BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10922
         (362 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q80UN9|MOD5_MOUSE tRNA dimethylallyltransferase, mitochondrial OS=Mus musculus
           GN=Trit1 PE=2 SV=2
          Length = 467

 Score = 37.0 bits (84), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 33/50 (66%)

Query: 149 SRALQVFYEHGRSIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQCDKEV 198
           +R+LQVF E G S  + L  Q + EGG  LGGPLRFPN  ILWL  D+ V
Sbjct: 186 ARSLQVFEETGISHSEFLHRQHAEEGGGPLGGPLRFPNPCILWLHADQAV 235



 Score = 33.5 bits (75), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 30/46 (65%)

Query: 33  ALQVFYEHGRSIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQCDK 78
           +LQVF E G S  + L  Q + EGG  LGGPLRFPN  ILWL  D+
Sbjct: 188 SLQVFEETGISHSEFLHRQHAEEGGGPLGGPLRFPNPCILWLHADQ 233


>sp|Q9SH22|DRL20_ARATH Probable disease resistance protein At1g63360 OS=Arabidopsis
           thaliana GN=At1g63360 PE=2 SV=1
          Length = 884

 Score = 35.4 bits (80), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 9/87 (10%)

Query: 130 VTNCSGRVRSLTISTFLVSSRALQVFYEHGRSIHDILTEQKSLEGGSLLGGPLRFPNTVI 189
           + NC G +R LT   F    R+L V+  H + + DI+ E+K+ EG     G L FP    
Sbjct: 746 IFNCEG-LRELTFLIFAPKIRSLSVW--HAKDLEDIINEEKACEGEE--SGILPFPELNF 800

Query: 190 LWL----QCDKEVPAPLNFHQISDIRI 212
           L L    +  K    PL F  + +I I
Sbjct: 801 LTLHDLPKLKKIYWRPLPFLCLEEINI 827


>sp|Q86AV9|PLDG_DICDI Phosphatidylinositol-glycan-specific phospholipase D
           OS=Dictyostelium discoideum GN=pldG PE=3 SV=1
          Length = 948

 Score = 32.3 bits (72), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 7/87 (8%)

Query: 205 HQISDIR---ILQVMSSMLTGIAGTFFSGTFELSPDIRHTFGTFGSQFGARHTYTVISRD 261
           HQI+DI    I  +   ++  +AG  F+GT+EL+    H     G +F   + Y +    
Sbjct: 121 HQIADISWHSIGGIQQGLIRAMAGQDFNGTYELA----HGNADEGGEFELAYNYDLSWLS 176

Query: 262 AAFYVGIRQTNNIQPTHRSVRMIYANL 288
             +YV I    NI  +    R+   NL
Sbjct: 177 DKWYVPITDIKNIFHSMNYPRVDDENL 203


>sp|Q9H3H1|MOD5_HUMAN tRNA dimethylallyltransferase, mitochondrial OS=Homo sapiens
           GN=TRIT1 PE=1 SV=1
          Length = 467

 Score = 32.3 bits (72), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 26/50 (52%), Positives = 32/50 (64%)

Query: 149 SRALQVFYEHGRSIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQCDKEV 198
           +R+LQVF E G S  + L  Q + EGG  LGGPL+F N  ILWL  D+ V
Sbjct: 186 ARSLQVFEETGISHSEFLHRQHTEEGGGPLGGPLKFSNPCILWLHADQAV 235


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.137    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132,683,409
Number of Sequences: 539616
Number of extensions: 5295307
Number of successful extensions: 9964
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 9960
Number of HSP's gapped (non-prelim): 7
length of query: 362
length of database: 191,569,459
effective HSP length: 119
effective length of query: 243
effective length of database: 127,355,155
effective search space: 30947302665
effective search space used: 30947302665
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)