RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10921
(269 letters)
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation,
ATP-binding, cytoplasm, mitochondrion,
nucleotide-binding, nucleus; 2.95A {Saccharomyces
cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Length = 409
Score = 125 bits (316), Expect = 1e-33
Identities = 53/246 (21%), Positives = 96/246 (39%), Gaps = 54/246 (21%)
Query: 15 EVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYL 74
E L +RL+ RV M++ G ++E+ Q + Y+++ K G++Q IGFKEF +L
Sbjct: 199 EPLFQRLDDRVDDMLERGALQEIKQLYEYYSQN---KFTPEQCENGVWQVIGFKEFLPWL 255
Query: 75 MLSDQDRQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYA 134
++D ++ + QYA
Sbjct: 256 ----------------------------------TGKTDDNTVKLEDCIERMKTRTRQYA 281
Query: 135 KKQNQWVRNRLLKCPDRMVPPVYSLNCTDLTTWAQSVTAPALHIVQSYLDNRA-PTGIEP 193
K+Q +W++ L+ +Y L+ TDL+ W + + A+ I ++ NR P
Sbjct: 282 KRQVKWIKKMLIPDIK---GDIYLLDATDLSQWDTNASQRAIAISNDFISNRPIKQERAP 338
Query: 194 LAQEYVDPSYYNAGT-------FNCDVC------NRLFIGQHQYEQHMNSVKHRRMKVKM 240
A E + + C+VC N + IG+ ++ H+ S +H+ +
Sbjct: 339 KALEELLSKGETTMKKLDDWTHYTCNVCRNADGKNVVAIGEKYWKIHLGSRRHKSNLKRN 398
Query: 241 ERQLQH 246
RQ
Sbjct: 399 TRQADF 404
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP;
2.37A {Humulus lupulus}
Length = 339
Score = 93.8 bits (233), Expect = 2e-22
Identities = 33/183 (18%), Positives = 62/183 (33%), Gaps = 44/183 (24%)
Query: 15 EVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYL 74
+VL L RV M++ G+ +EL +F+ +ED + G+ ++IG EF Y
Sbjct: 185 KVLTDYLAKRVDDMLELGMFDELAEFYSPEDED---HDEDSATRTGLRKAIGVPEFDRYF 241
Query: 75 MLSDQDRQEPDYTKGIFQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQYA 134
++F + + R F +++ A+ A
Sbjct: 242 ----------------------EKFRPGDVEGEDPGRDRVRRGAFEEAVRAIKENTCHLA 279
Query: 135 KKQNQWVRNRLLKCPDRMVPPVYSLNCTDLT--------------TWAQSVTAPALHIVQ 180
K+Q + + L+ T+ W + V P++ IV
Sbjct: 280 KRQIGKILRL-----KGAGWDLRRLDATESFRAAMTSDSGEKCTEIWEKQVLEPSVKIVS 334
Query: 181 SYL 183
+L
Sbjct: 335 RFL 337
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside
modification, isopentenyl-tRNA transferase,
transferase-RNA complex; 2.50A {Escherichia coli k-12}
PDB: 2zxu_A* 2zm5_A
Length = 316
Score = 42.5 bits (101), Expect = 7e-05
Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 5 LKFTVNHLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQS 64
+F + + E+L +R+E R H M+ +G E+ + + L D +
Sbjct: 198 HQFAIAPASRELLHQRIEQRFHQMLASGFEAEVRALFARGD-------LHTDLP--SIRC 248
Query: 65 IGFKEFHNYL 74
+G+++ +YL
Sbjct: 249 VGYRQMWSYL 258
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding,
nucleotide-binding, nucleotidyltransferase, tRNA
processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A
3crr_A
Length = 323
Score = 42.1 bits (100), Expect = 9e-05
Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 9/70 (12%)
Query: 5 LKFTVNHLNSEVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGIFQS 64
+ + +VL R+ R M++ G I E+ H + + L ++
Sbjct: 204 AQLAIAPEQRQVLHARIAQRFRQMLEQGFIAEVEALHARSD-------LHAGLP--SIRA 254
Query: 65 IGFKEFHNYL 74
+G+++ +YL
Sbjct: 255 VGYRQVWDYL 264
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2; 2.70A
{Staphylococcus epidermidis atcc 12228}
Length = 340
Score = 41.0 bits (97), Expect = 2e-04
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 15/62 (24%)
Query: 15 EVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGI--FQSIGFKEFHN 72
E L R+ RV M+ +GL E+ + L + Q+IG+KE
Sbjct: 208 ETLYLRINKRVDIMLGHGLFNEV-------------QHLVEQGFEASQSMQAIGYKELVP 254
Query: 73 YL 74
+
Sbjct: 255 VI 256
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.4 bits (96), Expect = 2e-04
Identities = 40/319 (12%), Positives = 92/319 (28%), Gaps = 113/319 (35%)
Query: 1 MELNLKFTVNHLNSEVLDKRLEG-----RVHTMIQNGLIEEL--LQFHRQYNEDRIGK-- 51
L LK+ L+ D E R ++I + + L + N D++
Sbjct: 304 KSLLLKY----LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 52 -----QLEPDYTKGIFQSIG-F---------------------------KEFHNYLMLSD 78
LEP + +F + F + H Y ++
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV-- 417
Query: 79 QDRQEPDYTKGI--------FQSIGFKEFHNYLMLSDSDRESDKGREIFNKSLDALV--- 127
++Q + T I + H ++ + ++ ++ LD
Sbjct: 418 -EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 128 ----LANVQYAKKQN---------QWVRNRLLKCPDRMVPPVYSLNC-TDLTTWAQSVTA 173
L N+++ ++ +++ ++ LN L +
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP---- 532
Query: 174 PALHIVQSYLDNRAPTGIEPLAQEYVDPSYYNAGTFNCDVCNRLFIGQHQYEQHMNSVKH 233
+I DN +P + V+ + + F+ + E+++ K+
Sbjct: 533 ---YIC----DN------DPKYERLVN-----------AILD--FL--PKIEENLICSKY 564
Query: 234 RRMKVKMERQLQHILRNQD 252
+ L+ L +D
Sbjct: 565 TDL-------LRIALMAED 576
Score = 41.0 bits (95), Expect = 3e-04
Identities = 41/300 (13%), Positives = 80/300 (26%), Gaps = 97/300 (32%)
Query: 36 ELLQFHRQY------NEDRIGKQLE----PDYTKGIFQSIGFKEFHNYLMLSDQDRQEPD 85
E + QY ED + D K I +E + +M D
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSK---EEIDHIIMSKDAVSG--- 63
Query: 86 YTKGIF------QSIGFKEF------HNYLMLSDSDRESDKGREIFNKSLDALVLANVQY 133
T +F Q ++F NY L + + + Y
Sbjct: 64 -TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS----------MMTRMY 112
Query: 134 AKKQNQWVRNRLLKCPDRMVP-PVYSLNC-TDLTTWAQSV----------------TAPA 175
++ R+RL V L L + T A
Sbjct: 113 IEQ-----RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167
Query: 176 LHIVQSY-LDNRAPTGI---------------EPLAQEYVDPSYYNAGTFNCDVCNRLFI 219
L + SY + + I E L + + + +R
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ--------IDPNWTSRSDH 219
Query: 220 GQHQYEQHMNSVKHRRMKVKMERQLQH---ILRN-QDPRDTKV--IGDKL----RDQATT 269
+ + ++S++ ++ + ++ +L N Q+ + + K+ R + T
Sbjct: 220 SSN-IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278
Score = 36.8 bits (84), Expect = 0.007
Identities = 35/258 (13%), Positives = 77/258 (29%), Gaps = 82/258 (31%)
Query: 25 VHTMIQNG---LIEELLQFHR--QYNEDRI-----GKQLEPDYTKGIFQSIGFKEFHNYL 74
+ ++ +G + ++ ++ + +I P+ + Q +
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL-------LY 207
Query: 75 MLSDQDRQEPDYTKGIFQSIG-FKEFHNYLMLSDSDRESDKGREIFNKSLDALVLANVQY 133
+ D++ I I + L+ S + + L LVL NVQ
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS----------KPYENCL--LVLLNVQ- 254
Query: 134 AKKQNQWVRNRLLKCPDRMVPPVYSLNCTDL-TTWAQSVTAPALHIVQSYLDNRAPTGIE 192
N N ++L+C L TT + VT D +
Sbjct: 255 ----NAKAWN------------AFNLSCKILLTTRFKQVT-----------DFLSAATTT 287
Query: 193 PLAQEYVDPSYYNAGTFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKME-RQLQHILRNQ 251
++ ++ + + L + K+ + + R++
Sbjct: 288 HISLDHHSMTLTPDEVKS------LLL------------KYLDCRPQDLPREVLTT---- 325
Query: 252 DPRDTKVIGDKLRDQATT 269
+PR +I + +RD T
Sbjct: 326 NPRRLSIIAESIRDGLAT 343
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2, protein structure
initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Length = 322
Score = 39.4 bits (93), Expect = 7e-04
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 15/62 (24%)
Query: 15 EVLDKRLEGRVHTMIQNGLIEELLQFHRQYNEDRIGKQLEPDYTKGI--FQSIGFKEFHN 72
+VL R+ RV M++ GLI+E K+L + Q+IG+KE ++
Sbjct: 202 DVLYDRINRRVDQMVEEGLIDEA-------------KKLYDRGIRDCQSVQAIGYKEMYD 248
Query: 73 YL 74
YL
Sbjct: 249 YL 250
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.004
Identities = 43/245 (17%), Positives = 69/245 (28%), Gaps = 103/245 (42%)
Query: 7 FTVNHLNSEVLDKRLE---------GRVHTMIQN--------GLIEELLQFHRQYNEDRI 49
++++L E + + +V + N G + L + R
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL---R- 394
Query: 50 GKQLEPDYTKGIFQS-IGFKE----FHN-YLMLSDQDRQEPDYTKGIFQSIGFKEFHNYL 103
K P G+ QS I F E F N +L ++ P FH++L
Sbjct: 395 -KAKAPS---GLDQSRIPFSERKLKFSNRFLPVA-----SP--------------FHSHL 431
Query: 104 MLSDSDRESDKGREIFNKSLDALVLANVQYAKKQNQWVRNRLLKCPDRMVPPVYSLNC-T 162
++ SD LV NV + K ++ P VY +
Sbjct: 432 LVPASD-----------LINKDLVKNNVSFNAKD--------IQIP------VYDTFDGS 466
Query: 163 DLTT-------------------WAQSVTAPALHIVQSYLDNRAPTGIEPLAQEYVDPSY 203
DL W + A HI+ +G+ L D
Sbjct: 467 DLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILD--FGPGGASGLGVLTHRNKD--- 521
Query: 204 YNAGT 208
GT
Sbjct: 522 ---GT 523
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 35.0 bits (80), Expect = 0.007
Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Query: 179 VQSYLDNRAPTGIEPLAQEYVDPSYYNAGTFNCDVCNRLFIGQHQYEQHMNSVKH-RRMK 237
+ L + +P DP G C C R FI + H S H +R+K
Sbjct: 21 IHRELRPQGSARPQPDPNAEFDPDLPGGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLK 80
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 34.9 bits (79), Expect = 0.008
Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 7/69 (10%)
Query: 175 ALHIVQSYLDNRAPTGIEPLAQEYVDPSYYNAGTFNCDVCNRLFIGQHQYEQHMNSVKHR 234
A++ + + + + D S C VCN F E H H
Sbjct: 66 AINQGEDSVPAKKFKAAPAEISDGEDRSKC------CPVCNMTFSSPVVAESHYIGKTHI 119
Query: 235 RMKVKMERQ 243
+ +++ Q
Sbjct: 120 K-NLRLREQ 127
Score = 33.0 bits (74), Expect = 0.029
Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 188 PTGIEPLAQEYVDPSYYNAGTFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKMERQLQHI 247
P G + + + S+ + T C VC+ + I + Q H S KH KV+ +
Sbjct: 13 PVGKDAVNSLIRENSHIFSDTQ-CKVCSAVLISESQKLAHYQSRKHAN-KVRRYMAINQG 70
Query: 248 LRNQDPRDTK 257
+ + K
Sbjct: 71 EDSVPAKKFK 80
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.19
Identities = 11/48 (22%), Positives = 14/48 (29%), Gaps = 26/48 (54%)
Query: 132 QYAKKQNQWVRNRL-LKCPDRMVPPVYSLNCTDLTTWAQSVTAPALHI 178
Q KK ++ L L D +APAL I
Sbjct: 20 QALKK----LQASLKLYADD---------------------SAPALAI 42
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 31.8 bits (71), Expect = 0.23
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 211 CDVCNRLFIGQHQYEQHMNSVKHRRMKVKMERQLQ 245
C C+R F +E H+ H++ + K +
Sbjct: 295 CPFCSRWFKTSSVFESHLVGKIHKKNESKRRNFVY 329
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase,
deubiquitinase, cell cycle, hydrolase; 1.55A
{Saccharomyces cerevisiae} PDB: 3c0r_A
Length = 212
Score = 31.1 bits (70), Expect = 0.29
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 203 YYNAGTFN--CDVCNRLFIGQHQYEQHMNSVKHRRM 236
+N C+ C F+G+ + +H S H
Sbjct: 173 SFNTHKAQIKCNTCQMTFVGEREVARHAESTGHVDF 208
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 29.0 bits (64), Expect = 0.66
Identities = 7/25 (28%), Positives = 7/25 (28%)
Query: 209 FNCDVCNRLFIGQHQYEQHMNSVKH 233
C C F HM KH
Sbjct: 81 LKCMYCGHSFESLQDLSVHMIKTKH 105
Score = 26.3 bits (57), Expect = 5.2
Identities = 8/39 (20%), Positives = 11/39 (28%)
Query: 209 FNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKMERQLQHI 247
F C C+ + + HMN H R
Sbjct: 20 FRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPK 58
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 26.6 bits (59), Expect = 0.92
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 208 TFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKM 240
++ C C R F HMN + R ++++
Sbjct: 6 SYTCSFCKREFRSAQALGGHMNVHRRDRARLRL 38
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Length = 75
Score = 25.8 bits (56), Expect = 5.5
Identities = 7/20 (35%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 209 FNCDVCNRLFIGQH-QYEQH 227
F CD C+ +F +H + H
Sbjct: 30 FVCDGCSGIFCLEHRSKDSH 49
>3bux_B E3 ubiquitin-protein ligase CBL; TKB, signal transduction,
proto-oncogene, complex, ATP-binding, glycoprotein,
kinase, membrane, nucleotide-binding; HET: PTR; 1.35A
{Homo sapiens} SCOP: a.39.1.7 a.48.1.1 d.93.1.1 PDB:
1yvh_A* 3bun_B* 3buo_B* 3bum_B* 3buw_B* 3ob1_B* 3ob2_B*
3plf_B* 2cbl_A* 1b47_A 3pfv_A*
Length = 329
Score = 27.0 bits (59), Expect = 6.5
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 141 VRNRLLKCPDRMVPPVYSLNCTDLTTWAQSVTAPALHIVQSYLDNRAPTGIEPLAQEYVD 200
V+ RL K + ++ L+CT L WA +I+Q+ N+ + L + +
Sbjct: 255 VKARLQKFIHKPGSYIFRLSCTRLGQWAIGYVTADGNILQTIPHNKPL--FQALIDGFRE 312
Query: 201 PSYY 204
Y
Sbjct: 313 GFYL 316
>3op0_A Signal transduction protein CBL-C; structural genomics, structural
genomics consortium, SGC, SI transduction protein,
SH3-binding protein; HET: PTR; 2.52A {Homo sapiens}
Length = 323
Score = 26.7 bits (58), Expect = 7.9
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 141 VRNRLLKCPDRMVPPVYSLNCTDLTTWAQSVTAPALHIVQSYLDNRAPTGIEPLAQEYVD 200
V+ RL C D+ ++ +CT L WA + I+Q+ N+ PL+Q ++
Sbjct: 240 VQERLQACRDKPGSYIFRPSCTRLGQWAIGYVSSDGSILQTIPANK------PLSQVLLE 293
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 26.3 bits (57), Expect = 8.7
Identities = 8/46 (17%), Positives = 20/46 (43%), Gaps = 11/46 (23%)
Query: 15 EVLDKRLEGR------VHTMIQNGLIEELLQFHRQYNEDRIGKQLE 54
E KRL+ + + ++L +++++ +E Q+E
Sbjct: 92 EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSE-----QVE 132
>1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide
exchange factor, signaling protein; 1.41A {Legionella
pneumophila} SCOP: a.118.3.1 d.129.9.1 PDB: 1xt0_B
Length = 356
Score = 26.6 bits (58), Expect = 8.8
Identities = 10/75 (13%), Positives = 24/75 (32%), Gaps = 4/75 (5%)
Query: 39 QFHRQYNEDRIGKQLEPDYTKGIFQSIGFKEFHNYLMLSDQDRQEPDYTKGIFQSIG-FK 97
R G + + + ++ I K F + + + T FK
Sbjct: 163 GLKRNLRGGNNGGDFDAKFLEELYSEIKAKPFE---LNFVKTSPGYELTSTTLNKDSTFK 219
Query: 98 EFHNYLMLSDSDRES 112
+ ++L +D + +
Sbjct: 220 KLDSFLHSTDVNINT 234
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase
inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP:
c.17.1.1 PDB: 3sip_B
Length = 272
Score = 26.6 bits (58), Expect = 9.6
Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 14/92 (15%)
Query: 40 FHRQYNEDRIGKQLEPDYTKGIFQSIGFK-EFHNYL----------MLSDQDRQEPDYTK 88
F + R G ++ D + +++GFK L ++ D + D
Sbjct: 43 FDIHSLKSRTGTNVDSDNLSKVLKTLGFKVTVFPNLKSEEINKFIQQTAEMDHSDADCLL 102
Query: 89 GIFQSIGFKEFHNYLMLSDSDRESDKGREIFN 120
+ G L D+ + D F
Sbjct: 103 VAVLTHGEL---GMLYAKDTHYKPDNLWYYFT 131
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.403
Gapped
Lambda K H
0.267 0.0472 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,013,116
Number of extensions: 228865
Number of successful extensions: 532
Number of sequences better than 10.0: 1
Number of HSP's gapped: 512
Number of HSP's successfully gapped: 35
Length of query: 269
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 177
Effective length of database: 4,133,061
Effective search space: 731551797
Effective search space used: 731551797
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.0 bits)