHhhhccCC
Q psy10921 2 ELNLKFTVNHLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYLMLSDQDR 81 (269)
Q Consensus 2 ~~~~l~~wL~~~~~vL~~RLd~RVd~Mi~~GLldEv~~l~~~~~~~~~~~~~~~d~~~gi~qaIGyKEf~~yL~~~~~~~ 81 (269)
+|++++|||++++++|++||++|||.||++||++||+.|+..+ .+++.|+|||||||||.+||..+....
T Consensus 225 ~~~~~~i~l~~~r~~L~~RI~~Rvd~Mle~GlleEv~~l~~~~----------~~~~~~~~qaIGykE~~~yL~~~~~~~ 294 (468)
T PLN02748 225 RFDCCFICVDADTAVLDRYVNQRVDCMIDAGLLDEVYDIYDPG----------ADYTRGLRQAIGVREFEDFLRLYLSRN 294 (468)
T ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcC----------CCCCcccceeEcHHHHHHHHHhccccc
Confidence 5899999999999999999999999999999999999999642 245689999999999999998542211
Q ss_pred CCCccccchhhhcccccch-hhcccCCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCeEEec
Q psy10921 82 QEPDYTKGIFQSIGFKEFH-NYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPPVYSLN 160 (269)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~l~eaie~~k~~TRqYAKRQ~tWir~~~l~~~~~~~~~i~~lD 160 (269)
+....+.|...+...+... ..|+.. ++.+.. .++++||+.||.+||||||||+|||++.. ... .+.+||||
T Consensus 295 ~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~l~eaie~ik~~Tr~yAKRQ~tw~~rl~-~~~---~~~i~~lD 366 (468)
T PLN02748 295 ENGELTSSSNNDKVMKENSRKILNFP-HDDKLK---ILLDEAIDQVKLNTRRLVRRQKRRLHRLN-TVF---GWNIHYID 366 (468)
T ss_pred ccccccccccccchhhhhhhcccccc-chhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHhhhh-hcc---cCCeeEee
Confidence 0000000000000001000 111111 122223 68999999999999999999999999642 111 26899999
Q ss_pred CCCc------chhhhhhHHHHHHHHHHHhccCCCCCCCccccccCCCCCCCCcccccccCcc-cccCHHHHHHHhhhhHH
Q psy10921 161 CTDL------TTWAQSVTAPALHIVQSYLDNRAPTGIEPLAQEYVDPSYYNAGTFNCDVCNR-LFIGQHQYEQHMNSVKH 233 (269)
Q Consensus 161 ~t~~------~~W~~~V~~~A~~iv~~fl~~~~p~~~~~l~~~~~~~~~~~~~~~~Ce~C~~-~~~ge~eW~~HlkSr~H 233 (269)
+|++ +.|.+.|++||++||++||++.+|. ..+.......+. +.|++|+||+|++ +++|++||++|++||+|
T Consensus 367 ~t~~~~~~~~~~W~~~V~~pa~~iv~~fL~~~~~~-~~~~~~~~~~~~-~~~~~~~Ce~C~~~~~~G~~eW~~Hlksr~H 444 (468)
T PLN02748 367 ATEAILCKSEESWNAKVVKPAVEIVRRFLSDDTSS-GPDASSGKSVSR-ELWTQYVCEACGNKVLRGAHEWEQHKQGRGH 444 (468)
T ss_pred chhhhhhccHhHHHHHhHHHHHHHHHHHHcCCCCC-CcCccccccccc-cccccccccCCCCcccCCHHHHHHHhcchHH
Confidence 9987 8999999999999999999997754 222211111223 6899999999997 99999999999999999
Q ss_pred HHHhHHHHHHhh
Q psy10921 234 RRMKVKMERQLQ 245 (269)
Q Consensus 234 rk~~kk~kk~~~ 245 (269)
|+++++.+|++.
T Consensus 445 k~~~~~~~k~~~ 456 (468)
T PLN02748 445 RKRVQRLKQKQT 456 (468)
T ss_pred HHHHhHHHhhhh
Confidence 999999988754
No 2
>PLN02165 adenylate isopentenyltransferase
Probab=100.00 E-value=9.9e-34 Score=264.73 Aligned_cols=147 Identities=22% Similarity=0.328 Sum_probs=118.3
Q ss_pred CCceEEEEEeCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcccccccCCCCCCcCCccccccHHHHHHHHhhhccCC
Q psy10921 2 ELNLKFTVNHLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYLMLSDQDR 81 (269)
Q Consensus 2 ~~~~l~~wL~~~~~vL~~RLd~RVd~Mi~~GLldEv~~l~~~~~~~~~~~~~~~d~~~gi~qaIGyKEf~~yL~~~~~~~ 81 (269)
+|++++|||++++++|++||++|||.||++||++||..|++... +.+++.|++||||||||.+||....+..
T Consensus 173 ~~~~~~i~l~~dr~~L~~RI~~Rvd~Ml~~GlldEv~~L~~~~~--------~~~~~~~~~qaIGYkE~~~yL~~~~~~~ 244 (334)
T PLN02165 173 RYDCCFIWVDVSEPVLFEYLSKRVDEMMDSGMFEELAEFYDPVK--------SGSEPLGIRKAIGVPEFDRYFKKYPPEN 244 (334)
T ss_pred CCCeEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccC--------CcccCCCceeEEcHHHHHHHHHhccccc
Confidence 58899999999999999999999999999999999999997522 1233479999999999999997432110
Q ss_pred CCCccccchhhhcccccchhhcccCCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCeEEecC
Q psy10921 82 QEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPPVYSLNC 161 (269)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~eaie~~k~~TRqYAKRQ~tWir~~~l~~~~~~~~~i~~lD~ 161 (269)
.. |. .+...+ .++++|++.++.+||||||||+||||+.. . ..++++|||+
T Consensus 245 ~~-----------g~-----------~~~~~~---~~l~e~ie~ik~~TrqYAKRQ~TWfR~~~--~---~~~~~~~lD~ 294 (334)
T PLN02165 245 KM-----------GK-----------WDQARK---AAYEEAVREIKENTCQLAKRQIEKIMKLK--S---AGWDIKRVDA 294 (334)
T ss_pred cC-----------Cc-----------cchhhh---hhHHHHHHHHHHHHHHHHHHHHHHhcCCc--c---cCCcEEEEec
Confidence 00 00 000012 47999999999999999999999999862 2 2379999999
Q ss_pred CCc---------------chhhhhhHHHHHHHHHHHhccC
Q psy10921 162 TDL---------------TTWAQSVTAPALHIVQSYLDNR 186 (269)
Q Consensus 162 t~~---------------~~W~~~V~~~A~~iv~~fl~~~ 186 (269)
|++ +.|.+.|.+||++|+.+|+.|+
T Consensus 295 t~~~~~~~~~~~~~~~~~~~w~~~v~~~~~~i~~~fl~~~ 334 (334)
T PLN02165 295 TASFRAVMRKKGKKKKWREIWEKDVLEPSVKIVKRFLVED 334 (334)
T ss_pred hhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHHhcCC
Confidence 976 7899999999999999999874
No 3
>KOG1384|consensus
Probab=99.97 E-value=6.5e-32 Score=249.32 Aligned_cols=190 Identities=23% Similarity=0.365 Sum_probs=141.7
Q ss_pred CCceEEEEEeCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcccccccCCCCCCcCCccccccHHHHHHHHhhhccCC
Q psy10921 2 ELNLKFTVNHLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYLMLSDQDR 81 (269)
Q Consensus 2 ~~~~l~~wL~~~~~vL~~RLd~RVd~Mi~~GLldEv~~l~~~~~~~~~~~~~~~d~~~gi~qaIGyKEf~~yL~~~~~~~ 81 (269)
+|++|+|||+++.++|.+||++|||.||++||+||+++||+.+..+... ..+++.|++|.|||++|++|+..
T Consensus 136 ryd~c~lWlda~~~VL~~~l~~RVD~Ml~~Gl~eE~~~f~~~~~s~~~~---~i~~~iGv~e~d~f~~~~~~~~~----- 207 (348)
T KOG1384|consen 136 RYDCCFLWLDADQAVLFERLDKRVDDMLESGLLEELRDFYDPYNSSYRS---GIRKAIGVPEFDGFKEFYPWLTD----- 207 (348)
T ss_pred ccceEEEEEecchHHHHHHHHHHHHHHHHcchHHHHHHHhhhhhcCccc---cchhccCcHHHhhhhhccccccc-----
Confidence 6999999999999999999999999999999999999999886644211 12344444444444444444421
Q ss_pred CCCccccchhhhcccccchhhcccCCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCeEEecC
Q psy10921 82 QEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPPVYSLNC 161 (269)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~eaie~~k~~TRqYAKRQ~tWir~~~l~~~~~~~~~i~~lD~ 161 (269)
..+.... .++++||+.||.+|+||||||.+||.+++++.. |.++.+|+
T Consensus 208 -------------------------k~d~~~~---~~l~~aie~iK~nT~~lakrQ~~~I~~l~~~~~----~~i~~vda 255 (348)
T KOG1384|consen 208 -------------------------KWDLARK---ELLEKAIEAIKENTRRLAKRQKRKIEKLFLPRK----WDIHRVDA 255 (348)
T ss_pred -------------------------hhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC----ccccccch
Confidence 0111223 579999999999999999999999999987652 78899998
Q ss_pred CCcch----------------hhhhhHHHHHHHHHHHhccCCCCCCCccccccCCCCCCCCcccccccCcc------ccc
Q psy10921 162 TDLTT----------------WAQSVTAPALHIVQSYLDNRAPTGIEPLAQEYVDPSYYNAGTFNCDVCNR------LFI 219 (269)
Q Consensus 162 t~~~~----------------W~~~V~~~A~~iv~~fl~~~~p~~~~~l~~~~~~~~~~~~~~~~Ce~C~~------~~~ 219 (269)
|.+.. |+..|..|...|++.|+.......- ....+..+.|++|.. +..
T Consensus 256 T~~~~~~~~~~s~~~~~~~~~w~~~v~~ps~~iv~~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 325 (348)
T KOG1384|consen 256 TEVFLFAKNRSSWFRIEQREIWNNPVKPPSAKIVKRFLDYYESEAR----------RLEGPESLAAEICLNDSLEACVVK 325 (348)
T ss_pred HHHHHHhhhhhHHhhhccchhhccccccchHHHHHHHHHhhhhhcc----------cccchHHHhHHHhhccchhHHHHH
Confidence 86532 6777888988999999875332200 113445677777752 478
Q ss_pred CHHHHHHHhhhhHHHHHhHHHH
Q psy10921 220 GQHQYEQHMNSVKHRRMKVKME 241 (269)
Q Consensus 220 ge~eW~~HlkSr~Hrk~~kk~k 241 (269)
|+..|..|..||+|+-.+++.+
T Consensus 326 ~~r~~~~~~~~k~~~s~~~r~~ 347 (348)
T KOG1384|consen 326 GERSKNRHEGSKSHKSCVKRNK 347 (348)
T ss_pred hhhhhhhhhccccccccccccC
Confidence 9999999999999998777653
No 4
>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....
Probab=99.96 E-value=1.5e-29 Score=229.47 Aligned_cols=102 Identities=26% Similarity=0.451 Sum_probs=93.0
Q ss_pred CCceEEEEEeCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcccccccCCCCCCcCCccccccHHHHHHHHhhhccCC
Q psy10921 2 ELNLKFTVNHLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYLMLSDQDR 81 (269)
Q Consensus 2 ~~~~l~~wL~~~~~vL~~RLd~RVd~Mi~~GLldEv~~l~~~~~~~~~~~~~~~d~~~gi~qaIGyKEf~~yL~~~~~~~ 81 (269)
+|++++|||++++++|++||++|||+||++||++||..|++.+.. .+.+++||||||||.+||.
T Consensus 151 ~~~~~~i~L~~~r~~L~~RI~~Rvd~Ml~~GlleEv~~L~~~~~~----------~~~~~~~aIGYkE~~~~l~------ 214 (253)
T PF01715_consen 151 RYDFLVIGLDRDREELYERINKRVDEMLEQGLLEEVRALLERGLP----------PDLPAMQAIGYKEFIDYLE------ 214 (253)
T ss_dssp SSEEEEEEEESSHHHHHHHHHHHHHHHHHTTHHHHHHHHHHTTGG----------TTSCGGGSTTHHHHHHHHT------
T ss_pred cCCeEEEEeCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCC----------CcchhceeeehHHHHHhhc------
Confidence 589999999999999999999999999999999999999987521 2389999999999999994
Q ss_pred CCCccccchhhhcccccchhhcccCCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCeEEecC
Q psy10921 82 QEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPPVYSLNC 161 (269)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~eaie~~k~~TRqYAKRQ~tWir~~~l~~~~~~~~~i~~lD~ 161 (269)
++ .++++|++.++.+||||||||+|||||+ ..++|+|.
T Consensus 215 ------------------------------g~---~~~~e~~e~i~~~TrqyAKRQ~TWfr~~---------~~~~w~d~ 252 (253)
T PF01715_consen 215 ------------------------------GE---ISLEEAIERIKTNTRQYAKRQRTWFRNQ---------PNIHWIDI 252 (253)
T ss_dssp ------------------------------TS---SCHHHHHHHHHHHHHHHHHHHHHHHHTT---------SSEEEEET
T ss_pred ------------------------------CC---CCHHHHHHHHHHHHHHHHHHHHHHhCCC---------CCCeeeeC
Confidence 34 7799999999999999999999999998 47999996
No 5
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=99.96 E-value=5.7e-29 Score=229.23 Aligned_cols=104 Identities=31% Similarity=0.440 Sum_probs=93.1
Q ss_pred CCceEEEEEeCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcccccccCCCCCCcCCccccccHHHHHHHHhhhccCC
Q psy10921 2 ELNLKFTVNHLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYLMLSDQDR 81 (269)
Q Consensus 2 ~~~~l~~wL~~~~~vL~~RLd~RVd~Mi~~GLldEv~~l~~~~~~~~~~~~~~~d~~~gi~qaIGyKEf~~yL~~~~~~~ 81 (269)
+|++++|||++|+++|++||++||+.||++||++||..|++... +.+.+++||||||||++||.
T Consensus 183 ~~~~~~i~l~~dr~~L~~rI~~Rv~~Mi~~Gl~eEv~~l~~~~~----------~~~~~~~~aIGYkE~~~~l~------ 246 (287)
T TIGR00174 183 FYDAVQIGLASSREPLHQRIEQRVHDMLESGLLAEVKALYAQYD----------LCDLPSIQAIGYKEFLLYLE------ 246 (287)
T ss_pred CCCeEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccC----------CcCCchhhhccHHHHHHHHc------
Confidence 58999999999999999999999999999999999999997521 12489999999999999993
Q ss_pred CCCccccchhhhcccccchhhcccCCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCeEEecC
Q psy10921 82 QEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPPVYSLNC 161 (269)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~eaie~~k~~TRqYAKRQ~tWir~~~l~~~~~~~~~i~~lD~ 161 (269)
++ .++++|++.++.+||||||||+||||++ .+++|+|+
T Consensus 247 ------------------------------g~---~~~~e~ie~i~~~Tr~yAKRQ~TWfR~~---------~~~~~~~~ 284 (287)
T TIGR00174 247 ------------------------------GT---VSLEDAIERIKCNTRQYAKRQLTWFRKW---------SDVLWLDS 284 (287)
T ss_pred ------------------------------CC---CCHHHHHHHHHHHHHHHHHHHHHHhCCC---------CCCEEeCC
Confidence 34 7899999999999999999999999997 36899998
Q ss_pred CC
Q psy10921 162 TD 163 (269)
Q Consensus 162 t~ 163 (269)
++
T Consensus 285 ~~ 286 (287)
T TIGR00174 285 TD 286 (287)
T ss_pred CC
Confidence 75
No 6
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=99.96 E-value=1.5e-28 Score=228.62 Aligned_cols=104 Identities=25% Similarity=0.402 Sum_probs=92.5
Q ss_pred CCceEEEEEeCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHh-hcccccccCCCCCCcCCccccccHHHHHHHHhhhccC
Q psy10921 2 ELNLKFTVNHLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQ-YNEDRIGKQLEPDYTKGIFQSIGFKEFHNYLMLSDQD 80 (269)
Q Consensus 2 ~~~~l~~wL~~~~~vL~~RLd~RVd~Mi~~GLldEv~~l~~~-~~~~~~~~~~~~d~~~gi~qaIGyKEf~~yL~~~~~~ 80 (269)
+|++++|||++|+++|++||++|||.|+++||++||..|++. +.. ..+++||||||||.+||.
T Consensus 187 ~~~~~~~~l~~dr~~L~~rI~~Rv~~Ml~~Gl~eEv~~l~~~~~~~-----------~~~~~~aIGykE~~~yl~----- 250 (307)
T PRK00091 187 PYRVLIIGLDPDREELYERINQRVDQMLEQGLLEEVRALLARGYLP-----------DLPAMRAIGYKELLAYLD----- 250 (307)
T ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHHHHHCcHHHHHHHHHHcCCCC-----------CCccceeecHHHHHHHHc-----
Confidence 589999999999999999999999999999999999999974 221 389999999999999993
Q ss_pred CCCCccccchhhhcccccchhhcccCCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCeEEec
Q psy10921 81 RQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPPVYSLN 160 (269)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~eaie~~k~~TRqYAKRQ~tWir~~~l~~~~~~~~~i~~lD 160 (269)
++ .++++|++.++.+||||||||+||||+++ .++|+|
T Consensus 251 -------------------------------g~---~s~~e~~e~i~~~Tr~yAKRQ~TWfr~~~---------~~~w~~ 287 (307)
T PRK00091 251 -------------------------------GE---ISLEEAIEKIKQATRQYAKRQLTWFRRQP---------DIHWLD 287 (307)
T ss_pred -------------------------------CC---CCHHHHHHHHHHHHHHHHHHHHHHhCCCC---------CCeeec
Confidence 33 67999999999999999999999999984 688999
Q ss_pred CCCc
Q psy10921 161 CTDL 164 (269)
Q Consensus 161 ~t~~ 164 (269)
.++.
T Consensus 288 ~~~~ 291 (307)
T PRK00091 288 LSPE 291 (307)
T ss_pred CCCc
Confidence 5443
No 7
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=99.95 E-value=8.3e-28 Score=222.67 Aligned_cols=105 Identities=22% Similarity=0.299 Sum_probs=91.6
Q ss_pred CCceEEEEEeCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcccccccCCCCCCcCCccccccHHHHHHHHhhhccCC
Q psy10921 2 ELNLKFTVNHLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYLMLSDQDR 81 (269)
Q Consensus 2 ~~~~l~~wL~~~~~vL~~RLd~RVd~Mi~~GLldEv~~l~~~~~~~~~~~~~~~d~~~gi~qaIGyKEf~~yL~~~~~~~ 81 (269)
.|++++|||++|+++|++||++|||.||++||++||..|+.... +.+.+++||||||||.+||.
T Consensus 185 ~~~~~~i~l~~~r~~L~~rI~~Rv~~Ml~~GlieEv~~l~~~~~----------~~~~~~~~aIGYkE~~~yl~------ 248 (300)
T PRK14729 185 FKNILAIGLKRPMEEMKSRIISRVNNMIDCGLLSEIKSLLGKGY----------NENTPAFKGIGYREFLLWKS------ 248 (300)
T ss_pred CCCeEEEEeCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcCC----------CCCCCcceeEcHHHHHHHHh------
Confidence 37899999999999999999999999999999999999996411 12489999999999999993
Q ss_pred CCCccccchhhhcccccchhhcccCCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCeEEecC
Q psy10921 82 QEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPPVYSLNC 161 (269)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~eaie~~k~~TRqYAKRQ~tWir~~~l~~~~~~~~~i~~lD~ 161 (269)
.++ .++++|++.++.+||||||||+||||+. +.++|+|.
T Consensus 249 -----------------------------~g~---~~l~e~~e~i~~~Tr~yAKRQ~TWfr~~---------~~~~w~~~ 287 (300)
T PRK14729 249 -----------------------------RPC---YMLNDIINLIVKNSFLYVKRQMTFFAKI---------PNVLWFHP 287 (300)
T ss_pred -----------------------------cCC---CCHHHHHHHHHHHHHHHHHHHHHHcCCC---------CCCeeecC
Confidence 123 6799999999999999999999999987 46889997
Q ss_pred CC
Q psy10921 162 TD 163 (269)
Q Consensus 162 t~ 163 (269)
++
T Consensus 288 ~~ 289 (300)
T PRK14729 288 DD 289 (300)
T ss_pred CC
Confidence 43
No 8
>PLN02840 tRNA dimethylallyltransferase
Probab=99.94 E-value=3.5e-26 Score=219.70 Aligned_cols=126 Identities=18% Similarity=0.286 Sum_probs=98.1
Q ss_pred CCceEEEEEeCChHHHHHHHHHHHHHHHH--hhHHHHHHHHHHh-hcccccccCCCCCCcCCccccccHHHHHHHHhhhc
Q psy10921 2 ELNLKFTVNHLNSEVLDKRLEGRVHTMIQ--NGLIEELLQFHRQ-YNEDRIGKQLEPDYTKGIFQSIGFKEFHNYLMLSD 78 (269)
Q Consensus 2 ~~~~l~~wL~~~~~vL~~RLd~RVd~Mi~--~GLldEv~~l~~~-~~~~~~~~~~~~d~~~gi~qaIGyKEf~~yL~~~~ 78 (269)
+|++++|||++++++|++||+.||+.||+ +||++||+.|++. +.++ ..+++||||||||++||....
T Consensus 231 ~y~~~~i~L~~dR~~Ly~RI~~Rvd~Ml~~~~GLleEV~~Ll~~g~~~~----------~~~a~~aIGYkE~~~yL~~~~ 300 (421)
T PLN02840 231 DYDFLCFFLSSPRLDLYRSIDLRCEEMLAGTNGILSEASWLLDLGLLPN----------SNSATRAIGYRQAMEYLLQCR 300 (421)
T ss_pred CCCeEEEEeCCCHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHcCCCcc----------ccchHHHhcHHHHHHHHHhhc
Confidence 48999999999999999999999999999 9999999999975 2211 258999999999999996321
Q ss_pred cCCCCCccccchhhhcccccchhhcccCCCccccccccccHHH---HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q psy10921 79 QDRQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNK---SLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPP 155 (269)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~e---aie~~k~~TRqYAKRQ~tWir~~~l~~~~~~~~~ 155 (269)
.. .|+ ..+++ +++.++.+||||||||+||||+. +.
T Consensus 301 ~~------------------------------~G~---~s~ee~~~~~e~i~~~TRqYAKRQ~TWFR~~---------~~ 338 (421)
T PLN02840 301 QN------------------------------GGE---SSPQEFLAFLSKFQTASRNFAKRQMTWFRNE---------PI 338 (421)
T ss_pred cc------------------------------CCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------CC
Confidence 10 123 55665 55999999999999999999987 46
Q ss_pred eEEecCCCcchhhhhhHHHHHHHHHHHhccC
Q psy10921 156 VYSLNCTDLTTWAQSVTAPALHIVQSYLDNR 186 (269)
Q Consensus 156 i~~lD~t~~~~W~~~V~~~A~~iv~~fl~~~ 186 (269)
++|+|.++. .+.+++.+..+..+.
T Consensus 339 ~~w~~~~~~-------~~~i~~~i~~~~~~~ 362 (421)
T PLN02840 339 YHWLDASQP-------LEKILQFIYDAYHSR 362 (421)
T ss_pred CeEecCCCC-------HHHHHHHHHHHHhcC
Confidence 899997543 223445555555433
No 9
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=3.3e-26 Score=212.02 Aligned_cols=104 Identities=31% Similarity=0.468 Sum_probs=94.3
Q ss_pred CCceEEEEEeCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHh-hcccccccCCCCCCcCCccccccHHHHHHHHhhhccC
Q psy10921 2 ELNLKFTVNHLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQ-YNEDRIGKQLEPDYTKGIFQSIGFKEFHNYLMLSDQD 80 (269)
Q Consensus 2 ~~~~l~~wL~~~~~vL~~RLd~RVd~Mi~~GLldEv~~l~~~-~~~~~~~~~~~~d~~~gi~qaIGyKEf~~yL~~~~~~ 80 (269)
+|++++|||.+++++|+.||+.|||.|+++||++||+.||.. +..+ .+++|+||||||.+||.
T Consensus 188 ~~~~~~~~l~~~r~~L~~rI~~R~d~Ml~~Gli~EV~~L~~~g~~~~-----------~~~~~~iGy~e~~~yl~----- 251 (308)
T COG0324 188 PYDILIIALAADREVLYERINRRVDAMLEQGLIEEVKALYARGLHLD-----------LPAMQAIGYKEILAYLD----- 251 (308)
T ss_pred CcceEEEEEeCCHHHHHHHHHHHHHHHHHccHHHHHHHHHhccCCcc-----------chHHHhcCHHHHHHHHh-----
Confidence 689999999999999999999999999999999999999986 4433 89999999999999993
Q ss_pred CCCCccccchhhhcccccchhhcccCCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCeEEec
Q psy10921 81 RQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPPVYSLN 160 (269)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~eaie~~k~~TRqYAKRQ~tWir~~~l~~~~~~~~~i~~lD 160 (269)
|. ..+++|++.++.+||||||||+|||||++ .+.|+|
T Consensus 252 -------------------------------g~---~~~~ea~~~~~~~TRqyAKRQ~TWfr~~~---------~~~w~~ 288 (308)
T COG0324 252 -------------------------------GG---ISLEEAIERIKTATRQYAKRQLTWFRNQL---------GVHWLD 288 (308)
T ss_pred -------------------------------CC---CCHHHHHHHHHHHHHHHHHHHHHHhccCc---------ccceec
Confidence 33 67999999999999999999999999984 688999
Q ss_pred CCCc
Q psy10921 161 CTDL 164 (269)
Q Consensus 161 ~t~~ 164 (269)
....
T Consensus 289 ~~~~ 292 (308)
T COG0324 289 SESP 292 (308)
T ss_pred cCCc
Confidence 8754
No 10
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=98.55 E-value=2.8e-08 Score=60.03 Aligned_cols=27 Identities=44% Similarity=0.949 Sum_probs=25.3
Q ss_pred ccccccCcccccCHHHHHHHhhhhHHH
Q psy10921 208 TFNCDVCNRLFIGQHQYEQHMNSVKHR 234 (269)
Q Consensus 208 ~~~Ce~C~~~~~ge~eW~~HlkSr~Hr 234 (269)
+|+|++|++.|.++.+|+.|++|++||
T Consensus 1 q~~C~~C~k~f~~~~~~~~H~~sk~Hk 27 (27)
T PF12171_consen 1 QFYCDACDKYFSSENQLKQHMKSKKHK 27 (27)
T ss_dssp -CBBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred CCCcccCCCCcCCHHHHHHHHccCCCC
Confidence 589999999999999999999999997
No 11
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=98.50 E-value=8.7e-08 Score=60.76 Aligned_cols=32 Identities=31% Similarity=0.618 Sum_probs=29.9
Q ss_pred ccccccCcccccCHHHHHHHhhhhHHHHHhHH
Q psy10921 208 TFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVK 239 (269)
Q Consensus 208 ~~~Ce~C~~~~~ge~eW~~HlkSr~Hrk~~kk 239 (269)
.|+|++|+++|.+..+|..|++|++|++++++
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~~ 34 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLKGKKHKKNVKK 34 (35)
T ss_pred CeEccccCCccCCHHHHHHHHChHHHHHHHHc
Confidence 58899999999999999999999999998875
No 12
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=98.17 E-value=1.1e-06 Score=51.60 Aligned_cols=25 Identities=44% Similarity=0.951 Sum_probs=24.2
Q ss_pred cccccCcccccCHHHHHHHhhhhHH
Q psy10921 209 FNCDVCNRLFIGQHQYEQHMNSVKH 233 (269)
Q Consensus 209 ~~Ce~C~~~~~ge~eW~~HlkSr~H 233 (269)
|+|++|++.+.++.+|++|++|++|
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s~~H 25 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRSKKH 25 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence 6899999999999999999999998
No 13
>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.
Probab=96.93 E-value=0.0009 Score=43.78 Aligned_cols=33 Identities=21% Similarity=0.450 Sum_probs=19.8
Q ss_pred cccccccCcccccCH--HHHHHHhhhhHHHHHhHH
Q psy10921 207 GTFNCDVCNRLFIGQ--HQYEQHMNSVKHRRMKVK 239 (269)
Q Consensus 207 ~~~~Ce~C~~~~~ge--~eW~~HlkSr~Hrk~~kk 239 (269)
.+|+||.|++.|..+ ..+..|..|.+|+.++++
T Consensus 2 ~ryyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~ 36 (38)
T PF06220_consen 2 PRYYCDYCKKYLTHDSPSIRKQHERGWKHKENVKR 36 (38)
T ss_dssp -S-B-TTT--B-S--SHHHHHHHT--THHHHHHHH
T ss_pred cCeecccccceecCCChHHHHHhhccHHHHHHHHH
Confidence 369999999998443 489999999999998764
No 14
>KOG0717|consensus
Probab=96.43 E-value=0.0024 Score=62.41 Aligned_cols=38 Identities=29% Similarity=0.611 Sum_probs=34.7
Q ss_pred ccccccCcccccCHHHHHHHhhhhHHHHHhHHHHHHhh
Q psy10921 208 TFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKMERQLQ 245 (269)
Q Consensus 208 ~~~Ce~C~~~~~ge~eW~~HlkSr~Hrk~~kk~kk~~~ 245 (269)
.++|-+|+++|-.+.+|..|.+|++|++++...++..+
T Consensus 292 ~lyC~vCnKsFKseKq~kNHEnSKKHkenv~eLrqemE 329 (508)
T KOG0717|consen 292 VLYCVVCNKSFKSEKQLKNHENSKKHKENVAELRQEME 329 (508)
T ss_pred ceEEeeccccccchHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999999999999999999887443
No 15
>KOG3408|consensus
Probab=96.00 E-value=0.0056 Score=49.80 Aligned_cols=37 Identities=27% Similarity=0.600 Sum_probs=34.3
Q ss_pred CCcccccccCcccccCHHHHHHHhhhhHHHHHhHHHH
Q psy10921 205 NAGTFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKME 241 (269)
Q Consensus 205 ~~~~~~Ce~C~~~~~ge~eW~~HlkSr~Hrk~~kk~k 241 (269)
...+|+|=.|.+-|+.+.....|.+|+.||+|+|..+
T Consensus 54 G~GqfyCi~CaRyFi~~~~l~~H~ktK~HKrRvK~l~ 90 (129)
T KOG3408|consen 54 GGGQFYCIECARYFIDAKALKTHFKTKVHKRRVKELR 90 (129)
T ss_pred CCceeehhhhhhhhcchHHHHHHHhccHHHHHHHhcc
Confidence 3479999999999999999999999999999999865
No 16
>KOG3032|consensus
Probab=95.57 E-value=0.013 Score=52.73 Aligned_cols=37 Identities=30% Similarity=0.536 Sum_probs=32.4
Q ss_pred CCCcccccccCcccccCHHHHHHHhhhhHHHHHhHHHH
Q psy10921 204 YNAGTFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKME 241 (269)
Q Consensus 204 ~~~~~~~Ce~C~~~~~ge~eW~~HlkSr~Hrk~~kk~k 241 (269)
+...+-+|-+|+..+- +.-|..|+.||+||-++-+.|
T Consensus 31 n~sgql~C~vCn~piK-p~lW~vHvnsKkHre~id~lK 67 (264)
T KOG3032|consen 31 NESGQLVCRVCNVPIK-PSLWDVHVNSKKHREAIDSLK 67 (264)
T ss_pred CCCCCeeEEEecCccc-HHHHHHHhccHHHHHHHHHHH
Confidence 4456889999998877 899999999999999988777
No 17
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=95.32 E-value=0.013 Score=33.31 Aligned_cols=22 Identities=23% Similarity=0.803 Sum_probs=20.7
Q ss_pred cccccCcccccCHHHHHHHhhh
Q psy10921 209 FNCDVCNRLFIGQHQYEQHMNS 230 (269)
Q Consensus 209 ~~Ce~C~~~~~ge~eW~~HlkS 230 (269)
|.|+.|++++.....+..|++.
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~ 22 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRR 22 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhH
Confidence 6899999999999999999986
No 18
>KOG4727|consensus
Probab=94.76 E-value=0.017 Score=49.64 Aligned_cols=33 Identities=30% Similarity=0.602 Sum_probs=29.3
Q ss_pred cccccccCcccccCHHHHHHHhhhhHHHHHhHH
Q psy10921 207 GTFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVK 239 (269)
Q Consensus 207 ~~~~Ce~C~~~~~ge~eW~~HlkSr~Hrk~~kk 239 (269)
.-|+|+||+-++---.++--|++++.|.+++.-
T Consensus 74 ~GyyCdVCdcvvKDSinflDHiNgKkHqrnlgm 106 (193)
T KOG4727|consen 74 GGYYCDVCDCVVKDSINFLDHINGKKHQRNLGM 106 (193)
T ss_pred CceeeeecceeehhhHHHHHHhccHHHHHHHhh
Confidence 569999999998888999999999999997643
No 19
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=94.32 E-value=0.033 Score=31.15 Aligned_cols=22 Identities=32% Similarity=0.868 Sum_probs=18.3
Q ss_pred cccccCcccccCHHHHHHHhhh
Q psy10921 209 FNCDVCNRLFIGQHQYEQHMNS 230 (269)
Q Consensus 209 ~~Ce~C~~~~~ge~eW~~HlkS 230 (269)
|.|++|+..+....+|..|+..
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~ 22 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRT 22 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHHHHh
Confidence 5799999999999999999874
No 20
>smart00586 ZnF_DBF Zinc finger in DBF-like proteins.
Probab=93.94 E-value=0.03 Score=38.72 Aligned_cols=29 Identities=31% Similarity=0.558 Sum_probs=23.4
Q ss_pred cccccccCcccccCHHHHHHHhhhhHHHHHhH
Q psy10921 207 GTFNCDVCNRLFIGQHQYEQHMNSVKHRRMKV 238 (269)
Q Consensus 207 ~~~~Ce~C~~~~~ge~eW~~HlkSr~Hrk~~k 238 (269)
+.-+||.|...+ ...+.|+.|++||+-..
T Consensus 4 k~GYCE~Cr~kf---d~l~~Hi~s~~Hr~FA~ 32 (49)
T smart00586 4 KPGYCENCREKY---DDLETHLLSEKHRRFAE 32 (49)
T ss_pred CCcccccHhHHH---hhHHHHhccHHHHHHHc
Confidence 567999999665 46889999999998554
No 21
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=93.72 E-value=0.043 Score=32.32 Aligned_cols=23 Identities=30% Similarity=0.702 Sum_probs=20.9
Q ss_pred ccccccCcccccCHHHHHHHhhh
Q psy10921 208 TFNCDVCNRLFIGQHQYEQHMNS 230 (269)
Q Consensus 208 ~~~Ce~C~~~~~ge~eW~~HlkS 230 (269)
.|.|+.|++.+.....|..|+++
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~ 23 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRS 23 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCT
T ss_pred CCCCCccCCccCChhHHHHHhHH
Confidence 37899999999999999999964
No 22
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=93.62 E-value=0.38 Score=43.37 Aligned_cols=99 Identities=18% Similarity=0.282 Sum_probs=65.3
Q ss_pred ceEEEEEeC-ChHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHhhcccccccCCCCCCcCCccccc-cHHHHHHHHhh
Q psy10921 4 NLKFTVNHL-NSEVLDKRLEGRVHTMIQN-----GLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSI-GFKEFHNYLML 76 (269)
Q Consensus 4 ~~l~~wL~~-~~~vL~~RLd~RVd~Mi~~-----GLldEv~~l~~~~~~~~~~~~~~~d~~~gi~qaI-GyKEf~~yL~~ 76 (269)
..-+.-+.. +++....|+-+||.+|+.- +||+|+..+...-. .+.++.+| ||+-.+.|...
T Consensus 117 ~w~i~rl~l~d~~~f~~ra~~Rv~~ML~p~~~~~Sll~EL~~lW~~p~------------~r~~ledIdGyr~~i~~a~~ 184 (233)
T PF01745_consen 117 RWHIRRLRLPDEEVFMARAKRRVRQMLRPDSSGPSLLEELVALWNDPA------------LRPILEDIDGYRYIIRFARK 184 (233)
T ss_dssp EEEEEE-----HHHHHHHHHHHHHHHHS--SSS--HHHHHHHHHTSTT------------HHHHHTTSTTHHHHHHHHHH
T ss_pred eEEEEEEECCChHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhCcc------------ccchHhhhccHHHHHHHHHH
Confidence 334444554 5789999999999999974 89999999995321 26677776 99999999875
Q ss_pred hccCCCCCccccchhhhcccccchhhcccCCCccccccccccHHHHHHHHHHHHHHHHHHHHHHH
Q psy10921 77 SDQDRQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWV 141 (269)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~eaie~~k~~TRqYAKRQ~tWi 141 (269)
..-..+. +.+ -.. ...++.+..|-..--.||..|.+=|
T Consensus 185 ~~v~~~~---------------------l~~---~~~---~~~~~Li~~ia~eY~~ha~~QEq~F 222 (233)
T PF01745_consen 185 HQVTPDQ---------------------LLS---IDL---DMLQELIEGIAEEYLEHAQWQEQEF 222 (233)
T ss_dssp TT--GGG---------------------CCG----TH---HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hCCCHHH---------------------HHH---hhH---HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4211100 000 011 4577788888888899999998743
No 23
>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding
Probab=93.06 E-value=0.068 Score=36.94 Aligned_cols=28 Identities=29% Similarity=0.609 Sum_probs=22.8
Q ss_pred cccccccCcccccCHHHHHHHhhhhHHHHHh
Q psy10921 207 GTFNCDVCNRLFIGQHQYEQHMNSVKHRRMK 237 (269)
Q Consensus 207 ~~~~Ce~C~~~~~ge~eW~~HlkSr~Hrk~~ 237 (269)
+.-+||.|...+ ...+.|+.|++||+-+
T Consensus 4 k~GYCE~C~~ky---~~l~~Hi~s~~Hr~FA 31 (49)
T PF07535_consen 4 KPGYCENCRVKY---DDLEEHIQSEKHRKFA 31 (49)
T ss_pred CCccCccccchh---hhHHHHhCCHHHHHHH
Confidence 567899999665 4689999999998754
No 24
>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]
Probab=92.77 E-value=0.062 Score=42.92 Aligned_cols=37 Identities=24% Similarity=0.488 Sum_probs=33.5
Q ss_pred CcccccccCcccccCHHHHHHHhhhhHHHHHhHHHHH
Q psy10921 206 AGTFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKMER 242 (269)
Q Consensus 206 ~~~~~Ce~C~~~~~ge~eW~~HlkSr~Hrk~~kk~kk 242 (269)
-.+++|-.|.+.|..+..--.|.+|+-||+++|-.+-
T Consensus 53 lGqhYCieCaryf~t~~aL~~HkkgkvHkRR~KelRe 89 (126)
T COG5112 53 LGQHYCIECARYFITEKALMEHKKGKVHKRRAKELRE 89 (126)
T ss_pred CceeeeehhHHHHHHHHHHHHHhccchhHHHHHHHhc
Confidence 3689999999999999999999999999999887653
No 25
>KOG2785|consensus
Probab=91.95 E-value=0.079 Score=50.84 Aligned_cols=36 Identities=28% Similarity=0.524 Sum_probs=33.2
Q ss_pred cccccccCcccccCHHHHHHHhhhhHHHHHhHHHHH
Q psy10921 207 GTFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKMER 242 (269)
Q Consensus 207 ~~~~Ce~C~~~~~ge~eW~~HlkSr~Hrk~~kk~kk 242 (269)
..++|++|++.+......+.|++||+|+..+++.-+
T Consensus 67 ~~~~c~~c~k~~~s~~a~~~hl~Sk~h~~~~~~~~r 102 (390)
T KOG2785|consen 67 SVVYCEACNKSFASPKAHENHLKSKKHVENLSNHQR 102 (390)
T ss_pred cceehHHhhccccChhhHHHHHHHhhcchhhhhhhc
Confidence 568999999999999999999999999999888666
No 26
>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=91.82 E-value=0.083 Score=50.36 Aligned_cols=36 Identities=22% Similarity=0.398 Sum_probs=32.1
Q ss_pred cccccccCcccccCHHHHHHHhhhhHHHHHhHHHHH
Q psy10921 207 GTFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKMER 242 (269)
Q Consensus 207 ~~~~Ce~C~~~~~ge~eW~~HlkSr~Hrk~~kk~kk 242 (269)
..++|.+|++.|-.-.-++.|+.|++|.|..+++.-
T Consensus 237 ~~~YC~~C~r~f~~~~VFe~Hl~gK~H~k~~~~~~~ 272 (470)
T COG5188 237 PKVYCVKCGREFSRSKVFEYHLEGKRHCKEGQGKEE 272 (470)
T ss_pred cceeeHhhhhHhhhhHHHHHHHhhhhhhhhhhhhhH
Confidence 578999999999888899999999999998877654
No 27
>smart00355 ZnF_C2H2 zinc finger.
Probab=91.02 E-value=0.21 Score=27.96 Aligned_cols=21 Identities=24% Similarity=0.803 Sum_probs=19.5
Q ss_pred cccccCcccccCHHHHHHHhh
Q psy10921 209 FNCDVCNRLFIGQHQYEQHMN 229 (269)
Q Consensus 209 ~~Ce~C~~~~~ge~eW~~Hlk 229 (269)
+.|+.|+..+.+...+..|++
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~ 21 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMR 21 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHH
Confidence 579999999999999999997
No 28
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=90.56 E-value=0.12 Score=38.79 Aligned_cols=31 Identities=29% Similarity=0.715 Sum_probs=26.2
Q ss_pred ccccccCcccccCHHHHHHHhhhhHHHHHhH
Q psy10921 208 TFNCDVCNRLFIGQHQYEQHMNSVKHRRMKV 238 (269)
Q Consensus 208 ~~~Ce~C~~~~~ge~eW~~HlkSr~Hrk~~k 238 (269)
.+.|.+|++.+.....+..|++++.|.+...
T Consensus 50 ~~~C~~C~~~f~s~~~l~~Hm~~~~H~~~~~ 80 (100)
T PF12756_consen 50 SFRCPYCNKTFRSREALQEHMRSKHHKKRNS 80 (100)
T ss_dssp SEEBSSSS-EESSHHHHHHHHHHTTTTC-S-
T ss_pred CCCCCccCCCCcCHHHHHHHHcCccCCCccc
Confidence 5899999999999999999999999987654
No 29
>KOG0227|consensus
Probab=89.34 E-value=0.25 Score=43.38 Aligned_cols=39 Identities=21% Similarity=0.434 Sum_probs=33.0
Q ss_pred CcccccccCcccccCHHHHHHHhhhhHHHHHhHHHHHHh
Q psy10921 206 AGTFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKMERQL 244 (269)
Q Consensus 206 ~~~~~Ce~C~~~~~ge~eW~~HlkSr~Hrk~~kk~kk~~ 244 (269)
-.+|.|-.|...-+.+..+..|.+||+|.-++.++-..+
T Consensus 51 ~G~yeCkLClT~H~ne~Syl~HtqGKKHq~Nlarraa~e 89 (222)
T KOG0227|consen 51 LGKYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAAKE 89 (222)
T ss_pred CcceeehhhhhhhcchhhhhhhhccchhhHHHHHHHHHH
Confidence 368999999999999999999999999998776554443
No 30
>PTZ00448 hypothetical protein; Provisional
Probab=88.31 E-value=0.4 Score=46.08 Aligned_cols=36 Identities=22% Similarity=0.383 Sum_probs=32.4
Q ss_pred ccccccCcccccCHHHHHHHhhhhHHHHHhHHHHHH
Q psy10921 208 TFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKMERQ 243 (269)
Q Consensus 208 ~~~Ce~C~~~~~ge~eW~~HlkSr~Hrk~~kk~kk~ 243 (269)
.++|..|+..|....+-..|.||==||+++|++-+.
T Consensus 314 ~~tC~~C~v~F~~~~~qR~H~KSDwHrYNLKRkl~g 349 (373)
T PTZ00448 314 MLLCRKCNIQLMDHNAFKQHYRSEWHIFNTKRNARK 349 (373)
T ss_pred CccccccccccCCHHHHHHHhhhhHHHHHHHHHhcC
Confidence 588999999999999999999999999999987543
No 31
>KOG3454|consensus
Probab=86.77 E-value=0.35 Score=41.44 Aligned_cols=43 Identities=23% Similarity=0.469 Sum_probs=30.8
Q ss_pred ccccccCcccccCH--HHHHHHhhhhHHHHHhHH-----HHHHhhhhhhh
Q psy10921 208 TFNCDVCNRLFIGQ--HQYEQHMNSVKHRRMKVK-----MERQLQHILRN 250 (269)
Q Consensus 208 ~~~Ce~C~~~~~ge--~eW~~HlkSr~Hrk~~kk-----~kk~~~~~~~~ 250 (269)
+|+||-|+.-++-+ ..-..|..||+|+.++|- .+..++.+++.
T Consensus 3 RYyCDYCdt~LthDslsvRK~H~~GrkH~~nvk~YY~k~~eeqAq~liD~ 52 (165)
T KOG3454|consen 3 RYYCDYCDTYLTHDSLSVRKTHCGGRKHKDNVKDYYQKWMEEQAQKLIDE 52 (165)
T ss_pred cchhhhhhhhhhcccHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999655543 478899999999998853 33444554443
No 32
>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised. It has two conserved sequence motifs: PIP and CEICG and contains a zinc-finger of the C2H2-type.; PDB: 4DGW_A.
Probab=85.10 E-value=0.27 Score=43.43 Aligned_cols=34 Identities=18% Similarity=0.539 Sum_probs=0.0
Q ss_pred CCcccccccCc-ccccCHHHHHHHhhhhHHHHHhH
Q psy10921 205 NAGTFNCDVCN-RLFIGQHQYEQHMNSVKHRRMKV 238 (269)
Q Consensus 205 ~~~~~~Ce~C~-~~~~ge~eW~~HlkSr~Hrk~~k 238 (269)
....|.||||+ .+..|....+.|...-+|-.-++
T Consensus 98 L~~ey~CEICGN~~Y~GrkaFekHF~E~rH~~Glr 132 (196)
T PF11931_consen 98 LGVEYKCEICGNQSYKGRKAFEKHFQEWRHAYGLR 132 (196)
T ss_dssp -----------------------------------
T ss_pred CCCeeeeEeCCCcceecHHHHHHhcChhHHHccCh
Confidence 45789999997 78889999999999999987443
No 33
>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]
Probab=80.98 E-value=1.4 Score=38.59 Aligned_cols=35 Identities=20% Similarity=0.507 Sum_probs=31.6
Q ss_pred CcccccccCcccccCHHHHHHHhhhhHHHHHhHHH
Q psy10921 206 AGTFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKM 240 (269)
Q Consensus 206 ~~~~~Ce~C~~~~~ge~eW~~HlkSr~Hrk~~kk~ 240 (269)
-.+|.|-.|..+-..+..+..|+.|++|+-++.++
T Consensus 51 ~Gk~vC~LC~T~H~~e~Sy~~H~~GKKH~~n~~rr 85 (222)
T COG5246 51 TGKYVCLLCKTKHLTEMSYVKHREGKKHKENSSRR 85 (222)
T ss_pred CCcEEeeeeccccccHHHHHHhhccchhhhhHHHH
Confidence 36899999999999999999999999999888766
No 34
>KOG2785|consensus
Probab=79.17 E-value=1.5 Score=42.23 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=32.7
Q ss_pred cccccccCcccccCHHHHHHHhhhhHHHHHhHHHHH
Q psy10921 207 GTFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKMER 242 (269)
Q Consensus 207 ~~~~Ce~C~~~~~ge~eW~~HlkSr~Hrk~~kk~kk 242 (269)
+.|+|..|...|-...+-..|.||==||+++||+-.
T Consensus 2 t~ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA 37 (390)
T KOG2785|consen 2 TGFTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVA 37 (390)
T ss_pred CcceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhh
Confidence 358999999999999999999999999999998643
No 35
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=72.96 E-value=4 Score=34.29 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=21.3
Q ss_pred CceEEEEEeCChHHHHHHHHHHH
Q psy10921 3 LNLKFTVNHLNSEVLDKRLEGRV 25 (269)
Q Consensus 3 ~~~l~~wL~~~~~vL~~RLd~RV 25 (269)
.++.++||+|+.++|.+|+.+|-
T Consensus 90 ~~~~~v~l~a~~~~l~~Rl~~R~ 112 (163)
T PRK11545 90 PNLSFIYLKGDFDVIESRLKARK 112 (163)
T ss_pred CCEEEEEEECCHHHHHHHHHhcc
Confidence 56899999999999999999996
No 36
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=72.53 E-value=3.3 Score=24.29 Aligned_cols=20 Identities=30% Similarity=0.777 Sum_probs=16.8
Q ss_pred cccccCcccccCHHHHHHHhh
Q psy10921 209 FNCDVCNRLFIGQHQYEQHMN 229 (269)
Q Consensus 209 ~~Ce~C~~~~~ge~eW~~Hlk 229 (269)
..|.+|++.| +....+.|++
T Consensus 3 ~~C~~CgR~F-~~~~l~~H~~ 22 (25)
T PF13913_consen 3 VPCPICGRKF-NPDRLEKHEK 22 (25)
T ss_pred CcCCCCCCEE-CHHHHHHHHH
Confidence 5699999999 6677999975
No 37
>PHA00616 hypothetical protein
Probab=70.45 E-value=2.5 Score=28.59 Aligned_cols=23 Identities=22% Similarity=0.546 Sum_probs=20.5
Q ss_pred ccccccCcccccCHHHHHHHhhh
Q psy10921 208 TFNCDVCNRLFIGQHQYEQHMNS 230 (269)
Q Consensus 208 ~~~Ce~C~~~~~ge~eW~~HlkS 230 (269)
.|.|..|++++.-..+...|+++
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~ 23 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLS 23 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHH
Confidence 37899999999999999999943
No 38
>PHA02768 hypothetical protein; Provisional
Probab=69.61 E-value=3.1 Score=29.43 Aligned_cols=23 Identities=17% Similarity=0.732 Sum_probs=20.4
Q ss_pred ccccccCcccccCHHHHHHHhhh
Q psy10921 208 TFNCDVCNRLFIGQHQYEQHMNS 230 (269)
Q Consensus 208 ~~~Ce~C~~~~~ge~eW~~HlkS 230 (269)
-|.|+.|++.|.-...-..|++.
T Consensus 5 ~y~C~~CGK~Fs~~~~L~~H~r~ 27 (55)
T PHA02768 5 GYECPICGEIYIKRKSMITHLRK 27 (55)
T ss_pred ccCcchhCCeeccHHHHHHHHHh
Confidence 47999999999988888999887
No 39
>PF04988 AKAP95: A-kinase anchoring protein 95 (AKAP95); InterPro: IPR007071 A-kinase (or PKA)-anchoring protein AKAP95 is implicated in mitotic chromosome condensation by acting as a targeting molecule for the condensin complex. The protein contains two zinc fingers which are thought to mediate the binding of AKAP95 to DNA [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=68.63 E-value=3.9 Score=35.11 Aligned_cols=25 Identities=36% Similarity=0.814 Sum_probs=21.4
Q ss_pred cccccCc-ccccCHHHHHHHhhhhHHH
Q psy10921 209 FNCDVCN-RLFIGQHQYEQHMNSVKHR 234 (269)
Q Consensus 209 ~~Ce~C~-~~~~ge~eW~~HlkSr~Hr 234 (269)
|+|.+|. +++.+ .+.+.|+.|+-|+
T Consensus 1 F~Cs~CKfrtf~~-~ei~~HleS~~H~ 26 (165)
T PF04988_consen 1 FTCSFCKFRTFEE-KEIEKHLESKFHK 26 (165)
T ss_pred CccceeeeecccH-HHHHHHHccchHH
Confidence 6899999 66655 5799999999999
No 40
>KOG2384|consensus
Probab=66.19 E-value=1.9 Score=38.31 Aligned_cols=32 Identities=22% Similarity=0.466 Sum_probs=25.3
Q ss_pred CCcccccccCcccccCHHHHHHHhhhhHHHHHh
Q psy10921 205 NAGTFNCDVCNRLFIGQHQYEQHMNSVKHRRMK 237 (269)
Q Consensus 205 ~~~~~~Ce~C~~~~~ge~eW~~HlkSr~Hrk~~ 237 (269)
....++||+|++.+ -+.-|..|..|-.|.=.+
T Consensus 81 ~e~lfyCE~Cd~~i-p~~~~snH~tSttHllsl 112 (223)
T KOG2384|consen 81 DEALFYCEVCDIYI-PNSKKSNHFTSTTHLLSL 112 (223)
T ss_pred CCccchhhhhhhhc-cCCCCccchhhHHHHhhh
Confidence 45789999999664 446799999999996544
No 41
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=65.14 E-value=6.1 Score=33.71 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=21.1
Q ss_pred CceEEEEEeCChHHHHHHHHHHH
Q psy10921 3 LNLKFTVNHLNSEVLDKRLEGRV 25 (269)
Q Consensus 3 ~~~l~~wL~~~~~vL~~RLd~RV 25 (269)
.++.+|||+++.++|.+|+.+|-
T Consensus 98 ~~~~~v~l~a~~~~l~~Rl~~R~ 120 (176)
T PRK09825 98 PNVHFLWLDGDYETILARMQRRA 120 (176)
T ss_pred CCEEEEEEeCCHHHHHHHHhccc
Confidence 46789999999999999999996
No 42
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=63.19 E-value=4.8 Score=36.10 Aligned_cols=35 Identities=23% Similarity=0.590 Sum_probs=25.4
Q ss_pred cccccccCcccccCHHHHHHHhhhhHHHHHhHHHHH
Q psy10921 207 GTFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKMER 242 (269)
Q Consensus 207 ~~~~Ce~C~~~~~ge~eW~~HlkSr~Hrk~~kk~kk 242 (269)
.+|.|.+|++.|.|.+=|..||.. +|-=.+...++
T Consensus 76 ~K~~C~lc~KlFkg~eFV~KHI~n-KH~e~ve~~~~ 110 (214)
T PF04959_consen 76 DKWRCPLCGKLFKGPEFVRKHIFN-KHPEKVEEVKK 110 (214)
T ss_dssp EEEEE-SSS-EESSHHHHHHHHHH-H-HHHHHHHHH
T ss_pred CEECCCCCCcccCChHHHHHHHhh-cCHHHHHHHHH
Confidence 469999999999999999999986 46655554443
No 43
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=62.10 E-value=9.8 Score=27.16 Aligned_cols=26 Identities=23% Similarity=0.543 Sum_probs=23.2
Q ss_pred CCCcccccccCcccccCHHHHHHHhh
Q psy10921 204 YNAGTFNCDVCNRLFIGQHQYEQHMN 229 (269)
Q Consensus 204 ~~~~~~~Ce~C~~~~~ge~eW~~Hlk 229 (269)
+...-..|.-|+.+|.-...+..|+.
T Consensus 13 DGE~~lrCPRC~~~FR~~K~Y~RHVN 38 (65)
T COG4049 13 DGEEFLRCPRCGMVFRRRKDYIRHVN 38 (65)
T ss_pred CCceeeeCCchhHHHHHhHHHHHHhh
Confidence 56678899999999999999999985
No 44
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=59.86 E-value=8.2 Score=27.05 Aligned_cols=27 Identities=11% Similarity=0.397 Sum_probs=18.9
Q ss_pred CCcccccccCcccccCHHHHHHHhhhh
Q psy10921 205 NAGTFNCDVCNRLFIGQHQYEQHMNSV 231 (269)
Q Consensus 205 ~~~~~~Ce~C~~~~~ge~eW~~HlkSr 231 (269)
.....+|.+|+.++.-..+-..|+..+
T Consensus 21 S~~PatCP~C~a~~~~srnLrRHle~~ 47 (54)
T PF09237_consen 21 SEQPATCPICGAVIRQSRNLRRHLEIR 47 (54)
T ss_dssp TS--EE-TTT--EESSHHHHHHHHHHH
T ss_pred cCCCCCCCcchhhccchhhHHHHHHHH
Confidence 446789999999999999999998754
No 45
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=57.08 E-value=5.6 Score=23.32 Aligned_cols=13 Identities=23% Similarity=0.828 Sum_probs=10.9
Q ss_pred cccccccCccccc
Q psy10921 207 GTFNCDVCNRLFI 219 (269)
Q Consensus 207 ~~~~Ce~C~~~~~ 219 (269)
+.|.|+.|++.+.
T Consensus 13 k~~~C~~C~k~F~ 25 (26)
T PF13465_consen 13 KPYKCPYCGKSFS 25 (26)
T ss_dssp SSEEESSSSEEES
T ss_pred CCCCCCCCcCeeC
Confidence 6799999998764
No 46
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=55.22 E-value=12 Score=31.15 Aligned_cols=21 Identities=33% Similarity=0.411 Sum_probs=19.3
Q ss_pred ceEEEEEeCChHHHHHHHHHH
Q psy10921 4 NLKFTVNHLNSEVLDKRLEGR 24 (269)
Q Consensus 4 ~~l~~wL~~~~~vL~~RLd~R 24 (269)
++++|||+++.+++.+||..|
T Consensus 111 ~~~~i~l~~~~~~~~~Rl~~R 131 (179)
T TIGR02322 111 NLLVVNITASPDVLAQRLAAR 131 (179)
T ss_pred CcEEEEEECCHHHHHHHHHHc
Confidence 568899999999999999988
No 47
>KOG4722|consensus
Probab=52.57 E-value=8 Score=38.15 Aligned_cols=34 Identities=21% Similarity=0.388 Sum_probs=29.2
Q ss_pred cccccccCcccccCHHHHHHHhhhhHHHHHhHHH
Q psy10921 207 GTFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKM 240 (269)
Q Consensus 207 ~~~~Ce~C~~~~~ge~eW~~HlkSr~Hrk~~kk~ 240 (269)
.+..|..|+..+..+.--=.|++||+|..++...
T Consensus 492 rkkqcslcnvlissevylfshvkgrkhqqal~e~ 525 (672)
T KOG4722|consen 492 RKKQCSLCNVLISSEVYLFSHVKGRKHQQALNEL 525 (672)
T ss_pred hhhccchhhhhhhhhhhhhhhhcchhHHHHHHHH
Confidence 4568999999988888888999999999877654
No 48
>KOG1384|consensus
Probab=49.74 E-value=13 Score=35.62 Aligned_cols=181 Identities=14% Similarity=0.127 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHHHHhhHH-HHHHHHHHhhcccccccCCCCCCcCCccccccHHHHHHHHhhhccCCCCCccccchhhh
Q psy10921 15 EVLDKRLEGRVHTMIQNGLI-EELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYLMLSDQDRQEPDYTKGIFQS 93 (269)
Q Consensus 15 ~vL~~RLd~RVd~Mi~~GLl-dEv~~l~~~~~~~~~~~~~~~d~~~gi~qaIGyKEf~~yL~~~~~~~~~~~~~~~~~~~ 93 (269)
++-..=|..|+++-++.=|- ..+.++++.|..- ..++..|+.++||+.||..|+..+.
T Consensus 145 da~~~VL~~~l~~RVD~Ml~~Gl~eE~~~f~~~~------~s~~~~~i~~~iGv~e~d~f~~~~~--------------- 203 (348)
T KOG1384|consen 145 DADQAVLFERLDKRVDDMLESGLLEELRDFYDPY------NSSYRSGIRKAIGVPEFDGFKEFYP--------------- 203 (348)
T ss_pred ecchHHHHHHHHHHHHHHHHcchHHHHHHHhhhh------hcCccccchhccCcHHHhhhhhccc---------------
Confidence 34456788999999987553 2677888777643 5678899999999999999996431
Q ss_pred cccccchhhcccCCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCeEEecCCCcchhhhh-hH
Q psy10921 94 IGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPPVYSLNCTDLTTWAQS-VT 172 (269)
Q Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~~~l~eaie~~k~~TRqYAKRQ~tWir~~~l~~~~~~~~~i~~lD~t~~~~W~~~-V~ 172 (269)
.... +.-..-.+.+..++++--.++.+-.+++. .. |-.+-... .|.=. |-
T Consensus 204 ----------------~~~~---k~d~~~~~~l~~aie~iK~nT~~lakrQ~-~~-------I~~l~~~~--~~~i~~vd 254 (348)
T KOG1384|consen 204 ----------------WLTD---KWDLARKELLEKAIEAIKENTRRLAKRQK-RK-------IEKLFLPR--KWDIHRVD 254 (348)
T ss_pred ----------------cccc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-------HHHhhcCC--Cccccccc
Confidence 0222 33334445677788877777777777653 11 11110110 13211 11
Q ss_pred HHHHHHH---H--HH-hccCCCCCCCccccccCCCCC--CCCcccccccCcccccCHHHHHHHhhhhHHHHHhHHHHHHh
Q psy10921 173 APALHIV---Q--SY-LDNRAPTGIEPLAQEYVDPSY--YNAGTFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKMERQL 244 (269)
Q Consensus 173 ~~A~~iv---~--~f-l~~~~p~~~~~l~~~~~~~~~--~~~~~~~Ce~C~~~~~ge~eW~~HlkSr~Hrk~~kk~kk~~ 244 (269)
.-++... + .| ..+..+ .+.....++. ..--...|+.|++-+.+...|..|+.++.|..+...+..+.
T Consensus 255 aT~~~~~~~~~~s~~~~~~~~~-----w~~~v~~ps~~iv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 329 (348)
T KOG1384|consen 255 ATEVFLFAKNRSSWFRIEQREI-----WNNPVKPPSAKIVKRFLDYYESEARRLEGPESLAAEICLNDSLEACVVKGERS 329 (348)
T ss_pred hHHHHHHhhhhhHHhhhccchh-----hccccccchHHHHHHHHHhhhhhcccccchHHHhHHHhhccchhHHHHHhhhh
Confidence 1111111 0 00 111111 1111111110 01134579999999999999999999999999998888887
Q ss_pred hhhhhh
Q psy10921 245 QHILRN 250 (269)
Q Consensus 245 ~~~~~~ 250 (269)
.+.+-.
T Consensus 330 ~~~~~~ 335 (348)
T KOG1384|consen 330 KNRHEG 335 (348)
T ss_pred hhhhhc
Confidence 775543
No 49
>KOG2636|consensus
Probab=44.23 E-value=14 Score=36.63 Aligned_cols=30 Identities=23% Similarity=0.796 Sum_probs=27.6
Q ss_pred CcccccccCc-ccccCHHHHHHHhhhhHHHH
Q psy10921 206 AGTFNCDVCN-RLFIGQHQYEQHMNSVKHRR 235 (269)
Q Consensus 206 ~~~~~Ce~C~-~~~~ge~eW~~HlkSr~Hrk 235 (269)
...|.||||+ .+..|....+.|..-=+|-+
T Consensus 399 ~~ey~CEICGNy~Y~GrkaF~RHF~EwRH~h 429 (497)
T KOG2636|consen 399 DIEYNCEICGNYVYKGRKAFDRHFNEWRHAH 429 (497)
T ss_pred CcccceeeccCccccCcHHHHHHhHHHHHhh
Confidence 4788999998 99999999999999999976
No 50
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=43.52 E-value=17 Score=33.31 Aligned_cols=31 Identities=19% Similarity=0.521 Sum_probs=23.4
Q ss_pred cccccccCcccc-cCHHH--HHHHhhhhHHHHHh
Q psy10921 207 GTFNCDVCNRLF-IGQHQ--YEQHMNSVKHRRMK 237 (269)
Q Consensus 207 ~~~~Ce~C~~~~-~ge~e--W~~HlkSr~Hrk~~ 237 (269)
+..+|+|||-.+ +++.+ -..|+.||-|..=+
T Consensus 189 kl~VCeVCGA~Ls~~D~d~RladH~~GK~HlGy~ 222 (254)
T PF03194_consen 189 KLEVCEVCGAFLSVGDNDRRLADHFGGKQHLGYA 222 (254)
T ss_pred CccchhhhhhHHhccchHHHHHHHhccchhhhHH
Confidence 568999999543 55543 78999999998633
No 51
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=43.49 E-value=26 Score=29.27 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=21.9
Q ss_pred CceEEEEEeCChHHHHHHHHHHHHH
Q psy10921 3 LNLKFTVNHLNSEVLDKRLEGRVHT 27 (269)
Q Consensus 3 ~~~l~~wL~~~~~vL~~RLd~RVd~ 27 (269)
.++.++|+.|+.++|.+|+.+|-+.
T Consensus 110 ~~~~~v~l~~~~~~l~~R~~~R~~~ 134 (175)
T cd00227 110 LDVLWVGVRCPGEVAEGRETARGDR 134 (175)
T ss_pred CCEEEEEEECCHHHHHHHHHhcCCc
Confidence 3678999999999999999998654
No 52
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=43.37 E-value=34 Score=28.84 Aligned_cols=25 Identities=16% Similarity=-0.025 Sum_probs=21.1
Q ss_pred ceEEEEEeCChHHHHHHHHHHHHHH
Q psy10921 4 NLKFTVNHLNSEVLDKRLEGRVHTM 28 (269)
Q Consensus 4 ~~l~~wL~~~~~vL~~RLd~RVd~M 28 (269)
+-++|+|+++.++..+|+.+|-..+
T Consensus 125 pd~~i~l~~~~~~~~~Ri~~R~r~~ 149 (193)
T cd01673 125 PDLVIYLDASPETCLKRIKKRGRPE 149 (193)
T ss_pred CCEEEEEeCCHHHHHHHHHhcCcHh
Confidence 3478999999999999999987654
No 53
>KOG3288|consensus
Probab=42.50 E-value=12 Score=34.61 Aligned_cols=27 Identities=30% Similarity=0.607 Sum_probs=24.6
Q ss_pred ccccccCcccccCHHHHHHHhhhhHHH
Q psy10921 208 TFNCDVCNRLFIGQHQYEQHMNSVKHR 234 (269)
Q Consensus 208 ~~~Ce~C~~~~~ge~eW~~HlkSr~Hr 234 (269)
.-.|-+|+..++|+.+=..|-++-.|.
T Consensus 276 tlRC~~Cq~glvGq~ea~eHA~~TGH~ 302 (307)
T KOG3288|consen 276 TLRCMVCQMGLVGQKEAAEHAKATGHV 302 (307)
T ss_pred EEEeeecccceeeHHHHHHHHHhcCCC
Confidence 457999999999999999999999884
No 54
>KOG0150|consensus
Probab=42.33 E-value=19 Score=34.08 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=25.1
Q ss_pred cccccccCcccc-cCHHHHHHHhhhhHHHHHhHH
Q psy10921 207 GTFNCDVCNRLF-IGQHQYEQHMNSVKHRRMKVK 239 (269)
Q Consensus 207 ~~~~Ce~C~~~~-~ge~eW~~HlkSr~Hrk~~kk 239 (269)
.+++|+.|..-+ .....=..|-+|++|+-+|.+
T Consensus 9 ~kkfCdyCKiWi~dN~~Sv~~He~GkrHke~V~K 42 (336)
T KOG0150|consen 9 PKKFCDYCKIWIKDNPASVRFHERGKRHKENVAK 42 (336)
T ss_pred cchhhhhhhhhhcCChHHHHhHhhhhHHHHHHHH
Confidence 468999998532 334467789999999988865
No 55
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=39.79 E-value=34 Score=27.47 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=20.5
Q ss_pred CceEEEEEeCChHHHHHHHHHHH
Q psy10921 3 LNLKFTVNHLNSEVLDKRLEGRV 25 (269)
Q Consensus 3 ~~~l~~wL~~~~~vL~~RLd~RV 25 (269)
+++.++|+.++.+++.+|+..|-
T Consensus 97 ~~~~~v~l~~~~~~~~~R~~~R~ 119 (150)
T cd02021 97 PRVRFVHLDGPREVLAERLAARK 119 (150)
T ss_pred CCEEEEEEECCHHHHHHHHHhcc
Confidence 46789999999999999999993
No 56
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=39.69 E-value=34 Score=27.97 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.3
Q ss_pred CceEEEEEeCChHHHHHHHHHHH
Q psy10921 3 LNLKFTVNHLNSEVLDKRLEGRV 25 (269)
Q Consensus 3 ~~~l~~wL~~~~~vL~~RLd~RV 25 (269)
.++.++||+++.+++.+|+..|.
T Consensus 93 ~~~~~i~l~~~~e~~~~R~~~R~ 115 (163)
T TIGR01313 93 PNLHFIYLSGDKDVILERMKARK 115 (163)
T ss_pred CCEEEEEEeCCHHHHHHHHHhcc
Confidence 35678999999999999999995
No 57
>PHA00732 hypothetical protein
Probab=39.24 E-value=23 Score=26.66 Aligned_cols=22 Identities=23% Similarity=0.551 Sum_probs=18.9
Q ss_pred cccccCcccccCHHHHHHHhhh
Q psy10921 209 FNCDVCNRLFIGQHQYEQHMNS 230 (269)
Q Consensus 209 ~~Ce~C~~~~~ge~eW~~HlkS 230 (269)
|.|+.|++.+......+.|+++
T Consensus 2 y~C~~Cgk~F~s~s~Lk~H~r~ 23 (79)
T PHA00732 2 FKCPICGFTTVTLFALKQHARR 23 (79)
T ss_pred ccCCCCCCccCCHHHHHHHhhc
Confidence 6799999999998899998763
No 58
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=37.93 E-value=28 Score=19.43 Aligned_cols=21 Identities=14% Similarity=0.529 Sum_probs=14.8
Q ss_pred cccccCcccccCHHHHHHHhhh
Q psy10921 209 FNCDVCNRLFIGQHQYEQHMNS 230 (269)
Q Consensus 209 ~~Ce~C~~~~~ge~eW~~HlkS 230 (269)
|.|..|+=+.. ...-..|++.
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~ 21 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKR 21 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHH
T ss_pred CCCCCCCCcCC-HHHHHHHHHh
Confidence 57999996666 7788888764
No 59
>KOG3347|consensus
Probab=37.08 E-value=31 Score=29.80 Aligned_cols=20 Identities=30% Similarity=0.247 Sum_probs=18.3
Q ss_pred EEEEEeCChHHHHHHHHHHH
Q psy10921 6 KFTVNHLNSEVLDKRLEGRV 25 (269)
Q Consensus 6 l~~wL~~~~~vL~~RLd~RV 25 (269)
++|.|.||-++|+.||..|.
T Consensus 95 lVvVLr~~~s~LY~RL~sRg 114 (176)
T KOG3347|consen 95 LVVVLRTPNSVLYDRLKSRG 114 (176)
T ss_pred EEEEEecCchHHHHHHHHcC
Confidence 57789999999999999997
No 60
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=36.88 E-value=32 Score=26.88 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=21.6
Q ss_pred cccccccCcccccCHHHHHHHhhhhHHHH
Q psy10921 207 GTFNCDVCNRLFIGQHQYEQHMNSVKHRR 235 (269)
Q Consensus 207 ~~~~Ce~C~~~~~ge~eW~~HlkSr~Hrk 235 (269)
.--.|-.|.-.+.- .++..||+++-|..
T Consensus 10 ~vlIC~~C~~av~~-~~v~~HL~~~H~~~ 37 (109)
T PF12013_consen 10 RVLICRQCQYAVQP-SEVESHLRKRHHIL 37 (109)
T ss_pred CEEEeCCCCcccCc-hHHHHHHHHhcccc
Confidence 55689999855444 78999999977654
No 61
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=34.82 E-value=35 Score=29.81 Aligned_cols=19 Identities=42% Similarity=0.545 Sum_probs=17.3
Q ss_pred EEEEEeCChHHHHHHHHHH
Q psy10921 6 KFTVNHLNSEVLDKRLEGR 24 (269)
Q Consensus 6 l~~wL~~~~~vL~~RLd~R 24 (269)
++|.|.|++++|++||..|
T Consensus 85 lVvVLR~~p~~L~~RLk~R 103 (180)
T COG1936 85 LVVVLRADPEVLYERLKGR 103 (180)
T ss_pred EEEEEcCCHHHHHHHHHHc
Confidence 6788999999999999877
No 62
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=33.66 E-value=50 Score=27.92 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=18.7
Q ss_pred ceEEEEEeCChHHHHHHHHHH
Q psy10921 4 NLKFTVNHLNSEVLDKRLEGR 24 (269)
Q Consensus 4 ~~l~~wL~~~~~vL~~RLd~R 24 (269)
+..+|||+++.++|.+||..|
T Consensus 111 ~~~vi~l~~s~e~l~~RL~~R 131 (186)
T PRK10078 111 ALLPVCLQVSPEILRQRLENR 131 (186)
T ss_pred CEEEEEEeCCHHHHHHHHHHh
Confidence 467899999999999999887
No 63
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=33.12 E-value=53 Score=28.29 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=20.8
Q ss_pred CCceEEEEEeCChHHHHHHHHHHHHH
Q psy10921 2 ELNLKFTVNHLNSEVLDKRLEGRVHT 27 (269)
Q Consensus 2 ~~~~l~~wL~~~~~vL~~RLd~RVd~ 27 (269)
.|++++++|.|+.++|.+|=..|=|.
T Consensus 108 ~~~vl~VgV~Cpleil~~RE~~RgDR 133 (174)
T PF07931_consen 108 GLPVLFVGVRCPLEILERRERARGDR 133 (174)
T ss_dssp TS-EEEEEEE--HHHHHHHHHHHTSS
T ss_pred CCceEEEEEECCHHHHHHHHHhcCCc
Confidence 47899999999999999999999885
No 64
>KOG3792|consensus
Probab=32.65 E-value=20 Score=37.45 Aligned_cols=31 Identities=26% Similarity=0.501 Sum_probs=28.1
Q ss_pred CcccccccCcccccCHHHHHHHhhhhHHHHH
Q psy10921 206 AGTFNCDVCNRLFIGQHQYEQHMNSVKHRRM 236 (269)
Q Consensus 206 ~~~~~Ce~C~~~~~ge~eW~~HlkSr~Hrk~ 236 (269)
-+.++|++|...+.|..-|.+|++.-+|+++
T Consensus 191 aqL~~~kw~k~~a~G~qs~re~lr~~r~l~k 221 (816)
T KOG3792|consen 191 AQLHYCKWCKISAAGPQTYREHLRGQKHLKK 221 (816)
T ss_pred HHhhhhHHHHHhccccHHHHHHHHHHHHHHh
Confidence 3678999999999999999999999999763
No 65
>PRK05541 adenylylsulfate kinase; Provisional
Probab=32.37 E-value=29 Score=28.87 Aligned_cols=20 Identities=15% Similarity=-0.105 Sum_probs=16.9
Q ss_pred eEEEEEeCChHHHHHHHHHH
Q psy10921 5 LKFTVNHLNSEVLDKRLEGR 24 (269)
Q Consensus 5 ~l~~wL~~~~~vL~~RLd~R 24 (269)
.+++||+++.+++.+|+..+
T Consensus 103 ~~~v~l~~~~e~~~~R~~~~ 122 (176)
T PRK05541 103 YFEVYLKCDMEELIRRDQKG 122 (176)
T ss_pred eEEEEEeCCHHHHHHhchhh
Confidence 46899999999999998654
No 66
>KOG2837|consensus
Probab=30.84 E-value=8.9 Score=35.65 Aligned_cols=31 Identities=19% Similarity=0.434 Sum_probs=28.3
Q ss_pred cccccccCcccccCHHHHHHHhhhhHHHHHh
Q psy10921 207 GTFNCDVCNRLFIGQHQYEQHMNSVKHRRMK 237 (269)
Q Consensus 207 ~~~~Ce~C~~~~~ge~eW~~HlkSr~Hrk~~ 237 (269)
..++|.+|.+-|+.+.-+.-|..|-.|.+.+
T Consensus 24 lRwyCqmCQkQcrDeNGFkCH~~SeSHqRql 54 (309)
T KOG2837|consen 24 LRWYCQMCQKQCRDENGFKCHTMSESHQRQL 54 (309)
T ss_pred HHHHHHHHHHHhccccccccccCCHHHHHHH
Confidence 4689999999999999999999999998754
No 67
>PRK13808 adenylate kinase; Provisional
Probab=30.74 E-value=25 Score=33.57 Aligned_cols=24 Identities=29% Similarity=0.232 Sum_probs=21.1
Q ss_pred eEEEEEeCChHHHHHHHHHHHHHH
Q psy10921 5 LKFTVNHLNSEVLDKRLEGRVHTM 28 (269)
Q Consensus 5 ~l~~wL~~~~~vL~~RLd~RVd~M 28 (269)
-++|+|+++.+++-+||..|...|
T Consensus 108 DlVI~LDVp~evll~Rl~~R~~~~ 131 (333)
T PRK13808 108 DAVVELRVNEGALLARVETRVAEM 131 (333)
T ss_pred CeEEEEECCHHHHHHHHHcCcccc
Confidence 368999999999999999998765
No 68
>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=30.13 E-value=27 Score=33.81 Aligned_cols=30 Identities=20% Similarity=0.736 Sum_probs=27.2
Q ss_pred CcccccccCc-ccccCHHHHHHHhhhhHHHH
Q psy10921 206 AGTFNCDVCN-RLFIGQHQYEQHMNSVKHRR 235 (269)
Q Consensus 206 ~~~~~Ce~C~-~~~~ge~eW~~HlkSr~Hrk 235 (269)
-.-|.||+|+ .+..|-.-++.|..--+|=+
T Consensus 372 d~ef~CEICgNyvy~GR~~FdrHF~E~rHiy 402 (470)
T COG5188 372 DIEFECEICGNYVYYGRDRFDRHFEEDRHIY 402 (470)
T ss_pred CcceeeeecccccccchHHHHhhhhhhhhhh
Confidence 3678999998 89999999999999999976
No 69
>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2.7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....
Probab=30.07 E-value=43 Score=27.49 Aligned_cols=28 Identities=11% Similarity=0.041 Sum_probs=21.1
Q ss_pred eEEEEEeCChHHHHHHHHHHHHHHHHhhH
Q psy10921 5 LKFTVNHLNSEVLDKRLEGRVHTMIQNGL 33 (269)
Q Consensus 5 ~l~~wL~~~~~vL~~RLd~RVd~Mi~~GL 33 (269)
-+++.|+++++++.+||.+|=..+ +.|+
T Consensus 69 dl~IYL~~~~e~~~~RI~kRgR~~-E~~i 96 (146)
T PF01712_consen 69 DLIIYLDASPETCLERIKKRGREE-EKNI 96 (146)
T ss_dssp SEEEEEE--HHHHHHHHHHCTTGG-GTTS
T ss_pred CeEEEEeCCHHHHHHHHHHhCCch-hcCC
Confidence 478999999999999999997666 3444
No 70
>PHA00733 hypothetical protein
Probab=29.71 E-value=39 Score=27.58 Aligned_cols=24 Identities=21% Similarity=0.491 Sum_probs=18.4
Q ss_pred cccccccCcccccCHHHHHHHhhh
Q psy10921 207 GTFNCDVCNRLFIGQHQYEQHMNS 230 (269)
Q Consensus 207 ~~~~Ce~C~~~~~ge~eW~~HlkS 230 (269)
..|.|+.|++.+.....+..|+..
T Consensus 72 kPy~C~~Cgk~Fss~s~L~~H~r~ 95 (128)
T PHA00733 72 SPYVCPLCLMPFSSSVSLKQHIRY 95 (128)
T ss_pred CCccCCCCCCcCCCHHHHHHHHhc
Confidence 457888888888888888777763
No 71
>PF03715 Noc2: Noc2p family; InterPro: IPR005343 This is a small family of mainly hypothetical proteins of unknown function.
Probab=29.69 E-value=65 Score=30.14 Aligned_cols=36 Identities=28% Similarity=0.338 Sum_probs=26.1
Q ss_pred HHHHHhhHHHHHHHHHHhhcccccccCCCCCCcCCccccccHHHHHHHH
Q psy10921 26 HTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYL 74 (269)
Q Consensus 26 d~Mi~~GLldEv~~l~~~~~~~~~~~~~~~d~~~gi~qaIGyKEf~~yL 74 (269)
..++..|+++|+..|+..|- .....+|||.|+.--.
T Consensus 191 t~~~~d~v~e~~~~LL~e~l-------------a~~s~sIaFPEl~~pi 226 (299)
T PF03715_consen 191 TRQFQDGVIEEVYELLLEYL-------------AIYSYSIAFPELALPI 226 (299)
T ss_pred cHHHHHHHHHHHHHHHHHHH-------------HHHhcCCcchhhHHHH
Confidence 45678899999999986543 1233589999988544
No 72
>PRK00625 shikimate kinase; Provisional
Probab=29.52 E-value=37 Score=28.94 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=18.7
Q ss_pred ceEEEEEeCChHHHHHHHHHH
Q psy10921 4 NLKFTVNHLNSEVLDKRLEGR 24 (269)
Q Consensus 4 ~~l~~wL~~~~~vL~~RLd~R 24 (269)
+.+++||+++.+++.+||..|
T Consensus 96 ~~~Vv~L~~~~e~l~~Rl~~R 116 (173)
T PRK00625 96 RGLLVLLSLPIATIYQRLQKR 116 (173)
T ss_pred CCEEEEEECCHHHHHHHHhcC
Confidence 457899999999999999987
No 73
>COG5067 DBF4 Protein kinase essential for the initiation of DNA replication [DNA replication, recombination, and repair / Cell division and chromosome partitioning]
Probab=28.28 E-value=23 Score=34.59 Aligned_cols=27 Identities=37% Similarity=0.575 Sum_probs=21.1
Q ss_pred cccccccCcccccCHHHHHHHhhhhHHHHH
Q psy10921 207 GTFNCDVCNRLFIGQHQYEQHMNSVKHRRM 236 (269)
Q Consensus 207 ~~~~Ce~C~~~~~ge~eW~~HlkSr~Hrk~ 236 (269)
++-+||-|-.. -...++|+.|.+||+-
T Consensus 421 k~GYCENCrek---y~~lE~Hi~s~~HrrF 447 (468)
T COG5067 421 KKGYCENCREK---YESLEQHIVSEKHRRF 447 (468)
T ss_pred ccchhHHHHHH---HHHHHHHhhhhhhhhh
Confidence 55799999632 2578999999999873
No 74
>PRK13974 thymidylate kinase; Provisional
Probab=28.21 E-value=79 Score=27.46 Aligned_cols=41 Identities=12% Similarity=-0.025 Sum_probs=26.6
Q ss_pred ceEEEEEeCChHHHHHHHHHHHHHHHH---hhHHHHHHHHHHhh
Q psy10921 4 NLKFTVNHLNSEVLDKRLEGRVHTMIQ---NGLIEELLQFHRQY 44 (269)
Q Consensus 4 ~~l~~wL~~~~~vL~~RLd~RVd~Mi~---~GLldEv~~l~~~~ 44 (269)
+-++|+|+++.+++.+|+..|.+.=++ ..+.+.+...|..|
T Consensus 135 pd~~i~ld~~~~~~~~R~~~R~dD~~e~~~~~y~~~v~~~y~~y 178 (212)
T PRK13974 135 PDLTFFLEISVEESIRRRKNRKPDRIEAEGIEFLERVAEGFALI 178 (212)
T ss_pred CCEEEEEeCCHHHHHHHHHhcccCchhhhhHHHHHHHHHHHHHH
Confidence 457899999999999999888543222 13444455444433
No 75
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=27.50 E-value=53 Score=19.37 Aligned_cols=20 Identities=25% Similarity=0.609 Sum_probs=15.5
Q ss_pred cccccCcccccCHHHHHHHhh
Q psy10921 209 FNCDVCNRLFIGQHQYEQHMN 229 (269)
Q Consensus 209 ~~Ce~C~~~~~ge~eW~~Hlk 229 (269)
..|.+|++.+ .+.+-..|+.
T Consensus 2 v~CPiC~~~v-~~~~in~HLD 21 (26)
T smart00734 2 VQCPVCFREV-PENLINSHLD 21 (26)
T ss_pred CcCCCCcCcc-cHHHHHHHHH
Confidence 3699999876 6677788876
No 76
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=26.50 E-value=32 Score=20.79 Aligned_cols=13 Identities=54% Similarity=0.989 Sum_probs=9.5
Q ss_pred cccccCcccccCH
Q psy10921 209 FNCDVCNRLFIGQ 221 (269)
Q Consensus 209 ~~Ce~C~~~~~ge 221 (269)
+.|++|++.+.|.
T Consensus 1 ~~C~~C~~~~~~~ 13 (30)
T PF03107_consen 1 FWCDVCRRKIDGF 13 (30)
T ss_pred CCCCCCCCCcCCC
Confidence 4688898777664
No 77
>KOG2505|consensus
Probab=26.38 E-value=62 Score=32.79 Aligned_cols=35 Identities=23% Similarity=0.327 Sum_probs=30.6
Q ss_pred ccccccCcccccCHHHHHHHhhhhHHHHHhHHHHH
Q psy10921 208 TFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKMER 242 (269)
Q Consensus 208 ~~~Ce~C~~~~~ge~eW~~HlkSr~Hrk~~kk~kk 242 (269)
...|.+|+..|-.-.+=..|.+|==||=++|++-+
T Consensus 66 ~~~CstCq~~F~s~~eqr~HyksD~HR~N~Krkl~ 100 (591)
T KOG2505|consen 66 SDQCSTCQIPFGSRQEQREHYKSDWHRFNTKRKLR 100 (591)
T ss_pred cccccccCCccccHHHHHHHHHHHHHHHHHHHHhc
Confidence 45799999999998899999999999998887654
No 78
>KOG0796|consensus
Probab=25.87 E-value=52 Score=31.24 Aligned_cols=36 Identities=17% Similarity=0.393 Sum_probs=24.8
Q ss_pred cccccccCcccc-cCH--HHHHHHhhhhHHHHHhHHHHH
Q psy10921 207 GTFNCDVCNRLF-IGQ--HQYEQHMNSVKHRRMKVKMER 242 (269)
Q Consensus 207 ~~~~Ce~C~~~~-~ge--~eW~~HlkSr~Hrk~~kk~kk 242 (269)
+-..||||+-.| +.+ .--..|+.||-|..-+.-..+
T Consensus 185 kl~VCeVCGa~L~~~D~d~RlaDHf~GKlHlGy~~iR~~ 223 (319)
T KOG0796|consen 185 KLRVCEVCGAFLSVNDADRRLADHFGGKLHLGYVLIREK 223 (319)
T ss_pred hhhHHHhhhHHHhccchHHHHHHhhcchHHHHHHHHHHH
Confidence 578999999543 333 346789999999875544333
No 79
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=25.32 E-value=49 Score=26.36 Aligned_cols=21 Identities=24% Similarity=0.044 Sum_probs=18.4
Q ss_pred ceEEEEEeCChHHHHHHHHHH
Q psy10921 4 NLKFTVNHLNSEVLDKRLEGR 24 (269)
Q Consensus 4 ~~l~~wL~~~~~vL~~RLd~R 24 (269)
+..++||+++.+++.+|+.+|
T Consensus 92 ~~~~i~l~~~~e~~~~R~~~r 112 (154)
T cd00464 92 NGIVVWLDASPEELLERLARD 112 (154)
T ss_pred CCeEEEEeCCHHHHHHHhccC
Confidence 457899999999999999877
No 80
>COG5200 LUC7 U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]
Probab=24.65 E-value=70 Score=28.89 Aligned_cols=43 Identities=14% Similarity=0.277 Sum_probs=30.8
Q ss_pred cccccccCccc---ccCHHHHHHHhhhhHHHHHhHHHHHHhhhhhhh
Q psy10921 207 GTFNCDVCNRL---FIGQHQYEQHMNSVKHRRMKVKMERQLQHILRN 250 (269)
Q Consensus 207 ~~~~Ce~C~~~---~~ge~eW~~HlkSr~Hrk~~kk~kk~~~~~~~~ 250 (269)
+...|++|+.. +-++.--..|+.||-|..-+.=+.+. .++|.+
T Consensus 184 klqvC~iCgayLsrlDtdrrladHf~GklHlGy~~~R~dl-~~llk~ 229 (258)
T COG5200 184 KLQVCGICGAYLSRLDTDRRLADHFNGKLHLGYLLVRSDL-ADLLKK 229 (258)
T ss_pred hhhhhhhhhhHHHhcchhhHHHHHhccchhhhHHHHHHHH-HHHHHH
Confidence 56789999943 45666788999999999876655444 344444
No 81
>PRK13975 thymidylate kinase; Provisional
Probab=23.87 E-value=86 Score=26.29 Aligned_cols=20 Identities=25% Similarity=0.147 Sum_probs=18.3
Q ss_pred EEEEEeCChHHHHHHHHHHH
Q psy10921 6 KFTVNHLNSEVLDKRLEGRV 25 (269)
Q Consensus 6 l~~wL~~~~~vL~~RLd~RV 25 (269)
++|||+++.+++.+|+..|-
T Consensus 116 ~vi~L~~~~e~~~~Rl~~r~ 135 (196)
T PRK13975 116 LVFLLDVDIEEALKRMETRD 135 (196)
T ss_pred EEEEEcCCHHHHHHHHhccC
Confidence 68999999999999999883
No 82
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=23.11 E-value=79 Score=21.54 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=12.2
Q ss_pred ccccCcccccCHHHHHHHhhhhHH
Q psy10921 210 NCDVCNRLFIGQHQYEQHMNSVKH 233 (269)
Q Consensus 210 ~Ce~C~~~~~ge~eW~~HlkSr~H 233 (269)
.|.+|++.|-.++. .++-..-+
T Consensus 22 ~CPlC~r~l~~e~~--~~li~~~~ 43 (54)
T PF04423_consen 22 CCPLCGRPLDEEHR--QELIKKYK 43 (54)
T ss_dssp E-TTT--EE-HHHH--HHHHHHHH
T ss_pred cCCCCCCCCCHHHH--HHHHHHHH
Confidence 89999999888775 55544433
No 83
>PRK03839 putative kinase; Provisional
Probab=22.77 E-value=1.8e+02 Score=24.08 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=17.1
Q ss_pred EEEEEeCChHHHHHHHHHH
Q psy10921 6 KFTVNHLNSEVLDKRLEGR 24 (269)
Q Consensus 6 l~~wL~~~~~vL~~RLd~R 24 (269)
.++||+++.+++.+||..|
T Consensus 82 ~vi~L~~~~~~~~~Rl~~R 100 (180)
T PRK03839 82 YVIVLRAHPKIIKERLKER 100 (180)
T ss_pred EEEEEECCHHHHHHHHHHc
Confidence 4689999999999999877
No 84
>PRK14527 adenylate kinase; Provisional
Probab=22.56 E-value=69 Score=27.12 Aligned_cols=20 Identities=20% Similarity=0.243 Sum_probs=18.2
Q ss_pred EEEEEeCChHHHHHHHHHHH
Q psy10921 6 KFTVNHLNSEVLDKRLEGRV 25 (269)
Q Consensus 6 l~~wL~~~~~vL~~RLd~RV 25 (269)
+++||+++.+++.+|+..|-
T Consensus 114 ~vi~l~~~~~~~~~Rl~~R~ 133 (191)
T PRK14527 114 AVVLLEVPDEELIRRIVERA 133 (191)
T ss_pred EEEEEECCHHHHHHHHHcCc
Confidence 57899999999999999994
No 85
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=22.00 E-value=82 Score=25.98 Aligned_cols=22 Identities=23% Similarity=0.093 Sum_probs=19.1
Q ss_pred ceEEEEEeCChHHHHHHHHHHH
Q psy10921 4 NLKFTVNHLNSEVLDKRLEGRV 25 (269)
Q Consensus 4 ~~l~~wL~~~~~vL~~RLd~RV 25 (269)
..++|||+++.+++.+|+.+|=
T Consensus 126 ~~~~i~l~~~~~~~~~R~~~R~ 147 (200)
T cd01672 126 PDLTILLDIDPEVGLARIEARG 147 (200)
T ss_pred CCEEEEEeCCHHHHHHHHHhcC
Confidence 3478999999999999999883
No 86
>PRK14531 adenylate kinase; Provisional
Probab=21.50 E-value=70 Score=26.96 Aligned_cols=19 Identities=32% Similarity=0.378 Sum_probs=17.6
Q ss_pred EEEEEeCChHHHHHHHHHH
Q psy10921 6 KFTVNHLNSEVLDKRLEGR 24 (269)
Q Consensus 6 l~~wL~~~~~vL~~RLd~R 24 (269)
++|||+|+.+++.+|+..|
T Consensus 110 ~vi~l~~~~~~l~~Rl~~R 128 (183)
T PRK14531 110 AVVLLELDDAVLIERLLAR 128 (183)
T ss_pred eEEEEECCHHHHHHHhhcC
Confidence 5899999999999999988
No 87
>PHA03136 thymidine kinase; Provisional
Probab=21.28 E-value=82 Score=30.71 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=33.0
Q ss_pred EEEEEeCChHHHHHHHHHHHHHH--HHhhHHHHHHHHHHhh
Q psy10921 6 KFTVNHLNSEVLDKRLEGRVHTM--IQNGLIEELLQFHRQY 44 (269)
Q Consensus 6 l~~wL~~~~~vL~~RLd~RVd~M--i~~GLldEv~~l~~~~ 44 (269)
++++++++.+++.+||.+|-..+ |+.+.|.++.+.|..+
T Consensus 194 ~IIyL~l~~e~~~~RI~kRgR~~E~I~~~YL~~L~~~Y~~~ 234 (378)
T PHA03136 194 NIVIMDLDECEHAERIIARGRPGEAIDVRFLCALHNIYICF 234 (378)
T ss_pred EEEEEeCCHHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHH
Confidence 57999999999999999998655 5568899998888763
No 88
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=20.87 E-value=85 Score=25.88 Aligned_cols=20 Identities=20% Similarity=0.111 Sum_probs=18.2
Q ss_pred eEEEEEeCChHHHHHHHHHH
Q psy10921 5 LKFTVNHLNSEVLDKRLEGR 24 (269)
Q Consensus 5 ~l~~wL~~~~~vL~~RLd~R 24 (269)
..+|||+++.+++.+|+..|
T Consensus 108 ~~vi~l~~~~~~~~~Rl~~R 127 (188)
T TIGR01360 108 TLVLYFDCSEDTMVKRLLKR 127 (188)
T ss_pred CEEEEEECCHHHHHHHHHcc
Confidence 47899999999999999888
Done!