RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10921
         (269 letters)



>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 67

 Score = 40.5 bits (95), Expect = 1e-05
 Identities = 11/45 (24%), Positives = 17/45 (37%)

Query: 199 VDPSYYNAGTFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKMERQ 243
            DP     G   C  C R FI     + H  S  H++   ++  +
Sbjct: 6   FDPDLPGGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSVE 50


>d3buxb3 d.93.1.1 (B:264-351) Cbl {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 88

 Score = 31.4 bits (71), Expect = 0.022
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 6/60 (10%)

Query: 141 VRNRLLKCPDRMVPPVYSLNCTDLTTWAQSVTAPALHIVQSYLDNRAPTGIEPLAQEYVD 200
           V+ RL K   +    ++ L+CT L  WA        +I+Q+   N+      PL Q  +D
Sbjct: 14  VKARLQKFIHKPGSYIFRLSCTRLGQWAIGYVTADGNILQTIPHNK------PLFQALID 67


>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ)
           {African clawed frog (Xenopus laevis) [TaxId: 8355]}
          Length = 55

 Score = 28.0 bits (62), Expect = 0.20
 Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 7/48 (14%)

Query: 196 QEYVDPSYYNAGTFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKMERQ 243
            +  D S        C VCN  F      E H     H +  +++  Q
Sbjct: 15  SDGEDRSKC------CPVCNMTFSSPVVAESHYIGKTHIK-NLRLREQ 55


>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress
           (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 37

 Score = 26.6 bits (59), Expect = 0.44
 Identities = 8/33 (24%), Positives = 15/33 (45%)

Query: 208 TFNCDVCNRLFIGQHQYEQHMNSVKHRRMKVKM 240
           ++ C  C R F        HMN  +  R ++++
Sbjct: 5   SYTCSFCKREFRSAQALGGHMNVHRRDRARLRL 37


>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 28

 Score = 24.4 bits (53), Expect = 2.2
 Identities = 7/20 (35%), Positives = 11/20 (55%)

Query: 209 FNCDVCNRLFIGQHQYEQHM 228
           F CD+C R F    + ++H 
Sbjct: 4   FACDICGRKFARSDERKRHT 23


>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 61

 Score = 24.7 bits (54), Expect = 3.1
 Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 2/31 (6%)

Query: 209 FNCDVCNRLFI--GQHQYEQHMNSVKHRRMK 237
           F CD C+           + H +  KH+   
Sbjct: 4   FYCDYCDTYLTHDSPSVRKTHCSGRKHKENV 34


>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing
           protein At1g12440 {Thale cress (Arabidopsis thaliana)
           [TaxId: 3702]}
          Length = 74

 Score = 24.9 bits (54), Expect = 3.7
 Identities = 8/21 (38%), Positives = 9/21 (42%), Gaps = 1/21 (4%)

Query: 208 TFNCDVCNRLFIGQHQY-EQH 227
           T     C   F G H+Y E H
Sbjct: 38  TGFKCRCGSTFCGTHRYPESH 58


>d1wfea_ g.80.1.1 (A:) AN1-type zinc finger protein 1 {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 86

 Score = 24.6 bits (53), Expect = 5.8
 Identities = 5/20 (25%), Positives = 7/20 (35%), Gaps = 1/20 (5%)

Query: 209 FNCDVCNRLFIGQH-QYEQH 227
             C  C + F  +H     H
Sbjct: 41  VICPYCEKNFCLRHRHQSDH 60


>d1u5sb2 g.39.1.3 (B:103-137) Pinch (particularly interesting new
           Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
          Length = 35

 Score = 23.3 bits (50), Expect = 6.7
 Identities = 7/19 (36%), Positives = 10/19 (52%)

Query: 209 FNCDVCNRLFIGQHQYEQH 227
           F C  C + F+G   YE+ 
Sbjct: 1   FVCAKCEKPFLGHRHYERK 19


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.403 

Gapped
Lambda     K      H
   0.267   0.0600    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 985,602
Number of extensions: 45085
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 14
Length of query: 269
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 185
Effective length of database: 1,254,276
Effective search space: 232041060
Effective search space used: 232041060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.1 bits)