RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10922
(362 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 7e-05
Identities = 66/413 (15%), Positives = 121/413 (29%), Gaps = 134/413 (32%)
Query: 1 MAYTSRHWEGNRFPVPGIKLRTLRLARCISSPALQVF---YEHGRSIHDILTEQKSLEGG 57
+ Y S E ++ G + L L L F Y G IH +
Sbjct: 65 LGYVSSLVEPSK---VGQFDQVLNLC-------LTEFENCYLEGNDIHALA--------A 106
Query: 58 SLLGGPLRFPNTVILWLQC-------DKDKMRPWRESNMWPSAYKTDALPTKITRLNGLL 110
LL ++ K S ++ + + +A ++
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA---QL------- 156
Query: 111 IYI----GSSGTF--ELSPDIRHTYVTNCSGRVRSL------TISTFLVSSRALQVFYEH 158
+ I G++ + EL D+ TY V L T+S + ++ + +
Sbjct: 157 VAIFGGQGNTDDYFEELR-DLYQTY----HVLVGDLIKFSAETLSELIRTTLDAEKVFTQ 211
Query: 159 GRSIHDILTEQKSLEGGS-LLGGPLRFPNTVILWLQCDKEVPAPLNFHQISDIRILQV-- 215
G +I + L + LL P+ P +I +Q H + ++L
Sbjct: 212 GLNILEWLENPSNTPDKDYLLSIPISCP--LIGVIQL---------AHYVVTAKLLGFTP 260
Query: 216 --MSSMLTG--------IAGTFFSGTFELSPDIRHTFGTFGSQFGARHTYTVISRDAAFY 265
+ S L G + + T ++ +F R TV F+
Sbjct: 261 GELRSYLKGATGHSQGLVTAVAIAET--------DSWESFFVS--VRKAITV-----LFF 305
Query: 266 VGIR-------------------QTNNIQPTHRSVRMIYANLCCVHTSSTAV-NRCRLKP 305
+G+R + N P+ M L + + V +
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENNEGVPSP----M----LSISNLTQEQVQDYVNKTN 357
Query: 306 STLPR-QHRFTSSIDGRR-------TSDL-ALT---RQVCKPTRLAIIKISHR 346
S LP + S ++G + L L R+ P+ L +I
Sbjct: 358 SHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS 410
Score = 43.9 bits (103), Expect = 8e-05
Identities = 61/350 (17%), Positives = 100/350 (28%), Gaps = 105/350 (30%)
Query: 18 IKLRTLRLARCISSPA-LQVFYEHGRSIHDILTEQKSLEGGS-LLGGPLRFPNTVILWLQ 75
IK L+ I + + + G +I + L + LL P+ P +I +Q
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP--LIGVIQ 245
Query: 76 -------CDKDKMRPWR----------------------ESNMWPSAYKTDALPTKITRL 106
P E++ W S + ++ IT
Sbjct: 246 LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFF--VSVRKAIT-- 301
Query: 107 NGLLIYIG--SSGTF---ELSPDIRHTYVTNCSGR------VRSLTISTFLVSSRALQVF 155
+L +IG + L P I + N G + +LT
Sbjct: 302 --VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSH 359
Query: 156 YEHGRSIHDILTEQKSLEGGSLLGGPLRF-----PNT---VILWLQCDKEVPAPLNFHQI 207
G+ + I SL+ G P + + L L+ + AP Q
Sbjct: 360 LPAGKQVE-I----------SLVNGAKNLVVSGPPQSLYGLNLTLR---KAKAPSGLDQ- 404
Query: 208 SDI----RILQVMSSMLTGIAGTFFSGTFELSP---DIRHTFGTFGSQFGAR-------H 253
S I R L+ + L +A F S L P I F A+
Sbjct: 405 SRIPFSERKLKFSNRFLP-VASPFHSHL--LVPASDLINKDLVKNNVSFNAKDIQIPVYD 461
Query: 254 TYTVISRDAAFYVGIRQ-TNNIQPTHRSVRMIYANLC----CVHTSSTAV 298
T+ D +R + +I + R V I +T +
Sbjct: 462 TFD--GSD------LRVLSGSI--SERIVDCIIRLPVKWETTTQFKATHI 501
Score = 29.6 bits (66), Expect = 2.2
Identities = 16/94 (17%), Positives = 25/94 (26%), Gaps = 11/94 (11%)
Query: 190 LWLQCDKEVPAPLNFHQISDI-----RILQVMSSMLTG--IAGTFFSGTFELSPDIRHTF 242
+W + D F I DI L + G I + + FE D +
Sbjct: 1645 VWNRADNHFKDTYGF-SILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKT 1703
Query: 243 GTFGSQFGARHTYTVISRDAAFYVGIRQTNNIQP 276
+ T + + T QP
Sbjct: 1704 EKIFKEINEHSTSYTFRSEKGL---LSATQFTQP 1734
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation,
ATP-binding, cytoplasm, mitochondrion,
nucleotide-binding, nucleus; 2.95A {Saccharomyces
cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Length = 409
Score = 37.7 bits (88), Expect = 0.005
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
Query: 150 RALQVFYEHGRSIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQCDKEV 198
R L+++Y+ G+ + EQK L+F +T+ LWL E
Sbjct: 162 RMLEIYYKTGKKPSETFNEQKI---------TLKF-DTLFLWLYSKPEP 200
Score = 33.1 bits (76), Expect = 0.15
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 15/57 (26%)
Query: 24 RLARCISSPALQVFYEHGRSIHDILTEQKSLEGGSLLGGPLRFPNTVILWLQCDKDK 80
R+ R L+++Y+ G+ + EQK L+F +T+ LWL +
Sbjct: 159 RVQR-----MLEIYYKTGKKPSETFNEQKI---------TLKF-DTLFLWLYSKPEP 200
>2dc3_A Cytoglobin; myoglobin, heme, oxygen transport, oxygen storage,
riken structural genomics/proteomics initiative, RSGI,
structural genomics; HET: HEM; 1.68A {Homo sapiens} PDB:
1v5h_A* 3ag0_A* 1urv_A* 1umo_A* 1ury_A* 1ut0_A* 1ux9_A*
Length = 193
Score = 32.0 bits (72), Expect = 0.17
Identities = 9/94 (9%), Positives = 24/94 (25%), Gaps = 11/94 (11%)
Query: 195 DKEVPAPLNFHQISDIR-ILQVMSSMLTGIAGTFFSGTFELSPDIRHTFGTF-------- 245
+E L+ + ++ + + + + F P + F F
Sbjct: 15 RRERSEELSEAERKAVQAMWARLYANCEDVGVAILVRFFVNFPSAKQYFSQFKHMEDPLE 74
Query: 246 --GSQFGARHTYTVISRDAAFYVGIRQTNNIQPT 277
S +H V+ + + +
Sbjct: 75 MERSPQLRKHACRVMGALNTVVENLHDPDKVSSV 108
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.66
Identities = 26/213 (12%), Positives = 50/213 (23%), Gaps = 78/213 (36%)
Query: 3 YTSRHWEGNRFPVPGIKLRTLRLAR--CISSPALQVFYEHGRSIH--DILTEQKSLEGGS 58
++ W F + + L R ++ H H LT +
Sbjct: 254 QNAKAWNA--F---NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS--- 305
Query: 59 LLGGPLRFPNTVILWLQCDKDKMRPWRESNMWPSAYKTDALPTKITRLNGLLI-YIGSSG 117
LL + +L C LP ++ N + I
Sbjct: 306 LL----------LKYLDCRPQD------------------LPREVLTTNPRRLSIIA--- 334
Query: 118 TFELSPDIRHTYVTNCSGRVRSLTISTFLVSSRALQVFYEHGRSIHDILTE---QKSLEG 174
E D T+ + + + ++ L +K +
Sbjct: 335 --ESIRDGLATW-----DNWKHVNCDKL---TTIIESSLNV-------LEPAEYRKMFDR 377
Query: 175 GSLLGGPLRFPNTV--------ILWLQCDKEVP 199
S+ FP + ++W K
Sbjct: 378 LSV------FPPSAHIPTILLSLIWFDVIKSDV 404
>1gdj_A Leghemoglobin (deoxy); oxygen transport; HET: HEM; 1.70A {Lupinus
luteus} SCOP: a.1.1.2 PDB: 1gdi_A* 1gdk_A* 1gdl_A*
1lh1_A* 1lh2_A* 1lh3_A* 1lh5_A* 1lh6_A* 1lh7_A* 2gdm_A*
2lh1_A* 2lh2_A* 2lh3_A* 2lh5_A* 2lh6_A* 2lh7_A*
Length = 153
Score = 29.2 bits (65), Expect = 1.1
Identities = 10/93 (10%), Positives = 24/93 (25%), Gaps = 9/93 (9%)
Query: 200 APLNFHQISDIR-ILQVMSSMLTGIAGTFFSGTFELSPDIRHTFGTFGSQFGA------- 251
L Q + ++ + ++ + FF E++P + F
Sbjct: 1 GALTESQAALVKSSWEEFNANIPKHTHRFFILVLEIAPAAKDLFSFLKGTSEVPQNNPEL 60
Query: 252 -RHTYTVISRDAAFYVGIRQTNNIQPTHRSVRM 283
H V + + T + +
Sbjct: 61 QAHAGKVFKLVYEAAIQLEVTGVVVTDATLKNL 93
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 1.4
Identities = 8/19 (42%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 19 KLR-TLRLARCISSPALQV 36
KL+ +L+L S+PAL +
Sbjct: 24 KLQASLKLYADDSAPALAI 42
>1hlb_A Hemoglobin (deoxy); oxygen transport; HET: HEM; 2.50A {Caudina
arenicola} SCOP: a.1.1.2
Length = 158
Score = 29.0 bits (65), Expect = 1.4
Identities = 8/51 (15%), Positives = 13/51 (25%), Gaps = 1/51 (1%)
Query: 197 EVPAPLNFHQISDIR-ILQVMSSMLTGIAGTFFSGTFELSPDIRHTFGTFG 246
+ L Q +R + T F F P ++ F
Sbjct: 8 QAQGDLTLAQKKIVRKTWHQLMRNKTSFVTDVFIRIFAYDPSAQNKFPQMA 58
>1sct_B Hemoglobin II (carbonmonoxy) (beta chain); oxygen transport; HET:
HEM; 2.00A {Scapharca inaequivalvis} SCOP: a.1.1.2
Length = 151
Score = 28.8 bits (64), Expect = 1.5
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 195 DKEVPAPLNFHQISDIR-ILQVMSSMLTGIAGTFFSGTFELSPDIRHTFGTFG 246
+ N Q +R V+S + G + F+ SP + F G
Sbjct: 5 ELANAVVSNADQKDLLRMSWGVLSVDMEGTGLMLMANLFKTSPSAKGKFARLG 57
>1hlm_A Hemoglobin (cyano Met); oxygen transport; HET: HEM; 2.90A {Caudina
arenicola} SCOP: a.1.1.2
Length = 159
Score = 29.0 bits (65), Expect = 1.5
Identities = 13/74 (17%), Positives = 19/74 (25%), Gaps = 12/74 (16%)
Query: 197 EVPAPLNFHQISDIR-ILQVMSSMLTGIAGTFFSGTFELSPDIRHTFGTF---------- 245
+ L + IR + + TG F F P + F
Sbjct: 8 QSVGDLTPAEKDLIRSTWDQLMTHRTGFVADVFIRIFHNDPTAQRKFPQMAGLSPAELRT 67
Query: 246 GSQFGARHTYTVIS 259
Q A H V +
Sbjct: 68 SRQMHA-HAIRVSA 80
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural
genomics, NPPSFA, national project protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Length = 69
Score = 27.6 bits (61), Expect = 1.6
Identities = 10/47 (21%), Positives = 14/47 (29%), Gaps = 3/47 (6%)
Query: 56 GGSLLGGPLRFPNTVILWLQCDKDKMRPWRESNMWPSAYKTDALPTK 102
G S G + ++W+QC WR LP
Sbjct: 1 GSSGSSGEISGFGQCLVWVQCSFPNCGKWR---RLCGNIDPSVLPDN 44
>3rrs_A Cellobiose phosphorylase; GH94, alpha barrel, disaccharide
phosphorylase, transferase; 1.70A {Cellulomonas uda}
PDB: 2cqs_A* 2cqt_A* 3qfy_A* 3qfz_A* 3qg0_A* 3act_A*
3acs_A* 3afj_A*
Length = 822
Score = 29.7 bits (66), Expect = 1.7
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 109 LLIYIGSSGTFELSPDIRHTYVTNCSGRVRSLTISTF----LVSSRALQVFYEHGRSIHD 164
L ++ E+ + VTN S +SLT+ +F L +++ Q Y+ SI +
Sbjct: 117 TLFFVPVGENAEVQ-KVT---VTNTSDSYKSLTLFSFVEFCLWNAQDDQTNYQRNLSIGE 172
Query: 165 ILTEQKSLEGGSLL 178
+ EQ+S G ++
Sbjct: 173 VEVEQESPHGSAIY 186
>2oif_A Horvu GLB1, non-legume hemoglobin; hexacoordinate hemoglobin,
barley, ligand binding, non- symbiotic, symbiotic,
evolution; HET: HEM; 1.80A {Hordeum vulgare} PDB:
2r50_A* 1d8u_A* 2gnv_A* 2gnw_A* 3qqq_A* 3qqr_A*
Length = 162
Score = 28.8 bits (64), Expect = 1.8
Identities = 12/95 (12%), Positives = 28/95 (29%), Gaps = 9/95 (9%)
Query: 199 PAPLNFHQISDIR-ILQVMSSMLTGIAGTFFSGTFELSPDIRHTFGTF--------GSQF 249
+ + + + +M + FF FE++P R F +
Sbjct: 7 AVVFSEEKEALVLKSWAIMKKDSANLGLRFFLKIFEIAPSARQMFPFLRDSDVPLETNPK 66
Query: 250 GARHTYTVISRDAAFYVGIRQTNNIQPTHRSVRMI 284
H +V +R+ I +++ +
Sbjct: 67 LKTHAVSVFVMTCEAAAQLRKAGKITVRETTLKRL 101
>3g46_A Globin-1; oxygen transport, allostery, oxygen affinity, cytoplasm,
heme, iron, metal-binding, oxygen storage/transport,
oxygen binding; HET: HEM; 0.91A {Scapharca
inaequivalvis} PDB: 1nxf_A* 3g4q_A* 3g4r_A* 3g4u_A*
3g4v_A* 3g4w_A* 3g4y_A* 3g52_A* 3g53_A* 3uhg_A* 3uhs_A*
3uhk_A* 3uhi_A* 3uhn_A* 3ugy_A* 2auo_A* 2aup_A* 3uhr_A*
3uh5_A* 3uh3_A* ...
Length = 146
Score = 28.3 bits (63), Expect = 2.1
Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Query: 197 EVPAPLNFHQISDIR-ILQVMSSMLTGIAGTFFSGTFELSPDIRHTFGTFGSQ 248
+ A L D+R +V+ S G + F + + F G
Sbjct: 5 DAAAQLTADVKKDLRDSWKVIGSDKKGNGVALMTTLFADNQETIGYFKRLGDV 57
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 28.5 bits (63), Expect = 3.1
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 15/58 (25%)
Query: 304 KPSTLPRQHRFTSSIDGRRTSDLALTRQVCKPTRLAIIKISHRLYKEMYKTVSLEEPN 361
K P R S ++ T K + +I E ++ +++E P
Sbjct: 138 KAKVPPL-IRIVSGLELSDTKQ--------KGKKFLVIA------YEPFENIAIELPP 180
>1mba_A Myoglobin; oxygen storage; HET: HEM; 1.60A {Aplysia limacina} SCOP:
a.1.1.2 PDB: 2fal_A* 3mba_A* 4mba_A* 5mba_A* 2fam_A*
1dm1_A*
Length = 147
Score = 28.0 bits (62), Expect = 3.5
Identities = 8/48 (16%), Positives = 14/48 (29%), Gaps = 1/48 (2%)
Query: 202 LNFHQISDIR-ILQVMSSMLTGIAGTFFSGTFELSPDIRHTFGTFGSQ 248
L+ + + + F FE PD + F F +
Sbjct: 3 LSAAEADLAGKSWAPVFANKNANGLDFLVALFEKFPDSANFFADFKGK 50
>2j0p_A HEMS, hemin transport protein HEMS; conformational changes, HAEM,
iron, trans ION transport, proteobacteria, iron
transport; HET: HEM 12P; 1.7A {Yersinia enterocolitica}
SCOP: e.62.1.1 PDB: 2j0r_A*
Length = 345
Score = 27.2 bits (60), Expect = 8.6
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 149 SRALQVFYEHGRSIHDI-LTEQKSLEGGSLLGGPLRFPNTVILWLQCDKEVPAP 201
++Q F G ++H + +TEQ + L L L+
Sbjct: 123 RHSIQFFDHQGDALHKVYVTEQTDMPAWEALLAQFITTENPELQLEPLSAPEVT 176
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.420
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,390,109
Number of extensions: 309937
Number of successful extensions: 457
Number of sequences better than 10.0: 1
Number of HSP's gapped: 455
Number of HSP's successfully gapped: 22
Length of query: 362
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 267
Effective length of database: 4,049,298
Effective search space: 1081162566
Effective search space used: 1081162566
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.6 bits)