Query psy10922
Match_columns 362
No_of_seqs 249 out of 969
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 21:56:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10922.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10922hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14729 miaA tRNA delta(2)-is 100.0 3.1E-43 6.7E-48 341.8 10.2 220 25-316 28-277 (300)
2 PLN02748 tRNA dimethylallyltra 100.0 1.1E-42 2.5E-47 354.8 6.2 263 26-350 48-397 (468)
3 COG0324 MiaA tRNA delta(2)-iso 100.0 8.5E-42 1.8E-46 332.4 9.0 223 24-321 27-281 (308)
4 PF01715 IPPT: IPP transferase 100.0 2.8E-42 6.2E-47 327.2 3.2 210 34-314 1-240 (253)
5 TIGR00174 miaA tRNA isopenteny 100.0 1.6E-40 3.5E-45 321.0 7.9 221 25-316 24-274 (287)
6 PLN02840 tRNA dimethylallyltra 100.0 6E-38 1.3E-42 316.4 7.9 234 26-315 47-333 (421)
7 PRK00091 miaA tRNA delta(2)-is 100.0 1.4E-37 3.1E-42 302.8 8.0 219 25-315 29-277 (307)
8 PLN02165 adenylate isopentenyl 100.0 1E-29 2.2E-34 250.3 1.3 167 26-283 69-239 (334)
9 KOG1384|consensus 99.9 8.4E-27 1.8E-31 228.1 1.3 206 24-321 31-242 (348)
10 PLN02748 tRNA dimethylallyltra 99.2 1.5E-12 3.2E-17 134.2 -4.0 173 27-234 189-401 (468)
11 PF01715 IPPT: IPP transferase 98.6 5.2E-09 1.1E-13 100.0 -0.1 91 27-151 122-215 (253)
12 TIGR00174 miaA tRNA isopenteny 98.4 3.7E-08 8E-13 96.2 0.2 90 27-150 154-246 (287)
13 PRK00091 miaA tRNA delta(2)-is 98.4 7.8E-08 1.7E-12 94.6 -0.1 89 27-150 159-250 (307)
14 PRK14729 miaA tRNA delta(2)-is 98.3 1E-07 2.2E-12 93.6 -0.4 87 27-149 158-247 (300)
15 COG0324 MiaA tRNA delta(2)-iso 98.3 5.5E-07 1.2E-11 88.9 3.4 108 27-167 158-271 (308)
16 PLN02840 tRNA dimethylallyltra 98.1 1E-06 2.2E-11 90.3 0.9 101 27-152 180-299 (421)
17 PLN02165 adenylate isopentenyl 97.7 1.3E-06 2.9E-11 87.1 -5.6 63 64-151 172-239 (334)
18 PF01745 IPT: Isopentenyl tran 95.5 0.007 1.5E-07 57.9 1.9 30 24-53 25-54 (233)
19 KOG1384|consensus 95.2 0.0055 1.2E-07 61.6 -0.0 35 63-113 134-171 (348)
20 PF09862 DUF2089: Protein of u 55.5 11 0.00024 32.7 2.8 32 268-299 73-113 (113)
21 smart00459 Sorb Sorbin homolog 37.1 21 0.00045 26.9 1.4 20 340-359 24-43 (50)
22 COG3877 Uncharacterized protei 35.2 54 0.0012 28.6 3.8 28 270-300 95-122 (122)
23 PF02208 Sorb: Sorbin homologo 20.8 58 0.0013 24.2 1.3 17 340-356 21-37 (47)
No 1
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=100.00 E-value=3.1e-43 Score=341.77 Aligned_cols=220 Identities=18% Similarity=0.185 Sum_probs=180.9
Q ss_pred ccchhHHHHHHHHHHhCCCcchhhhhhhhhcCCCCCCCCCCCCceEEEEEecCCCccccccccccccccccccc--cchh
Q psy10922 25 LARCISSPALQVFYEHGRSIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQCDKDKMRPWRESNMWPSAYKTDA--LPTK 102 (362)
Q Consensus 25 ~~~i~s~RSLQIYr~tGigtSki~~eQ~~~~~~~~~~~~lR~ph~LI~WL~~drdvLdpRlVdsMv~~~~~~~a--~~~~ 102 (362)
..||||+||||||++|+|||+||+.+++. .+||||+ |+++|.+.+++. +|+++| ++.+
T Consensus 28 ~~eIIsaDS~QvYr~ldIgTaKpt~eE~~-----------~i~Hhli-------d~~~p~e~~sv~--~f~~~a~~~i~~ 87 (300)
T PRK14729 28 KAEIINVDSIQVYKEFDIASCKPSKELRK-----------HIKHHLV-------DFLEPIKEYNLG--IFYKEALKIIKE 87 (300)
T ss_pred CCcEEeccHHHHHCCCceecCCCCHHHHc-----------CCCeeee-------eccCCCCceeHH--HHHHHHHHHHHH
Confidence 35999999999999999999999998875 2899999 599999999996 999998 5999
Q ss_pred HHhhCCcEEEEecCCCC------------CCCHHHHHhhhhh----------------ccchhhhccccchhhhhHHHHH
Q psy10922 103 ITRLNGLLIYIGSSGTF------------ELSPDIRHTYVTN----------------CSGRVRSLTISTFLVSSRALQV 154 (362)
Q Consensus 103 i~~rgGLpiEVGGTGLY------------evd~~iR~~ll~~----------------~~g~lQaIg~nD~~RiiRALeV 154 (362)
|.++|++|++||||||| +.++.+|..+.+. ++...+.||+||.+|++|||||
T Consensus 88 i~~~gk~PilvGGTglYi~all~gl~~~p~~~~~~r~~~~~~~~~~g~~~l~~~L~~~DP~~A~~i~pnd~~Ri~RALEv 167 (300)
T PRK14729 88 LRQQKKIPIFVGGSAFYFKHLKYGLPSTPPVSSKIRIYVNNLFTLKGKSYLLEELKRVDFIRYESINKNDIYRIKRSLEV 167 (300)
T ss_pred HHHCCCCEEEEeCchHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHhcCHHHHhhCCcCCHHHHHHHHHH
Confidence 99999999999999999 2566777654211 2344568999999999999999
Q ss_pred HHhhCCChhhhhHHhhhhcCCCCCCCCCCCccceEEEEeCCCCCCCCCCCCCchHHHHHHHHHHHHhcccCCCccCCccc
Q psy10922 155 FYEHGRSIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQCDKEVPAPLNFHQISDIRILQVMSSMLTGIAGTFFSGTFEL 234 (362)
Q Consensus 155 ~~~tG~~~S~~l~~qk~~~~~~~~~~~~ry~~~~iiwL~~dre~L~~l~~~~~~~~RI~~Rvd~Mle~~~G~~~~~~~~l 234 (362)
|+.||+++|+|.+.+. + .| +++++||.+||++| |+||++||++|+++ | |
T Consensus 168 ~~~tG~~~s~~~~~~~----------~-~~-~~~~i~l~~~r~~L---------~~rI~~Rv~~Ml~~--G--------l 216 (300)
T PRK14729 168 YYQTGIPISQFLKKQN----------M-FK-NILAIGLKRPMEEM---------KSRIISRVNNMIDC--G--------L 216 (300)
T ss_pred HHHhCCChHhhhhccC----------C-CC-CeEEEEeCCCHHHH---------HHHHHHHHHHHHHC--C--------H
Confidence 9999999999753221 1 24 67889999999999 99999999999999 9 9
Q ss_pred hhhHHhhHhhhhhhhccCccccccccccccccCcceeechHHHHHHHHHHhhCccChHHHHHHHHhhhcCCCCccccccc
Q psy10922 235 SPDIRHTFGTFGSQFGARHTYTVISRDAAFYVGIRQTNNIQPTHRSVRMIYANLCCVHTSSTAVNRCRLKPSTLPRQHRF 314 (362)
Q Consensus 235 ~~Ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~qaIGykE~~~yl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 314 (362)
++||+ .|.+... +...++||||||||+.+||. .|+.+++++++++++.- ..+++||..|
T Consensus 217 ieEv~----~l~~~~~------------~~~~~~~~aIGYkE~~~yl~---~g~~~l~e~~e~i~~~T--r~yAKRQ~TW 275 (300)
T PRK14729 217 LSEIK----SLLGKGY------------NENTPAFKGIGYREFLLWKS---RPCYMLNDIINLIVKNS--FLYVKRQMTF 275 (300)
T ss_pred HHHHH----HHHhcCC------------CCCCCcceeEcHHHHHHHHh---cCCCCHHHHHHHHHHHH--HHHHHHHHHH
Confidence 99999 5654321 11468999999999999994 48889999999988732 2466666555
Q ss_pred cc
Q psy10922 315 TS 316 (362)
Q Consensus 315 ~~ 316 (362)
.+
T Consensus 276 fr 277 (300)
T PRK14729 276 FA 277 (300)
T ss_pred cC
Confidence 53
No 2
>PLN02748 tRNA dimethylallyltransferase
Probab=100.00 E-value=1.1e-42 Score=354.80 Aligned_cols=263 Identities=15% Similarity=0.204 Sum_probs=199.2
Q ss_pred cchhHHHHHHHHHHhCCCcchhhhhhhhhcCCCCCCCCCCCCceEEEEEecCCCccccccccccccccccccc--cchhH
Q psy10922 26 ARCISSPALQVFYEHGRSIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQCDKDKMRPWRESNMWPSAYKTDA--LPTKI 103 (362)
Q Consensus 26 ~~i~s~RSLQIYr~tGigtSki~~eQ~~~~~~~~~~~~lR~ph~LI~WL~~drdvLdpRlVdsMv~~~~~~~a--~~~~i 103 (362)
++||++||||||++|+|+|+|++.+++. + +||||+ |+++|...+++. +|..+| +|.+|
T Consensus 48 ~eii~~DsmQVYrgLdIgTaKpt~eE~~--~---------VpHHLi-------d~v~p~e~ysv~--~F~~~A~~~I~~I 107 (468)
T PLN02748 48 VEIINADSMQVYSGLDVLTNKVPLHEQK--G---------VPHHLL-------GVISPSVEFTAK--DFRDHAVPLIEEI 107 (468)
T ss_pred eeEEcCchheeeCCcchhcCCCCHHHHc--C---------CCCeeE-------eecCCCCcCcHH--HHHHHHHHHHHHH
Confidence 6899999999999999999999998875 2 899999 499999999996 999998 59999
Q ss_pred HhhCCcEEEEecCCCCC--------C--------------CHHHHHhhh------------------hhccchhhhcccc
Q psy10922 104 TRLNGLLIYIGSSGTFE--------L--------------SPDIRHTYV------------------TNCSGRVRSLTIS 143 (362)
Q Consensus 104 ~~rgGLpiEVGGTGLYe--------v--------------d~~iR~~ll------------------~~~~g~lQaIg~n 143 (362)
.++|++|++|||||+|. . ++.+++.+. .-.+...+.||+|
T Consensus 108 ~~rgk~PIlVGGTglYi~aLl~g~~~~~~p~~~~~~~~~~~~~~r~~l~~~~~~~~~g~~~l~~~L~~vDP~~A~rihpn 187 (468)
T PLN02748 108 LSRNGLPVIVGGTNYYIQALVSPFLLDDMAEETEDCTFVVASVLDEHMDVESGLGNDDEDHGYELLKELDPVAANRIHPN 187 (468)
T ss_pred HhcCCCeEEEcChHHHHHHHHcCcccccCCccccccccccCHHHHHHHHHHHHHHhcCHHHHHHHHHhhCHHHHhhcCCc
Confidence 99999999999999991 1 133444331 1133455799999
Q ss_pred chhhhhHHHHHHHhhCCChhhhhHHhhhhcCCCCCCCCCCCccceEEEEeCCCCCCCCCCCCCchHHHHHHHHHHHHhcc
Q psy10922 144 TFLVSSRALQVFYEHGRSIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQCDKEVPAPLNFHQISDIRILQVMSSMLTGI 223 (362)
Q Consensus 144 D~~RiiRALeV~~~tG~~~S~~l~~qk~~~~~~~~~~~~ry~~~~iiwL~~dre~L~~l~~~~~~~~RI~~Rvd~Mle~~ 223 (362)
|.+|++||||||+.||+++|+|+++++..... .....+| ++++|||++++++| |+||++|||+|+++
T Consensus 188 D~rRI~RALEI~~~TG~~~S~~~~~~~~~~~~--~~~~~~~-~~~~i~l~~~r~~L---------~~RI~~Rvd~Mle~- 254 (468)
T PLN02748 188 NHRKINRYLELYATTGVLPSKLYQGKAAENWG--RISNSRF-DCCFICVDADTAVL---------DRYVNQRVDCMIDA- 254 (468)
T ss_pred cHHHHHHHHHHHHHHCcCHHHHhhhccccccc--cccCCCC-ceEEEEeCCCHHHH---------HHHHHHHHHHHHHC-
Confidence 99999999999999999999988765421110 0123567 78899999999999 99999999999999
Q ss_pred cCCCccCCccchhhHHhhHhhhhhhhccCccccccccccccccCcceeechHHHHHHHHHHhh----CccC---------
Q psy10922 224 AGTFFSGTFELSPDIRHTFGTFGSQFGARHTYTVISRDAAFYVGIRQTNNIQPTHRSVRMIYA----NLCC--------- 290 (362)
Q Consensus 224 ~G~~~~~~~~l~~Ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~qaIGykE~~~yl~~~~~----~~~~--------- 290 (362)
| |++||+ .|++.+. +++.|+|||||||||.+||+.... |+++
T Consensus 255 -G--------lleEv~----~l~~~~~------------~~~~~~~qaIGykE~~~yL~~~~~~~~~g~~~~~~~~~~~~ 309 (468)
T PLN02748 255 -G--------LLDEVY----DIYDPGA------------DYTRGLRQAIGVREFEDFLRLYLSRNENGELTSSSNNDKVM 309 (468)
T ss_pred -C--------HHHHHH----HHHhcCC------------CCCcccceeEcHHHHHHHHHhcccccccccccccccccchh
Confidence 9 999999 5554321 235689999999999999985432 2320
Q ss_pred ------------hHHHHHHHHhhhcCCCCcccc--ccccccccCC-----------ccccc------ccc-ceecccccc
Q psy10922 291 ------------VHTSSTAVNRCRLKPSTLPRQ--HRFTSSIDGR-----------RTSDL------ALT-RQVCKPTRL 338 (362)
Q Consensus 291 ------------~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~-----------~~~~~------~~~-~~~~~~~~~ 338 (362)
.++....++.|.++.++.||| +||..|+... +.+|+ ..| ..|-.|
T Consensus 310 ~~~~~~~~~~~~~~~~~~~l~eaie~ik~~Tr~yAKRQ~tw~~rl~~~~~~~i~~lD~t~~~~~~~~~~W~~~V~~p--- 386 (468)
T PLN02748 310 KENSRKILNFPHDDKLKILLDEAIDQVKLNTRRLVRRQKRRLHRLNTVFGWNIHYIDATEAILCKSEESWNAKVVKP--- 386 (468)
T ss_pred hhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCeeEeechhhhhhccHhHHHHHhHHH---
Confidence 111113456666666666666 4555555421 45555 556 788888
Q ss_pred chhhhhhHHHHH
Q psy10922 339 AIIKISHRLYKE 350 (362)
Q Consensus 339 ~~~~~~~~~~~~ 350 (362)
..+|...|+.+
T Consensus 387 -a~~iv~~fL~~ 397 (468)
T PLN02748 387 -AVEIVRRFLSD 397 (468)
T ss_pred -HHHHHHHHHcC
Confidence 88999988875
No 3
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.5e-42 Score=332.44 Aligned_cols=223 Identities=19% Similarity=0.228 Sum_probs=184.0
Q ss_pred cccchhHHHHHHHHHHhCCCcchhhhhhhhhcCCCCCCCCCCCCceEEEEEecCCCccccccccccccccccccc--cch
Q psy10922 24 RLARCISSPALQVFYEHGRSIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQCDKDKMRPWRESNMWPSAYKTDA--LPT 101 (362)
Q Consensus 24 ~~~~i~s~RSLQIYr~tGigtSki~~eQ~~~~~~~~~~~~lR~ph~LI~WL~~drdvLdpRlVdsMv~~~~~~~a--~~~ 101 (362)
--+||||+||||||++|+|||+||+.+++. + +||||+ |+++|.+.+++. +|+++| .+.
T Consensus 27 ~~~eIIs~DSmQvYr~mdIGTAKps~~e~~--~---------vpHhli-------Di~~p~e~ysa~--~f~~~a~~~i~ 86 (308)
T COG0324 27 LGGEIISLDSMQVYRGLDIGTAKPSLEELA--G---------VPHHLI-------DIRDPTESYSAA--EFQRDALAAID 86 (308)
T ss_pred cCCcEEecchhhhcCCCcccCCCCCHHHHc--C---------CCEEEe-------cccCccccccHH--HHHHHHHHHHH
Confidence 346999999999999999999999998885 2 799999 599999999997 999998 599
Q ss_pred hHHhhCCcEEEEecCCCC------------CCCHHHHHhhh----------------hhccchhhhccccchhhhhHHHH
Q psy10922 102 KITRLNGLLIYIGSSGTF------------ELSPDIRHTYV----------------TNCSGRVRSLTISTFLVSSRALQ 153 (362)
Q Consensus 102 ~i~~rgGLpiEVGGTGLY------------evd~~iR~~ll----------------~~~~g~lQaIg~nD~~RiiRALe 153 (362)
+|+++|++|++||||||| +.++.++.++. ...+...+.||+||.+|++||||
T Consensus 87 ~i~~rgk~pIlVGGTglY~~aL~~g~~~~p~~~~~~r~~~~~~~~~~g~~~L~~~L~~~Dp~~a~~i~pnD~~Ri~RALE 166 (308)
T COG0324 87 DILARGKLPILVGGTGLYLKALLEGLSLLPEADPEVRRRLEAELAELGNDALHAELKKIDPEAAAKIHPNDPQRIIRALE 166 (308)
T ss_pred HHHhCCCCcEEEccHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHhhCHHHHHhcCCCchhHHHHHHH
Confidence 999999999999999999 35666666431 11345557999999999999999
Q ss_pred HHHhhCCChhhhhHHhhhhcCCCCCCCCCCCccceEEEEeCCCCCCCCCCCCCchHHHHHHHHHHHHhcccCCCccCCcc
Q psy10922 154 VFYEHGRSIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQCDKEVPAPLNFHQISDIRILQVMSSMLTGIAGTFFSGTFE 233 (362)
Q Consensus 154 V~~~tG~~~S~~l~~qk~~~~~~~~~~~~ry~~~~iiwL~~dre~L~~l~~~~~~~~RI~~Rvd~Mle~~~G~~~~~~~~ 233 (362)
||+.||+|+|+++.++.. ....| +.+++||.++|++| ++||++|||+|++. |
T Consensus 167 v~~~tGk~~s~~~~~~~~--------~~~~~-~~~~~~l~~~r~~L---------~~rI~~R~d~Ml~~--G-------- 218 (308)
T COG0324 167 VYYLTGKPISELQKRSRP--------ILEPY-DILIIALAADREVL---------YERINRRVDAMLEQ--G-------- 218 (308)
T ss_pred HHHHHCCCHHHHhhcccC--------CCCCc-ceEEEEEeCCHHHH---------HHHHHHHHHHHHHc--c--------
Confidence 999999999998654311 12256 78999999999999 99999999999999 9
Q ss_pred chhhHHhhHhhhhhhhccCccccccccccccccCcceeechHHHHHHHHHHhhCccChHHHHHHHHhhhcCCCCcccc--
Q psy10922 234 LSPDIRHTFGTFGSQFGARHTYTVISRDAAFYVGIRQTNNIQPTHRSVRMIYANLCCVHTSSTAVNRCRLKPSTLPRQ-- 311 (362)
Q Consensus 234 l~~Ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~qaIGykE~~~yl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-- 311 (362)
|++||+ .|+++.. +. ..++||+|||+|+.+||+ |..+.+++++.++. .|||
T Consensus 219 li~EV~----~L~~~g~--~~----------~~~~~~~iGy~e~~~yl~----g~~~~~ea~~~~~~-------~TRqyA 271 (308)
T COG0324 219 LIEEVK----ALYARGL--HL----------DLPAMQAIGYKEILAYLD----GGISLEEAIERIKT-------ATRQYA 271 (308)
T ss_pred HHHHHH----HHHhccC--Cc----------cchHHHhcCHHHHHHHHh----CCCCHHHHHHHHHH-------HHHHHH
Confidence 999999 6776531 11 468999999999999997 77999998888765 3455
Q ss_pred ccccccccCC
Q psy10922 312 HRFTSSIDGR 321 (362)
Q Consensus 312 ~~~~~~~~~~ 321 (362)
.||..|.++.
T Consensus 272 KRQ~TWfr~~ 281 (308)
T COG0324 272 KRQLTWFRNQ 281 (308)
T ss_pred HHHHHHhccC
Confidence 4455555544
No 4
>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....
Probab=100.00 E-value=2.8e-42 Score=327.20 Aligned_cols=210 Identities=19% Similarity=0.244 Sum_probs=158.7
Q ss_pred HHHHHHhCCCcchhhhhhhhhcCCCCCCCCCCCCceEEEEEecCCCccccccccccccccccccc--cchhHHhhCCcEE
Q psy10922 34 LQVFYEHGRSIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQCDKDKMRPWRESNMWPSAYKTDA--LPTKITRLNGLLI 111 (362)
Q Consensus 34 LQIYr~tGigtSki~~eQ~~~~~~~~~~~~lR~ph~LI~WL~~drdvLdpRlVdsMv~~~~~~~a--~~~~i~~rgGLpi 111 (362)
||||++|+|||+|++++++. + +||||+ |+++|.+.+++. +|+++| ++.+|.++|++|+
T Consensus 1 mQvYr~ldIgTaKps~~e~~--~---------vpHhli-------d~~~p~e~ysv~--~f~~~a~~~i~~i~~rgk~PI 60 (253)
T PF01715_consen 1 MQVYRGLDIGTAKPSPEERA--G---------VPHHLI-------DILDPDEEYSVG--DFQRDAREAIEDILARGKIPI 60 (253)
T ss_dssp STTBTT-CTTTT---HHHHT--T---------S-EESS-------S-B-TTS---HH--HHHHHHHHHHHHHHHTT-EEE
T ss_pred CCccCCCceeeCCCCHHHHc--C---------CCEeee-------eeecccCCCCHH--HHHHHHHHHHHHHHhcCCeEE
Confidence 69999999999999998875 2 899999 699999999996 999998 5999999999999
Q ss_pred EEecCCCC------------CCCHHHHHhhhhh----------------ccchhhhccccchhhhhHHHHHHHhhCCChh
Q psy10922 112 YIGSSGTF------------ELSPDIRHTYVTN----------------CSGRVRSLTISTFLVSSRALQVFYEHGRSIH 163 (362)
Q Consensus 112 EVGGTGLY------------evd~~iR~~ll~~----------------~~g~lQaIg~nD~~RiiRALeV~~~tG~~~S 163 (362)
+||||||| +.|+++|..+.+. .+..++.||+||.+|++|||||+..||+++|
T Consensus 61 lvGGTglYi~all~g~~~~p~~~~~~r~~~~~~~~~~~~~~l~~~L~~~DP~~A~~i~~nd~~Ri~RALei~~~tG~~~s 140 (253)
T PF01715_consen 61 LVGGTGLYIQALLNGLADIPEVDPELRAELRAELEEEGNEELYEELKEVDPEAAAKIHPNDRRRIIRALEIYELTGKPPS 140 (253)
T ss_dssp EEES-HHHHHHHHCTS--TSSSHHHHHHHHHHHHHHSCHHHHHHHHHHC-HHHHCTS-TT-HHHHHHHHHHHHHHSS-HH
T ss_pred EECChHHHHHHHHhChhhhccccHHHHHHHHHHHHhccHHHHHHHHHhhCcHhhhcCCCCcHHHHHHHHHHHHhcCCChh
Confidence 99999999 2566776554211 2244468999999999999999999999999
Q ss_pred hhhHHhhhhcCCCCCCCCCCCccceEEEEeCCCCCCCCCCCCCchHHHHHHHHHHHHhcccCCCccCCccchhhHHhhHh
Q psy10922 164 DILTEQKSLEGGSLLGGPLRFPNTVILWLQCDKEVPAPLNFHQISDIRILQVMSSMLTGIAGTFFSGTFELSPDIRHTFG 243 (362)
Q Consensus 164 ~~l~~qk~~~~~~~~~~~~ry~~~~iiwL~~dre~L~~l~~~~~~~~RI~~Rvd~Mle~~~G~~~~~~~~l~~Ev~~~~~ 243 (362)
++....+. +..| +++++||.++|++| ++||++||++|+++ | |++||+
T Consensus 141 ~~~~~~~~---------~~~~-~~~~i~L~~~r~~L---------~~RI~~Rvd~Ml~~--G--------lleEv~---- 187 (253)
T PF01715_consen 141 EWQKKQKP---------PPRY-DFLVIGLDRDREEL---------YERINKRVDEMLEQ--G--------LLEEVR---- 187 (253)
T ss_dssp HHHHCHHH---------CBSS-EEEEEEEESSHHHH---------HHHHHHHHHHHHHT--T--------HHHHHH----
T ss_pred Hhhhcccc---------cccC-CeEEEEeCCCHHHH---------HHHHHHHHHHHHHh--H--------HHHHHH----
Confidence 98776322 2356 78999999999999 99999999999999 9 999999
Q ss_pred hhhhhhccCccccccccccccccCcceeechHHHHHHHHHHhhCccChHHHHHHHHhhhcCCCCccccccc
Q psy10922 244 TFGSQFGARHTYTVISRDAAFYVGIRQTNNIQPTHRSVRMIYANLCCVHTSSTAVNRCRLKPSTLPRQHRF 314 (362)
Q Consensus 244 ~l~~~~~~~~~~~~~~~~~~~~~g~~qaIGykE~~~yl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 314 (362)
.|.+++. ....++||||||||+.+||+ |+++.+++++.+++.- ..+++||..|
T Consensus 188 ~L~~~~~------------~~~~~~~~aIGYkE~~~~l~----g~~~~~e~~e~i~~~T--rqyAKRQ~TW 240 (253)
T PF01715_consen 188 ALLERGL------------PPDLPAMQAIGYKEFIDYLE----GEISLEEAIERIKTNT--RQYAKRQRTW 240 (253)
T ss_dssp HHHHTTG------------GTTSCGGGSTTHHHHHHHHT----TSSCHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHcCC------------CCcchhceeeehHHHHHhhc----CCCCHHHHHHHHHHHH--HHHHHHHHHH
Confidence 6776542 11468999999999999997 8999999988886521 2244455443
No 5
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=100.00 E-value=1.6e-40 Score=321.05 Aligned_cols=221 Identities=19% Similarity=0.213 Sum_probs=180.2
Q ss_pred ccchhHHHHHHHHHHhCCCcchhhhhhhhhcCCCCCCCCCCCCceEEEEEecCCCccccccccccccccccccc--cchh
Q psy10922 25 LARCISSPALQVFYEHGRSIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQCDKDKMRPWRESNMWPSAYKTDA--LPTK 102 (362)
Q Consensus 25 ~~~i~s~RSLQIYr~tGigtSki~~eQ~~~~~~~~~~~~lR~ph~LI~WL~~drdvLdpRlVdsMv~~~~~~~a--~~~~ 102 (362)
-++|+++||||||++|+|+|+|+.++++. + +|||+++ ++++..++++. +|..+| .+.+
T Consensus 24 ~~~iis~Ds~qvY~~l~IgTakp~~~e~~--~---------v~hhlid-------~~~~~~~~~v~--~f~~~a~~~i~~ 83 (287)
T TIGR00174 24 NAEIISVDSMQIYKGMDIGTAKPSLQERE--G---------IPHHLID-------ILDPSESYSAA--DFQTLALNAIAD 83 (287)
T ss_pred CCcEEEechhheeeeccccCCCCCHHHHc--C---------ccEEEEE-------EechhheEcHH--HHHHHHHHHHHH
Confidence 36899999999999999999999998874 2 7899995 88888999996 999988 5999
Q ss_pred HHhhCCcEEEEecCCCC------------CCCHHHHHhhhhh----------------ccchhhhccccchhhhhHHHHH
Q psy10922 103 ITRLNGLLIYIGSSGTF------------ELSPDIRHTYVTN----------------CSGRVRSLTISTFLVSSRALQV 154 (362)
Q Consensus 103 i~~rgGLpiEVGGTGLY------------evd~~iR~~ll~~----------------~~g~lQaIg~nD~~RiiRALeV 154 (362)
|.++|++|++||||||| +.|+.+|+.+.+. .+..++.||+||.+|++|||||
T Consensus 84 ~~~~g~~pi~vGGTg~Yi~all~g~~~~p~~~~~~r~~l~~~~~~~g~~~l~~~L~~~DP~~a~~i~~nd~~Ri~RALEi 163 (287)
T TIGR00174 84 ITARGKIPLLVGGTGLYLKALLEGLSPTPSADKLIREQLEILAEEQGWDFLYNELKKVDPVAAAKIHPNDTRRVQRALEV 163 (287)
T ss_pred HHhCCCCEEEEcCcHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHhcCCccHHHHHHHHHH
Confidence 99999999999999999 2466677654211 2344569999999999999999
Q ss_pred HHhhCCChhhhhHHhhhhcCCCCCCCCCCCccceEEEEeCCCCCCCCCCCCCchHHHHHHHHHHHHhcccCCCccCCccc
Q psy10922 155 FYEHGRSIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQCDKEVPAPLNFHQISDIRILQVMSSMLTGIAGTFFSGTFEL 234 (362)
Q Consensus 155 ~~~tG~~~S~~l~~qk~~~~~~~~~~~~ry~~~~iiwL~~dre~L~~l~~~~~~~~RI~~Rvd~Mle~~~G~~~~~~~~l 234 (362)
|+.||+++|++..++. .+.+| +++++||.+||+.| ++||++||++|+++ | |
T Consensus 164 ~~~tG~~~s~~~~~~~---------~~~~~-~~~~i~l~~dr~~L---------~~rI~~Rv~~Mi~~--G--------l 214 (287)
T TIGR00174 164 FYATGKPPSELFKEQK---------IELFY-DAVQIGLASSREPL---------HQRIEQRVHDMLES--G--------L 214 (287)
T ss_pred HHHHCCChHHHhhccC---------CCCCC-CeEEEEECCCHHHH---------HHHHHHHHHHHHHC--C--------H
Confidence 9999999999754332 12356 67889999999999 99999999999999 9 9
Q ss_pred hhhHHhhHhhhhhhhccCccccccccccccccCcceeechHHHHHHHHHHhhCccChHHHHHHHHhhhcCCCCccccccc
Q psy10922 235 SPDIRHTFGTFGSQFGARHTYTVISRDAAFYVGIRQTNNIQPTHRSVRMIYANLCCVHTSSTAVNRCRLKPSTLPRQHRF 314 (362)
Q Consensus 235 ~~Ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~qaIGykE~~~yl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 314 (362)
++||+ .|.+... . .+.++||||||||+++||+ |+++.+++++++++.- ..+++||..|
T Consensus 215 ~eEv~----~l~~~~~--~----------~~~~~~~aIGYkE~~~~l~----g~~~~~e~ie~i~~~T--r~yAKRQ~TW 272 (287)
T TIGR00174 215 LAEVK----ALYAQYD--L----------CDLPSIQAIGYKEFLLYLE----GTVSLEDAIERIKCNT--RQYAKRQLTW 272 (287)
T ss_pred HHHHH----HHHhccC--C----------cCCchhhhccHHHHHHHHc----CCCCHHHHHHHHHHHH--HHHHHHHHHH
Confidence 99999 6665421 1 1468999999999999997 9999999888887632 2455666554
Q ss_pred cc
Q psy10922 315 TS 316 (362)
Q Consensus 315 ~~ 316 (362)
.+
T Consensus 273 fR 274 (287)
T TIGR00174 273 FR 274 (287)
T ss_pred hC
Confidence 43
No 6
>PLN02840 tRNA dimethylallyltransferase
Probab=100.00 E-value=6e-38 Score=316.36 Aligned_cols=234 Identities=15% Similarity=0.117 Sum_probs=176.9
Q ss_pred cchhHHHHHHHHHHhCCCcchhhhhhhhhcCCCCCCCCCCCCceEEEEEecCCCccccccccccccccccccc--cchhH
Q psy10922 26 ARCISSPALQVFYEHGRSIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQCDKDKMRPWRESNMWPSAYKTDA--LPTKI 103 (362)
Q Consensus 26 ~~i~s~RSLQIYr~tGigtSki~~eQ~~~~~~~~~~~~lR~ph~LI~WL~~drdvLdpRlVdsMv~~~~~~~a--~~~~i 103 (362)
++|+++||+|||++++|||+|++.+++. + +||||++ +++|.+.+++. +|..+| ++.+|
T Consensus 47 ~~iis~Ds~qvYr~~~IgTaKpt~eE~~--~---------V~Hhlid-------il~p~e~ySv~--~F~~~A~~~I~~i 106 (421)
T PLN02840 47 GEIISADSVQVYRGLDVGSAKPSLSERK--E---------VPHHLID-------ILHPSDDYSVG--AFFDDARRATQDI 106 (421)
T ss_pred CCeEeccccceecceeEEcCCCCHHHHc--C---------CCeEeEe-------ecCCCCceeHH--HHHHHHHHHHHHH
Confidence 5799999999999999999999998875 2 8999995 99999999996 999998 59999
Q ss_pred HhhCCcEEEEecCCCC------------CCCHHHHHhhhh------------h---------ccchhhhccccchhhhhH
Q psy10922 104 TRLNGLLIYIGSSGTF------------ELSPDIRHTYVT------------N---------CSGRVRSLTISTFLVSSR 150 (362)
Q Consensus 104 ~~rgGLpiEVGGTGLY------------evd~~iR~~ll~------------~---------~~g~lQaIg~nD~~RiiR 150 (362)
.++|++|++||||||| ..++++++++.. . .. ..++||+||.+|++|
T Consensus 107 ~~rgkiPIvVGGTGlYl~aLl~G~~~~p~~~~~~r~~l~~~l~~~~~~~g~~~l~~~Ll~~~DP-~A~~i~pnD~~Ri~R 185 (421)
T PLN02840 107 LNRGRVPIVAGGTGLYLRWYIYGKPDVPKSSPEITSEVWSELVDFQKNGDWDAAVELVVNAGDP-KARSLPRNDWYRLRR 185 (421)
T ss_pred HhcCCCEEEEcCccHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhccccCHHHHHHHHHhccCc-HHHhcCCCcHHHHHH
Confidence 9999999999999999 145665554311 0 22 446899999999999
Q ss_pred HHHHHHhhCCChhhhhH------HhhhhcCCC-----CC--CCCCCCccceEEEEeCCCCCCCCCCCCCchHHHHHHHHH
Q psy10922 151 ALQVFYEHGRSIHDILT------EQKSLEGGS-----LL--GGPLRFPNTVILWLQCDKEVPAPLNFHQISDIRILQVMS 217 (362)
Q Consensus 151 ALeV~~~tG~~~S~~l~------~qk~~~~~~-----~~--~~~~ry~~~~iiwL~~dre~L~~l~~~~~~~~RI~~Rvd 217 (362)
|||||+.||+++|+|.. +++...... .. ..+..| +++++||.+||++| |+||++||+
T Consensus 186 ALEV~~~TG~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y-~~~~i~L~~dR~~L---------y~RI~~Rvd 255 (421)
T PLN02840 186 SLEIIKSSGSPPSAFSLPYDSFREQLVTEDTDSSLEDGSSAETELDY-DFLCFFLSSPRLDL---------YRSIDLRCE 255 (421)
T ss_pred HHHHHHHHCCCHHHhhccccchhhccccccccccccccccccCCCCC-CeEEEEeCCCHHHH---------HHHHHHHHH
Confidence 99999999999999752 221110000 00 113457 67899999999999 999999999
Q ss_pred HHHh--cccCCCccCCccchhhHHhhHhhhhhhhccCccccccccccccccCcceeechHHHHHHHHHHhh--CccChHH
Q psy10922 218 SMLT--GIAGTFFSGTFELSPDIRHTFGTFGSQFGARHTYTVISRDAAFYVGIRQTNNIQPTHRSVRMIYA--NLCCVHT 293 (362)
Q Consensus 218 ~Mle--~~~G~~~~~~~~l~~Ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~qaIGykE~~~yl~~~~~--~~~~~~~ 293 (362)
+|++ + | |++||+ .|++... + ++ ..++||+|||||+++||+.... |+++.++
T Consensus 256 ~Ml~~~~--G--------LleEV~----~Ll~~g~--~--------~~-~~~a~~aIGYkE~~~yL~~~~~~~G~~s~ee 310 (421)
T PLN02840 256 EMLAGTN--G--------ILSEAS----WLLDLGL--L--------PN-SNSATRAIGYRQAMEYLLQCRQNGGESSPQE 310 (421)
T ss_pred HHHHccc--C--------HHHHHH----HHHHcCC--C--------cc-ccchHHHhcHHHHHHHHHhhcccCCCCCHHH
Confidence 9999 9 9 999999 6665422 1 10 2479999999999999973332 8888887
Q ss_pred HHHHHHhhh-cCCCCcccccccc
Q psy10922 294 SSTAVNRCR-LKPSTLPRQHRFT 315 (362)
Q Consensus 294 ~~~~i~~~~-~~~~~~~~~~~~~ 315 (362)
+.+.+.+.. .-+.+++||..|.
T Consensus 311 ~~~~~e~i~~~TRqYAKRQ~TWF 333 (421)
T PLN02840 311 FLAFLSKFQTASRNFAKRQMTWF 333 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 764333321 1234555554443
No 7
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=100.00 E-value=1.4e-37 Score=302.84 Aligned_cols=219 Identities=18% Similarity=0.223 Sum_probs=176.6
Q ss_pred ccchhHHHHHHHHHHhCCCcchhhhhhhhhcCCCCCCCCCCCCceEEEEEecCCCccccccccccccccccccc--cchh
Q psy10922 25 LARCISSPALQVFYEHGRSIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQCDKDKMRPWRESNMWPSAYKTDA--LPTK 102 (362)
Q Consensus 25 ~~~i~s~RSLQIYr~tGigtSki~~eQ~~~~~~~~~~~~lR~ph~LI~WL~~drdvLdpRlVdsMv~~~~~~~a--~~~~ 102 (362)
-++|+++||+|||++++++|+|+.+++.. + +|||++ |++++...+++. +|.++| .+.+
T Consensus 29 ~~~iis~Ds~Qvy~~l~i~Takp~~~E~~--g---------v~hhli-------d~~~~~~~~s~~--~f~~~a~~~i~~ 88 (307)
T PRK00091 29 NGEIISADSMQVYRGMDIGTAKPTAEERA--G---------VPHHLI-------DILDPTESYSVA--DFQRDALAAIAD 88 (307)
T ss_pred CCcEEeccccceeecccccCCCCCHHHHc--C---------ccEEee-------cccChhhcccHH--HHHHHHHHHHHH
Confidence 36899999999999999999999998874 2 789999 589998888885 999988 4999
Q ss_pred HHhhCCcEEEEecCCCC------------CCCHHHHHhhhhh----------------ccchhhhccccchhhhhHHHHH
Q psy10922 103 ITRLNGLLIYIGSSGTF------------ELSPDIRHTYVTN----------------CSGRVRSLTISTFLVSSRALQV 154 (362)
Q Consensus 103 i~~rgGLpiEVGGTGLY------------evd~~iR~~ll~~----------------~~g~lQaIg~nD~~RiiRALeV 154 (362)
|.++|++|++|||||+| +.++.+|+++... ++...+.||+||.+|++|||||
T Consensus 89 i~~~gk~pIlvGGt~~Y~~al~~g~~~~p~~~~~~r~~l~~~~~~~g~~~l~~~L~~~Dp~~a~~i~~~d~~Ri~RAlEi 168 (307)
T PRK00091 89 ILARGKLPILVGGTGLYIKALLEGLSPLPPADPELRAELEALAAEEGWEALHAELAEIDPEAAARIHPNDPQRIIRALEV 168 (307)
T ss_pred HHhCCCCEEEECcHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHhcCHHHHhhcCCCCCchhHHHHHH
Confidence 99999999999999999 1356666655221 2344468999999999999999
Q ss_pred HHhhCCChhhhhHHhhhhcCCCCCCCCCCCccceEEEEeCCCCCCCCCCCCCchHHHHHHHHHHHHhcccCCCccCCccc
Q psy10922 155 FYEHGRSIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQCDKEVPAPLNFHQISDIRILQVMSSMLTGIAGTFFSGTFEL 234 (362)
Q Consensus 155 ~~~tG~~~S~~l~~qk~~~~~~~~~~~~ry~~~~iiwL~~dre~L~~l~~~~~~~~RI~~Rvd~Mle~~~G~~~~~~~~l 234 (362)
|..||+++|++... . .+.+| +++++||.+||++| ++||++||++|+++ | |
T Consensus 169 ~~~tG~~~s~~~~~-~---------~~~~~-~~~~~~l~~dr~~L---------~~rI~~Rv~~Ml~~--G--------l 218 (307)
T PRK00091 169 YELTGKPLSELQKR-G---------KPPPY-RVLIIGLDPDREEL---------YERINQRVDQMLEQ--G--------L 218 (307)
T ss_pred HHHHCCChhhhhhc-c---------ccCCC-CeEEEEEcCCHHHH---------HHHHHHHHHHHHHC--c--------H
Confidence 99999999997432 1 12456 67899999999999 99999999999999 9 9
Q ss_pred hhhHHhhHhhhhhhhccCccccccccccccccCcceeechHHHHHHHHHHhhCccChHHHHHHHHhhhcCCCCccccccc
Q psy10922 235 SPDIRHTFGTFGSQFGARHTYTVISRDAAFYVGIRQTNNIQPTHRSVRMIYANLCCVHTSSTAVNRCRLKPSTLPRQHRF 314 (362)
Q Consensus 235 ~~Ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~qaIGykE~~~yl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 314 (362)
++||+ .|.+... +. ..++||||||||+.+||+ |+.+++++++++++.- ..+++||..|
T Consensus 219 ~eEv~----~l~~~~~----------~~--~~~~~~aIGykE~~~yl~----g~~s~~e~~e~i~~~T--r~yAKRQ~TW 276 (307)
T PRK00091 219 LEEVR----ALLARGY----------LP--DLPAMRAIGYKELLAYLD----GEISLEEAIEKIKQAT--RQYAKRQLTW 276 (307)
T ss_pred HHHHH----HHHHcCC----------CC--CCccceeecHHHHHHHHc----CCCCHHHHHHHHHHHH--HHHHHHHHHH
Confidence 99999 5554321 01 368999999999999997 9999988888776532 1345555444
Q ss_pred c
Q psy10922 315 T 315 (362)
Q Consensus 315 ~ 315 (362)
.
T Consensus 277 f 277 (307)
T PRK00091 277 F 277 (307)
T ss_pred h
Confidence 3
No 8
>PLN02165 adenylate isopentenyltransferase
Probab=99.95 E-value=1e-29 Score=250.30 Aligned_cols=167 Identities=19% Similarity=0.312 Sum_probs=128.1
Q ss_pred cchhHHHHHHHHHHhCCCcchhhhhhhhhcCCCCCCCCCCCCceEEEEEecCCCcccccc-ccccccccccccc--cchh
Q psy10922 26 ARCISSPALQVFYEHGRSIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQCDKDKMRPWR-ESNMWPSAYKTDA--LPTK 102 (362)
Q Consensus 26 ~~i~s~RSLQIYr~tGigtSki~~eQ~~~~~~~~~~~~lR~ph~LI~WL~~drdvLdpRl-VdsMv~~~~~~~a--~~~~ 102 (362)
.+|+++||+|||++++|+++|+..+++. + +|||+++ .+++.. .+++. +|..++ .+.+
T Consensus 69 ~eIIsaDs~QvYkgldIgTakpt~~er~--g---------v~Hhli~-------~~~~~~~~~sv~--~F~~~a~~~I~~ 128 (334)
T PLN02165 69 SEIINSDKMQVYDGLKITTNQITIQDRR--G---------VPHHLLG-------ELNPDDGELTAS--EFRSLASLSISE 128 (334)
T ss_pred CceecCChheeECCcccccCCCCHHHHc--C---------CChhhhh-------eeccccceeeHH--HHHHHHHHHHHH
Confidence 4789999999999999999999888764 2 7899994 888877 77875 888876 5899
Q ss_pred HHhhCCcEEEEecCCCCCCCHHHHHhhhhhccchhhhccccchhhhhHHHHHHHhhCCC-hhhhhHHhhhhcCCCCCCCC
Q psy10922 103 ITRLNGLLIYIGSSGTFELSPDIRHTYVTNCSGRVRSLTISTFLVSSRALQVFYEHGRS-IHDILTEQKSLEGGSLLGGP 181 (362)
Q Consensus 103 i~~rgGLpiEVGGTGLYevd~~iR~~ll~~~~g~lQaIg~nD~~RiiRALeV~~~tG~~-~S~~l~~qk~~~~~~~~~~~ 181 (362)
|.++|++|++|||||+|- +.++....++. +++ ..||++ +|..
T Consensus 129 i~~~~~~PI~vGGTglYi------~aLl~g~~dpe--~~p-------------~~tg~~~~s~~---------------- 171 (334)
T PLN02165 129 ITSRQKLPIVAGGSNSFI------HALLADRFDPE--IYP-------------FSSGSSLISSD---------------- 171 (334)
T ss_pred HHHCCCcEEEECChHHHH------HHHHcCCCCCc--cCh-------------hhcCCCccccc----------------
Confidence 999999999999999993 11111100000 110 257776 4421
Q ss_pred CCCccceEEEEeCCCCCCCCCCCCCchHHHHHHHHHHHHhcccCCCccCCccchhhHHhhHhhhhhhhccCccccccccc
Q psy10922 182 LRFPNTVILWLQCDKEVPAPLNFHQISDIRILQVMSSMLTGIAGTFFSGTFELSPDIRHTFGTFGSQFGARHTYTVISRD 261 (362)
Q Consensus 182 ~ry~~~~iiwL~~dre~L~~l~~~~~~~~RI~~Rvd~Mle~~~G~~~~~~~~l~~Ev~~~~~~l~~~~~~~~~~~~~~~~ 261 (362)
.+| +++++||.+||++| |+||++||++|+++ | |++||+ .|.+... +
T Consensus 172 ~~~-~~~~i~l~~dr~~L---------~~RI~~Rvd~Ml~~--G--------lldEv~----~L~~~~~----------~ 217 (334)
T PLN02165 172 LRY-DCCFIWVDVSEPVL---------FEYLSKRVDEMMDS--G--------MFEELA----EFYDPVK----------S 217 (334)
T ss_pred cCC-CeEEEEECCCHHHH---------HHHHHHHHHHHHHC--C--------HHHHHH----HHHHccC----------C
Confidence 236 67899999999999 99999999999999 9 999999 5554421 1
Q ss_pred cccccCcceeechHHHHHHHHH
Q psy10922 262 AAFYVGIRQTNNIQPTHRSVRM 283 (362)
Q Consensus 262 ~~~~~g~~qaIGykE~~~yl~~ 283 (362)
.++..|+||||||||+++||+.
T Consensus 218 ~~~~~~~~qaIGYkE~~~yL~~ 239 (334)
T PLN02165 218 GSEPLGIRKAIGVPEFDRYFKK 239 (334)
T ss_pred cccCCCceeEEcHHHHHHHHHh
Confidence 1224689999999999999973
No 9
>KOG1384|consensus
Probab=99.92 E-value=8.4e-27 Score=228.14 Aligned_cols=206 Identities=17% Similarity=0.256 Sum_probs=148.0
Q ss_pred cccchhHHHHHHHHHHhCCCcchhhhhhhhhcCCCCCCCCCCCCceEEEEEecCCCccccccccccccccccccc--cch
Q psy10922 24 RLARCISSPALQVFYEHGRSIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQCDKDKMRPWRESNMWPSAYKTDA--LPT 101 (362)
Q Consensus 24 ~~~~i~s~RSLQIYr~tGigtSki~~eQ~~~~~~~~~~~~lR~ph~LI~WL~~drdvLdpRlVdsMv~~~~~~~a--~~~ 101 (362)
--+|||+.|+||||+++|+.|.|++.+++. + +||||+ ++++|...++.. +|..+| .+.
T Consensus 31 f~~EIINsDkmQvYkGldivTnK~t~~e~~--g---------VPHHLl-------g~l~~~~e~t~~--~F~~~a~~aie 90 (348)
T KOG1384|consen 31 FPGEIINSDKMQVYKGLDIVTNKITLQERK--G---------VPHHLL-------GHLHPEAEYTAG--EFEDDASRAIE 90 (348)
T ss_pred CCceeecccceeeecCcccccccCChhhcC--C---------CChHHh-------CcCChHhhccHH--HHHHHHHHHHH
Confidence 447999999999999999999999888764 3 899999 699999888885 999999 599
Q ss_pred hHHhhCCcEEEEecCCCCCCCHHHHHhhhhhccchhhhccccchhhhhHHHHHHHhhCCChhhhhHHhhhhcCCCCCCCC
Q psy10922 102 KITRLNGLLIYIGSSGTFELSPDIRHTYVTNCSGRVRSLTISTFLVSSRALQVFYEHGRSIHDILTEQKSLEGGSLLGGP 181 (362)
Q Consensus 102 ~i~~rgGLpiEVGGTGLYevd~~iR~~ll~~~~g~lQaIg~nD~~RiiRALeV~~~tG~~~S~~l~~qk~~~~~~~~~~~ 181 (362)
+|+++|++|++||||++|. +.+...-.+. ++.| . ...||.++|++
T Consensus 91 ~I~~rgk~PIv~GGs~~yi--~al~~~~~d~------~~dp-----~------~~~~g~~pS~l---------------- 135 (348)
T KOG1384|consen 91 EIHSRGKLPIVVGGSNSYL--QALLSKRFDP------KIDP-----F------SSNTGSIPSEL---------------- 135 (348)
T ss_pred HHHhCCCCCEEeCCchhhH--HHHhhcCCCc------ccCc-----c------cccCCCCCccc----------------
Confidence 9999999999999999993 1111110000 1111 0 01178777773
Q ss_pred CCCccceEEEEeCCCCCCCCCCCCCchHHHHHHHHHHHHhcccCCCccCCccchhhHHhhHhhhhhhhccCccccccccc
Q psy10922 182 LRFPNTVILWLQCDKEVPAPLNFHQISDIRILQVMSSMLTGIAGTFFSGTFELSPDIRHTFGTFGSQFGARHTYTVISRD 261 (362)
Q Consensus 182 ~ry~~~~iiwL~~dre~L~~l~~~~~~~~RI~~Rvd~Mle~~~G~~~~~~~~l~~Ev~~~~~~l~~~~~~~~~~~~~~~~ 261 (362)
+| ++|++|++.+..+| ++++++|||+||++ | |++|++.+|+-..+.
T Consensus 136 -ry-d~c~lWlda~~~VL---------~~~l~~RVD~Ml~~--G--------l~eE~~~f~~~~~s~------------- 181 (348)
T KOG1384|consen 136 -RY-DCCFLWLDADQAVL---------FERLDKRVDDMLES--G--------LLEELRDFYDPYNSS------------- 181 (348)
T ss_pred -cc-ceEEEEEecchHHH---------HHHHHHHHHHHHHc--c--------hHHHHHHHhhhhhcC-------------
Confidence 57 89999999999999 99999999999999 9 999999544422221
Q ss_pred cccccCcceeechHHHHHHHHHHhh--CccChHHHHHHHHhhhcCCCCcccc--ccccccccCC
Q psy10922 262 AAFYVGIRQTNNIQPTHRSVRMIYA--NLCCVHTSSTAVNRCRLKPSTLPRQ--HRFTSSIDGR 321 (362)
Q Consensus 262 ~~~~~g~~qaIGykE~~~yl~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~ 321 (362)
+..|+.++||+.|+..|++..+- +.+ ...-..++++|.+.-++.||| .||..||-+.
T Consensus 182 --~~~~i~~~iGv~e~d~f~~~~~~~~~k~-d~~~~~~l~~aie~iK~nT~~lakrQ~~~I~~l 242 (348)
T KOG1384|consen 182 --YRSGIRKAIGVPEFDGFKEFYPWLTDKW-DLARKELLEKAIEAIKENTRRLAKRQKRKIEKL 242 (348)
T ss_pred --ccccchhccCcHHHhhhhhccccccchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12346666666666666654331 122 333355788888777766666 5555565554
No 10
>PLN02748 tRNA dimethylallyltransferase
Probab=99.15 E-value=1.5e-12 Score=134.17 Aligned_cols=173 Identities=13% Similarity=0.066 Sum_probs=119.2
Q ss_pred chhHHHHHHHHHHhCCCcchhhhhhhhhcCCCCCCCCCCCCceEEEEEecCCCcccccc---ccccccccccccccchhH
Q psy10922 27 RCISSPALQVFYEHGRSIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQCDKDKMRPWR---ESNMWPSAYKTDALPTKI 103 (362)
Q Consensus 27 ~i~s~RSLQIYr~tGigtSki~~eQ~~~~~~~~~~~~lR~ph~LI~WL~~drdvLdpRl---VdsMv~~~~~~~a~~~~i 103 (362)
..++.||||||..||++.|.+..++.....+ ...+++| +++++||++++++|+.|+ |+.|+
T Consensus 189 ~rRI~RALEI~~~TG~~~S~~~~~~~~~~~~--~~~~~~~-~~~~i~l~~~r~~L~~RI~~Rvd~Ml------------- 252 (468)
T PLN02748 189 HRKINRYLELYATTGVLPSKLYQGKAAENWG--RISNSRF-DCCFICVDADTAVLDRYVNQRVDCMI------------- 252 (468)
T ss_pred HHHHHHHHHHHHHHCcCHHHHhhhccccccc--cccCCCC-ceEEEEeCCCHHHHHHHHHHHHHHHH-------------
Confidence 4689999999999999999987655431111 1134567 589999999999999999 99999
Q ss_pred HhhCCcEEEEecCCCCCCCHHHHHhhhhhccchhhhccccchhhhhHHHHHHHhhCC-----------------------
Q psy10922 104 TRLNGLLIYIGSSGTFELSPDIRHTYVTNCSGRVRSLTISTFLVSSRALQVFYEHGR----------------------- 160 (362)
Q Consensus 104 ~~rgGLpiEVGGTGLYevd~~iR~~ll~~~~g~lQaIg~nD~~RiiRALeV~~~tG~----------------------- 160 (362)
+.||+.|| ..+.+...+...+++|+|||+++..+++++.--..+|.
T Consensus 253 --e~GlleEv---------~~l~~~~~~~~~~~~qaIGykE~~~yL~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 321 (468)
T PLN02748 253 --DAGLLDEV---------YDIYDPGADYTRGLRQAIGVREFEDFLRLYLSRNENGELTSSSNNDKVMKENSRKILNFPH 321 (468)
T ss_pred --HCCHHHHH---------HHHHhcCCCCCcccceeEcHHHHHHHHHhcccccccccccccccccchhhhhhhccccccc
Confidence 99999999 66666544456789999999999999986521001122
Q ss_pred ------ChhhhhHHhhhhcCCCCCCCCCCCccceEEEEeCCC----CCCCCCCCCCc----hHHHHHHHHHHHHhcccCC
Q psy10922 161 ------SIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQCDK----EVPAPLNFHQI----SDIRILQVMSSMLTGIAGT 226 (362)
Q Consensus 161 ------~~S~~l~~qk~~~~~~~~~~~~ry~~~~iiwL~~dr----e~L~~l~~~~~----~~~RI~~Rvd~Mle~~~G~ 226 (362)
...+-... .+..+.+|++.+.-|+..-. ..+..||.|++ +.+.|++.|......|+..
T Consensus 322 ~~~~~~~l~eaie~--------ik~~Tr~yAKRQ~tw~~rl~~~~~~~i~~lD~t~~~~~~~~~~W~~~V~~pa~~iv~~ 393 (468)
T PLN02748 322 DDKLKILLDEAIDQ--------VKLNTRRLVRRQKRRLHRLNTVFGWNIHYIDATEAILCKSEESWNAKVVKPAVEIVRR 393 (468)
T ss_pred hhhhhhhHHHHHHH--------HHHHHHHHHHHHHHHHhhhhhcccCCeeEeechhhhhhccHhHHHHHhHHHHHHHHHH
Confidence 11111111 11235567666666665311 12333677765 4699999999888888888
Q ss_pred CccCCccc
Q psy10922 227 FFSGTFEL 234 (362)
Q Consensus 227 ~~~~~~~l 234 (362)
|++|...-
T Consensus 394 fL~~~~~~ 401 (468)
T PLN02748 394 FLSDDTSS 401 (468)
T ss_pred HHcCCCCC
Confidence 88876533
No 11
>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....
Probab=98.64 E-value=5.2e-09 Score=100.05 Aligned_cols=91 Identities=16% Similarity=0.224 Sum_probs=77.9
Q ss_pred chhHHHHHHHHHHhCCCcchhhhhhhhhcCCCCCCCCCCCCceEEEEEecCCCcccccc---ccccccccccccccchhH
Q psy10922 27 RCISSPALQVFYEHGRSIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQCDKDKMRPWR---ESNMWPSAYKTDALPTKI 103 (362)
Q Consensus 27 ~i~s~RSLQIYr~tGigtSki~~eQ~~~~~~~~~~~~lR~ph~LI~WL~~drdvLdpRl---VdsMv~~~~~~~a~~~~i 103 (362)
..++.||||||+.||++.|.+...... ++++ +++++||++++++|+.|+ |+.|+
T Consensus 122 ~~Ri~RALei~~~tG~~~s~~~~~~~~---------~~~~-~~~~i~L~~~r~~L~~RI~~Rvd~Ml------------- 178 (253)
T PF01715_consen 122 RRRIIRALEIYELTGKPPSEWQKKQKP---------PPRY-DFLVIGLDRDREELYERINKRVDEML------------- 178 (253)
T ss_dssp HHHHHHHHHHHHHHSS-HHHHHHCHHH---------CBSS-EEEEEEEESSHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHhcCCChhHhhhcccc---------cccC-CeEEEEeCCCHHHHHHHHHHHHHHHH-------------
Confidence 568899999999999999998776332 2235 689999999999999999 99999
Q ss_pred HhhCCcEEEEecCCCCCCCHHHHHhhhhhccchhhhccccchhhhhHH
Q psy10922 104 TRLNGLLIYIGSSGTFELSPDIRHTYVTNCSGRVRSLTISTFLVSSRA 151 (362)
Q Consensus 104 ~~rgGLpiEVGGTGLYevd~~iR~~ll~~~~g~lQaIg~nD~~RiiRA 151 (362)
+.||+.|| ..+.+.......+++++|||+++..+++.
T Consensus 179 --~~GlleEv---------~~L~~~~~~~~~~~~~aIGYkE~~~~l~g 215 (253)
T PF01715_consen 179 --EQGLLEEV---------RALLERGLPPDLPAMQAIGYKEFIDYLEG 215 (253)
T ss_dssp --HTTHHHHH---------HHHHHTTGGTTSCGGGSTTHHHHHHHHTT
T ss_pred --HhHHHHHH---------HHHHHcCCCCcchhceeeehHHHHHhhcC
Confidence 99999999 88888876678899999999999988765
No 12
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=98.45 E-value=3.7e-08 Score=96.18 Aligned_cols=90 Identities=21% Similarity=0.304 Sum_probs=72.9
Q ss_pred chhHHHHHHHHHHhCCCcchhhhhhhhhcCCCCCCCCCCCCceEEEEEecCCCcccccc---ccccccccccccccchhH
Q psy10922 27 RCISSPALQVFYEHGRSIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQCDKDKMRPWR---ESNMWPSAYKTDALPTKI 103 (362)
Q Consensus 27 ~i~s~RSLQIYr~tGigtSki~~eQ~~~~~~~~~~~~lR~ph~LI~WL~~drdvLdpRl---VdsMv~~~~~~~a~~~~i 103 (362)
...+.||||||+.||++.|.+..++. .++++ +.+++||++|+++|+.|+ |+.|+
T Consensus 154 ~~Ri~RALEi~~~tG~~~s~~~~~~~---------~~~~~-~~~~i~l~~dr~~L~~rI~~Rv~~Mi------------- 210 (287)
T TIGR00174 154 TRRVQRALEVFYATGKPPSELFKEQK---------IELFY-DAVQIGLASSREPLHQRIEQRVHDML------------- 210 (287)
T ss_pred HHHHHHHHHHHHHHCCChHHHhhccC---------CCCCC-CeEEEEECCCHHHHHHHHHHHHHHHH-------------
Confidence 36789999999999999999643332 12345 578899999999999999 99999
Q ss_pred HhhCCcEEEEecCCCCCCCHHHHHhhhhhccchhhhccccchhhhhH
Q psy10922 104 TRLNGLLIYIGSSGTFELSPDIRHTYVTNCSGRVRSLTISTFLVSSR 150 (362)
Q Consensus 104 ~~rgGLpiEVGGTGLYevd~~iR~~ll~~~~g~lQaIg~nD~~RiiR 150 (362)
+.|++.|| ..+.+.......+++++|||+++..+++
T Consensus 211 --~~Gl~eEv---------~~l~~~~~~~~~~~~~aIGYkE~~~~l~ 246 (287)
T TIGR00174 211 --ESGLLAEV---------KALYAQYDLCDLPSIQAIGYKEFLLYLE 246 (287)
T ss_pred --HCCHHHHH---------HHHHhccCCcCCchhhhccHHHHHHHHc
Confidence 99999999 7776654434678999999999987765
No 13
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=98.36 E-value=7.8e-08 Score=94.57 Aligned_cols=89 Identities=16% Similarity=0.180 Sum_probs=72.2
Q ss_pred chhHHHHHHHHHHhCCCcchhhhhhhhhcCCCCCCCCCCCCceEEEEEecCCCcccccc---ccccccccccccccchhH
Q psy10922 27 RCISSPALQVFYEHGRSIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQCDKDKMRPWR---ESNMWPSAYKTDALPTKI 103 (362)
Q Consensus 27 ~i~s~RSLQIYr~tGigtSki~~eQ~~~~~~~~~~~~lR~ph~LI~WL~~drdvLdpRl---VdsMv~~~~~~~a~~~~i 103 (362)
...+.||||||..||++.|.+... . .++++ +.+++||++|+++|+.|+ |+.|+
T Consensus 159 ~~Ri~RAlEi~~~tG~~~s~~~~~--~--------~~~~~-~~~~~~l~~dr~~L~~rI~~Rv~~Ml------------- 214 (307)
T PRK00091 159 PQRIIRALEVYELTGKPLSELQKR--G--------KPPPY-RVLIIGLDPDREELYERINQRVDQML------------- 214 (307)
T ss_pred CchhHHHHHHHHHHCCChhhhhhc--c--------ccCCC-CeEEEEEcCCHHHHHHHHHHHHHHHH-------------
Confidence 457889999999999999986321 1 12346 588999999999999999 99999
Q ss_pred HhhCCcEEEEecCCCCCCCHHHHHhhhhhccchhhhccccchhhhhH
Q psy10922 104 TRLNGLLIYIGSSGTFELSPDIRHTYVTNCSGRVRSLTISTFLVSSR 150 (362)
Q Consensus 104 ~~rgGLpiEVGGTGLYevd~~iR~~ll~~~~g~lQaIg~nD~~RiiR 150 (362)
+.|++.|| ..+.+.......+++++|||+++..+++
T Consensus 215 --~~Gl~eEv---------~~l~~~~~~~~~~~~~aIGykE~~~yl~ 250 (307)
T PRK00091 215 --EQGLLEEV---------RALLARGYLPDLPAMRAIGYKELLAYLD 250 (307)
T ss_pred --HCcHHHHH---------HHHHHcCCCCCCccceeecHHHHHHHHc
Confidence 99999999 7776643334578999999999987765
No 14
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=98.31 E-value=1e-07 Score=93.63 Aligned_cols=87 Identities=21% Similarity=0.225 Sum_probs=70.9
Q ss_pred chhHHHHHHHHHHhCCCcchhhhhhhhhcCCCCCCCCCCCCceEEEEEecCCCcccccc---ccccccccccccccchhH
Q psy10922 27 RCISSPALQVFYEHGRSIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQCDKDKMRPWR---ESNMWPSAYKTDALPTKI 103 (362)
Q Consensus 27 ~i~s~RSLQIYr~tGigtSki~~eQ~~~~~~~~~~~~lR~ph~LI~WL~~drdvLdpRl---VdsMv~~~~~~~a~~~~i 103 (362)
...+.||||||..||++.|.+...+. + .+ +.+++||++++++|+.|+ |+.|+
T Consensus 158 ~~Ri~RALEv~~~tG~~~s~~~~~~~----------~-~~-~~~~i~l~~~r~~L~~rI~~Rv~~Ml------------- 212 (300)
T PRK14729 158 IYRIKRSLEVYYQTGIPISQFLKKQN----------M-FK-NILAIGLKRPMEEMKSRIISRVNNMI------------- 212 (300)
T ss_pred HHHHHHHHHHHHHhCCChHhhhhccC----------C-CC-CeEEEEeCCCHHHHHHHHHHHHHHHH-------------
Confidence 46899999999999999998543221 0 13 578899999999999999 99999
Q ss_pred HhhCCcEEEEecCCCCCCCHHHHHhhhhhccchhhhccccchhhhh
Q psy10922 104 TRLNGLLIYIGSSGTFELSPDIRHTYVTNCSGRVRSLTISTFLVSS 149 (362)
Q Consensus 104 ~~rgGLpiEVGGTGLYevd~~iR~~ll~~~~g~lQaIg~nD~~Rii 149 (362)
+.|++.|| ..+.+...+...+++|+|||+++..++
T Consensus 213 --~~GlieEv---------~~l~~~~~~~~~~~~~aIGYkE~~~yl 247 (300)
T PRK14729 213 --DCGLLSEI---------KSLLGKGYNENTPAFKGIGYREFLLWK 247 (300)
T ss_pred --HCCHHHHH---------HHHHhcCCCCCCCcceeEcHHHHHHHH
Confidence 99999999 766654344467899999999987765
No 15
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=5.5e-07 Score=88.94 Aligned_cols=108 Identities=14% Similarity=0.153 Sum_probs=82.2
Q ss_pred chhHHHHHHHHHHhCCCcchhhhhhhhhcCCCCCCCCCCCCceEEEEEecCCCcccccc---ccccccccccccccchhH
Q psy10922 27 RCISSPALQVFYEHGRSIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQCDKDKMRPWR---ESNMWPSAYKTDALPTKI 103 (362)
Q Consensus 27 ~i~s~RSLQIYr~tGigtSki~~eQ~~~~~~~~~~~~lR~ph~LI~WL~~drdvLdpRl---VdsMv~~~~~~~a~~~~i 103 (362)
...+.||||||+.||++.|.....+.. ....+ +.+++||.+++++|++|+ +|.|+
T Consensus 158 ~~Ri~RALEv~~~tGk~~s~~~~~~~~--------~~~~~-~~~~~~l~~~r~~L~~rI~~R~d~Ml------------- 215 (308)
T COG0324 158 PQRIIRALEVYYLTGKPISELQKRSRP--------ILEPY-DILIIALAADREVLYERINRRVDAML------------- 215 (308)
T ss_pred hhHHHHHHHHHHHHCCCHHHHhhcccC--------CCCCc-ceEEEEEeCCHHHHHHHHHHHHHHHH-------------
Confidence 456899999999999999886554321 11135 589999999999999999 99999
Q ss_pred HhhCCcEEEEecCCCCCCCHHHHHhhhhhccchhhhccccchhhhhH---HHHHHHhhCCChhhhhH
Q psy10922 104 TRLNGLLIYIGSSGTFELSPDIRHTYVTNCSGRVRSLTISTFLVSSR---ALQVFYEHGRSIHDILT 167 (362)
Q Consensus 104 ~~rgGLpiEVGGTGLYevd~~iR~~ll~~~~g~lQaIg~nD~~RiiR---ALeV~~~tG~~~S~~l~ 167 (362)
+.|++.|| ..+.++........+|+|||+++..++. .++-...-++.-+.-++
T Consensus 216 --~~Gli~EV---------~~L~~~g~~~~~~~~~~iGy~e~~~yl~g~~~~~ea~~~~~~~TRqyA 271 (308)
T COG0324 216 --EQGLIEEV---------KALYARGLHLDLPAMQAIGYKEILAYLDGGISLEEAIERIKTATRQYA 271 (308)
T ss_pred --HccHHHHH---------HHHHhccCCccchHHHhcCHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 99999999 7776665556789999999999998887 45444444443333333
No 16
>PLN02840 tRNA dimethylallyltransferase
Probab=98.07 E-value=1e-06 Score=90.32 Aligned_cols=101 Identities=12% Similarity=0.041 Sum_probs=74.5
Q ss_pred chhHHHHHHHHHHhCCCcchhhh------hhhhhcCCC-----CC--CCCCCCCceEEEEEecCCCcccccc---ccccc
Q psy10922 27 RCISSPALQVFYEHGRSIHDILT------EQKSLEGGS-----LL--GGPLRFPNTVILWLQCDKDKMRPWR---ESNMW 90 (362)
Q Consensus 27 ~i~s~RSLQIYr~tGigtSki~~------eQ~~~~~~~-----~~--~~~lR~ph~LI~WL~~drdvLdpRl---VdsMv 90 (362)
...+.||||||+.||++.|.+.. ++.....+. .. ..+++| +.+++||++++++|++|+ |+.|+
T Consensus 180 ~~Ri~RALEV~~~TG~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y-~~~~i~L~~dR~~Ly~RI~~Rvd~Ml 258 (421)
T PLN02840 180 WYRLRRSLEIIKSSGSPPSAFSLPYDSFREQLVTEDTDSSLEDGSSAETELDY-DFLCFFLSSPRLDLYRSIDLRCEEML 258 (421)
T ss_pred HHHHHHHHHHHHHHCCCHHHhhccccchhhccccccccccccccccccCCCCC-CeEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 36789999999999999998642 221100000 00 113456 578999999999999999 99999
Q ss_pred cccccccccchhHHhh--CCcEEEEecCCCCCCCHHHHHhhhhh-ccchhhhccccchhhhhHHH
Q psy10922 91 PSAYKTDALPTKITRL--NGLLIYIGSSGTFELSPDIRHTYVTN-CSGRVRSLTISTFLVSSRAL 152 (362)
Q Consensus 91 ~~~~~~~a~~~~i~~r--gGLpiEVGGTGLYevd~~iR~~ll~~-~~g~lQaIg~nD~~RiiRAL 152 (362)
+ .||+.|| ..+.+..+.. ...++++|||+++..++++.
T Consensus 259 ---------------~~~~GLleEV---------~~Ll~~g~~~~~~~a~~aIGYkE~~~yL~~~ 299 (421)
T PLN02840 259 ---------------AGTNGILSEA---------SWLLDLGLLPNSNSATRAIGYRQAMEYLLQC 299 (421)
T ss_pred ---------------HcccCHHHHH---------HHHHHcCCCccccchHHHhcHHHHHHHHHhh
Confidence 8 8999999 7776654333 35799999999999988743
No 17
>PLN02165 adenylate isopentenyltransferase
Probab=97.69 E-value=1.3e-06 Score=87.07 Aligned_cols=63 Identities=11% Similarity=0.273 Sum_probs=52.8
Q ss_pred CCCCceEEEEEecCCCcccccc---ccccccccccccccchhHHhhCCcEEEEecCCCCCCCHHHHHhhhhh--ccchhh
Q psy10922 64 LRFPNTVILWLQCDKDKMRPWR---ESNMWPSAYKTDALPTKITRLNGLLIYIGSSGTFELSPDIRHTYVTN--CSGRVR 138 (362)
Q Consensus 64 lR~ph~LI~WL~~drdvLdpRl---VdsMv~~~~~~~a~~~~i~~rgGLpiEVGGTGLYevd~~iR~~ll~~--~~g~lQ 138 (362)
+++ +++++||++++++|+.|+ |+.|+ +.|++.|| ..+.+...+. ..+++|
T Consensus 172 ~~~-~~~~i~l~~dr~~L~~RI~~Rvd~Ml---------------~~GlldEv---------~~L~~~~~~~~~~~~~~q 226 (334)
T PLN02165 172 LRY-DCCFIWVDVSEPVLFEYLSKRVDEMM---------------DSGMFEEL---------AEFYDPVKSGSEPLGIRK 226 (334)
T ss_pred cCC-CeEEEEECCCHHHHHHHHHHHHHHHH---------------HCCHHHHH---------HHHHHccCCcccCCCcee
Confidence 456 578999999999999999 99999 89999999 7777654333 358999
Q ss_pred hccccchhhhhHH
Q psy10922 139 SLTISTFLVSSRA 151 (362)
Q Consensus 139 aIg~nD~~RiiRA 151 (362)
+|||+++..++++
T Consensus 227 aIGYkE~~~yL~~ 239 (334)
T PLN02165 227 AIGVPEFDRYFKK 239 (334)
T ss_pred EEcHHHHHHHHHh
Confidence 9999999988773
No 18
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=95.49 E-value=0.007 Score=57.91 Aligned_cols=30 Identities=17% Similarity=0.006 Sum_probs=20.6
Q ss_pred cccchhHHHHHHHHHHhCCCcchhhhhhhh
Q psy10922 24 RLARCISSPALQVFYEHGRSIHDILTEQKS 53 (362)
Q Consensus 24 ~~~~i~s~RSLQIYr~tGigtSki~~eQ~~ 53 (362)
--+++++.|++|+|.++.++++++.+++..
T Consensus 25 ~g~pvI~~Driq~y~~l~v~Sgrp~~~el~ 54 (233)
T PF01745_consen 25 TGAPVISLDRIQCYPELSVGSGRPTPSELK 54 (233)
T ss_dssp H--EEEEE-SGGG-GGGTTTTT---SGGGT
T ss_pred hCCCEEEecceecccccccccCCCCHHHHc
Confidence 357899999999999999999999887764
No 19
>KOG1384|consensus
Probab=95.15 E-value=0.0055 Score=61.59 Aligned_cols=35 Identities=29% Similarity=0.511 Sum_probs=32.0
Q ss_pred CCCCCceEEEEEecCCCcccccc---ccccccccccccccchhHHhhCCcEEEE
Q psy10922 63 PLRFPNTVILWLQCDKDKMRPWR---ESNMWPSAYKTDALPTKITRLNGLLIYI 113 (362)
Q Consensus 63 ~lR~ph~LI~WL~~drdvLdpRl---VdsMv~~~~~~~a~~~~i~~rgGLpiEV 113 (362)
.+|| .+|++||++++.||++++ ||.|+ +.|+++|+
T Consensus 134 ~lry-d~c~lWlda~~~VL~~~l~~RVD~Ml---------------~~Gl~eE~ 171 (348)
T KOG1384|consen 134 ELRY-DCCFLWLDADQAVLFERLDKRVDDML---------------ESGLLEEL 171 (348)
T ss_pred cccc-ceEEEEEecchHHHHHHHHHHHHHHH---------------HcchHHHH
Confidence 4467 599999999999999999 99999 88999999
No 20
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=55.54 E-value=11 Score=32.68 Aligned_cols=32 Identities=6% Similarity=0.006 Sum_probs=26.5
Q ss_pred cceeech---------HHHHHHHHHHhhCccChHHHHHHHH
Q psy10922 268 IRQTNNI---------QPTHRSVRMIYANLCCVHTSSTAVN 299 (362)
Q Consensus 268 ~~qaIGy---------kE~~~yl~~~~~~~~~~~~~~~~i~ 299 (362)
+.+++|| .+...-|+++..|++|+++|...|+
T Consensus 73 ii~~lg~~~~~~~~~~~~~~~IL~~L~~GeIs~eeA~~~Lk 113 (113)
T PF09862_consen 73 IIEKLGYEEDEEEEEEDERKEILDKLEKGEISVEEALEILK 113 (113)
T ss_pred HHHHhCCCCCcccccchhHHHHHHHHHcCCCCHHHHHHHhC
Confidence 6778888 5566778888899999999998874
No 21
>smart00459 Sorb Sorbin homologous domain. First found in the peptide hormone sorbin and later in the ponsin/ArgBP2/vinexin family of proteins.
Probab=37.11 E-value=21 Score=26.94 Aligned_cols=20 Identities=15% Similarity=0.405 Sum_probs=15.5
Q ss_pred hhhhhhHHHHHhhhhhcccC
Q psy10922 340 IIKISHRLYKEMYKTVSLEE 359 (362)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~ 359 (362)
-++-+++.||.|||++--..
T Consensus 24 ~v~~~~dWYk~MfkqiHk~~ 43 (50)
T smart00459 24 SVERPKDWYRTMFKQIHRKG 43 (50)
T ss_pred CcccHHHHHHHHHHHHHccC
Confidence 34778999999999976543
No 22
>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.25 E-value=54 Score=28.63 Aligned_cols=28 Identities=4% Similarity=-0.040 Sum_probs=22.0
Q ss_pred eeechHHHHHHHHHHhhCccChHHHHHHHHh
Q psy10922 270 QTNNIQPTHRSVRMIYANLCCVHTSSTAVNR 300 (362)
Q Consensus 270 qaIGykE~~~yl~~~~~~~~~~~~~~~~i~~ 300 (362)
+-||=+.++.-|. .|++++++|+..+++
T Consensus 95 ~~i~~~~i~~qle---~Gei~peeA~~~L~k 122 (122)
T COG3877 95 VNIGKKKIIDQLE---KGEISPEEAIKMLNK 122 (122)
T ss_pred hhhhHHHHHHHHH---cCCCCHHHHHHHhcC
Confidence 5577777766555 899999999998874
No 23
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=20.81 E-value=58 Score=24.24 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=13.4
Q ss_pred hhhhhhHHHHHhhhhhc
Q psy10922 340 IIKISHRLYKEMYKTVS 356 (362)
Q Consensus 340 ~~~~~~~~~~~~~~~~~ 356 (362)
-.+-+++.||.|||.+-
T Consensus 21 ~vd~~kDWYktMFkqIH 37 (47)
T PF02208_consen 21 NVDRPKDWYKTMFKQIH 37 (47)
T ss_pred cccchhHHHHHHHHHHH
Confidence 34667999999999753
Done!