Query psy10922
Match_columns 362
No_of_seqs 249 out of 969
Neff 4.7
Searched_HMMs 13730
Date Fri Aug 16 21:57:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10922.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10922hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1y63a_ c.37.1.1 (A:) Probable 10.1 30 0.0022 25.9 0.1 20 187-215 97-116 (174)
2 d1vp7a_ a.7.13.1 (A:) Exonucle 9.7 1.4E+02 0.01 20.6 3.8 28 274-301 12-39 (68)
3 d1phza1 d.58.18.3 (A:19-115) P 7.6 1.4E+02 0.01 21.7 3.2 59 143-222 25-83 (97)
4 d2bkaa1 c.2.1.2 (A:5-236) TAT- 6.9 54 0.004 26.4 0.4 14 106-119 13-26 (232)
5 d1ri5a_ c.66.1.34 (A:) mRNA ca 6.7 57 0.0042 26.6 0.5 26 94-119 12-38 (252)
6 d1knqa_ c.37.1.17 (A:) Glucona 6.0 48 0.0035 24.6 -0.4 21 186-215 102-122 (171)
7 d2qmwa2 d.58.18.3 (A:185-264) 5.7 2.3E+02 0.017 19.5 3.4 39 147-196 15-53 (80)
8 d1qama_ c.66.1.24 (A:) rRNA ad 5.6 1.1E+02 0.008 25.4 1.7 24 106-129 21-59 (235)
9 d2b3ta1 c.66.1.30 (A:2-275) N5 5.3 83 0.006 27.1 0.7 40 74-119 81-122 (274)
10 d2bwba1 a.5.2.1 (A:328-371) DS 5.2 1.4E+02 0.01 19.1 1.7 19 135-153 10-28 (44)
No 1
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}
Probab=10.13 E-value=30 Score=25.88 Aligned_cols=20 Identities=20% Similarity=0.203 Sum_probs=17.5
Q ss_pred ceEEEEeCCCCCCCCCCCCCchHHHHHHH
Q psy10922 187 TVILWLQCDKEVPAPLNFHQISDIRILQV 215 (362)
Q Consensus 187 ~~iiwL~~dre~L~~l~~~~~~~~RI~~R 215 (362)
..++||+|+.+.| .+|+.+|
T Consensus 97 ~~vI~L~~~~e~l---------~~Rl~~R 116 (174)
T d1y63a_ 97 HMVVVLHTSTEVL---------FERLTKR 116 (174)
T ss_dssp SEEEEEECCHHHH---------HHHHHHT
T ss_pred ceEEEEECCHHHH---------HHHHHhC
Confidence 3678999999999 9999887
No 2
>d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB {Bordetella pertussis [TaxId: 520]}
Probab=9.73 E-value=1.4e+02 Score=20.56 Aligned_cols=28 Identities=14% Similarity=0.044 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHhhCccChHHHHHHHHhh
Q psy10922 274 IQPTHRSVRMIYANLCCVHTSSTAVNRC 301 (362)
Q Consensus 274 ykE~~~yl~~~~~~~~~~~~~~~~i~~~ 301 (362)
++++-.-++.++.|..++++|++..+++
T Consensus 12 l~~LE~IV~~LE~g~l~Leesl~~ye~G 39 (68)
T d1vp7a_ 12 LAELESLVSAMENGTLPLEQSLSAYRRG 39 (68)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 4566666777778888888877765553
No 3
>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=7.57 E-value=1.4e+02 Score=21.68 Aligned_cols=59 Identities=12% Similarity=0.136 Sum_probs=36.7
Q ss_pred cchhhhhHHHHHHHhhCCChhhhhHHhhhhcCCCCCCCCCCCccceEEEEeCCCCCCCCCCCCCchHHHHHHHHHHHHhc
Q psy10922 143 STFLVSSRALQVFYEHGRSIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQCDKEVPAPLNFHQISDIRILQVMSSMLTG 222 (362)
Q Consensus 143 nD~~RiiRALeV~~~tG~~~S~~l~~qk~~~~~~~~~~~~ry~~~~iiwL~~dre~L~~l~~~~~~~~RI~~Rvd~Mle~ 222 (362)
++.=.+..+|.+|...|..++.|..+.. ...+-.| .|+++++-. - ++.+..-++.+-..
T Consensus 25 ~~pGaL~~vL~~f~~~~INLt~IeSRP~-------~~~~~~Y----~F~id~eg~-~---------~~~i~~~l~~L~~~ 83 (97)
T d1phza1 25 EEVGALAKVLRLFEENDINLTHIESRPS-------RLNKDEY----EFFTYLDKR-T---------KPVLGSIIKSLRND 83 (97)
T ss_dssp CCTTHHHHHHHHHHTTTCCTTSEEEEEC-------SSCTTEE----EEEECBCGG-G---------HHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHCCCCEEEEEeecc-------CCCCceE----EEEEEcccC-C---------hHHHHHHHHHHHHh
Confidence 3444567889999999999998743321 1223344 578888643 3 55566655555444
No 4
>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.85 E-value=54 Score=26.36 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=12.4
Q ss_pred hCCcEEEEecCCCC
Q psy10922 106 LNGLLIYIGSSGTF 119 (362)
Q Consensus 106 rgGLpiEVGGTGLY 119 (362)
+++-++++||||+-
T Consensus 13 ~~k~IlItGaTG~i 26 (232)
T d2bkaa1 13 QNKSVFILGASGET 26 (232)
T ss_dssp TCCEEEEECTTSHH
T ss_pred CCCEEEEECCCcHH
Confidence 67789999999987
No 5
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}
Probab=6.73 E-value=57 Score=26.64 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=20.3
Q ss_pred ccccccchhHHhhCCcEEEEe-cCCCC
Q psy10922 94 YKTDALPTKITRLNGLLIYIG-SSGTF 119 (362)
Q Consensus 94 ~~~~a~~~~i~~rgGLpiEVG-GTGLY 119 (362)
|.+..+|++...+++-+.++| |||-+
T Consensus 12 ~vK~~lI~~~~~~~~~VLDlGCG~G~~ 38 (252)
T d1ri5a_ 12 FIKACLIRLYTKRGDSVLDLGCGKGGD 38 (252)
T ss_dssp HHHHHHHHHHCCTTCEEEEETCTTTTT
T ss_pred HHHHHHHHHhCCCcCEEEEecccCcHH
Confidence 445567777778888899999 99965
No 6
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}
Probab=5.97 E-value=48 Score=24.58 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=18.0
Q ss_pred cceEEEEeCCCCCCCCCCCCCchHHHHHHH
Q psy10922 186 NTVILWLQCDKEVPAPLNFHQISDIRILQV 215 (362)
Q Consensus 186 ~~~iiwL~~dre~L~~l~~~~~~~~RI~~R 215 (362)
+..++||+++.+++ .+|+.+|
T Consensus 102 ~~~~v~l~~~~e~~---------~~Rl~~R 122 (171)
T d1knqa_ 102 NLSFIYLKGDFDVI---------ESRLKAR 122 (171)
T ss_dssp TEEEEEEECCHHHH---------HHHHHTS
T ss_pred CceEEeecCCHHHH---------HHHHHhC
Confidence 34788999999999 8999888
No 7
>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=5.70 E-value=2.3e+02 Score=19.50 Aligned_cols=39 Identities=13% Similarity=0.087 Sum_probs=26.7
Q ss_pred hhhHHHHHHHhhCCChhhhhHHhhhhcCCCCCCCCCCCccceEEEEeCCC
Q psy10922 147 VSSRALQVFYEHGRSIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQCDK 196 (362)
Q Consensus 147 RiiRALeV~~~tG~~~S~~l~~qk~~~~~~~~~~~~ry~~~~iiwL~~dr 196 (362)
-+.++|++|...|..++.+..+.. ++.+-.| .|.++++-
T Consensus 15 aL~~vL~~F~~~~INLt~IeSRP~-------~~~~~~Y----~F~id~~g 53 (80)
T d2qmwa2 15 LLASVLNTFALFNINLSWIESRPL-------KTQLGMY----RFFVQADS 53 (80)
T ss_dssp HHHHHHHHHHTTTCCEEEEEEEEC-------SSSTTCE----EEEEEESC
T ss_pred HHHHHHHHHHHCCCCEEEEEeeec-------CCCCceE----EEEEEEec
Confidence 456789999999999998744321 2234445 57788853
No 8
>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}
Probab=5.61 E-value=1.1e+02 Score=25.43 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=18.5
Q ss_pred hCCcEEEEe-cCCCC--------------CCCHHHHHhh
Q psy10922 106 LNGLLIYIG-SSGTF--------------ELSPDIRHTY 129 (362)
Q Consensus 106 rgGLpiEVG-GTGLY--------------evd~~iR~~l 129 (362)
.+..++||| |+|.. |.|+.+-+.+
T Consensus 21 ~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l 59 (235)
T d1qama_ 21 EHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTT 59 (235)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHH
T ss_pred CCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHH
Confidence 678899999 99966 5777665544
No 9
>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}
Probab=5.30 E-value=83 Score=27.08 Aligned_cols=40 Identities=10% Similarity=0.221 Sum_probs=22.8
Q ss_pred EecCCCcccccc-ccccccccccccccchhHHhhCCcEEEEe-cCCCC
Q psy10922 74 LQCDKDKMRPWR-ESNMWPSAYKTDALPTKITRLNGLLIYIG-SSGTF 119 (362)
Q Consensus 74 L~~drdvLdpRl-VdsMv~~~~~~~a~~~~i~~rgGLpiEVG-GTGLY 119 (362)
+.+++.||-||- ....+ +..++.+...+.-+..+| |||--
T Consensus 81 ~~v~~~VlIPRpeTE~lv------~~~l~~~~~~~~~vlDlGtGSG~I 122 (274)
T d2b3ta1 81 LFVSPATLIPRPDTECLV------EQALARLPEQPCRILDLGTGTGAI 122 (274)
T ss_dssp EECCTTSCCCCTTHHHHH------HHHHHHSCSSCCEEEEETCTTSHH
T ss_pred EEEeccccccccchhhhh------hhHhhhhcccccceeeeehhhhHH
Confidence 578999999998 22222 112233333444456665 87754
No 10
>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.21 E-value=1.4e+02 Score=19.14 Aligned_cols=19 Identities=16% Similarity=0.198 Sum_probs=16.3
Q ss_pred chhhhccccchhhhhHHHH
Q psy10922 135 GRVRSLTISTFLVSSRALQ 153 (362)
Q Consensus 135 g~lQaIg~nD~~RiiRALe 153 (362)
..++..|+.|..+.++||+
T Consensus 10 ~qL~~MGF~d~~~Ni~AL~ 28 (44)
T d2bwba1 10 RQLNDMGFFDFDRNVAALR 28 (44)
T ss_dssp HHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHcCCCcHHHHHHHHH
Confidence 4567899999999999994
Done!