Query psy10922
Match_columns 362
No_of_seqs 249 out of 969
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 21:57:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10922.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10922hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3exa_A TRNA delta(2)-isopenten 100.0 3.7E-42 1.3E-46 335.6 3.8 220 26-321 29-281 (322)
2 3foz_A TRNA delta(2)-isopenten 100.0 1.4E-41 4.9E-46 330.8 3.1 207 26-300 36-273 (316)
3 3eph_A TRNA isopentenyltransfe 100.0 1.1E-41 3.9E-46 341.3 1.5 257 26-350 28-329 (409)
4 3crm_A TRNA delta(2)-isopenten 100.0 3.4E-36 1.2E-40 293.5 -0.9 229 26-315 31-292 (323)
5 3d3q_A TRNA delta(2)-isopenten 100.0 7.2E-35 2.4E-39 286.0 2.3 218 26-315 33-284 (340)
6 3a8t_A Adenylate isopentenyltr 99.9 8.9E-29 3E-33 242.8 -4.2 236 26-349 66-338 (339)
7 3exa_A TRNA delta(2)-isopenten 98.6 7.4E-09 2.5E-13 101.2 2.8 91 27-151 159-252 (322)
8 3eph_A TRNA isopentenyltransfe 98.6 9.2E-09 3.2E-13 103.3 1.0 91 27-151 157-257 (409)
9 3d3q_A TRNA delta(2)-isopenten 98.4 4.4E-08 1.5E-12 96.1 1.1 90 27-151 166-258 (340)
10 3foz_A TRNA delta(2)-isopenten 98.4 2.9E-08 9.9E-13 96.8 -0.7 91 27-151 165-260 (316)
11 3crm_A TRNA delta(2)-isopenten 98.2 7.1E-08 2.4E-12 94.0 -2.8 100 27-151 160-266 (323)
12 2ze6_A Isopentenyl transferase 98.0 5.4E-07 1.8E-11 83.2 -0.3 196 26-327 27-235 (253)
13 3a8t_A Adenylate isopentenyltr 93.1 0.0046 1.6E-07 60.7 -3.9 60 68-151 174-243 (339)
14 2qmh_A HPR kinase/phosphorylas 46.9 0.35 1.2E-05 44.4 -7.1 49 25-99 58-113 (205)
No 1
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=100.00 E-value=3.7e-42 Score=335.61 Aligned_cols=220 Identities=18% Similarity=0.253 Sum_probs=173.3
Q ss_pred cchhHHHHHHHHHHhCCCcchhhhhhhhhcCCCCCCCCCCCCceEEEEEecCCCccccccccccccccccccc--cchhH
Q psy10922 26 ARCISSPALQVFYEHGRSIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQCDKDKMRPWRESNMWPSAYKTDA--LPTKI 103 (362)
Q Consensus 26 ~~i~s~RSLQIYr~tGigtSki~~eQ~~~~~~~~~~~~lR~ph~LI~WL~~drdvLdpRlVdsMv~~~~~~~a--~~~~i 103 (362)
.+++++||+|||++++|+|+|+.+++.. + +|||++ |++++...+++. +|..+| .+++|
T Consensus 29 ~~iis~Ds~QvYr~~~igTakp~~~E~~--g---------vphhli-------d~~~~~e~~s~~--~F~~~a~~~i~~i 88 (322)
T 3exa_A 29 GEVISGDSMQVYRGMDIGTAKITAEEMD--G---------VPHHLI-------DIKDPSESFSVA--DFQDLATPLITEI 88 (322)
T ss_dssp EEEEECCGGGGBTTCCTTTTCCCHHHHT--T---------CCEESS-------SCBCTTSCCCHH--HHHHHHHHHHHHH
T ss_pred cceeecCcccceeeeeecCCCCCHHHHc--C---------CCEEEe-------ccCChhhhccHH--HHHHHHHHHHHHH
Confidence 5899999999999999999999998875 2 789999 699999999986 999988 59999
Q ss_pred HhhCCcEEEEecCCCC-----------C--CCHHHHHhhhhh----------------ccchhhhccccchhhhhHHHHH
Q psy10922 104 TRLNGLLIYIGSSGTF-----------E--LSPDIRHTYVTN----------------CSGRVRSLTISTFLVSSRALQV 154 (362)
Q Consensus 104 ~~rgGLpiEVGGTGLY-----------e--vd~~iR~~ll~~----------------~~g~lQaIg~nD~~RiiRALeV 154 (362)
.++|++|++||||||| + .|+++|+++... ++...++||+||.+|++|||||
T Consensus 89 ~~~gk~pIlVGGTglYi~aLl~g~~~~~~~~~~~~R~~l~~~~~~~g~~~L~~~L~~~DP~~A~~i~pnd~~Ri~RALEV 168 (322)
T 3exa_A 89 HERGRLPFLVGGTGLYVNAVIHQFNLGDIRADEDYRHELEAFVNSYGVQALHDKLSKIDPKAAAAIHPNNYRRVIRALEI 168 (322)
T ss_dssp HHTTCEEEEESCCHHHHHHHHHTCCCCCCBCCHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSCTTCHHHHHHHHHH
T ss_pred HhCCCcEEEEcCcHHHHHHHHcCCcCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHhhCHHHHhhcCcccHHHHHHHHHH
Confidence 9999999999999999 1 467888765221 2234468999999999999999
Q ss_pred HHhhCCChhhhhHHhhhhcCCCCCCCCCCCccceEEEEeCCCCCCCCCCCCCchHHHHHHHHHHHHhcccCCCccCCccc
Q psy10922 155 FYEHGRSIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQCDKEVPAPLNFHQISDIRILQVMSSMLTGIAGTFFSGTFEL 234 (362)
Q Consensus 155 ~~~tG~~~S~~l~~qk~~~~~~~~~~~~ry~~~~iiwL~~dre~L~~l~~~~~~~~RI~~Rvd~Mle~~~G~~~~~~~~l 234 (362)
|+.||+|+|++..+++. .+.+| ++++|||.+||++| |+||++|||+|+++ | |
T Consensus 169 ~~~TG~~~S~~~~~~~~--------~~~~~-~~~~i~L~~~R~~L---------~~RI~~Rvd~Ml~~--G--------l 220 (322)
T 3exa_A 169 IKLTGKTVTEQARHEEE--------TPSPY-NLVMIGLTMERDVL---------YDRINRRVDQMVEE--G--------L 220 (322)
T ss_dssp HHHTC----------------------CCS-EEEEEEEECCHHHH---------HHHHHHHHHHHHHH--T--------H
T ss_pred HHHHCCCHHHHhhhccC--------CCCCC-ceEEEEEeCCHHHH---------HHHHHHHHHHHHHC--C--------H
Confidence 99999999998654431 13456 78999999999999 99999999999999 9 9
Q ss_pred hhhHHhhHhhhhhhhccCccccccccccccccCcceeechHHHHHHHHHHhhCccChHHHHHHHHhhhcCCCCcccc--c
Q psy10922 235 SPDIRHTFGTFGSQFGARHTYTVISRDAAFYVGIRQTNNIQPTHRSVRMIYANLCCVHTSSTAVNRCRLKPSTLPRQ--H 312 (362)
Q Consensus 235 ~~Ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~qaIGykE~~~yl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~ 312 (362)
++||+ .|.+++ .. ..++||||||||+++||+ |+++.+++++.+++ .||| +
T Consensus 221 ~eEv~----~L~~~~-~~------------~~~a~~aIGYkE~~~yL~----G~~sl~eaie~i~~-------~TR~yAK 272 (322)
T 3exa_A 221 IDEAK----KLYDRG-IR------------DCQSVQAIGYKEMYDYLD----GNVTLEEAIDTLKR-------NSRRYAK 272 (322)
T ss_dssp HHHHH----HHHHTT-CC------------SSTGGGSTTTHHHHHHHH----TSSCHHHHHHHHHH-------HHHHHHH
T ss_pred HHHHH----HHHhcC-CC------------cCccceeeeHHHHHHHHC----CCCCHHHHHHHHHH-------HHHHHHH
Confidence 99999 666543 11 368999999999999997 99999999988875 3444 3
Q ss_pred cccccccCC
Q psy10922 313 RFTSSIDGR 321 (362)
Q Consensus 313 ~~~~~~~~~ 321 (362)
||..|+++.
T Consensus 273 RQ~TWfR~~ 281 (322)
T 3exa_A 273 RQLTWFRNK 281 (322)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHhcCC
Confidence 444555543
No 2
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=100.00 E-value=1.4e-41 Score=330.78 Aligned_cols=207 Identities=14% Similarity=0.168 Sum_probs=175.4
Q ss_pred cchhHHHHHHHHHHhCCCcchhhhhhhhhcCCCCCCCCCCCCceEEEEEecCCCccccccccccccccccccc--cchhH
Q psy10922 26 ARCISSPALQVFYEHGRSIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQCDKDKMRPWRESNMWPSAYKTDA--LPTKI 103 (362)
Q Consensus 26 ~~i~s~RSLQIYr~tGigtSki~~eQ~~~~~~~~~~~~lR~ph~LI~WL~~drdvLdpRlVdsMv~~~~~~~a--~~~~i 103 (362)
.+++++||+|||++++|+|+|+.++|.. + +|||++ |++++...+++. +|..+| .+.+|
T Consensus 36 ~~iis~Ds~qvY~~~~igTakp~~~E~~--~---------v~hhli-------d~~~~~e~~s~~--~f~~~a~~~i~~i 95 (316)
T 3foz_A 36 VELISVDSALIYKGMDIGTAKPNAEELL--A---------APHRLL-------DIRDPSQAYSAA--DFRRDALAEMADI 95 (316)
T ss_dssp EEEEECCTTTTBTTCCTTTTCCCHHHHH--H---------SCEETS-------SCBCTTSCCCHH--HHHHHHHHHHHHH
T ss_pred CcEEecccccccccccccCCCCCHHHHc--C---------CCEEEe-------ccCCccccccHH--HHHHHHHHHHHHH
Confidence 5899999999999999999999998875 2 789999 699999999986 999988 59999
Q ss_pred HhhCCcEEEEecCCCC------------CCCHHHHHhhhhh----------------ccchhhhccccchhhhhHHHHHH
Q psy10922 104 TRLNGLLIYIGSSGTF------------ELSPDIRHTYVTN----------------CSGRVRSLTISTFLVSSRALQVF 155 (362)
Q Consensus 104 ~~rgGLpiEVGGTGLY------------evd~~iR~~ll~~----------------~~g~lQaIg~nD~~RiiRALeV~ 155 (362)
.++|++|++||||||| +.|+++|+.+... +....++||+||.+|++||||||
T Consensus 96 ~~~g~~pilVGGTglYi~all~gl~~~p~~~~~~R~~l~~~~~~~g~~~l~~~L~~~DP~~A~ri~pnd~~Ri~RALEV~ 175 (316)
T 3foz_A 96 TAAGRIPLLVGGTMLYFKALLEGLSPLPSADPEVRARIEQQAAEQGWESLHRQLQEVDPVAAARIHPNDPQRLSRALEVF 175 (316)
T ss_dssp HHTTCEEEEEESCHHHHHHHHSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHSCTTCHHHHHHHHHHH
T ss_pred HhCCCcEEEEcCcHHHHHHHHcCcCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHHhCHHHHhhCCCccHHHHHHHHHHH
Confidence 9999999999999999 2578888765221 22344689999999999999999
Q ss_pred HhhCCChhhhhHHhhhhcCCCCCCCCCCCccceEEEEeC-CCCCCCCCCCCCchHHHHHHHHHHHHhcccCCCccCCccc
Q psy10922 156 YEHGRSIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQC-DKEVPAPLNFHQISDIRILQVMSSMLTGIAGTFFSGTFEL 234 (362)
Q Consensus 156 ~~tG~~~S~~l~~qk~~~~~~~~~~~~ry~~~~iiwL~~-dre~L~~l~~~~~~~~RI~~Rvd~Mle~~~G~~~~~~~~l 234 (362)
+.||+|+|++..++. .+..| ++++|||.+ ||++| |+||++|||+|+++ | |
T Consensus 176 ~~TG~~~S~~~~~~~---------~~~~~-~~~~i~L~~~~R~~L---------~~RI~~Rvd~Ml~~--G--------l 226 (316)
T 3foz_A 176 FISGKTLTELTQTSG---------DALPY-QVHQFAIAPASRELL---------HQRIEQRFHQMLAS--G--------F 226 (316)
T ss_dssp HHHSSCHHHHHTSCC---------CCCSS-EEEEEEEECSSHHHH---------HHHHHHHHHHHHHT--T--------H
T ss_pred HHHCCCHHHHhhccC---------CCCCC-ceEEEEecCCCHHHH---------HHHHHHHHHHHHHC--C--------H
Confidence 999999999854321 23456 678999999 99999 99999999999999 9 9
Q ss_pred hhhHHhhHhhhhhhhccCccccccccccccccCcceeechHHHHHHHHHHhhCccChHHHHHHHHh
Q psy10922 235 SPDIRHTFGTFGSQFGARHTYTVISRDAAFYVGIRQTNNIQPTHRSVRMIYANLCCVHTSSTAVNR 300 (362)
Q Consensus 235 ~~Ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~qaIGykE~~~yl~~~~~~~~~~~~~~~~i~~ 300 (362)
++||+ .|.+++. -+ + ..++||+|||||+++||+ |+++.+++++.+++
T Consensus 227 ~eEv~----~L~~~~~-~~--------~--~~~~~~aIGYkE~~~yL~----G~~s~~eai~~~~~ 273 (316)
T 3foz_A 227 EAEVR----ALFARGD-LH--------T--DLPSIRCVGYRQMWSYLE----GEISYDEMVYRGVC 273 (316)
T ss_dssp HHHHH----HHHHHSC-CC--------T--TSTTTTSTTHHHHHHHHH----TSSCHHHHHHHHHH
T ss_pred HHHHH----HHHHccC-CC--------c--cCccceeeehhhHHHHhc----CCCCHHHHHHHHHH
Confidence 99999 6666531 01 1 468999999999999997 99999999998875
No 3
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=100.00 E-value=1.1e-41 Score=341.28 Aligned_cols=257 Identities=17% Similarity=0.221 Sum_probs=198.8
Q ss_pred cchhHHHHHHHHHHhCCCcchhhhhhhhhcCCCCCCCCCCCCceEEEEEecCCCccccccccccccccccccc--cchhH
Q psy10922 26 ARCISSPALQVFYEHGRSIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQCDKDKMRPWRESNMWPSAYKTDA--LPTKI 103 (362)
Q Consensus 26 ~~i~s~RSLQIYr~tGigtSki~~eQ~~~~~~~~~~~~lR~ph~LI~WL~~drdvLdpRlVdsMv~~~~~~~a--~~~~i 103 (362)
.+++++||||||++++|+|+|+..+++. + +|||++ |++++...+++. +|.++| ++.+|
T Consensus 28 ~~iis~Ds~QvYr~l~i~T~kp~~~E~~--g---------v~hhli-------d~~~~~~~~s~~--~F~~~a~~~i~~i 87 (409)
T 3eph_A 28 GEVINSDSMQVYKDIPIITNKHPLQERE--G---------IPHHVM-------NHVDWSEEYYSH--RFETECMNAIEDI 87 (409)
T ss_dssp EEEEECCTTTTBSSCTTTTTCCCGGGTT--T---------CCEESC-------SCBCTTSCCCHH--HHHHHHHHHHHHH
T ss_pred CeEeecCccceecccccccCCCCHHHHc--C---------chhhcC-------CccChHhHhhHH--HHHHHHHHHHHHH
Confidence 4799999999999999999999998874 2 789999 689998888886 999988 59999
Q ss_pred HhhCCcEEEEecCCCCC-------------CCHHHHHhh---------------hhhccchhhhccccchhhhhHHHHHH
Q psy10922 104 TRLNGLLIYIGSSGTFE-------------LSPDIRHTY---------------VTNCSGRVRSLTISTFLVSSRALQVF 155 (362)
Q Consensus 104 ~~rgGLpiEVGGTGLYe-------------vd~~iR~~l---------------l~~~~g~lQaIg~nD~~RiiRALeV~ 155 (362)
.++|++|++|||||||- .++.+++.. ..-.+...+.||+||.+|++||||||
T Consensus 88 ~~~g~~pilVGGTglYi~aLl~gl~~~~~~~~~~~r~~~~~~~~~g~~~L~~~L~~~DP~~A~rihpnd~~Ri~RALEV~ 167 (409)
T 3eph_A 88 HRRGKIPIVVGGTHYYLQTLFNKRVDTKSSERKLTRKQLDILESTDPDVIYNTLVKCDPDIATKYHPNDYRRVQRMLEIY 167 (409)
T ss_dssp HTTTCEEEEECSCGGGGGGGGTCSCCCSSSCCCCCHHHHHHHTCSSSSSHHHHHHHSCHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HhcCCCEEEECChHHHHHHHHccccCCCCccCHHHHHHHHHHhccCHHHHHHHHHHhCHHHHHhcCcccHHHHHHHHHHH
Confidence 99999999999999991 122233221 11133445689999999999999999
Q ss_pred HhhCCChhhhhHHhhhhcCCCCCCCCCCCccceEEEEeCCCCCCCCCCCCCchHHHHHHHHHHHHhcccCCCccCCccch
Q psy10922 156 YEHGRSIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQCDKEVPAPLNFHQISDIRILQVMSSMLTGIAGTFFSGTFELS 235 (362)
Q Consensus 156 ~~tG~~~S~~l~~qk~~~~~~~~~~~~ry~~~~iiwL~~dre~L~~l~~~~~~~~RI~~Rvd~Mle~~~G~~~~~~~~l~ 235 (362)
+.||+++|+++.+++ .+.+| ++++|||.++|++| |+||++|||+|+++ | |+
T Consensus 168 ~~TG~~~S~~~~~~~---------~~~~~-~~~~i~L~~~R~~L---------~~RI~~Rvd~Ml~~--G--------ll 218 (409)
T 3eph_A 168 YKTGKKPSETFNEQK---------ITLKF-DTLFLWLYSKPEPL---------FQRLDDRVDDMLER--G--------AL 218 (409)
T ss_dssp HHHCSCHHHHHHTCC---------CCCSS-EEEEEEEECCHHHH---------HHHHHHHHHHHHHT--T--------HH
T ss_pred HHHCCCHHHHHhhcc---------CCCCc-ceEEEEEeCCHHHH---------HHHHHHHHHHHHHC--c--------HH
Confidence 999999999876543 23467 78999999999999 99999999999999 9 99
Q ss_pred hhHHhhHhhhhhhhccCccccccccccccccCcceeechHHHHHHHHHHhhC-----ccChHHHHHHHHhhhcCCCCccc
Q psy10922 236 PDIRHTFGTFGSQFGARHTYTVISRDAAFYVGIRQTNNIQPTHRSVRMIYAN-----LCCVHTSSTAVNRCRLKPSTLPR 310 (362)
Q Consensus 236 ~Ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~qaIGykE~~~yl~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~~ 310 (362)
+||+ .|++.+...+. ...++..|+||||||||+++||+ | +++++++++.+++.- +.+++|
T Consensus 219 eEv~----~L~~~~~~~~~-----~~~~~~~~~~~aIGYkE~~~yL~----g~~~~~e~~l~eaie~ik~~T--RqyAKR 283 (409)
T 3eph_A 219 QEIK----QLYEYYSQNKF-----TPEQCENGVWQVIGFKEFLPWLT----GKTDDNTVKLEDCIERMKTRT--RQYAKR 283 (409)
T ss_dssp HHHH----HHHHHHTTTTC-----CGGGTTSGGGGSTTTGGGGGGGC-----------CCHHHHHHHHHHHH--HHHHHH
T ss_pred HHHH----HHHHhcccccc-----ccccccccchhcccHHHHHHHHc----CCCcccccCHHHHHHHHHHHH--HHHHHH
Confidence 9999 55544310000 01123578999999999999997 6 478888888887632 224556
Q ss_pred ccccccc---------ccCCcccccccc-ceeccccccchhhhhhHHHHH
Q psy10922 311 QHRFTSS---------IDGRRTSDLALT-RQVCKPTRLAIIKISHRLYKE 350 (362)
Q Consensus 311 ~~~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 350 (362)
|..|.+. |.-.+++|+..| ..|..| .++|...|+.+
T Consensus 284 Q~TWfR~~~~~~~~~~i~~lD~t~~~~W~~~V~~p----a~~iv~~fl~~ 329 (409)
T 3eph_A 284 QVKWIKKMLIPDIKGDIYLLDATDLSQWDTNASQR----AIAISNDFISN 329 (409)
T ss_dssp HHHHHHHTHHHHTTTCEEEEECSCTTTCTTTTHHH----HHHHHHHHHTT
T ss_pred HHHHHHhhcccccCCceEEEcCCChhHHHHHHHHH----HHHHHHHHhcC
Confidence 6433321 222377888888 888999 99999999877
No 4
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=100.00 E-value=3.4e-36 Score=293.51 Aligned_cols=229 Identities=14% Similarity=0.150 Sum_probs=137.4
Q ss_pred cchhHHHHHHHHHHhCCCcchhhhhhhhhcCCCCCCCCCCCCceEEEEEecCCCccccccccccccccccccc--cchhH
Q psy10922 26 ARCISSPALQVFYEHGRSIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQCDKDKMRPWRESNMWPSAYKTDA--LPTKI 103 (362)
Q Consensus 26 ~~i~s~RSLQIYr~tGigtSki~~eQ~~~~~~~~~~~~lR~ph~LI~WL~~drdvLdpRlVdsMv~~~~~~~a--~~~~i 103 (362)
.++++.||+|+|++++++|+++.+++.. + +|||++ |++++...++.. +|.+.+ .+.+|
T Consensus 31 ~~iis~Ds~qvy~~~~igTakp~~~e~~--g---------vph~li-------d~~~~~~~~~~~--~F~~~a~~~i~~i 90 (323)
T 3crm_A 31 CELISVDSALIYRGMDIGTAKPSRELLA--R---------YPHRLI-------DIRDPAESYSAA--EFRADALAAMAKA 90 (323)
T ss_dssp EEEEEECTTTTBTTCCTTTTCCCHHHHH--H---------SCEETS-------SCBCTTSCCCHH--HHHHHHHHHHHHH
T ss_pred CcEEeccchhhhcCCCcccCCCCHHHHc--C---------CCEEEe-------eccCcccccCHH--HHHHHHHHHHHHH
Confidence 5889999999999999999999988875 2 689999 588888777775 888877 58999
Q ss_pred HhhCCcEEEEecCCCC------------CCCHHHHHhhhhh----------------ccchhhhccccchhhhhHHHHHH
Q psy10922 104 TRLNGLLIYIGSSGTF------------ELSPDIRHTYVTN----------------CSGRVRSLTISTFLVSSRALQVF 155 (362)
Q Consensus 104 ~~rgGLpiEVGGTGLY------------evd~~iR~~ll~~----------------~~g~lQaIg~nD~~RiiRALeV~ 155 (362)
.++|+.|+.|||||+| ..++++|+++... .....++||+||.+|++||||||
T Consensus 91 ~~~g~~~IlvGGt~~y~~all~g~~~~p~~~~~~R~~l~~~~~~~g~~~l~~~L~~~Dp~~a~~i~~nd~~Ri~RALEv~ 170 (323)
T 3crm_A 91 TARGRIPLLVGGTMLYYKALLEGLADMPGADPEVRAAIEAEAQAEGWEALHRQLAEVDPESAARIHPNDPQRLMRALEVY 170 (323)
T ss_dssp HHTTCEEEEEESCHHHHHHHHCCC--------------------------------------------------------
T ss_pred HHcCCeEEEECCchhhHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHhCHHHHhhcCCCCHHHHHHHHHHH
Confidence 9999999999999999 1345666654211 22344699999999999999999
Q ss_pred HhhCCChhhhhHHhhhhcCC--CCCCCCCCCccceEEEEeCC-CCCCCCCCCCCchHHHHHHHHHHHHhcccCCCccCCc
Q psy10922 156 YEHGRSIHDILTEQKSLEGG--SLLGGPLRFPNTVILWLQCD-KEVPAPLNFHQISDIRILQVMSSMLTGIAGTFFSGTF 232 (362)
Q Consensus 156 ~~tG~~~S~~l~~qk~~~~~--~~~~~~~ry~~~~iiwL~~d-re~L~~l~~~~~~~~RI~~Rvd~Mle~~~G~~~~~~~ 232 (362)
+.||+++|+|..+++..... ........| ++++|||.++ |++| |+||++|||+|+++ |
T Consensus 171 ~~tG~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~~~r~~L---------~~RI~~Rvd~M~~~--G------- 231 (323)
T 3crm_A 171 RLGGVSMSDLRRRQSAEKADFDASGRNQLPY-TVAQLAIAPEQRQVL---------HARIAQRFRQMLEQ--G------- 231 (323)
T ss_dssp -----------------------------CS-EEEEEEEECSSHHHH---------HHHHHHHHHHHHHT--T-------
T ss_pred HHHCCCHHHHHhhccccccccccccccCCCC-ceEEEEEcCCCHHHH---------HHHHHHHHHHHHHC--C-------
Confidence 99999999986554311000 000012346 6789999996 9999 99999999999999 9
Q ss_pred cchhhHHhhHhhhhhhhccCccccccccccccccCcceeechHHHHHHHHHHhhCccChHHHHHHHHhhhcCCCCccccc
Q psy10922 233 ELSPDIRHTFGTFGSQFGARHTYTVISRDAAFYVGIRQTNNIQPTHRSVRMIYANLCCVHTSSTAVNRCRLKPSTLPRQH 312 (362)
Q Consensus 233 ~l~~Ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~qaIGykE~~~yl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 312 (362)
|++||+ .|.+++. + . ...++||+|||||+++||+ |+++++++++.+++.- +.+++||.
T Consensus 232 -l~~Ev~----~L~~~~~----~-----~--~~~~~~~aIGyke~~~yl~----g~~~~~eai~~~~~~T--r~yAKRQ~ 289 (323)
T 3crm_A 232 -FIAEVE----ALHARSD----L-----H--AGLPSIRAVGYRQVWDYLD----GKLSYAEMTERGIIAT--RQLAKRQF 289 (323)
T ss_dssp -HHHHHH----HHHTCTT----C-----C--TTSSGGGSTTHHHHHHHHT----TSSCHHHHHHHHHHHH--HHHHHHHH
T ss_pred -HHHHHH----HHHhcCC----C-----C--CCCcchheecHHHHHHHHc----CCCCHHHHHHHHHHHH--HHHHHHHH
Confidence 999999 5664320 0 0 1468999999999999997 9999999998887631 22455554
Q ss_pred ccc
Q psy10922 313 RFT 315 (362)
Q Consensus 313 ~~~ 315 (362)
.|.
T Consensus 290 TWf 292 (323)
T 3crm_A 290 TWL 292 (323)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 5
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=100.00 E-value=7.2e-35 Score=285.97 Aligned_cols=218 Identities=17% Similarity=0.218 Sum_probs=173.7
Q ss_pred cchhHHHHHHHHHHhCCCcchhhhhhhhhcCCCCCCCCCCCCceEEEEEecCCCccccccccccccccccccc--cchhH
Q psy10922 26 ARCISSPALQVFYEHGRSIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQCDKDKMRPWRESNMWPSAYKTDA--LPTKI 103 (362)
Q Consensus 26 ~~i~s~RSLQIYr~tGigtSki~~eQ~~~~~~~~~~~~lR~ph~LI~WL~~drdvLdpRlVdsMv~~~~~~~a--~~~~i 103 (362)
+++++.||+|||+.++++|+++..++.. + ++||++ +++++...++.. +|.+.+ .+++|
T Consensus 33 ~~iis~Ds~qvYr~~~i~Takp~~eE~~--~---------v~hhl~-------di~~~~~~~~~~--dF~~~a~~~i~~i 92 (340)
T 3d3q_A 33 GEIISGDSMQVYQGMDIGTAKVTTEEME--G---------IPHYMI-------DILPPDASFSAY--EFKKRAEKYIKDI 92 (340)
T ss_dssp EEEEECCSSTTBTTCCTTTTCCCTTTTT--T---------CCEESS-------SCBCTTSCCCHH--HHHHHHHHHHHHH
T ss_pred CceeccccccccccccccccCCCHHHHH--H---------HHHHHH-------HHhCCccccCHH--HHHHHHHHHHHHH
Confidence 5889999999999999999999887764 2 678998 577777766664 888877 47889
Q ss_pred HhhCCcEEEEecCCCC------------C-CCHH----HHHhhhh--------------h-ccchhhhccccchhhhhHH
Q psy10922 104 TRLNGLLIYIGSSGTF------------E-LSPD----IRHTYVT--------------N-CSGRVRSLTISTFLVSSRA 151 (362)
Q Consensus 104 ~~rgGLpiEVGGTGLY------------e-vd~~----iR~~ll~--------------~-~~g~lQaIg~nD~~RiiRA 151 (362)
..+++.|++|||||+| . .|++ ++.++.. . .+...+.|++||.+|++||
T Consensus 93 ~~~g~~~IlvGGt~ly~~~l~~~l~~~~~~~d~~~~~Rlrrrl~r~~~~G~~~l~~~L~~vdP~~a~~I~p~d~~Ri~RA 172 (340)
T 3d3q_A 93 TRRGKVPIIAGGTGLYIQSLLYNYAFEDESISEDKMKQVKLKLKELEHLNNNKLHEYLASFDKESAKDIHPNNRKRVLRA 172 (340)
T ss_dssp HHTTCEEEEECCCHHHHHHHHBCSCCC---CCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHCHHHHHHSCTTCHHHHHHH
T ss_pred HhCCCcEEEECChhhhHHHHHhcccccCCCCChHHHHHHHHHHHHHHhcCHHHHHHHHHhhCcHHHhhcCccCchhhhhH
Confidence 9999999999999999 2 4566 6666521 0 2233468999999999999
Q ss_pred HHHHHhhCCChhhhhHHhhhhcCCCCCCCCCCCccceEEEEeCCCCCCCCCCCCCchHHHHHHHHHHHHhcccCCCccCC
Q psy10922 152 LQVFYEHGRSIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQCDKEVPAPLNFHQISDIRILQVMSSMLTGIAGTFFSGT 231 (362)
Q Consensus 152 LeV~~~tG~~~S~~l~~qk~~~~~~~~~~~~ry~~~~iiwL~~dre~L~~l~~~~~~~~RI~~Rvd~Mle~~~G~~~~~~ 231 (362)
||||+.||+++|+|..+++. +..| ++++|||.++|++| |+||++|||+|+++ |
T Consensus 173 LEv~~~tG~~~s~~~~~~~~---------~~~~-~~~~~~L~~~r~~L---------~~RI~~Rvd~M~~~--G------ 225 (340)
T 3d3q_A 173 IEYYLKTKKLLSSRKKVQQF---------TENY-DTLLIGIEMSRETL---------YLRINKRVDIMLGH--G------ 225 (340)
T ss_dssp HHHHHHHCSCSHHHHHHHHH---------SBCS-EEEEEEEECCHHHH---------HHHHHHHHHHHHHH--T------
T ss_pred HHHHHHhCCChHHHhhhccC---------CCCC-ceEEEEeCCCHHHH---------HHHHHHHHHHHHHC--C------
Confidence 99999999999997654332 1236 68999999999999 99999999999999 9
Q ss_pred ccchhhHHhhHhhhhhhhccCccccccccccccccCcceeechHHHHHHHHHHhhCccChHHHHHHHHhhhcCCCCcccc
Q psy10922 232 FELSPDIRHTFGTFGSQFGARHTYTVISRDAAFYVGIRQTNNIQPTHRSVRMIYANLCCVHTSSTAVNRCRLKPSTLPRQ 311 (362)
Q Consensus 232 ~~l~~Ev~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~qaIGykE~~~yl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 311 (362)
|++||+ .|.+++. . ..++||||||||+++||+ |+++++++++.+++.- ..+++||
T Consensus 226 --l~~Ev~----~L~~~~~------------~-~~~~~~aIGyke~~~yl~----g~~~~~ea~~~~~~~T--r~yAKRQ 280 (340)
T 3d3q_A 226 --LFNEVQ----HLVEQGF------------E-ASQSMQAIGYKELVPVIK----GNISMENAVEKLKQHS--RQYAKRQ 280 (340)
T ss_dssp --HHHHHH----HHHHTTC------------T-TSSGGGSTTTTTHHHHHH----TSSCHHHHHHHHHHHH--HHHHHHH
T ss_pred --HHHHHH----HHHHcCC------------C-cchhhhhccHHHHHHHHc----CCCCHHHHHHHHHHHH--HHHHHHH
Confidence 999999 6665431 1 357999999999999997 9999999998888632 2245566
Q ss_pred cccc
Q psy10922 312 HRFT 315 (362)
Q Consensus 312 ~~~~ 315 (362)
..|.
T Consensus 281 ~TWf 284 (340)
T 3d3q_A 281 LTWF 284 (340)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4443
No 6
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=99.93 E-value=8.9e-29 Score=242.85 Aligned_cols=236 Identities=17% Similarity=0.229 Sum_probs=155.5
Q ss_pred cchhHHHHHHHHHHhCCCcchhhhhhhhhcCCCCCCCCCCCCceEEEEEecCCCcccc-ccccccccccccccc--cchh
Q psy10922 26 ARCISSPALQVFYEHGRSIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQCDKDKMRP-WRESNMWPSAYKTDA--LPTK 102 (362)
Q Consensus 26 ~~i~s~RSLQIYr~tGigtSki~~eQ~~~~~~~~~~~~lR~ph~LI~WL~~drdvLdp-RlVdsMv~~~~~~~a--~~~~ 102 (362)
.+|+++||+|||++|+|+|+|+..+++. + +|||++ ++.++ ...++.. +|.+.| ++.+
T Consensus 66 ~eiIs~Ds~qvYr~mdIgTakp~~eE~~--g---------vphhli-------di~~~~~e~~s~~--~F~~~a~~~i~~ 125 (339)
T 3a8t_A 66 LEVINSDKMQVYKGLDITTNKISVPDRG--G---------VPHHLL-------GEVDPARGELTPA--DFRSLAGKAVSE 125 (339)
T ss_dssp EEEEECCSSTTBSSCTTTTTCCCSGGGT--T---------CCEESS-------SCBCGGGCCCCHH--HHHHHHHHHHHH
T ss_pred CcEEcccccccccceeeecCCCCHHHHc--C---------CCEeec-------cccCcccCccCHH--HHHHHHHHHHHH
Confidence 5899999999999999999999988875 2 789999 68999 7788885 899977 5999
Q ss_pred HHhhCCcEEEEecCCCCCCCHHHHHhhhhh-ccchhhhccccchhhhhHHHHHHHhhCCChhhhhHHhhhhcCCCCCCCC
Q psy10922 103 ITRLNGLLIYIGSSGTFELSPDIRHTYVTN-CSGRVRSLTISTFLVSSRALQVFYEHGRSIHDILTEQKSLEGGSLLGGP 181 (362)
Q Consensus 103 i~~rgGLpiEVGGTGLYevd~~iR~~ll~~-~~g~lQaIg~nD~~RiiRALeV~~~tG~~~S~~l~~qk~~~~~~~~~~~ 181 (362)
|.++|++|+.|||||+|.. .+...+... ..+...+- +|| +++ ..
T Consensus 126 i~~~g~~pIlvGGtglYi~--all~g~~~p~~~d~~~a~-~~~----------------~~~----------------~~ 170 (339)
T 3a8t_A 126 ITGRRKLPVLVGGSNSFIH--ALLVDRFDSSGPGVFEEG-SHS----------------VVS----------------SE 170 (339)
T ss_dssp HHHTTCEEEEECCCHHHHH--HHHBSSCCTTCC----------------------------------------------C
T ss_pred HHhcCCeEEEEcCHHHHHH--HHHhCCCCCcccChhhhc-ccC----------------ccc----------------cc
Confidence 9999999999999999931 111100000 00000000 111 111 12
Q ss_pred CCCccceEEEEeCCCCCCCCCCCCCchHHHHHHHHHHHHhcccCCCccCCccchhhHHhhHhhhhhhhccCccccccccc
Q psy10922 182 LRFPNTVILWLQCDKEVPAPLNFHQISDIRILQVMSSMLTGIAGTFFSGTFELSPDIRHTFGTFGSQFGARHTYTVISRD 261 (362)
Q Consensus 182 ~ry~~~~iiwL~~dre~L~~l~~~~~~~~RI~~Rvd~Mle~~~G~~~~~~~~l~~Ev~~~~~~l~~~~~~~~~~~~~~~~ 261 (362)
.+| +.++|||.+++++| ++||++|++.|+++ | |++||+ .|++++. .. ...+
T Consensus 171 ~~~-~~~~i~L~~~re~L---------~~RI~~R~~~Ml~~--G--------l~eEv~----~L~~~~~-~~----~~~~ 221 (339)
T 3a8t_A 171 LRY-DCCFLWVDVSVKVL---------TDYLAKRVDDMLEL--G--------MFDELA----EFYSPED-ED----HDED 221 (339)
T ss_dssp BSS-EEEEEEEECCHHHH---------HHHHHHHHHHHHHH--T--------HHHHHH----HHCCTTC-SC----TTSC
T ss_pred ccc-CeEEEEEeCCHHHH---------HHHHHhhccHhhhc--c--------HHHHHH----HHHHhcC-cc----cccc
Confidence 345 67899999999999 99999999999999 9 999999 6665431 00 0012
Q ss_pred cccccCcceeechHHHHHHHHHHhh------CccChHHHHHHHHhhhcCCCCcccc--ccccccccCC----------cc
Q psy10922 262 AAFYVGIRQTNNIQPTHRSVRMIYA------NLCCVHTSSTAVNRCRLKPSTLPRQ--HRFTSSIDGR----------RT 323 (362)
Q Consensus 262 ~~~~~g~~qaIGykE~~~yl~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~----------~~ 323 (362)
.+++.|+||||||||+++||+-.+. +.++.++....++.|.++.+..||| +||..|+++. +.
T Consensus 222 ~~~~~~~~~aIGykE~~~yl~g~~~~~~~~~~~~~~~~~~~~l~eaie~ik~~TR~yAKRQ~tWfr~~~~~~w~i~~lDa 301 (339)
T 3a8t_A 222 SATRTGLRKAIGVPEFDRYFEKFRPGDVEGEDPGRDRVRRGAFEEAVRAIKENTCHLAKRQIGKILRLKGAGWDLRRLDA 301 (339)
T ss_dssp GGGSCGGGGSTTHHHHHHHHHHSCTTCCCCSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEEC
T ss_pred chhccHHHHHhhHHHHHHHHcCcccccccccccccchhhhcCHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeecc
Confidence 3456899999999999999983110 1122222233344444444445555 4555555432 33
Q ss_pred ccc--------------ccc-ceeccccccchhhhhhHHHH
Q psy10922 324 SDL--------------ALT-RQVCKPTRLAIIKISHRLYK 349 (362)
Q Consensus 324 ~~~--------------~~~-~~~~~~~~~~~~~~~~~~~~ 349 (362)
+|+ ..| +.|-.| .++|-..|+.
T Consensus 302 t~~~~~~~~~~~~~~~~~~W~~~V~~p----a~~iv~~fl~ 338 (339)
T 3a8t_A 302 TESFRAAMTSDSGEKCTEIWEKQVLEP----SVKIVSRFLD 338 (339)
T ss_dssp HHHHHHHHSTTTTHHHHHHHHHHTHHH----HHHHHHHHHH
T ss_pred ccchhhhhhccccchhhHHHHHHHHHH----HHHHHHHHhh
Confidence 444 244 666777 7777777664
No 7
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=98.65 E-value=7.4e-09 Score=101.18 Aligned_cols=91 Identities=13% Similarity=0.136 Sum_probs=66.5
Q ss_pred chhHHHHHHHHHHhCCCcchhhhhhhhhcCCCCCCCCCCCCceEEEEEecCCCcccccc---ccccccccccccccchhH
Q psy10922 27 RCISSPALQVFYEHGRSIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQCDKDKMRPWR---ESNMWPSAYKTDALPTKI 103 (362)
Q Consensus 27 ~i~s~RSLQIYr~tGigtSki~~eQ~~~~~~~~~~~~lR~ph~LI~WL~~drdvLdpRl---VdsMv~~~~~~~a~~~~i 103 (362)
...+.||||||+.||++.|.+..++.. .++++ +.+++||++++++|++|+ |+.|+
T Consensus 159 ~~Ri~RALEV~~~TG~~~S~~~~~~~~--------~~~~~-~~~~i~L~~~R~~L~~RI~~Rvd~Ml------------- 216 (322)
T 3exa_A 159 YRRVIRALEIIKLTGKTVTEQARHEEE--------TPSPY-NLVMIGLTMERDVLYDRINRRVDQMV------------- 216 (322)
T ss_dssp HHHHHHHHHHHHHTC----------------------CCS-EEEEEEEECCHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHhhhccC--------CCCCC-ceEEEEEeCCHHHHHHHHHHHHHHHH-------------
Confidence 357899999999999999987654431 12345 589999999999999999 99999
Q ss_pred HhhCCcEEEEecCCCCCCCHHHHHhhhhhccchhhhccccchhhhhHH
Q psy10922 104 TRLNGLLIYIGSSGTFELSPDIRHTYVTNCSGRVRSLTISTFLVSSRA 151 (362)
Q Consensus 104 ~~rgGLpiEVGGTGLYevd~~iR~~ll~~~~g~lQaIg~nD~~RiiRA 151 (362)
+.|++.|| ..+.+.. .....++++|||+++..+++.
T Consensus 217 --~~Gl~eEv---------~~L~~~~-~~~~~a~~aIGYkE~~~yL~G 252 (322)
T 3exa_A 217 --EEGLIDEA---------KKLYDRG-IRDCQSVQAIGYKEMYDYLDG 252 (322)
T ss_dssp --HHTHHHHH---------HHHHHTT-CCSSTGGGSTTTHHHHHHHHT
T ss_pred --HCCHHHHH---------HHHHhcC-CCcCccceeeeHHHHHHHHCC
Confidence 89999999 7777765 446689999999999888764
No 8
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=98.57 E-value=9.2e-09 Score=103.34 Aligned_cols=91 Identities=23% Similarity=0.369 Sum_probs=74.5
Q ss_pred chhHHHHHHHHHHhCCCcchhhhhhhhhcCCCCCCCCCCCCceEEEEEecCCCcccccc---ccccccccccccccchhH
Q psy10922 27 RCISSPALQVFYEHGRSIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQCDKDKMRPWR---ESNMWPSAYKTDALPTKI 103 (362)
Q Consensus 27 ~i~s~RSLQIYr~tGigtSki~~eQ~~~~~~~~~~~~lR~ph~LI~WL~~drdvLdpRl---VdsMv~~~~~~~a~~~~i 103 (362)
...+.||||||+.||++.|.+..++.. +++| +.+++||++++++|+.|+ |+.|+
T Consensus 157 ~~Ri~RALEV~~~TG~~~S~~~~~~~~---------~~~~-~~~~i~L~~~R~~L~~RI~~Rvd~Ml------------- 213 (409)
T 3eph_A 157 YRRVQRMLEIYYKTGKKPSETFNEQKI---------TLKF-DTLFLWLYSKPEPLFQRLDDRVDDML------------- 213 (409)
T ss_dssp HHHHHHHHHHHHHHCSCHHHHHHTCCC---------CCSS-EEEEEEEECCHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHhhccC---------CCCc-ceEEEEEeCCHHHHHHHHHHHHHHHH-------------
Confidence 457899999999999999997654431 3456 689999999999999999 99999
Q ss_pred HhhCCcEEEEecCCCCCCCHHHHHhhhhh-------ccchhhhccccchhhhhHH
Q psy10922 104 TRLNGLLIYIGSSGTFELSPDIRHTYVTN-------CSGRVRSLTISTFLVSSRA 151 (362)
Q Consensus 104 ~~rgGLpiEVGGTGLYevd~~iR~~ll~~-------~~g~lQaIg~nD~~RiiRA 151 (362)
+.||+.|| ..+.+.+... ..+++++|||+++..+++.
T Consensus 214 --~~GlleEv---------~~L~~~~~~~~~~~~~~~~~~~~aIGYkE~~~yL~g 257 (409)
T 3eph_A 214 --ERGALQEI---------KQLYEYYSQNKFTPEQCENGVWQVIGFKEFLPWLTG 257 (409)
T ss_dssp --HTTHHHHH---------HHHHHHHTTTTCCGGGTTSGGGGSTTTGGGGGGGC-
T ss_pred --HCcHHHHH---------HHHHHhccccccccccccccchhcccHHHHHHHHcC
Confidence 99999999 7777653211 2578999999999999876
No 9
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=98.41 E-value=4.4e-08 Score=96.13 Aligned_cols=90 Identities=9% Similarity=0.124 Sum_probs=73.1
Q ss_pred chhHHHHHHHHHHhCCCcchhhhhhhhhcCCCCCCCCCCCCceEEEEEecCCCcccccc---ccccccccccccccchhH
Q psy10922 27 RCISSPALQVFYEHGRSIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQCDKDKMRPWR---ESNMWPSAYKTDALPTKI 103 (362)
Q Consensus 27 ~i~s~RSLQIYr~tGigtSki~~eQ~~~~~~~~~~~~lR~ph~LI~WL~~drdvLdpRl---VdsMv~~~~~~~a~~~~i 103 (362)
...+.||||||+.||++.|.+..++.. +++| ..+++||++++++|++|+ |+.|+
T Consensus 166 ~~Ri~RALEv~~~tG~~~s~~~~~~~~---------~~~~-~~~~~~L~~~r~~L~~RI~~Rvd~M~------------- 222 (340)
T 3d3q_A 166 RKRVLRAIEYYLKTKKLLSSRKKVQQF---------TENY-DTLLIGIEMSRETLYLRINKRVDIML------------- 222 (340)
T ss_dssp HHHHHHHHHHHHHHCSCSHHHHHHHHH---------SBCS-EEEEEEEECCHHHHHHHHHHHHHHHH-------------
T ss_pred chhhhhHHHHHHHhCCChHHHhhhccC---------CCCC-ceEEEEeCCCHHHHHHHHHHHHHHHH-------------
Confidence 457899999999999999986443332 1125 589999999999999999 99999
Q ss_pred HhhCCcEEEEecCCCCCCCHHHHHhhhhhccchhhhccccchhhhhHH
Q psy10922 104 TRLNGLLIYIGSSGTFELSPDIRHTYVTNCSGRVRSLTISTFLVSSRA 151 (362)
Q Consensus 104 ~~rgGLpiEVGGTGLYevd~~iR~~ll~~~~g~lQaIg~nD~~RiiRA 151 (362)
+.|++.|| ..+.+.... ..+++++|||+++..+++.
T Consensus 223 --~~Gl~~Ev---------~~L~~~~~~-~~~~~~aIGyke~~~yl~g 258 (340)
T 3d3q_A 223 --GHGLFNEV---------QHLVEQGFE-ASQSMQAIGYKELVPVIKG 258 (340)
T ss_dssp --HHTHHHHH---------HHHHHTTCT-TSSGGGSTTTTTHHHHHHT
T ss_pred --HCCHHHHH---------HHHHHcCCC-cchhhhhccHHHHHHHHcC
Confidence 89999999 777765433 5689999999999888763
No 10
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=98.39 E-value=2.9e-08 Score=96.79 Aligned_cols=91 Identities=11% Similarity=0.131 Sum_probs=73.4
Q ss_pred chhHHHHHHHHHHhCCCcchhhhhhhhhcCCCCCCCCCCCCceEEEEEec-CCCcccccc---ccccccccccccccchh
Q psy10922 27 RCISSPALQVFYEHGRSIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQC-DKDKMRPWR---ESNMWPSAYKTDALPTK 102 (362)
Q Consensus 27 ~i~s~RSLQIYr~tGigtSki~~eQ~~~~~~~~~~~~lR~ph~LI~WL~~-drdvLdpRl---VdsMv~~~~~~~a~~~~ 102 (362)
...+.||||||+.||++.|.+..++. .++++ +.+++||++ ++++|++|+ |+.|+
T Consensus 165 ~~Ri~RALEV~~~TG~~~S~~~~~~~---------~~~~~-~~~~i~L~~~~R~~L~~RI~~Rvd~Ml------------ 222 (316)
T 3foz_A 165 PQRLSRALEVFFISGKTLTELTQTSG---------DALPY-QVHQFAIAPASRELLHQRIEQRFHQML------------ 222 (316)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHTSCC---------CCCSS-EEEEEEEECSSHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHhhccC---------CCCCC-ceEEEEecCCCHHHHHHHHHHHHHHHH------------
Confidence 35789999999999999988653221 22345 588999999 999999999 99999
Q ss_pred HHhhCCcEEEEecCCCCCCCHHHHHhh-hhhccchhhhccccchhhhhHH
Q psy10922 103 ITRLNGLLIYIGSSGTFELSPDIRHTY-VTNCSGRVRSLTISTFLVSSRA 151 (362)
Q Consensus 103 i~~rgGLpiEVGGTGLYevd~~iR~~l-l~~~~g~lQaIg~nD~~RiiRA 151 (362)
+.|++.|| ..+.++. +......+++|||+++..+++.
T Consensus 223 ---~~Gl~eEv---------~~L~~~~~~~~~~~~~~aIGYkE~~~yL~G 260 (316)
T 3foz_A 223 ---ASGFEAEV---------RALFARGDLHTDLPSIRCVGYRQMWSYLEG 260 (316)
T ss_dssp ---HTTHHHHH---------HHHHHHSCCCTTSTTTTSTTHHHHHHHHHT
T ss_pred ---HCCHHHHH---------HHHHHccCCCccCccceeeehhhHHHHhcC
Confidence 99999999 7777764 3445688999999998887663
No 11
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.20 E-value=7.1e-08 Score=94.05 Aligned_cols=100 Identities=12% Similarity=0.097 Sum_probs=50.7
Q ss_pred chhHHHHHHHHHHhCCCcchhhhhhhhhcCC--CCCCCCCCCCceEEEEEecC-CCcccccc---ccccccccccccccc
Q psy10922 27 RCISSPALQVFYEHGRSIHDILTEQKSLEGG--SLLGGPLRFPNTVILWLQCD-KDKMRPWR---ESNMWPSAYKTDALP 100 (362)
Q Consensus 27 ~i~s~RSLQIYr~tGigtSki~~eQ~~~~~~--~~~~~~lR~ph~LI~WL~~d-rdvLdpRl---VdsMv~~~~~~~a~~ 100 (362)
...+.||||||+.||++.|.+..++...... .+...+++| +.+++||+++ +++|+.|+ |+.|+
T Consensus 160 ~~Ri~RALEv~~~tG~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~~~r~~L~~RI~~Rvd~M~---------- 228 (323)
T 3crm_A 160 PQRLMRALEVYRLGGVSMSDLRRRQSAEKADFDASGRNQLPY-TVAQLAIAPEQRQVLHARIAQRFRQML---------- 228 (323)
T ss_dssp ----------------------------------------CS-EEEEEEEECSSHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHhhccccccccccccccCCCC-ceEEEEEcCCCHHHHHHHHHHHHHHHH----------
Confidence 4578999999999999999865443210000 000112335 5789999996 99999999 99999
Q ss_pred hhHHhhCCcEEEEecCCCCCCCHHHHHhh-hhhccchhhhccccchhhhhHH
Q psy10922 101 TKITRLNGLLIYIGSSGTFELSPDIRHTY-VTNCSGRVRSLTISTFLVSSRA 151 (362)
Q Consensus 101 ~~i~~rgGLpiEVGGTGLYevd~~iR~~l-l~~~~g~lQaIg~nD~~RiiRA 151 (362)
+.|++.|| ..+.+.. +.....++++|||+++..+++.
T Consensus 229 -----~~Gl~~Ev---------~~L~~~~~~~~~~~~~~aIGyke~~~yl~g 266 (323)
T 3crm_A 229 -----EQGFIAEV---------EALHARSDLHAGLPSIRAVGYRQVWDYLDG 266 (323)
T ss_dssp -----HTTHHHHH---------HHHHTCTTCCTTSSGGGSTTHHHHHHHHTT
T ss_pred -----HCCHHHHH---------HHHHhcCCCCCCCcchheecHHHHHHHHcC
Confidence 89999999 6666542 2335678999999999888763
No 12
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.04 E-value=5.4e-07 Score=83.23 Aligned_cols=196 Identities=10% Similarity=-0.054 Sum_probs=109.9
Q ss_pred cchhHHHHHHHHHHhCCCcchhhhhhhhhcCCCCCCCCCCCCceEEEEEecCCCcccccc-ccccccccccccc--cchh
Q psy10922 26 ARCISSPALQVFYEHGRSIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQCDKDKMRPWR-ESNMWPSAYKTDA--LPTK 102 (362)
Q Consensus 26 ~~i~s~RSLQIYr~tGigtSki~~eQ~~~~~~~~~~~~lR~ph~LI~WL~~drdvLdpRl-VdsMv~~~~~~~a--~~~~ 102 (362)
+++++.|++++|+++++++.++..++.. + ++|+++ +..++.. ..+. ..|.+.+ .+ +
T Consensus 27 ~~~i~~D~~~~~~~~~~~t~~~~~~e~~--~---------~~~~~~-------~~~~~~~~~~~~--~~f~~~~~~~i-~ 85 (253)
T 2ze6_A 27 WPVVALDRVQCCPQIATGSGRPLESELQ--S---------TRRIYL-------DSRPLTEGILDA--ESAHRRLIFEV-D 85 (253)
T ss_dssp CCEEECCSGGGCGGGTTTTTCCCGGGGT--T---------CCEECS-------CCCCGGGCSCCH--HHHHHHHHHHH-H
T ss_pred CeEEeccHHhccCCCccccCCCCHHHHh--C---------CCeEEE-------eeeccccccccH--HHHHHHHHHHH-H
Confidence 4678889999999999999888766653 1 566666 3444433 2333 2555544 25 6
Q ss_pred HHhhCCcEEEEecCCCCCCCHHHHHhhhhhccchhhhccccchhhhhHHHHHHHhhCCChhhhhHHhhhhcCCCCCCCCC
Q psy10922 103 ITRLNGLLIYIGSSGTFELSPDIRHTYVTNCSGRVRSLTISTFLVSSRALQVFYEHGRSIHDILTEQKSLEGGSLLGGPL 182 (362)
Q Consensus 103 i~~rgGLpiEVGGTGLYevd~~iR~~ll~~~~g~lQaIg~nD~~RiiRALeV~~~tG~~~S~~l~~qk~~~~~~~~~~~~ 182 (362)
+.++|+.++++||++.| ...+... . .| ..
T Consensus 86 ~~~~g~~vIl~gg~~~~------~~~~~~~---------------------------~---~~---------------~~ 114 (253)
T 2ze6_A 86 WRKSEEGLILEGGSISL------LNCMAKS---------------------------P---FW---------------RS 114 (253)
T ss_dssp TTTTSSEEEEEECCHHH------HHHHHHC---------------------------T---TT---------------TS
T ss_pred HHhCCCCeEEeccHHHH------HHHHHhc---------------------------c---cc---------------cc
Confidence 77788999999997532 1111100 0 00 01
Q ss_pred CCccceEEEEeCCC-CCCCCCCCCCchHHHHHHHHHHHHhcccCCCccCCccchhhHHhhHhhhhhhhccCccccccccc
Q psy10922 183 RFPNTVILWLQCDK-EVPAPLNFHQISDIRILQVMSSMLTGIAGTFFSGTFELSPDIRHTFGTFGSQFGARHTYTVISRD 261 (362)
Q Consensus 183 ry~~~~iiwL~~dr-e~L~~l~~~~~~~~RI~~Rvd~Mle~~~G~~~~~~~~l~~Ev~~~~~~l~~~~~~~~~~~~~~~~ 261 (362)
.+ +.+++||.++. +++ .+|+.+|.++|+.. - ..+.++++|+.. +.+.
T Consensus 115 ~~-~~~~i~l~~~~~e~l---------~~Rl~~R~~~ml~~--~---~~~~~~l~e~~~----~~~~------------- 162 (253)
T 2ze6_A 115 GF-QWHVKRLRLGDSDAF---------LTRAKQRVAEMFAI--R---EDRPSLLEELAE----LWNY------------- 162 (253)
T ss_dssp SC-EEEEEECCCCCHHHH---------HHHHHHHHHHHHCC--C---SSSCCHHHHHHH----HHTS-------------
T ss_pred cC-ceEEEEecchhHHHH---------HHHHHHHHHHHHhc--C---cccchHHHHHHH----hcCC-------------
Confidence 12 34789999986 999 99999999999765 1 122247788873 3321
Q ss_pred cccccCcceeechHHHHHHHHHHh--hCcc------ChHHHHHHHHhhhcCCCCccccc-cccccccCCcccccc
Q psy10922 262 AAFYVGIRQTNNIQPTHRSVRMIY--ANLC------CVHTSSTAVNRCRLKPSTLPRQH-RFTSSIDGRRTSDLA 327 (362)
Q Consensus 262 ~~~~~g~~qaIGykE~~~yl~~~~--~~~~------~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 327 (362)
++...++.+.+||+|+++|+.... .++. ..++.+++|+.. ....+.||. .+.+|..|...+.+|
T Consensus 163 p~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~i~~~--~~~~a~~q~~~~~~w~~~~~~~~~~ 235 (253)
T 2ze6_A 163 PAARPILEDIDGYRCAIRFARKHDLAISQLPNIDAGRHVELIEAIANE--YLEHALSQERDFPQWPEDGAGQPVC 235 (253)
T ss_dssp TTHHHHHTTSTTHHHHHHHHHHHTCCGGGGGGCCTTHHHHHHHHHHHH--HHHHHHHHHHHSCCCCC--------
T ss_pred cchHHHHHHHhhHHHHHHHHHhcCCCcchhhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCccCCCC
Confidence 011124556799999999996321 0111 123333333321 112344663 456788887766665
No 13
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.14 E-value=0.0046 Score=60.66 Aligned_cols=60 Identities=10% Similarity=0.197 Sum_probs=48.4
Q ss_pred ceEEEEEecCCCcccccc---ccccccccccccccchhHHhhCCcEEEEecCCCCCCCHHHHHhhhh-------hccchh
Q psy10922 68 NTVILWLQCDKDKMRPWR---ESNMWPSAYKTDALPTKITRLNGLLIYIGSSGTFELSPDIRHTYVT-------NCSGRV 137 (362)
Q Consensus 68 h~LI~WL~~drdvLdpRl---VdsMv~~~~~~~a~~~~i~~rgGLpiEVGGTGLYevd~~iR~~ll~-------~~~g~l 137 (362)
+.+++||++++++|..|+ ++.|+ +.|++.|| ..+.+.... ...+++
T Consensus 174 ~~~~i~L~~~re~L~~RI~~R~~~Ml---------------~~Gl~eEv---------~~L~~~~~~~~~~~~~~~~~~~ 229 (339)
T 3a8t_A 174 DCCFLWVDVSVKVLTDYLAKRVDDML---------------ELGMFDEL---------AEFYSPEDEDHDEDSATRTGLR 229 (339)
T ss_dssp EEEEEEEECCHHHHHHHHHHHHHHHH---------------HHTHHHHH---------HHHCCTTCSCTTSCGGGSCGGG
T ss_pred CeEEEEEeCCHHHHHHHHHhhccHhh---------------hccHHHHH---------HHHHHhcCccccccchhccHHH
Confidence 578999999999999999 89998 77888888 444433211 127899
Q ss_pred hhccccchhhhhHH
Q psy10922 138 RSLTISTFLVSSRA 151 (362)
Q Consensus 138 QaIg~nD~~RiiRA 151 (362)
|+|||+++..+++.
T Consensus 230 ~aIGykE~~~yl~g 243 (339)
T 3a8t_A 230 KAIGVPEFDRYFEK 243 (339)
T ss_dssp GSTTHHHHHHHHHH
T ss_pred HHhhHHHHHHHHcC
Confidence 99999999998876
No 14
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=46.93 E-value=0.35 Score=44.42 Aligned_cols=49 Identities=10% Similarity=0.084 Sum_probs=38.0
Q ss_pred ccchhHHHHHHHHHHhC---CCcchhhhhhhhhcCCCCCCCCCCCCceE----EEEEecCCCcccccccccccccccccc
Q psy10922 25 LARCISSPALQVFYEHG---RSIHDILTEQKSLEGGSLLGGPLRFPNTV----ILWLQCDKDKMRPWRESNMWPSAYKTD 97 (362)
Q Consensus 25 ~~~i~s~RSLQIYr~tG---igtSki~~eQ~~~~~~~~~~~~lR~ph~L----I~WL~~drdvLdpRlVdsMv~~~~~~~ 97 (362)
..++++.||+|||+.++ +|++++. +||++ + +++++...+++. +|+.+
T Consensus 58 g~~iIsdDs~~v~~~~~~~liGtak~~-----------------i~h~lEiRGi-------giid~~~~f~~~--~f~~~ 111 (205)
T 2qmh_A 58 GHRLIADDRVDVYQQDEQTIVGAAPPI-----------------LSHLLEIRGL-------GIIDVMNLFGAG--AVRED 111 (205)
T ss_dssp TCEEEESSEEEEEECSTTCEEEECCSS-----------------STTEEEETTT-------EEEEHHHHHCTT--SBCSC
T ss_pred CCeEEecchhheeecCCceEEEECCcc-----------------ccccccccce-------eEEcccccCCHH--HHHhc
Confidence 34899999999999999 8888732 57888 6 478888877775 67666
Q ss_pred cc
Q psy10922 98 AL 99 (362)
Q Consensus 98 a~ 99 (362)
+.
T Consensus 112 a~ 113 (205)
T 2qmh_A 112 TT 113 (205)
T ss_dssp CB
T ss_pred Cc
Confidence 63
Done!