RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10922
(362 letters)
>gnl|CDD|238791 cd01533, 4RHOD_Repeat_2, Member of the Rhodanese Homology Domain
superfamily, repeat 2. This CD includes putative
rhodanese-related sulfurtransferases which contain 4
copies of the Rhodanese Homology Domain. This CD aligns
the 2nd repeat which does contain the putative catalytic
Cys residue.
Length = 109
Score = 34.4 bits (79), Expect = 0.019
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 91 PSAYKTDALPTKITRLNGLLIY-IGSSGTFELSPDIRHTYVTNCSGRVRSL 140
Y+ +P ++ L+ +G EL+PD R V NC+GR RS+
Sbjct: 35 FDEYRKMTIPGSVSCPGAELVLRVG-----ELAPDPRTPIVVNCAGRTRSI 80
>gnl|CDD|216659 pfam01715, IPPT, IPP transferase. This is a family of IPP
transferases EC:2.5.1.8 also known as tRNA
delta(2)-isopentenylpyrophosphate transferase. These
enzymes modify both cytoplasmic and mitochondrial tRNAs
at A(37) to give isopentenyl A(37).
Length = 253
Score = 35.4 bits (82), Expect = 0.030
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 15/69 (21%)
Query: 150 RALQVFYEHGRSIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQCDKEVPAPLNFHQISD 209
RAL+VFY G+ I + EQK L + + V + L D+EV H+
Sbjct: 127 RALEVFYATGKPISEFQKEQK---------NALPY-DIVQIGLARDREV-----LHERIA 171
Query: 210 IRILQVMSS 218
R+ ++ S
Sbjct: 172 RRVDDMLES 180
Score = 29.2 bits (66), Expect = 2.9
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 13/63 (20%)
Query: 33 ALQVFYEHGRSIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQCDKDKMRP---WRESNM 89
AL+VFY G+ I + EQK L + + V + L D++ + R +M
Sbjct: 128 ALEVFYATGKPISEFQKEQK---------NALPY-DIVQIGLARDREVLHERIARRVDDM 177
Query: 90 WPS 92
S
Sbjct: 178 LES 180
>gnl|CDD|213512 TIGR00174, miaA, tRNA dimethylallyltransferase. Alternate names
include delta(2)-isopentenylpyrophosphate transferase,
IPP transferase, 2-methylthio-N6-isopentyladenosine tRNA
modification enzyme. Catalyzes the first step in the
modification of an adenosine near the anticodon to
2-methylthio-N6-isopentyladenosine. Understanding of
substrate specificity has changed [Protein synthesis,
tRNA and rRNA base modification].
Length = 287
Score = 33.1 bits (76), Expect = 0.20
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 15/72 (20%)
Query: 149 SRALQVFYEHGRSIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQCDKEVPAPLNFHQIS 208
RAL+VFY G+ ++ EQK F + V + L +E HQ
Sbjct: 158 QRALEVFYATGKPPSELFKEQK----------IELFYDIVQIGLASSREP-----LHQRI 202
Query: 209 DIRILQVMSSML 220
+ R+ ++ S L
Sbjct: 203 EQRVHDMLESGL 214
>gnl|CDD|223401 COG0324, MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase
[Translation, ribosomal structure and biogenesis].
Length = 308
Score = 29.9 bits (68), Expect = 2.0
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 18/72 (25%)
Query: 149 SRALQVFYEHGRSIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQCDKEVPAPLNFHQIS 208
RAL+V+Y G+ I ++ L + +I+ L D+EV
Sbjct: 162 IRALEVYYLTGKPISELQKRS---------RPILEPYDILIIALAADREVL--------- 203
Query: 209 DIRILQVMSSML 220
RI + + +ML
Sbjct: 204 YERINRRVDAML 215
>gnl|CDD|112953 pfam04163, Tht1, Tht1-like nuclear fusion protein.
Length = 554
Score = 29.7 bits (66), Expect = 2.6
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 161 SIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQCDKEVPAPLNFHQISDIRILQVMSSML 220
+ L+EQ++LE +L G F + L+ D+ +P ++F + + L + L
Sbjct: 356 GLKKDLSEQQNLEAEEILQGFNDFLHDSKDHLKTDEILPELIDFKE----KFLNEWFAGL 411
Query: 221 TGIAGTFFSGTFELSPDIRHTFGTFGSQF 249
+ I G F E+ F TF F
Sbjct: 412 SNIIGDFAFIGEEI-------FATFNDIF 433
>gnl|CDD|177260 MTH00223, COX1, cytochrome c oxidase subunit I; Provisional.
Length = 512
Score = 29.6 bits (67), Expect = 3.0
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 209 DIRILQVMSSMLTGIAGTFFSGTFELSPDIRHTFGTFGSQFGARHTYTVISRDAAF 264
DI L ++ M +G+ GT LS IR G G+ G Y VI AF
Sbjct: 11 DIGTLYLIFGMWSGLVGT------SLSLLIRAELGQPGALLGDDQLYNVIVTAHAF 60
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit. Members
of this family, all eukaryotic, are part of the group II
chaperonin complex called CCT (chaperonin containing
TCP-1) or TRiC. The archaeal equivalent group II
chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
eta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 523
Score = 28.2 bits (63), Expect = 8.5
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 126 RHTYVTNCSGRVRSLTISTFLVSSRALQVFYEHGRSIHD-ILTEQKSLEGGSLLGG 180
R+ T C ++ T ++ A Q E RS+HD I+ +++L+ ++ G
Sbjct: 355 RYNLFTGCPH-AKT---CTIILRGGAEQFIEEAERSLHDAIMIVRRALKNKKIVAG 406
>gnl|CDD|178031 PLN02409, PLN02409, serine--glyoxylate aminotransaminase.
Length = 401
Score = 28.2 bits (63), Expect = 8.5
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 198 VPAPLNFHQISDIRILQVMSSMLTG-IAGTFFSGTFELSPDIRHTFGT 244
VP P+N + R+L+ M+ + F + T EL D+++ F T
Sbjct: 14 VPGPVNIPE----RVLRAMNRPNEDHRSPAFPALTKELLEDVKYIFKT 57
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.137 0.420
Gapped
Lambda K H
0.267 0.0517 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,123,395
Number of extensions: 1698882
Number of successful extensions: 1098
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1095
Number of HSP's successfully gapped: 13
Length of query: 362
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 264
Effective length of database: 6,590,910
Effective search space: 1740000240
Effective search space used: 1740000240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.4 bits)