Query psy10923
Match_columns 520
No_of_seqs 302 out of 1177
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 21:57:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10923.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10923hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2156|consensus 100.0 7.5E-51 1.6E-55 422.6 13.8 262 25-314 253-526 (662)
2 PF03133 TTL: Tubulin-tyrosine 100.0 1.8E-50 3.9E-55 411.0 10.5 261 25-312 14-284 (292)
3 KOG2157|consensus 100.0 2.3E-43 5E-48 376.4 16.2 260 31-313 141-426 (497)
4 KOG2158|consensus 100.0 2.6E-35 5.5E-40 303.7 8.4 253 33-312 186-448 (565)
5 KOG2155|consensus 99.9 6.9E-25 1.5E-29 225.2 9.8 197 67-297 405-605 (631)
6 PF14398 ATPgrasp_YheCD: YheC/ 99.7 1.2E-15 2.6E-20 153.7 18.3 217 29-312 15-258 (262)
7 PF08443 RimK: RimK-like ATP-g 98.4 8.6E-07 1.9E-11 85.1 7.6 59 74-138 39-97 (190)
8 PRK10446 ribosomal protein S6 98.1 1.8E-05 3.9E-10 81.2 10.8 58 75-138 136-193 (300)
9 TIGR00768 rimK_fam alpha-L-glu 98.1 1.9E-05 4.2E-10 79.0 10.4 59 74-138 123-184 (277)
10 PF13535 ATP-grasp_4: ATP-gras 98.0 3.9E-05 8.5E-10 71.6 11.0 58 75-138 40-100 (184)
11 COG0189 RimK Glutathione synth 98.0 2.2E-05 4.7E-10 81.6 9.9 59 75-139 156-215 (318)
12 PLN02941 inositol-tetrakisphos 98.0 2.4E-05 5.3E-10 81.5 8.9 73 53-139 127-206 (328)
13 TIGR02144 LysX_arch Lysine bio 97.9 9E-05 1.9E-09 74.7 11.0 58 75-138 123-183 (280)
14 PF07478 Dala_Dala_lig_C: D-al 97.9 7.4E-05 1.6E-09 72.8 9.9 55 74-135 33-87 (203)
15 PRK01372 ddl D-alanine--D-alan 97.9 0.00033 7.1E-09 71.6 15.1 57 73-138 132-188 (304)
16 TIGR02291 rimK_rel_E_lig alpha 97.9 0.0001 2.2E-09 76.5 11.0 25 262-293 248-273 (317)
17 PRK14568 vanB D-alanine--D-lac 97.8 0.0002 4.3E-09 75.0 13.0 47 74-121 165-211 (343)
18 PF14397 ATPgrasp_ST: Sugar-tr 97.8 0.00021 4.5E-09 73.3 12.6 86 74-166 73-171 (285)
19 PRK14569 D-alanyl-alanine synt 97.8 0.00018 3.9E-09 73.8 11.5 55 74-138 130-184 (296)
20 PRK01966 ddl D-alanyl-alanine 97.7 0.00037 8.1E-09 72.7 13.3 57 74-139 162-218 (333)
21 PRK14571 D-alanyl-alanine synt 97.7 0.00033 7.1E-09 71.8 12.3 58 74-140 125-182 (299)
22 TIGR01205 D_ala_D_alaTIGR D-al 97.6 0.00064 1.4E-08 69.8 12.0 58 73-139 145-202 (315)
23 PRK14570 D-alanyl-alanine synt 97.4 0.0024 5.3E-08 67.7 13.8 56 74-138 171-226 (364)
24 TIGR01161 purK phosphoribosyla 97.3 0.0071 1.5E-07 63.4 15.6 46 73-121 132-178 (352)
25 PF02655 ATP-grasp_3: ATP-gras 97.2 0.00054 1.2E-08 64.1 6.0 42 73-121 30-71 (161)
26 TIGR03103 trio_acet_GNAT GNAT- 97.1 0.005 1.1E-07 68.7 13.3 53 77-138 334-387 (547)
27 PRK13278 purP 5-formaminoimida 97.1 0.0098 2.1E-07 62.9 14.7 57 75-137 150-210 (358)
28 PRK14572 D-alanyl-alanine synt 97.1 0.006 1.3E-07 64.1 13.0 57 74-139 171-227 (347)
29 COG1181 DdlA D-alanine-D-alani 97.1 0.0042 9.1E-08 64.7 11.3 103 22-135 91-196 (317)
30 PRK06019 phosphoribosylaminoim 96.9 0.028 6E-07 59.6 15.9 46 73-121 134-180 (372)
31 KOG2157|consensus 96.9 0.00053 1.1E-08 74.9 2.7 115 16-164 197-311 (497)
32 TIGR01142 purT phosphoribosylg 96.7 0.032 7E-07 58.8 14.7 49 73-121 135-186 (380)
33 PRK07206 hypothetical protein; 96.7 0.025 5.4E-07 60.5 13.8 47 75-121 147-199 (416)
34 PLN02257 phosphoribosylamine-- 96.7 0.026 5.7E-07 61.2 13.6 48 74-121 137-189 (434)
35 PF02955 GSH-S_ATP: Prokaryoti 96.6 0.0017 3.6E-08 61.9 3.5 80 53-138 10-91 (173)
36 TIGR00877 purD phosphoribosyla 96.6 0.059 1.3E-06 57.9 15.4 48 74-121 139-191 (423)
37 PRK06524 biotin carboxylase-li 96.5 0.036 7.9E-07 60.8 13.7 46 74-121 181-226 (493)
38 PRK13789 phosphoribosylamine-- 96.5 0.034 7.4E-07 60.2 13.3 48 74-121 143-195 (426)
39 PRK09288 purT phosphoribosylgl 96.5 0.066 1.4E-06 56.8 14.9 49 73-121 148-199 (395)
40 PRK00885 phosphoribosylamine-- 96.4 0.081 1.7E-06 56.9 15.6 48 74-121 137-189 (420)
41 PRK08462 biotin carboxylase; V 96.4 0.056 1.2E-06 58.6 14.4 51 72-122 152-207 (445)
42 TIGR01235 pyruv_carbox pyruvat 96.4 0.052 1.1E-06 65.5 15.2 61 73-140 151-216 (1143)
43 PRK05246 glutathione synthetas 96.4 0.0034 7.3E-08 65.1 4.4 55 76-138 156-214 (316)
44 PRK13790 phosphoribosylamine-- 96.3 0.057 1.2E-06 57.5 13.6 58 73-136 101-159 (379)
45 PRK14016 cyanophycin synthetas 96.3 0.024 5.2E-07 65.4 11.1 56 74-138 249-305 (727)
46 PRK13277 5-formaminoimidazole- 96.3 0.046 9.9E-07 57.8 12.1 57 74-136 152-216 (366)
47 TIGR00514 accC acetyl-CoA carb 96.3 0.069 1.5E-06 58.0 13.8 49 74-122 152-205 (449)
48 PRK02186 argininosuccinate lya 96.2 0.056 1.2E-06 63.8 13.5 59 73-137 141-199 (887)
49 TIGR01435 glu_cys_lig_rel glut 96.2 0.034 7.4E-07 63.9 11.3 54 76-138 513-569 (737)
50 PRK08463 acetyl-CoA carboxylas 96.0 0.12 2.6E-06 56.8 14.4 50 73-122 151-205 (478)
51 PRK05294 carB carbamoyl phosph 96.0 0.067 1.5E-06 64.4 13.2 50 73-122 703-753 (1066)
52 PRK06111 acetyl-CoA carboxylas 96.0 0.12 2.5E-06 56.0 13.9 49 74-122 152-205 (450)
53 PRK12833 acetyl-CoA carboxylas 95.7 0.12 2.7E-06 56.5 13.0 50 73-122 154-208 (467)
54 PRK02471 bifunctional glutamat 95.6 0.075 1.6E-06 61.6 11.1 54 76-138 526-582 (752)
55 PRK12999 pyruvate carboxylase; 95.5 0.21 4.5E-06 60.6 14.9 50 73-122 155-209 (1146)
56 TIGR02068 cya_phycin_syn cyano 95.5 0.14 3.1E-06 60.3 13.2 56 74-138 248-304 (864)
57 TIGR01380 glut_syn glutathione 95.5 0.014 3E-07 60.5 4.3 55 76-138 155-213 (312)
58 PRK08591 acetyl-CoA carboxylas 95.4 0.16 3.5E-06 55.0 12.5 49 74-122 152-205 (451)
59 PRK05586 biotin carboxylase; V 95.4 0.24 5.2E-06 53.8 13.8 49 74-122 152-205 (447)
60 PRK12458 glutathione synthetas 95.4 0.019 4E-07 60.4 5.0 55 77-138 165-221 (338)
61 PRK06849 hypothetical protein; 95.4 0.15 3.2E-06 54.2 11.9 44 74-121 152-195 (389)
62 PRK07178 pyruvate carboxylase 95.3 0.21 4.6E-06 54.7 12.9 50 73-122 150-204 (472)
63 PLN02948 phosphoribosylaminoim 95.3 0.47 1E-05 53.5 15.8 47 74-121 156-203 (577)
64 PRK14573 bifunctional D-alanyl 95.2 0.08 1.7E-06 61.9 9.8 47 74-121 610-656 (809)
65 TIGR01369 CPSaseII_lrg carbamo 95.0 0.27 5.8E-06 59.2 13.7 59 73-136 703-762 (1050)
66 PRK06395 phosphoribosylamine-- 95.0 0.25 5.5E-06 53.7 12.3 46 75-121 142-191 (435)
67 TIGR01369 CPSaseII_lrg carbamo 94.3 0.49 1.1E-05 57.1 13.6 48 74-121 162-210 (1050)
68 PLN02735 carbamoyl-phosphate s 94.0 0.51 1.1E-05 57.1 12.9 49 74-122 737-786 (1102)
69 PRK05294 carB carbamoyl phosph 93.7 0.77 1.7E-05 55.5 13.7 47 75-121 164-211 (1066)
70 PRK12767 carbamoyl phosphate s 93.7 0.28 6E-06 50.5 8.7 55 72-137 146-200 (326)
71 PF01071 GARS_A: Phosphoribosy 93.6 0.26 5.6E-06 47.9 7.6 45 77-121 41-90 (194)
72 PLN02735 carbamoyl-phosphate s 93.2 0.61 1.3E-05 56.5 11.7 46 76-121 182-228 (1102)
73 PF14403 CP_ATPgrasp_2: Circul 93.0 0.18 3.8E-06 54.9 6.1 53 70-125 334-388 (445)
74 PRK05784 phosphoribosylamine-- 92.7 0.83 1.8E-05 50.5 11.0 46 76-121 146-206 (486)
75 KOG2155|consensus 92.6 0.12 2.7E-06 55.1 4.0 90 422-519 332-447 (631)
76 COG4770 Acetyl/propionyl-CoA c 91.6 1.5 3.3E-05 48.6 11.1 69 75-151 153-226 (645)
77 COG1821 Predicted ATP-utilizin 91.4 0.36 7.8E-06 48.6 5.6 37 71-121 135-171 (307)
78 TIGR02712 urea_carbox urea car 91.2 2.5 5.4E-05 51.8 13.6 51 72-122 148-203 (1201)
79 PF03133 TTL: Tubulin-tyrosine 90.8 0.063 1.4E-06 54.8 -0.4 57 440-499 5-62 (292)
80 KOG0369|consensus 90.5 1 2.2E-05 50.7 8.5 56 70-125 180-240 (1176)
81 PRK08654 pyruvate carboxylase 89.8 0.59 1.3E-05 51.8 6.1 50 73-122 151-205 (499)
82 COG0151 PurD Phosphoribosylami 89.6 3.9 8.5E-05 44.1 11.8 52 70-121 134-190 (428)
83 PRK12815 carB carbamoyl phosph 89.4 3.8 8.2E-05 49.7 13.0 48 74-121 163-211 (1068)
84 COG0439 AccC Biotin carboxylas 89.3 0.43 9.2E-06 52.1 4.4 50 75-124 153-207 (449)
85 PRK12815 carB carbamoyl phosph 86.9 1.7 3.7E-05 52.6 8.0 56 73-135 704-759 (1068)
86 PF05770 Ins134_P3_kin: Inosit 83.2 11 0.00024 39.2 10.9 59 66-138 130-191 (307)
87 PF02786 CPSase_L_D2: Carbamoy 83.1 1.2 2.6E-05 43.7 3.6 50 74-123 38-92 (211)
88 COG1038 PycA Pyruvate carboxyl 82.2 13 0.00029 43.2 11.5 74 70-151 154-232 (1149)
89 KOG0238|consensus 81.1 9.9 0.00021 42.0 9.7 50 75-124 149-203 (670)
90 COG2308 Uncharacterized conser 80.6 5.5 0.00012 43.1 7.6 121 35-161 325-457 (488)
91 PF02222 ATP-grasp: ATP-grasp 71.0 27 0.00059 33.2 8.9 76 74-161 28-111 (172)
92 PHA02117 glutathionylspermidin 70.4 4 8.6E-05 44.0 3.4 59 76-138 309-367 (397)
93 KOG2156|consensus 61.0 2.4 5.3E-05 46.6 -0.4 73 434-512 238-312 (662)
94 PF15632 ATPgrasp_Ter: ATP-gra 59.2 27 0.00058 36.8 6.9 50 72-121 143-207 (329)
95 PF02750 Synapsin_C: Synapsin, 58.5 12 0.00025 36.6 3.8 96 32-138 11-106 (203)
96 KOG2158|consensus 57.3 3.4 7.4E-05 44.9 -0.0 38 257-302 12-51 (565)
97 PRK10507 bifunctional glutathi 51.8 15 0.00033 41.9 3.9 60 76-138 529-588 (619)
98 COG0027 PurT Formate-dependent 48.1 73 0.0016 33.5 7.7 94 35-139 109-208 (394)
99 KOG3895|consensus 39.7 1.4E+02 0.003 31.9 8.3 68 32-102 200-267 (488)
100 COG1759 5-formaminoimidazole-4 37.1 44 0.00095 35.1 4.2 48 74-121 150-203 (361)
101 COG0754 Gsp Glutathionylspermi 33.1 12 0.00026 39.6 -0.5 46 76-123 298-343 (387)
102 PF04174 CP_ATPgrasp_1: A circ 28.1 43 0.00092 35.3 2.5 93 22-117 234-330 (330)
103 PF15632 ATPgrasp_Ter: ATP-gra 26.2 45 0.00097 35.2 2.2 21 265-292 263-283 (329)
No 1
>KOG2156|consensus
Probab=100.00 E-value=7.5e-51 Score=422.61 Aligned_cols=262 Identities=26% Similarity=0.390 Sum_probs=222.6
Q ss_pred CCcccCCccchHHhhHHHHHHHHhhhcccCCCchhhh--hhhh--hhhhhcCCcceEEEcCCCCCCCCceEEeCChHHHH
Q psy10923 25 PVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQ--KYIE--KPLLIHGVNVVRVLKPVANCSGHGIRIYRQLEDIK 100 (520)
Q Consensus 25 P~~~~~Grk~~L~~~l~~~~~~~~~~~~~~~P~~~~~--~~~~--~~~~~~~~~~~WI~KP~~~srG~GI~l~~~~~~I~ 100 (520)
|++.-+|||++||++|.+++..++..++.|+|++++. +..+ +-+. +.....|||||.+++||.||.++++++++.
T Consensus 253 PGsF~IGRKD~lW~~~~~~~~rf~~kef~fmPrtyilP~d~e~lrk~w~-~nasr~wIVkppasaRg~gIrv~~kw~q~p 331 (662)
T KOG2156|consen 253 PGSFRIGRKDRLWRNILRNQVRFGKKEFGFMPRTYILPADREELRKYWE-KNASRLWIVKPPASARGIGIRVINKWSQFP 331 (662)
T ss_pred CCccccccchHHHHHHHHHHHHhcccccCccceeeeccccHHHHHHHHh-hCccccEEecCcccccCcceEeccchhhCC
Confidence 8999999999999999999999999999999999853 2222 2222 233445999999999999999999998876
Q ss_pred HHHhhcccCCCCcceeeeccccccccccceeeeeEEEEEeeecCceEEEEecceEEeecCCCCCCc---cccccccchhh
Q psy10923 101 RAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIWVYHEGYVRFCSKPYSNIL---LDEARHLTNVR 177 (520)
Q Consensus 101 ~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVLvts~~PL~vY~y~~g~vRfat~~Y~~~n---ld~~~HLTN~s 177 (520)
+ .++.|||+||++|+||+|.|||+|+||+|||++||+||+|.+||+|||+++|+..+ .|.|||||||+
T Consensus 332 k---------~rpLvvQ~yieRP~ling~KFDlrlYv~vts~nPLRIy~y~dgL~RFasvkYsp~~a~~~dKymhltnYs 402 (662)
T KOG2156|consen 332 K---------DRPLVVQKYIERPLLINGSKFDLRLYVVVTSVNPLRIYIYNDGLVRFASVKYSPFDANNVDKYMHLTNYS 402 (662)
T ss_pred C---------cccHHHHHHhhcceeecCcceeEEEEEEEeecCceEEEEeccceeeeccccCCcccccccceeEEecccc
Confidence 4 78999999999999999999999999999999999999999999999999999753 36899999999
Q ss_pred hhhhcccCCC--CCCCCCCCccCHHhHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhHhhhhhccCccceeeecccCC
Q psy10923 178 IQKQYRNVRD--PPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIMRAMEESIVTIMRCAQMWYVITNIDKFKIWVYHEGY 255 (520)
Q Consensus 178 iqk~~~~~~~--~~~~~~~~~ws~~~l~~~L~~~~g~~~~w~~I~~~Ik~ii~~t~~aa~~~~~~~~~~~Fe~~~~~~g~ 255 (520)
++|.+. |.. +-+.-.|++|++..++.|+.+ .|++. ++||++|+++|+++|.|.+..+.-. ...+. +..|
T Consensus 403 ~nke~~-ys~~k~~n~~~g~kwtl~~lw~~l~~-qGvdt--~kIW~qir~iV~kti~s~E~~i~~~-lr~~~----~~~~ 473 (662)
T KOG2156|consen 403 PNKESN-YSLNKYFNACQGSKWTLKSLWLYLDN-QGVDT--DKIWEQIRNIVIKTIISGEKGINSM-LRNYV----ENPY 473 (662)
T ss_pred ccccch-hhhhhHHhhcCCchhhHHHHHHHHHh-cCCCH--HHHHHHHHHHHHHHhhccChhHHHH-HHHHh----cCCc
Confidence 999765 331 112346999999999999998 89764 5999999999999999999887521 12221 1133
Q ss_pred ccccccccc-ceeeccccccccccccceEEEEecCCCCCCCcC-cchh-hhhhhhhhHHHHH
Q psy10923 256 VRFCSKPYS-NILLDEARHLTNVRIQKQYRNVRDPPQLPADLG-DYNF-LNYISEMTDYVRR 314 (520)
Q Consensus 256 ~~~cfel~G-D~llD~~~kp~~~~~~~wLLEVN~sPsl~~~~~-d~~i-~~~i~~~~d~v~~ 314 (520)
.|||++| ||+||++++| ||||||.+||++..++ |-.+ .+||++++++++-
T Consensus 474 --~CfELfgFDiilDedLkp-------wLlEVNISPSLhS~tpld~~vk~~li~~vlNlagi 526 (662)
T KOG2156|consen 474 --SCFELFGFDIILDEDLKP-------WLLEVNISPSLHSETPLDCSVKAPLIQDVLNLAGI 526 (662)
T ss_pred --hhhhhhcceEEecCccce-------eeEEEecccccccCCCccchhhhHHHHHHHHhcce
Confidence 6999999 9999999999 9999999999999988 8776 5999999998864
No 2
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=100.00 E-value=1.8e-50 Score=411.02 Aligned_cols=261 Identities=26% Similarity=0.440 Sum_probs=127.7
Q ss_pred CCcccCCccchHHhhHHHHHHHHhhhcccCCCchhhhh--hhhh-hhhhcCCcceEEEcCCCCCCCCceEEeCChHHHHH
Q psy10923 25 PVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQK--YIEK-PLLIHGVNVVRVLKPVANCSGHGIRIYRQLEDIKR 101 (520)
Q Consensus 25 P~~~~~Grk~~L~~~l~~~~~~~~~~~~~~~P~~~~~~--~~~~-~~~~~~~~~~WI~KP~~~srG~GI~l~~~~~~I~~ 101 (520)
|....+++|+.|++++.++.+..+.. +.++|+++... +... ........+.||+||++++||+||.|+++++++.+
T Consensus 14 p~~~~l~~K~~l~~~l~~~~~~~~~~-~~~~p~t~~l~~~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~l~~~~~~i~~ 92 (292)
T PF03133_consen 14 PGSQELTRKDLLAKNLQRYRKKFPKE-FDFYPETFILPQDYKEFLKYFEKNPKNLWIVKPSNGSRGRGIKLFNNLEQILR 92 (292)
T ss_dssp --EEEE------------------------------HHHHHHHHHHHHHTTS---EEEEES-------EEEES-HHHHHC
T ss_pred CCCchhhhhHHHHHHHHHHHhhcCCc-ccCCcceEecHHHHHHHHHHHhcCCCCEEEEeccccCCCCCceecCCHHHHHH
Confidence 66778899999999999998877544 77889887532 2221 22233445899999999999999999999999885
Q ss_pred HHhhcccCCCCcceeeeccccccccccceeeeeEEEEEeeecCceEEEEecceEEeecCCCC--CCcc-ccccccchhhh
Q psy10923 102 AIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIWVYHEGYVRFCSKPYS--NILL-DEARHLTNVRI 178 (520)
Q Consensus 102 ~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVLvts~~PL~vY~y~~g~vRfat~~Y~--~~nl-d~~~HLTN~si 178 (520)
... ...+++||||||++||||+|||||||+||||||++||+||+|++||+|||+++|+ ..+. |.++||||++|
T Consensus 93 ~~~----~~~~~~vvQkYI~~PlLi~grKFDlR~yvlvts~~pl~vy~y~~g~vR~~~~~Y~~~~~~~~~~~~HlTN~~i 168 (292)
T PF03133_consen 93 FSK----NKNQPYVVQKYIENPLLIDGRKFDLRVYVLVTSLNPLRVYLYKEGYVRFASEPYDPDLDDLSDRFAHLTNYSI 168 (292)
T ss_dssp CHC----CTTS-EEEEE--SSB--BTTB-EEEEEEEEE-T--T--EEEES--EEEE-SS---------------------
T ss_pred Hhh----hhhhhhhhhhccCCCeEEeeeeEEEEEEEEEeeccceeeeeccCceEEeccceeecccccccccccccccccc
Confidence 311 2368999999999999999999999999999999999999999999999999999 4554 67999999999
Q ss_pred hhhcccCCCCCCCCCCCccCHHhHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhH-hhhhhccCccceeeecccCCcc
Q psy10923 179 QKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIMRAMEESIVTIMRCAQ-MWYVITNIDKFKIWVYHEGYVR 257 (520)
Q Consensus 179 qk~~~~~~~~~~~~~~~~ws~~~l~~~L~~~~g~~~~w~~I~~~Ik~ii~~t~~aa~-~~~~~~~~~~Fe~~~~~~g~~~ 257 (520)
|++++..........+++|++..|+.++++ |. .|+.+|++|.++++.++.++. .... . .+ +-.+
T Consensus 169 ~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~--~~~~~~~~i~~~i~~~~~~~~~~~~~-~---~~-------~~~~ 233 (292)
T PF03133_consen 169 QKKSESNEEDSNEENGNKWSLDQFEEYLKE--GI--DWEKIWEKICDIIIKTILAAEFRSSQ-P---NM-------PPRP 233 (292)
T ss_dssp ---------------EEEHHHHHHHCTTTS--SS---STTTCHHHHHHHHHHHHHH-HHHHH------T-------TSSS
T ss_pred ccccccccccccccccccchhhhhhhhccc--CC--CcccchhhhhHHHHHHhhhhhhhhcc-c---cc-------cccc
Confidence 998552222234456899999999999877 32 345788899999999998884 2211 1 10 1235
Q ss_pred ccccccc-ceeeccccccccccccceEEEEecCCCCCCCcC-cchh-hhhhhhhhHHH
Q psy10923 258 FCSKPYS-NILLDEARHLTNVRIQKQYRNVRDPPQLPADLG-DYNF-LNYISEMTDYV 312 (520)
Q Consensus 258 ~cfel~G-D~llD~~~kp~~~~~~~wLLEVN~sPsl~~~~~-d~~i-~~~i~~~~d~v 312 (520)
.|||+|| |||||++++| ||||||.+|+++.+++ +.++ .+||.++++++
T Consensus 234 ~~Fel~G~DfmlD~~~kp-------wLLEvN~~Psl~~~~~~~~~~~~~li~d~l~i~ 284 (292)
T PF03133_consen 234 NCFELFGFDFMLDEDLKP-------WLLEVNSNPSLSTSTPVDKELKPQLIDDLLKIV 284 (292)
T ss_dssp EE-EEEEEEEEEBTTS-E-------EEEEEESS------TTTHHHHHHHHHHHTTTTT
T ss_pred cccceeeeEEEecCCCeE-------EEeeCCCCCCcccCCHhHHHHHHHHHHHHhEEE
Confidence 7999999 9999999999 9999999999998887 6666 48999988743
No 3
>KOG2157|consensus
Probab=100.00 E-value=2.3e-43 Score=376.42 Aligned_cols=260 Identities=23% Similarity=0.377 Sum_probs=210.2
Q ss_pred CccchHHhhHHHHHHHHhhh-----------cccCCCchhh--hhh--hhhhhhhcCCcceEEEcCCCCCCCCceEEeCC
Q psy10923 31 GHGIRIYRQLEDIKRAIGTL-----------KNLTCPRCVV--QKY--IEKPLLIHGVNVVRVLKPVANCSGHGIRIYRQ 95 (520)
Q Consensus 31 Grk~~L~~~l~~~~~~~~~~-----------~~~~~P~~~~--~~~--~~~~~~~~~~~~~WI~KP~~~srG~GI~l~~~ 95 (520)
-||+.++.++.++++..+.. ..+++|.+++ .++ ..++++.+++++.||+||++.+||+||.++++
T Consensus 141 ~rkd~l~~~i~r~~~~~e~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~v~e~~~~~~~~~wIvKP~~~srg~GI~~~~~ 220 (497)
T KOG2157|consen 141 TRKDLLMKLIKRYLALLERSRLPKAQLEDYILLDYVETTFVLLDEYKKLVEEYEEDSERSWWIVKPASKSRGRGIFLFNT 220 (497)
T ss_pred hhhHHhhhhHHHHHHhccccccchhhcccceeecccchhhhhhhHHHHHHHHHHhccccceEEeccccccccceeEEecc
Confidence 35666666666666666552 4567777664 222 24556666899999999999999999999999
Q ss_pred hHHHHHHHhh----cccCCCCcceeeeccccccccccceeeeeEEEEEeeecCceEEEEecceEEeecCCCC-CCccc-c
Q psy10923 96 LEDIKRAIGT----LKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIWVYHEGYVRFCSKPYS-NILLD-E 169 (520)
Q Consensus 96 ~~~I~~~~~~----~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVLvts~~PL~vY~y~~g~vRfat~~Y~-~~nld-~ 169 (520)
++++..+... ...++.+.++||+||.+|+||+|+|||||.|||||+++|+.+|.|++|++|||+++|+ ..+++ .
T Consensus 221 l~~l~~~~~~~~~~~s~~~~~~~vv~~yi~~plli~~~KfDlR~~vlvt~~~pl~~y~yreg~lRf~t~~y~~~~nl~n~ 300 (497)
T KOG2157|consen 221 LSDLQAIVDSFDSFISENNDEGYVVSAYIDRPLLIGGHKFDLRQYVLVTHFDPLLLYRYREGFLRFSTEPYGPLVNLQNM 300 (497)
T ss_pred hhhhhhhhhcccccccccccccceeeeeccCccccCCceeeeeEEEEeecccchhheeeccceEEEEeccCcchhhhccc
Confidence 9999988642 1223478999999999999999999999999999999999999999999999999999 88886 8
Q ss_pred ccccchhhhhhhcccCCCC-CCCCCCCccCHHhHHHHHHHhcCCchhHH-HHHHHHHHHHHHHHHHhHhhhhhccCccce
Q psy10923 170 ARHLTNVRIQKQYRNVRDP-PQLPAELMWDFKQLRDYFTKNMNLPRKWD-MIMRAMEESIVTIMRCAQMWYVITNIDKFK 247 (520)
Q Consensus 170 ~~HLTN~siqk~~~~~~~~-~~~~~~~~ws~~~l~~~L~~~~g~~~~w~-~I~~~Ik~ii~~t~~aa~~~~~~~~~~~Fe 247 (520)
++||||++|||++++++.. +..+.+++|+...|..||+. .|.+..|. ..+..|...|+.++.+++..+.
T Consensus 301 ~~HLtN~siqK~~~~~~~~~s~~~~~~~w~~~~~~~yl~~-~~~~~~~~~~~i~~~~~~iv~~v~~s~~~~~-------- 371 (497)
T KOG2157|consen 301 SVHLTNVSIQKLYPNYCHLSSLLSESCKWTLNSLLLYLRN-IGSPCLELKLQIKPIITGIVLSVFASATTVP-------- 371 (497)
T ss_pred chhhhccccccCCCCcccccccccCCCcccHHHHHHHHHh-hcCCcccccccchhhhhhhhhhhhhhccccc--------
Confidence 9999999999999998843 33347999999999999998 66554443 6667777777777777776653
Q ss_pred eeecccCCccccccccc-ceeeccccccccccccceEEEEecCCCCCCCcC-cchhh-hhhhhhhHHHH
Q psy10923 248 IWVYHEGYVRFCSKPYS-NILLDEARHLTNVRIQKQYRNVRDPPQLPADLG-DYNFL-NYISEMTDYVR 313 (520)
Q Consensus 248 ~~~~~~g~~~~cfel~G-D~llD~~~kp~~~~~~~wLLEVN~sPsl~~~~~-d~~i~-~~i~~~~d~v~ 313 (520)
..+.|||+|| |||||++++| ||||||++|+++++++ |-.++ .++.++..+|-
T Consensus 372 -------~~~n~FElyG~DfliD~~lkp-------wLiEiNssP~~~~t~~~d~~l~~~l~~d~l~~v~ 426 (497)
T KOG2157|consen 372 -------SLANCFELYGFDFLIDEALKP-------WLIEINASPDLTQTTKNDARLKSKLIDDVLKVVV 426 (497)
T ss_pred -------cccchhhhhCcceeecCCCCe-------EEEEeecCCcccccchhhhHHHHHHHHHhhcccc
Confidence 1246888888 9999999999 9999999999999988 66664 78887766663
No 4
>KOG2158|consensus
Probab=100.00 E-value=2.6e-35 Score=303.67 Aligned_cols=253 Identities=18% Similarity=0.234 Sum_probs=199.3
Q ss_pred cchHHhhHHHHHHHHhhhcccCCCchhh--hhhhhhhhhhcCCcceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCC
Q psy10923 33 GIRIYRQLEDIKRAIGTLKNLTCPRCVV--QKYIEKPLLIHGVNVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLT 110 (520)
Q Consensus 33 k~~L~~~l~~~~~~~~~~~~~~~P~~~~--~~~~~~~~~~~~~~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~ 110 (520)
||.|- |.+|++.+++ ++.|.|+++. ..+.......+....++|+||..|++|.||+++++...+-.
T Consensus 186 kd~Ls--l~~mqkifpe-ey~fyp~sw~lPa~l~df~a~~~~~KrtfivkpDsgaqg~giylisDir~~g~--------- 253 (565)
T KOG2158|consen 186 KDILD--LLEMQKIFPE-EYMFYPTSWRLPAPLCDFPASTEIMKRTFIVKPDSGAQGSGIYLISDIREKGE--------- 253 (565)
T ss_pred HHHHh--HHHHHhcChH-HhcCCCccccCchHHHHHHHHHHHhcccEEECCCCCCCCcceeeechhhhhhH---------
Confidence 55555 8899999975 5667788763 34444333333445599999999999999999977665544
Q ss_pred CCcceeeecccccccc-ccceeeeeEEEEEeeecCceEEEEecceEEeecCCCCCC---cc-ccccccchhhhhhhcccC
Q psy10923 111 CPRCVVQKYIEKPLLI-HGVKFDLRVWYVITNIDKFKIWVYHEGYVRFCSKPYSNI---LL-DEARHLTNVRIQKQYRNV 185 (520)
Q Consensus 111 ~~~~VvQkYI~~PlLi-~GrKFDlRvyVLvts~~PL~vY~y~~g~vRfat~~Y~~~---nl-d~~~HLTN~siqk~~~~~ 185 (520)
.+..++|+||..|||+ |+.|||+|+|+|++|++||+||++++|++||||++|..+ |. +.|||||||++|+.+++|
T Consensus 254 ~Q~~~vQeyV~~pLli~dkyKfd~rvy~likSvdPlsIfva~eGlaRFcTeky~ePts~n~~~lymhlTnYslnk~nsny 333 (565)
T KOG2158|consen 254 YQNKKVQEYVTYPLLISDKYKFDQRVYSLIKSVDPLSIFVASEGLARFCTEKYIEPTSANRSHLYMHLTNYSLNKPNSNY 333 (565)
T ss_pred HHHHHHHHHhcccccccccceeeeeeeeeeeccCcceEEEeccchhhhhhccccCCCcccHHHHHHHHHHhhhcCCCccc
Confidence 3458999999999999 999999999999999999999999999999999999865 34 369999999999999999
Q ss_pred CCCC-CCCCCCccCHHhHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhHhhhhhccCccceeeecccCCccccccccc
Q psy10923 186 RDPP-QLPAELMWDFKQLRDYFTKNMNLPRKWDMIMRAMEESIVTIMRCAQMWYVITNIDKFKIWVYHEGYVRFCSKPYS 264 (520)
Q Consensus 186 ~~~~-~~~~~~~ws~~~l~~~L~~~~g~~~~w~~I~~~Ik~ii~~t~~aa~~~~~~~~~~~Fe~~~~~~g~~~~cfel~G 264 (520)
..+. ....|++..++.....+++ .|.+ ...+|.+|+.++++|..|..+.+...-.++|..- .-.+.||++.|
T Consensus 334 ~hsd~sq~~gSkR~Lsti~~ql~s-~gvd--tk~vwsDik~v~iktvlA~~peLk~~y~~~fp~h----~tgpacfqi~g 406 (565)
T KOG2158|consen 334 AHSDNSQVSGSKRQLSTINEQLDS-LGVD--TKFVWSDIKIVFIKTVLAESPELKEDYIDNFPYH----KTGPACFQIIG 406 (565)
T ss_pred cccCcccccchhHHHHHHHHHHHh-cCch--HHHHHhhhhhhhcchhhhcCHHHHHHHHHhCCCC----CcCCceEEEec
Confidence 8443 3445777777777777877 7754 4589999999999999999888765545666521 13478999999
Q ss_pred -ceeeccccccccccccceEEEEecCCCCCCCcC-cchhhhhhhhhhHHH
Q psy10923 265 -NILLDEARHLTNVRIQKQYRNVRDPPQLPADLG-DYNFLNYISEMTDYV 312 (520)
Q Consensus 265 -D~llD~~~kp~~~~~~~wLLEVN~sPsl~~~~~-d~~i~~~i~~~~d~v 312 (520)
|+++++.+.| .|+|||.+|++....- |.+- -+|.+.++.|
T Consensus 407 fDi~~~~k~~p-------illevnrapslr~~~~vd~e~-~ll~~~~n~v 448 (565)
T KOG2158|consen 407 FDIVKQRKVLP-------ILLEVNRAPSLRIWKVVDVEE-VLLYRIFNRV 448 (565)
T ss_pred cchhhccccch-------HHHHhcccccccccccCCCch-hHHHhhhhhh
Confidence 9999999998 9999999999988753 6543 3344444433
No 5
>KOG2155|consensus
Probab=99.91 E-value=6.9e-25 Score=225.24 Aligned_cols=197 Identities=22% Similarity=0.301 Sum_probs=160.8
Q ss_pred hhhhcCCcceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEEEeeecCce
Q psy10923 67 PLLIHGVNVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFK 146 (520)
Q Consensus 67 ~~~~~~~~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVLvts~~PL~ 146 (520)
+.+.+|..|.||+||++.+||-...+..++.+|.+.++ .++.|||+||++|+|..|-|||||..||+.|++||+
T Consensus 405 ~Rer~g~~N~WI~KPWNlAR~~Dt~vT~~L~~IIRm~E------tgPKiv~kYIe~P~LFr~gKFDlRYiVllrsi~Pl~ 478 (631)
T KOG2155|consen 405 NRERNGQHNVWIVKPWNLARGMDTTVTEDLNQIIRMIE------TGPKIVCKYIERPLLFRNGKFDLRYIVLLRSIAPLT 478 (631)
T ss_pred HHHhcCcCceEEechhhhhhcccchhhhhHHHHHHHHh------cCchHHHHhcCCcceeecCccceEEEEEEccccchh
Confidence 45678999999999999999999999999999999887 568899999999999988899999999999999999
Q ss_pred EEEEecceEEeecCCCCCCcccc-ccccc--hhhhhhhcccCCCCCCCCCCCccCHHhHHHHHHHhcCCchhHHHHHHHH
Q psy10923 147 IWVYHEGYVRFCSKPYSNILLDE-ARHLT--NVRIQKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIMRAM 223 (520)
Q Consensus 147 vY~y~~g~vRfat~~Y~~~nld~-~~HLT--N~siqk~~~~~~~~~~~~~~~~ws~~~l~~~L~~~~g~~~~w~~I~~~I 223 (520)
+|+|.-.++|||..+|++++++. ..|+| ||- .| -.....+.|-.-+++.+. ...|..+-.+|
T Consensus 479 ~yvy~~FWiRfsnn~fsL~~f~dyEtHFTVmNY~-~k-------------l~q~~ceeFi~~~ek~yp-~~pw~dvq~~i 543 (631)
T KOG2155|consen 479 AYVYNRFWIRFSNNEFSLSNFEDYETHFTVMNYL-EK-------------LLQMKCEEFIGEFEKGYP-CFPWEDVQCSI 543 (631)
T ss_pred hhheeheeeeecCCccchhhhhhhhhhhhhhhHH-HH-------------HhhccHHHHHHHHhhcCC-CCCcchhhhHH
Confidence 99999999999999999999864 69999 443 11 222334555555655333 34688899999
Q ss_pred HHHHHHHHHHhHhhhhhccCccceeeecccCCccccccccc-ceeeccccccccccccceEEEEecCCCCCCCcC
Q psy10923 224 EESIVTIMRCAQMWYVITNIDKFKIWVYHEGYVRFCSKPYS-NILLDEARHLTNVRIQKQYRNVRDPPQLPADLG 297 (520)
Q Consensus 224 k~ii~~t~~aa~~~~~~~~~~~Fe~~~~~~g~~~~cfel~G-D~llD~~~kp~~~~~~~wLLEVN~sPsl~~~~~ 297 (520)
..++.+.+.+|...-+ -++. ...|.+..+|| |+|+-.+..| .+||-|||||++|++...+-
T Consensus 544 ~~aire~~eaaak~~~-----e~g~-----a~~p~sramygvDlml~~~~~p---Vmq~qILEVNFnPDc~RACr 605 (631)
T KOG2155|consen 544 VPAIREPFEAAAKLNP-----ECGA-----ALLPNSRAMYGVDLMLAGDLTP---VMQPQILEVNFNPDCKRACR 605 (631)
T ss_pred HHHHHHHHhhhhccCC-----cccc-----cCCchhhhhhhheeeeccCCCc---cccceeEEEecCcchHHHhh
Confidence 9999999988865422 1111 22467899999 9999777765 68889999999999987764
No 6
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=99.68 E-value=1.2e-15 Score=153.68 Aligned_cols=217 Identities=16% Similarity=0.180 Sum_probs=145.4
Q ss_pred cCCccchHHhhHHHHHHHHhhhcccCCCchhh-hhhhhhhhhhcCCcceEEEcCCCCCCCCceEEe--------------
Q psy10923 29 CSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVV-QKYIEKPLLIHGVNVVRVLKPVANCSGHGIRIY-------------- 93 (520)
Q Consensus 29 ~~Grk~~L~~~l~~~~~~~~~~~~~~~P~~~~-~~~~~~~~~~~~~~~~WI~KP~~~srG~GI~l~-------------- 93 (520)
..+.|..+|+.|.+- +.. ..++|.|.+ ..+..-...++....+ ++||..|++|+||.-+
T Consensus 15 ~~~~Kw~v~~~L~~~----~~l-~~~LP~T~~~~~~~~l~~~L~~y~~v-ylKP~~Gs~G~gI~ri~~~~~~~~~~~~~~ 88 (262)
T PF14398_consen 15 GFFDKWEVYKALSRD----PEL-RPYLPETELLTSFEDLREMLNKYKSV-YLKPDNGSKGKGIIRIEKKGGGYRIQYRNK 88 (262)
T ss_pred CCCCHHHHHHHHHcC----Ccc-hhhCCCceEcCCHHHHHHHHHHCCEE-EEEeCCCCCCccEEEEEEeCCEEEEEEccC
Confidence 567899999965542 111 235566643 3333333334555555 8999999999999854
Q ss_pred --------CChHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEEEeeecCceEEEEecceEEeecCCCCCC
Q psy10923 94 --------RQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIWVYHEGYVRFCSKPYSNI 165 (520)
Q Consensus 94 --------~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVLvts~~PL~vY~y~~g~vRfat~~Y~~~ 165 (520)
.+.+++..++..... .+.||||++|.- ..++||.||+|+.|.- +....|......+|+|....-
T Consensus 89 ~~~~~~~~~~~~~l~~~l~~~~~--~~~yIiQq~I~l-~~~~gr~fD~RvlvqK---~~~G~W~vtg~~~Rva~~~~i-- 160 (262)
T PF14398_consen 89 KKNVRRTFSSLEELEQFLKELLG--KRRYIIQQGIPL-ATYDGRPFDFRVLVQK---NGSGKWQVTGIVARVAKPGSI-- 160 (262)
T ss_pred CceeEEEeCCHHHHHHHHHHhcC--CCcEEEeCCccc-cccCCCeEEEEEEEEE---CCCCCEEEEEEEEEEcCCCCc--
Confidence 356677776665544 679999999973 6779999999999984 457789999999999988733
Q ss_pred ccccccccchhhhhhhcccCCCCCCCCCCCccCHHhHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhHhhhhhccCcc
Q psy10923 166 LLDEARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIMRAMEESIVTIMRCAQMWYVITNIDK 245 (520)
Q Consensus 166 nld~~~HLTN~siqk~~~~~~~~~~~~~~~~ws~~~l~~~L~~~~g~~~~w~~I~~~Ik~ii~~t~~aa~~~~~~~~~~~ 245 (520)
+||.+ ..|. ...+.++|... .....+..+|.++...+..+....+. .
T Consensus 161 -------vTN~~--------------~GG~---~~~~~~~l~~~----~~~~~~~~~l~~~a~~ia~~le~~~~----~- 207 (262)
T PF14398_consen 161 -------VTNLS--------------QGGT---ALPFEEVLRQS----EEAEKIREELEDLALEIAQALEKHFG----G- 207 (262)
T ss_pred -------eeccC--------------CCce---ecCHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHHhcC----C-
Confidence 45543 0133 33345555552 12347777888877766666554432 1
Q ss_pred ceeeecccCCccccccccc-ceeeccccccccccccceEEEEecCCCCCCCcC--cchh-hhhhhhhhHHH
Q psy10923 246 FKIWVYHEGYVRFCSKPYS-NILLDEARHLTNVRIQKQYRNVRDPPQLPADLG--DYNF-LNYISEMTDYV 312 (520)
Q Consensus 246 Fe~~~~~~g~~~~cfel~G-D~llD~~~kp~~~~~~~wLLEVN~sPsl~~~~~--d~~i-~~~i~~~~d~v 312 (520)
. +-.+| |+.||.++++ ||||||+.|+...... |.++ .+++...++|.
T Consensus 208 ------------~-~gElGiDl~iD~~g~i-------WliEvN~kP~~~~~~~~~~~~~~~~~~~~pl~Ya 258 (262)
T PF14398_consen 208 ------------H-LGELGIDLGIDKNGKI-------WLIEVNSKPGKFDFRDIGDKELIRQSYRRPLEYA 258 (262)
T ss_pred ------------c-eeEEEEEEEEcCCCCE-------EEEEEeCCCCcchhhcccchHHHHHHHHHHHHHH
Confidence 0 23356 9999999999 9999999999766543 4544 45666666654
No 7
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=98.37 E-value=8.6e-07 Score=85.08 Aligned_cols=59 Identities=27% Similarity=0.490 Sum_probs=30.6
Q ss_pred cceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEE
Q psy10923 74 NVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYV 138 (520)
Q Consensus 74 ~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVL 138 (520)
...-|+||..++.|+|+.++++.+++...++.... ...+.++|+||+.+ +| -|+|+||+
T Consensus 39 ~~p~ViKp~~g~~G~gV~~i~~~~~~~~~l~~~~~-~~~~~~~Q~fI~~~---~g--~d~Rv~Vi 97 (190)
T PF08443_consen 39 GFPVVIKPLRGSSGRGVFLINSPDELESLLDAFKR-LENPILVQEFIPKD---GG--RDLRVYVI 97 (190)
T ss_dssp -SSEEEE-SB-------EEEESHCHHHHHHH------TTT-EEEE----S---S-----EEEEEE
T ss_pred CCCEEEeeCCCCCCCEEEEecCHHHHHHHHHHHHh-ccCcceEeccccCC---CC--cEEEEEEE
Confidence 44579999999999999999999988877654221 24688999999852 22 59999997
No 8
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=98.10 E-value=1.8e-05 Score=81.20 Aligned_cols=58 Identities=22% Similarity=0.339 Sum_probs=44.8
Q ss_pred ceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEE
Q psy10923 75 VVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYV 138 (520)
Q Consensus 75 ~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVL 138 (520)
-.+|+||..++.|+|+.++++.+++..+.+.... ....++||+||..+ .-.|+|+.|+
T Consensus 136 ~P~VvKP~~g~~g~GV~~v~~~~~~~~~~~~~~~-~~~~~lvQe~I~~~-----~g~d~rv~vi 193 (300)
T PRK10446 136 APLVVKLVEGTQGIGVVLAETRQAAESVIDAFRG-LNAHILVQEYIKEA-----QGCDIRCLVV 193 (300)
T ss_pred CCEEEEECCCCCcccEEEEcCHHHHHHHHHHHHh-cCCCEEEEeeeccC-----CCceEEEEEE
Confidence 3689999999999999999998887766654321 14579999999731 2379999876
No 9
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=98.08 E-value=1.9e-05 Score=78.95 Aligned_cols=59 Identities=27% Similarity=0.319 Sum_probs=44.6
Q ss_pred cceEEEcCCCCCCCCceEEeCChHHHHHHHhhccc--CCCCcceeeeccccccccccce-eeeeEEEE
Q psy10923 74 NVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN--LTCPRCVVQKYIEKPLLIHGVK-FDLRVWYV 138 (520)
Q Consensus 74 ~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~--~~~~~~VvQkYI~~PlLi~GrK-FDlRvyVL 138 (520)
+-.+|+||..++.|+|+.++++.+++....+.... .....+++|+||+. .. +|+|++++
T Consensus 123 ~~p~vvKP~~g~~g~gv~~i~~~~~l~~~~~~~~~~~~~~~~~lvQe~I~~------~~~~~~rv~v~ 184 (277)
T TIGR00768 123 GFPVVLKPVFGSWGRLVSLARDKQAAETLLEHFEQLNGPQNLFYVQEYIKK------PGGRDIRVFVV 184 (277)
T ss_pred CCCEEEEECcCCCCCceEEEcCHHHHHHHHHHHHHhcccCCcEEEEeeecC------CCCceEEEEEE
Confidence 34789999999999999999999888766543221 01247999999983 33 69999875
No 10
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=98.04 E-value=3.9e-05 Score=71.65 Aligned_cols=58 Identities=22% Similarity=0.347 Sum_probs=41.8
Q ss_pred ceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccC---CCCcceeeeccccccccccceeeeeEEEE
Q psy10923 75 VVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNL---TCPRCVVQKYIEKPLLIHGVKFDLRVWYV 138 (520)
Q Consensus 75 ~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~---~~~~~VvQkYI~~PlLi~GrKFDlRvyVL 138 (520)
..||+||..++.|+|++++++.+++.++.+.+... ....+|||+||. |.-+.++.++.
T Consensus 40 ~p~vvKp~~g~gs~gv~~~~~~~~l~~~~~~~~~~~~~~~~~~ivqe~i~------g~e~~~~~~~~ 100 (184)
T PF13535_consen 40 FPFVVKPVDGSGSRGVFIVHSPEELEAALAEIREDSPLGNGPVIVQEYIP------GDEYSVDGVVD 100 (184)
T ss_dssp SSEEEEESS-STTTT-EEESSHHHHHHHHHHHHHHHS-HSSSEEEEE---------SEEEEEEEEEE
T ss_pred CCEEEEcCccccCCCEEEeCCHHHHHHHHHHHHHhcccCCccEEEEEeee------eeeEEEEEEEE
Confidence 67999999999999999999999999887654321 135799999997 66677776654
No 11
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=2.2e-05 Score=81.64 Aligned_cols=59 Identities=27% Similarity=0.318 Sum_probs=45.3
Q ss_pred ceEEEcCCCCCCCCceEEeCChH-HHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEEE
Q psy10923 75 VVRVLKPVANCSGHGIRIYRQLE-DIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVI 139 (520)
Q Consensus 75 ~~WI~KP~~~srG~GI~l~~~~~-~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVLv 139 (520)
..=|+||..|+.|+||+.+++.+ ++....+.........++||+||..|- =|.|.++++
T Consensus 156 ~pvVlKp~~Gs~G~gV~~v~~~d~~l~~~~e~~~~~~~~~~ivQeyi~~~~------~~~rrivv~ 215 (318)
T COG0189 156 FPVVLKPLDGSGGRGVFLVEDADPELLSLLETLTQEGRKLIIVQEYIPKAK------RDDRRVLVG 215 (318)
T ss_pred CCEEEeeCCCCCccceEEecCCChhHHHHHHHHhccccceEehhhhcCccc------CCcEEEEEe
Confidence 44599999999999999999998 888777766542234699999998643 356666664
No 12
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=97.97 E-value=2.4e-05 Score=81.46 Aligned_cols=73 Identities=19% Similarity=0.334 Sum_probs=52.4
Q ss_pred cCCCchhhhhhh----hhhhhhcCCcceEEEcCCCC---CCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccccccc
Q psy10923 53 LTCPRCVVQKYI----EKPLLIHGVNVVRVLKPVAN---CSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLL 125 (520)
Q Consensus 53 ~~~P~~~~~~~~----~~~~~~~~~~~~WI~KP~~~---srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlL 125 (520)
...|++++..-. .......+-+-.-|+||..+ +.|+|+.++.+.+.+... ..++++|+||+.|
T Consensus 127 i~~P~t~v~~~~~~al~~~~~~~~l~~P~V~KPl~g~Gss~gh~m~lv~~~~~L~~l--------~~p~~lQEfVnh~-- 196 (328)
T PLN02941 127 VGVPKQLVVYDDESSIPDAVALAGLKFPLVAKPLVADGSAKSHKMSLAYDQEGLSKL--------EPPLVLQEFVNHG-- 196 (328)
T ss_pred CCCCCEEEEcCHHHHHHHHHHHhcCCCCEEEeecccCCCccccceEEecCHHHHHhc--------CCcEEEEEecCCC--
Confidence 456776642211 11123345555679999999 999999999998887652 3479999999875
Q ss_pred cccceeeeeEEEEE
Q psy10923 126 IHGVKFDLRVWYVI 139 (520)
Q Consensus 126 i~GrKFDlRvyVLv 139 (520)
| .|+|+||+=
T Consensus 197 --g--~d~RVfVvG 206 (328)
T PLN02941 197 --G--VLFKVYVVG 206 (328)
T ss_pred --C--EEEEEEEEC
Confidence 4 599999983
No 13
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=97.88 E-value=9e-05 Score=74.72 Aligned_cols=58 Identities=28% Similarity=0.439 Sum_probs=43.5
Q ss_pred ceEEEcCCCCCCCCceEEeCChHHHHHHHhh---cccCCCCcceeeeccccccccccceeeeeEEEE
Q psy10923 75 VVRVLKPVANCSGHGIRIYRQLEDIKRAIGT---LKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYV 138 (520)
Q Consensus 75 ~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~---~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVL 138 (520)
-..|+||..++.|+|+.++.+.+++.+..+. ........+++|+||..| -.|+|++|+
T Consensus 123 ~P~vvKP~~g~~g~gv~~v~~~~~l~~~~~~~~~~~~~~~~~~ivQefI~~~------~~d~~v~vi 183 (280)
T TIGR02144 123 YPVVLKPVIGSWGRLVALIRDKDELESLLEHKEVLGGSQHKLFYIQEYINKP------GRDIRVFVI 183 (280)
T ss_pred CCEEEEECcCCCcCCEEEECCHHHHHHHHHHHHhhcCCcCCeEEEEcccCCC------CCceEEEEE
Confidence 3589999999999999999998887765432 111123579999999743 368999886
No 14
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=97.88 E-value=7.4e-05 Score=72.79 Aligned_cols=55 Identities=24% Similarity=0.343 Sum_probs=41.4
Q ss_pred cceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeE
Q psy10923 74 NVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRV 135 (520)
Q Consensus 74 ~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRv 135 (520)
+-.+|+||..+..+.||..+.+.+++...++...+ -....+|++||. |+-|-+-+
T Consensus 33 ~~P~~VKP~~~GsS~Gi~~v~~~~el~~ai~~~~~-~~~~vlVEefI~------G~E~tv~v 87 (203)
T PF07478_consen 33 GFPLFVKPASEGSSIGISKVHNEEELEEAIEKAFK-YDDDVLVEEFIS------GREFTVGV 87 (203)
T ss_dssp SSSEEEEESSTSTTTTEEEESSHHHHHHHHHHHTT-THSEEEEEE--S------SEEEEEEE
T ss_pred CCCEEEEECCCCccEEEEEcCCHHHHHHHHHHHhh-hcceEEEEeeec------ccceEEEE
Confidence 44789999999999999999999999888775432 356899999985 76555443
No 15
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=97.87 E-value=0.00033 Score=71.62 Aligned_cols=57 Identities=23% Similarity=0.339 Sum_probs=43.5
Q ss_pred CcceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEE
Q psy10923 73 VNVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYV 138 (520)
Q Consensus 73 ~~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVL 138 (520)
.+-.+|+||..++.|+|+.++.+.+++.+..+... .....++||+||. |+ ++++.|+
T Consensus 132 ~~~P~ivKP~~g~~s~Gv~~v~~~~el~~~~~~~~-~~~~~~lvEe~i~------G~--E~~v~vi 188 (304)
T PRK01372 132 LGLPLVVKPAREGSSVGVSKVKEEDELQAALELAF-KYDDEVLVEKYIK------GR--ELTVAVL 188 (304)
T ss_pred cCCCEEEeeCCCCCCCCEEEeCCHHHHHHHHHHHH-hcCCcEEEEcccC------CE--EEEEEEE
Confidence 34568999999999999999999999887665321 1246799999996 54 6666554
No 16
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=97.85 E-value=0.0001 Score=76.47 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=22.2
Q ss_pred ccc-ceeeccccccccccccceEEEEecCCCCC
Q psy10923 262 PYS-NILLDEARHLTNVRIQKQYRNVRDPPQLP 293 (520)
Q Consensus 262 l~G-D~llD~~~kp~~~~~~~wLLEVN~sPsl~ 293 (520)
..| |+++|.+..| |+||||..|++.
T Consensus 248 ~~GvDii~~~~~g~-------~VlEVN~~Pg~t 273 (317)
T TIGR02291 248 YMGVDMVLDKEEGP-------LVLELNARPGLA 273 (317)
T ss_pred eEEEEEEEeCCCCE-------EEEEeCCCCCCC
Confidence 356 9999988778 999999999997
No 17
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=97.83 E-value=0.0002 Score=75.04 Aligned_cols=47 Identities=13% Similarity=0.256 Sum_probs=38.1
Q ss_pred cceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccc
Q psy10923 74 NVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIE 121 (520)
Q Consensus 74 ~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~ 121 (520)
.-.||+||..++.+.||.++++.+++...++...+ .....+||+||.
T Consensus 165 ~~P~iVKP~~~gsS~Gv~~v~~~~eL~~a~~~a~~-~~~~vlVEe~I~ 211 (343)
T PRK14568 165 TYPVFVKPARSGSSFGVSKVNSADELDYAIESARQ-YDSKVLIEEAVV 211 (343)
T ss_pred CCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHh-cCCcEEEECCcC
Confidence 44799999999999999999999999877664321 145799999996
No 18
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=97.82 E-value=0.00021 Score=73.28 Aligned_cols=86 Identities=16% Similarity=0.147 Sum_probs=52.6
Q ss_pred cceEEEcCCCCCCCCceEEeCChH---------HHHHHHhhcccCCCCcceeeeccccccccc----cceeeeeEEEEEe
Q psy10923 74 NVVRVLKPVANCSGHGIRIYRQLE---------DIKRAIGTLKNLTCPRCVVQKYIEKPLLIH----GVKFDLRVWYVIT 140 (520)
Q Consensus 74 ~~~WI~KP~~~srG~GI~l~~~~~---------~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~----GrKFDlRvyVLvt 140 (520)
....++||..+++|+||.++...+ .+........ ...+|||++|+.=-.+. .---+||+.+++.
T Consensus 73 ~~~~viKP~~G~~G~Gi~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~ 149 (285)
T PF14397_consen 73 PDRFVIKPANGSGGKGILVIDRRDGSEINRDISALYAGLESLG---GKDYLIQERIEQHPELAALSPSSVNTIRVVTFLD 149 (285)
T ss_pred CCcEEEEeCCCCCccCEEEEEeecCcccccchhHHHHHHHhcC---CccEEEEecccCCHHHHhhCCCCCCcEEEEEEEe
Confidence 467799999999999999986543 1222222211 12899999998633332 2335899988764
Q ss_pred eecCceEEEEecceEEeecCCCCCCc
Q psy10923 141 NIDKFKIWVYHEGYVRFCSKPYSNIL 166 (520)
Q Consensus 141 s~~PL~vY~y~~g~vRfat~~Y~~~n 166 (520)
. -.+++ -..+.|++...-..+|
T Consensus 150 ~---~~~~~-~~a~lRlg~~~~~~DN 171 (285)
T PF14397_consen 150 D---GEVEV-LMAMLRLGRGGSGVDN 171 (285)
T ss_pred C---CeeEE-EEEEEEeCCCCCcccc
Confidence 4 22222 2367788744444444
No 19
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=97.78 E-value=0.00018 Score=73.82 Aligned_cols=55 Identities=15% Similarity=0.277 Sum_probs=43.0
Q ss_pred cceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEE
Q psy10923 74 NVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYV 138 (520)
Q Consensus 74 ~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVL 138 (520)
+-.+|+||..++.|.|+.++.+.+++...++.... ...++||+||+ |+ ++.+-|+
T Consensus 130 ~~P~vVKP~~ggss~Gv~~v~~~~eL~~a~~~~~~--~~~~lvEefI~------G~--E~tv~vl 184 (296)
T PRK14569 130 SFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASK--YGEVMIEQWVT------GK--EITVAIV 184 (296)
T ss_pred CCCEEEEeCCCCCCcCeEEcCCHHHHHHHHHHHHh--cCCEEEEcccc------cE--EEEEEEE
Confidence 44789999999999999999999999887765432 34799999994 65 5555554
No 20
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=97.74 E-value=0.00037 Score=72.69 Aligned_cols=57 Identities=18% Similarity=0.190 Sum_probs=44.2
Q ss_pred cceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEEE
Q psy10923 74 NVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVI 139 (520)
Q Consensus 74 ~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVLv 139 (520)
+-.||+||..+..|.||.++.+.+++.+.++..-. ....++||+||. |+ ++++-|+-
T Consensus 162 ~~P~vVKP~~~gsS~Gv~~v~~~~el~~a~~~~~~-~~~~vlvEefI~------G~--E~~v~vl~ 218 (333)
T PRK01966 162 GLPVFVKPANLGSSVGISKVKNEEELAAALDLAFE-YDRKVLVEQGIK------GR--EIECAVLG 218 (333)
T ss_pred CCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHh-cCCcEEEEcCcC------CE--EEEEEEEC
Confidence 45799999999999999999999999887764321 246899999997 54 55666654
No 21
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=97.73 E-value=0.00033 Score=71.79 Aligned_cols=58 Identities=26% Similarity=0.295 Sum_probs=44.7
Q ss_pred cceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEEEe
Q psy10923 74 NVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVIT 140 (520)
Q Consensus 74 ~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVLvt 140 (520)
+-.||+||..++.|.|+.++.+.+++...++.... ....++||+||+ |+ ++++-|+..
T Consensus 125 ~~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~-~~~~vlVEeyI~------G~--E~sv~vl~~ 182 (299)
T PRK14571 125 GYPCVVKPRREGSSIGVFICESDEEFQHALKEDLP-RYGSVIVQEYIP------GR--EMTVSILET 182 (299)
T ss_pred CCCEEEecCCCCCcCCEEEECCHHHHHHHHHHHHh-hCCcEEEEcccc------ce--EEEEEEEcC
Confidence 45799999999999999999999998876654211 145799999995 54 777766653
No 22
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=97.58 E-value=0.00064 Score=69.79 Aligned_cols=58 Identities=19% Similarity=0.307 Sum_probs=44.3
Q ss_pred CcceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEEE
Q psy10923 73 VNVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVI 139 (520)
Q Consensus 73 ~~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVLv 139 (520)
.+-.+|+||..++.|.||.++.+.+++...++.... ....++||+||. |+ ++++.++.
T Consensus 145 ~~~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~~-~~~~~lvEe~i~------G~--e~~v~vi~ 202 (315)
T TIGR01205 145 LGFPVIVKPAREGSSVGVSKVKSEEELQAALDEAFE-YDEEVLVEQFIK------GR--ELEVSILG 202 (315)
T ss_pred cCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHh-cCCcEEEEcCCC------CE--EEEEEEEC
Confidence 345789999999999999999999998877653221 245799999984 54 67776664
No 23
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=97.40 E-value=0.0024 Score=67.66 Aligned_cols=56 Identities=20% Similarity=0.263 Sum_probs=43.4
Q ss_pred cceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEE
Q psy10923 74 NVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYV 138 (520)
Q Consensus 74 ~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVL 138 (520)
+-..|+||..+..|.||.++.+.+++...++.... .+...+||+||. |+ ++++-|+
T Consensus 171 g~PviVKP~~~GsS~Gv~~v~~~~el~~al~~a~~-~~~~vlVEefI~------Gr--Ei~v~Vl 226 (364)
T PRK14570 171 GYPVIVKPAVLGSSIGINVAYNENQIEKCIEEAFK-YDLTVVIEKFIE------AR--EIECSVI 226 (364)
T ss_pred CCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHh-CCCCEEEECCcC------CE--EEEEEEE
Confidence 45789999998889999999999999887764322 245689999996 54 5666665
No 24
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=97.28 E-value=0.0071 Score=63.43 Aligned_cols=46 Identities=24% Similarity=0.386 Sum_probs=37.9
Q ss_pred CcceEEEcCCCCC-CCCceEEeCChHHHHHHHhhcccCCCCcceeeeccc
Q psy10923 73 VNVVRVLKPVANC-SGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIE 121 (520)
Q Consensus 73 ~~~~WI~KP~~~s-rG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~ 121 (520)
.+-.+|+||..++ .|+|+.++++.+++.+..+... ...++||+||+
T Consensus 132 ~g~P~vvKp~~~g~~g~Gv~~v~~~~el~~a~~~~~---~~~~lvEe~I~ 178 (352)
T TIGR01161 132 LGFPVVLKARTGGYDGRGQYRIRNEADLPQAAKELG---DRECIVEEFVP 178 (352)
T ss_pred cCCCEEEEeCCCCCCCCCEEEECCHHHHHHHHHhcC---CCcEEEEecCC
Confidence 3457899999975 8999999999999987776543 34899999997
No 25
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=97.24 E-value=0.00054 Score=64.05 Aligned_cols=42 Identities=29% Similarity=0.522 Sum_probs=17.8
Q ss_pred CcceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccc
Q psy10923 73 VNVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIE 121 (520)
Q Consensus 73 ~~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~ 121 (520)
....||+||..|+.|.||.++++.++...... ...++|+||+
T Consensus 30 ~~~~~viKp~~G~Gg~~i~~~~~~~~~~~~~~-------~~~i~Qe~i~ 71 (161)
T PF02655_consen 30 IDGPWVIKPRDGAGGEGIRIVDSEDELEEFLN-------KLRIVQEFIE 71 (161)
T ss_dssp -SSSEEEEESS-------B--SS--TTE--------------EEEE---
T ss_pred cCCcEEEEeCCCCCCCCeEEECCchhhccccc-------cceEEeeeeC
Confidence 46789999999999999999998876554321 2239999997
No 26
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=97.14 E-value=0.005 Score=68.74 Aligned_cols=53 Identities=34% Similarity=0.663 Sum_probs=41.9
Q ss_pred EEEcCCCCCCCCceEE-eCChHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEE
Q psy10923 77 RVLKPVANCSGHGIRI-YRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYV 138 (520)
Q Consensus 77 WI~KP~~~srG~GI~l-~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVL 138 (520)
-|+||..|++|+||.+ +++.+++....+.... ....++||+||. | .|+|+.|+
T Consensus 334 vVVKP~~G~~G~Gv~v~v~~~~eL~~a~~~a~~-~~~~vlvEe~i~------G--~d~Rv~Vi 387 (547)
T TIGR03103 334 VVVKPVRGEQGKGISVDVRTPDDLEAAIAKARQ-FCDRVLLERYVP------G--EDLRLVVI 387 (547)
T ss_pred EEEEECCCCCCcCeEEecCCHHHHHHHHHHHHh-cCCcEEEEEecc------C--CeEEEEEE
Confidence 5999999999999998 8999988876654321 135799999996 3 49999765
No 27
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=97.13 E-value=0.0098 Score=62.94 Aligned_cols=57 Identities=23% Similarity=0.402 Sum_probs=43.2
Q ss_pred ceEEEcCCCCCCCCceEEeCChHHHHHHHhhccc----CCCCcceeeeccccccccccceeeeeEEE
Q psy10923 75 VVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN----LTCPRCVVQKYIEKPLLIHGVKFDLRVWY 137 (520)
Q Consensus 75 ~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~----~~~~~~VvQkYI~~PlLi~GrKFDlRvyV 137 (520)
..-|+||..++.|+|++++++.+++.+..+.+.+ +....++||+||. |.-|.+-+|+
T Consensus 150 ~PvIVKp~~g~ggkGv~i~~s~~El~~~~~~l~~~~~~~~~~~~iIEEfI~------G~e~sv~~f~ 210 (358)
T PRK13278 150 RPVIVKLPGAKGGRGYFIAKSPEEFKEKIDKLIERGLITEVEEAIIQEYVV------GVPYYFHYFY 210 (358)
T ss_pred CCEEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHhccccCCCCeEEEEecCC------CcEEEEEEEE
Confidence 4669999999999999999999998877665321 1257899999997 6655555443
No 28
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=97.11 E-value=0.006 Score=64.07 Aligned_cols=57 Identities=14% Similarity=0.216 Sum_probs=43.2
Q ss_pred cceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEEE
Q psy10923 74 NVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVI 139 (520)
Q Consensus 74 ~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVLv 139 (520)
+-.+|+||..++.+.||.++++.+++...++.... ....++||+||. |+ ++.+-|+.
T Consensus 171 ~~PvvVKP~~ggsS~GV~~v~~~~el~~a~~~~~~-~~~~vlVEefI~------G~--E~sv~vi~ 227 (347)
T PRK14572 171 GFPQFLKPVEGGSSVSTYKITNAEQLMTLLALIFE-SDSKVMSQSFLS------GT--EVSCGVLE 227 (347)
T ss_pred CCCEEEecCCCCCCCCEEEECCHHHHHHHHHHHHh-cCCCEEEEcCcc------cE--EEEEEEEe
Confidence 44789999999999999999999998877664321 245799999995 65 45555553
No 29
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=97.09 E-value=0.0042 Score=64.68 Aligned_cols=103 Identities=17% Similarity=0.121 Sum_probs=58.2
Q ss_pred eecCCcccCCccchHHhhHHHHHHHH--hhhcccCCCchhhhhhhhhhhhhcCCcceEEEcCCCCCCCCceEEeCChHHH
Q psy10923 22 VLKPVANCSGHGIRIYRQLEDIKRAI--GTLKNLTCPRCVVQKYIEKPLLIHGVNVVRVLKPVANCSGHGIRIYRQLEDI 99 (520)
Q Consensus 22 ~lkP~~~~~Grk~~L~~~l~~~~~~~--~~~~~~~~P~~~~~~~~~~~~~~~~~~~~WI~KP~~~srG~GI~l~~~~~~I 99 (520)
+-||..-+.|..+.+.... +-+.. ....+....+... .-...+...++.+-.-++||....-.-|+..++...+.
T Consensus 91 vg~gv~~Sa~~mdk~~~K~--~~~~~g~~~a~~~~~~~~~~-~~~~~e~~~~~l~~p~~Vkp~~~gSSvg~~~v~~~~d~ 167 (317)
T COG1181 91 VGKGVLASAGAMDKIVTKR--LFKAEGLPVAPYVALTRDEY-SSVIVEEVEEGLGFPLFVKPAREGSSVGRSPVNVEGDL 167 (317)
T ss_pred ecCchhhhhhcccHHHHHH--HHHHCCCCccceeeeecccc-hhHHHHHhhcccCCCEEEEcCCccceeeEEEeeeccch
Confidence 4577788888888776621 11111 1111111111100 01111223345666789999998778888888877776
Q ss_pred HHHHhh-cccCCCCcceeeeccccccccccceeeeeE
Q psy10923 100 KRAIGT-LKNLTCPRCVVQKYIEKPLLIHGVKFDLRV 135 (520)
Q Consensus 100 ~~~~~~-~~~~~~~~~VvQkYI~~PlLi~GrKFDlRv 135 (520)
....+. ... ++..++++||. |+++.+.+
T Consensus 168 ~~~~e~a~~~--d~~vl~e~~~~------~rei~v~v 196 (317)
T COG1181 168 QSALELAFKY--DRDVLREQGIT------GREIEVGV 196 (317)
T ss_pred HHHHHHHHHh--CCceeeccCCC------cceEEEEe
Confidence 654332 222 67889999987 66655544
No 30
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=96.91 E-value=0.028 Score=59.63 Aligned_cols=46 Identities=24% Similarity=0.474 Sum_probs=38.4
Q ss_pred CcceEEEcCCCC-CCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccc
Q psy10923 73 VNVVRVLKPVAN-CSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIE 121 (520)
Q Consensus 73 ~~~~WI~KP~~~-srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~ 121 (520)
-+-..|+||..+ +.|+|+.++++.+++....+.+. ...++||+||.
T Consensus 134 ~g~P~vlKp~~~g~~g~Gv~~v~~~~el~~a~~~~~---~~~~ivEe~I~ 180 (372)
T PRK06019 134 LGLPAVLKTRRGGYDGKGQWVIRSAEDLEAAWALLG---SVPCILEEFVP 180 (372)
T ss_pred cCCcEEEEeCCCCcCCCCeEEECCHHHHHHHHHhcC---CCCEEEEecCC
Confidence 455789999985 68999999999999988776542 46899999996
No 31
>KOG2157|consensus
Probab=96.90 E-value=0.00053 Score=74.90 Aligned_cols=115 Identities=15% Similarity=0.129 Sum_probs=76.7
Q ss_pred ccccceeecCCcccCCccchHHhhHHHHHHHHhhhcccCCCchhhhhhhhhhhhhcCCcceEEEcCCCCCCCCceEEeCC
Q psy10923 16 LLSCAWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVNVVRVLKPVANCSGHGIRIYRQ 95 (520)
Q Consensus 16 ~~~~~w~lkP~~~~~Grk~~L~~~l~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~WI~KP~~~srG~GI~l~~~ 95 (520)
+.+.+||+||++-++|+||.+++.++.|+...-.+. .+.+.. .+..|++.-- .-+...+...
T Consensus 197 ~~~~~wIvKP~~~srg~GI~~~~~l~~l~~~~~~~~-~~~s~~--------------~~~~~vv~~y---i~~plli~~~ 258 (497)
T KOG2157|consen 197 SERSWWIVKPASKSRGRGIFLFNTLSDLQAIVDSFD-SFISEN--------------NDEGYVVSAY---IDRPLLIGGH 258 (497)
T ss_pred cccceEEeccccccccceeEEecchhhhhhhhhccc-cccccc--------------ccccceeeee---ccCccccCCc
Confidence 779999999999999999999999999987763322 221111 1111121100 0000001111
Q ss_pred hHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEEEeeecCceEEEEecceEEeecCCCCC
Q psy10923 96 LEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIWVYHEGYVRFCSKPYSN 164 (520)
Q Consensus 96 ~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVLvts~~PL~vY~y~~g~vRfat~~Y~~ 164 (520)
.-+ -+.||++.|..+++++.-|++.+|+++.- ++| .+.+++ .++.+|...+..
T Consensus 259 KfD------------lR~~vlvt~~~pl~~y~yreg~lRf~t~~--y~~-~~nl~n-~~~HLtN~siqK 311 (497)
T KOG2157|consen 259 KFD------------LRQYVLVTHFDPLLLYRYREGFLRFSTEP--YGP-LVNLQN-MSVHLTNVSIQK 311 (497)
T ss_pred eee------------eeEEEEeecccchhheeeccceEEEEecc--Ccc-hhhhcc-cchhhhcccccc
Confidence 111 36899999999999999999999999986 557 778887 888887776654
No 32
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=96.74 E-value=0.032 Score=58.84 Aligned_cols=49 Identities=31% Similarity=0.477 Sum_probs=38.8
Q ss_pred CcceEEEcCCCCCCCCceEEeCChHHHHHHHhhccc---CCCCcceeeeccc
Q psy10923 73 VNVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN---LTCPRCVVQKYIE 121 (520)
Q Consensus 73 ~~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~---~~~~~~VvQkYI~ 121 (520)
-+-..|+||..++.|+|+.++++.+++....+.... .....++||+||+
T Consensus 135 ~g~P~VvKP~~g~~s~gv~~v~~~~el~~~~~~~~~~~~~~~~~~ivEe~i~ 186 (380)
T TIGR01142 135 IGYPCVVKPVMSSSGKGQSVVRGPEDIEKAWEYAQEGARGGAGRVIVEEFID 186 (380)
T ss_pred cCCCEEEEECCCcCCCCeEEECCHHHHHHHHHHHHhhccCCCCCEEEEEecC
Confidence 345789999999999999999999999877664321 1135799999996
No 33
>PRK07206 hypothetical protein; Provisional
Probab=96.71 E-value=0.025 Score=60.49 Aligned_cols=47 Identities=26% Similarity=0.372 Sum_probs=37.5
Q ss_pred ceEEEcCCCCCCCCceEEeCChHHHHHHHhhccc------CCCCcceeeeccc
Q psy10923 75 VVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN------LTCPRCVVQKYIE 121 (520)
Q Consensus 75 ~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~------~~~~~~VvQkYI~ 121 (520)
...|+||..++.|+|+.++++.+++.+..+.... .....++||+||+
T Consensus 147 ~P~VvKP~~g~gs~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~i~ 199 (416)
T PRK07206 147 RPVVIKPLESAGSDGVFICPAKGDWKHAFNAILGKANKLGLVNETVLVQEYLI 199 (416)
T ss_pred CCEEEeCCCCCCCCCEEEeCCHHHHHHHHHHHHhccccCCCCCCeEEEEEccc
Confidence 3789999999999999999999998877654321 1135799999996
No 34
>PLN02257 phosphoribosylamine--glycine ligase
Probab=96.66 E-value=0.026 Score=61.25 Aligned_cols=48 Identities=19% Similarity=0.323 Sum_probs=37.1
Q ss_pred cceEEEcCCCCCCCCceEEeCChHHHHHHHhhccc-----CCCCcceeeeccc
Q psy10923 74 NVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-----LTCPRCVVQKYIE 121 (520)
Q Consensus 74 ~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~-----~~~~~~VvQkYI~ 121 (520)
+-.-|+||..++.|+|+.++.+.+++.+.+..+.. .....+|||+||.
T Consensus 137 g~PvVVKp~~~~~GkGV~iv~~~~el~~a~~~~~~~~~fg~~~~~vlIEefi~ 189 (434)
T PLN02257 137 GAPIVVKADGLAAGKGVVVAMTLEEAYEAVDSMLVKGAFGSAGSEVVVEEFLD 189 (434)
T ss_pred CCCEEEEcCCCCCCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC
Confidence 34679999999999999999999998776654310 1135789999997
No 35
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=96.62 E-value=0.0017 Score=61.92 Aligned_cols=80 Identities=21% Similarity=0.257 Sum_probs=40.8
Q ss_pred cCCCchhhhhhhh-hhhhhcCCcceEEEcCCCCCCCCceEEeCCh-HHHHHHHhhcccCCCCcceeeeccccccccccce
Q psy10923 53 LTCPRCVVQKYIE-KPLLIHGVNVVRVLKPVANCSGHGIRIYRQL-EDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVK 130 (520)
Q Consensus 53 ~~~P~~~~~~~~~-~~~~~~~~~~~WI~KP~~~srG~GI~l~~~~-~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrK 130 (520)
.++|.|.+..-.+ -..+.+..+. ||+||..+..|+|++.++.- ..+...++.+.....+++++|+||..- -+|
T Consensus 10 ~~~P~T~vs~~~~~i~~f~~~~~~-~VlKPl~g~gG~gV~~i~~~~~n~~~i~e~~~~~~~~~~mvQ~flp~i--~~G-- 84 (173)
T PF02955_consen 10 ELIPPTLVSRDKEEIRAFIEEHGD-IVLKPLDGMGGRGVFRISRDDPNLNSILETLTKNGERPVMVQPFLPEI--KEG-- 84 (173)
T ss_dssp CCS--EEEES-HHHHHHHHHHHSS-EEEEESS--TTTT-EEE-TT-TTHHHHHHHHTTTTTS-EEEEE--GGG--GG---
T ss_pred ccCcCEEEECCHHHHHHHHHHCCC-EEEEECCCCCCcCEEEEcCCCCCHHHHHHHHHhcCCccEEEEeccccc--cCC--
Confidence 5678877643221 1111222222 99999999999999999762 223333333333235679999999872 366
Q ss_pred eeeeEEEE
Q psy10923 131 FDLRVWYV 138 (520)
Q Consensus 131 FDlRvyVL 138 (520)
|.|+.++
T Consensus 85 -DkRii~~ 91 (173)
T PF02955_consen 85 -DKRIILF 91 (173)
T ss_dssp -EEEEEEE
T ss_pred -CEEEEEE
Confidence 7788775
No 36
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=96.56 E-value=0.059 Score=57.87 Aligned_cols=48 Identities=17% Similarity=0.347 Sum_probs=37.1
Q ss_pred cce-EEEcCCCCCCCCceEEeCChHHHHHHHhhcccC----CCCcceeeeccc
Q psy10923 74 NVV-RVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNL----TCPRCVVQKYIE 121 (520)
Q Consensus 74 ~~~-WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~----~~~~~VvQkYI~ 121 (520)
+-. +|+||..++.|+|+.++++.+++....+..... ....++||+||+
T Consensus 139 g~P~~VvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~g~~~~~~lvEe~i~ 191 (423)
T TIGR00877 139 GAPAIVVKADGLAAGKGVIVAKTNEEAIKAVEEILEQKFGDAGERVVIEEFLD 191 (423)
T ss_pred CCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHhcCCCCCeEEEEECcc
Confidence 345 899999999999999999999987766543210 135799999996
No 37
>PRK06524 biotin carboxylase-like protein; Validated
Probab=96.55 E-value=0.036 Score=60.79 Aligned_cols=46 Identities=22% Similarity=0.144 Sum_probs=37.3
Q ss_pred cceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccc
Q psy10923 74 NVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIE 121 (520)
Q Consensus 74 ~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~ 121 (520)
+-.-++||..++.|.|+.++.+.+++..+.+.... ....+||+||.
T Consensus 181 GyPvVVKP~~GGSS~GV~~Vkn~eELe~a~~~~~~--~~~viVEe~I~ 226 (493)
T PRK06524 181 GDDLVVQTPYGDSGSTTFFVRGQRDWDKYAGGIVG--QPEIKVMKRIR 226 (493)
T ss_pred CCcEEEEECCCCCCcCEEEeCCHHHHHHHHHHhcC--CCCEEEEeccC
Confidence 34579999999999999999999999887765432 34679999984
No 38
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=96.52 E-value=0.034 Score=60.22 Aligned_cols=48 Identities=19% Similarity=0.328 Sum_probs=37.7
Q ss_pred cceEEEcCCCCCCCCceEEeCChHHHHHHHhhccc-----CCCCcceeeeccc
Q psy10923 74 NVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-----LTCPRCVVQKYIE 121 (520)
Q Consensus 74 ~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~-----~~~~~~VvQkYI~ 121 (520)
+-..|+||..++.|+|+.++.+.+++.+..+.+.. .....+|||+||+
T Consensus 143 ~~PvVVKp~~~~~gkGV~vv~~~eel~~a~~~~~~~~~~g~~~~~vlIEEfl~ 195 (426)
T PRK13789 143 MLPIVIKADGLAAGKGVTVATEKKMAKRALKEIFKDKKFGQSGNQVVIEEFME 195 (426)
T ss_pred CCCEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECcC
Confidence 44789999999999999999999998877664321 0124789999997
No 39
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=96.46 E-value=0.066 Score=56.78 Aligned_cols=49 Identities=31% Similarity=0.485 Sum_probs=38.6
Q ss_pred CcceEEEcCCCCCCCCceEEeCChHHHHHHHhhccc---CCCCcceeeeccc
Q psy10923 73 VNVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN---LTCPRCVVQKYIE 121 (520)
Q Consensus 73 ~~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~---~~~~~~VvQkYI~ 121 (520)
.+-..|+||..++.|+|+.++++.+++.+..+.... .....+|||+||+
T Consensus 148 ~g~P~VvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEefi~ 199 (395)
T PRK09288 148 IGYPCVVKPVMSSSGKGQSVVRSPEDIEKAWEYAQEGGRGGAGRVIVEEFID 199 (395)
T ss_pred cCCCEEEEeCCCcCCCCeEEECCHHHHHHHHHHHHhhccccCCCEEEEEecC
Confidence 345789999999999999999999998877654321 0135799999996
No 40
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=96.44 E-value=0.081 Score=56.90 Aligned_cols=48 Identities=21% Similarity=0.369 Sum_probs=37.9
Q ss_pred cceEEEcCCCCCCCCceEEeCChHHHHHHHhhccc-----CCCCcceeeeccc
Q psy10923 74 NVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-----LTCPRCVVQKYIE 121 (520)
Q Consensus 74 ~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~-----~~~~~~VvQkYI~ 121 (520)
+-..|+||..++.|+|+.++.+.+++....+.+.. .....++||+||.
T Consensus 137 ~~P~VvKP~~~~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~ 189 (420)
T PRK00885 137 GAPIVVKADGLAAGKGVVVAMTLEEAKAAVDDMLAGNKFGDAGARVVIEEFLD 189 (420)
T ss_pred CCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHhhcccccCCCCeEEEEEccC
Confidence 44679999999999999999999998877664321 0135799999996
No 41
>PRK08462 biotin carboxylase; Validated
Probab=96.43 E-value=0.056 Score=58.55 Aligned_cols=51 Identities=18% Similarity=0.292 Sum_probs=38.6
Q ss_pred CCcceEEEcCCCCCCCCceEEeCChHHHHHHHhhc-----ccCCCCcceeeecccc
Q psy10923 72 GVNVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTL-----KNLTCPRCVVQKYIEK 122 (520)
Q Consensus 72 ~~~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~-----~~~~~~~~VvQkYI~~ 122 (520)
..+-.+|+||..++.|+|+.++++.+++....... .......++||+||..
T Consensus 152 ~~g~PvvvKP~~g~gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~g 207 (445)
T PRK08462 152 EIGYPVILKAAAGGGGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFINN 207 (445)
T ss_pred HcCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCCC
Confidence 34557999999999999999999999988765321 1111346899999974
No 42
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=96.42 E-value=0.052 Score=65.47 Aligned_cols=61 Identities=23% Similarity=0.339 Sum_probs=44.6
Q ss_pred CcceEEEcCCCCCCCCceEEeCChHHHHHHHhhccc-----CCCCcceeeeccccccccccceeeeeEEEEEe
Q psy10923 73 VNVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-----LTCPRCVVQKYIEKPLLIHGVKFDLRVWYVIT 140 (520)
Q Consensus 73 ~~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~-----~~~~~~VvQkYI~~PlLi~GrKFDlRvyVLvt 140 (520)
.+-.+|+||..++.|+|+.++++.+++....+.... -....++||+||+.| -++.+-++..
T Consensus 151 iGyPvIVKP~~GGGGrG~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~g~-------reIeVqVlgD 216 (1143)
T TIGR01235 151 IGYPVIIKASWGGGGRGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIERP-------RHIEVQLLGD 216 (1143)
T ss_pred cCCCEEEEECCCCCCCccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCCC-------eEEEEEEEEe
Confidence 345789999999999999999999998876553211 014579999999864 2566666643
No 43
>PRK05246 glutathione synthetase; Provisional
Probab=96.39 E-value=0.0034 Score=65.12 Aligned_cols=55 Identities=22% Similarity=0.255 Sum_probs=38.5
Q ss_pred eEEEcCCCCCCCCceEEeCCh----HHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEE
Q psy10923 76 VRVLKPVANCSGHGIRIYRQL----EDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYV 138 (520)
Q Consensus 76 ~WI~KP~~~srG~GI~l~~~~----~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVL 138 (520)
.-|+||..|++|+||..+... ..+....... ...++++|+||+.+- + -|+|++|+
T Consensus 156 ~vVlKP~~G~~G~gV~~i~~~~~~~~~~~~~l~~~---~~~~~lvQ~~I~~~~--~---~D~Rv~vv 214 (316)
T PRK05246 156 DIILKPLDGMGGAGIFRVKADDPNLGSILETLTEH---GREPVMAQRYLPEIK--E---GDKRILLV 214 (316)
T ss_pred CEEEEECCCCCccceEEEeCCCccHHHHHHHHHHc---cCCeEEEEeccccCC--C---CCEEEEEE
Confidence 569999999999999999532 2233333221 246899999997532 2 39999876
No 44
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=96.34 E-value=0.057 Score=57.49 Aligned_cols=58 Identities=22% Similarity=0.363 Sum_probs=43.7
Q ss_pred CcceEEEcCCCCCCCCceEEeCChHHHHHHHhhcc-cCCCCcceeeeccccccccccceeeeeEE
Q psy10923 73 VNVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLK-NLTCPRCVVQKYIEKPLLIHGVKFDLRVW 136 (520)
Q Consensus 73 ~~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~-~~~~~~~VvQkYI~~PlLi~GrKFDlRvy 136 (520)
.+-..|+||..++.|+|+.++.+.+++....+.+. ......+|||+||+ |.-+.+.++
T Consensus 101 ~g~PvVvKp~~~~~gkGV~iv~~~~el~~a~~~~~~~~~~~~vlvEe~i~------G~E~sv~~~ 159 (379)
T PRK13790 101 CELPVVVKKDGLAAGKGVIIADTIEAARSAIEIMYGDEEEGTVVFETFLE------GEEFSLMTF 159 (379)
T ss_pred cCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhcCCCCeEEEEEccc------CceEEEEEE
Confidence 34578999999999999999999999887776432 11235799999996 556666554
No 45
>PRK14016 cyanophycin synthetase; Provisional
Probab=96.29 E-value=0.024 Score=65.43 Aligned_cols=56 Identities=27% Similarity=0.462 Sum_probs=43.6
Q ss_pred cceEEEcCCCCCCCCceEE-eCChHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEE
Q psy10923 74 NVVRVLKPVANCSGHGIRI-YRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYV 138 (520)
Q Consensus 74 ~~~WI~KP~~~srG~GI~l-~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVL 138 (520)
+-.-|+||..++.|+|+.+ +++.+++....+.... ....++||+||. | .|+|++|+
T Consensus 249 G~PvVVKP~~G~~G~GV~~~v~~~~el~~a~~~a~~-~~~~viVEe~I~------G--~d~Rv~Vv 305 (727)
T PRK14016 249 GYPVVVKPLDGNHGRGVTVNITTREEIEAAYAVASK-ESSDVIVERYIP------G--KDHRLLVV 305 (727)
T ss_pred CCCEEEEECCCCCCCceEEecCCHHHHHHHHHHHHH-hCCeEEEEEecC------C--ceEEEEEE
Confidence 3456999999999999998 8999998877654321 146799999995 3 48898765
No 46
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=96.28 E-value=0.046 Score=57.78 Aligned_cols=57 Identities=14% Similarity=0.207 Sum_probs=43.0
Q ss_pred cceEEEcCCCCCC--CCceEEeCChHHHHHHHhhccc------CCCCcceeeeccccccccccceeeeeEE
Q psy10923 74 NVVRVLKPVANCS--GHGIRIYRQLEDIKRAIGTLKN------LTCPRCVVQKYIEKPLLIHGVKFDLRVW 136 (520)
Q Consensus 74 ~~~WI~KP~~~sr--G~GI~l~~~~~~I~~~~~~~~~------~~~~~~VvQkYI~~PlLi~GrKFDlRvy 136 (520)
+...|+||..+++ |+|++++++.+++....+.+.+ .....++||+||. |.-|.+-+|
T Consensus 152 d~PVIVKp~~asG~~srG~f~a~s~eEl~~~a~~l~~~g~I~~~~~~~~iIQEyI~------G~ey~~d~F 216 (366)
T PRK13277 152 DRPVIVKLPEAKRRLERGFFTASSYEDFYEKSEELIKAGVIDREDLKNARIEEYVI------GAHFNFNYF 216 (366)
T ss_pred CccEEEEECCCCCccccCeEeeCCHHHHHHHHHhhhhcCcccccccccceeEeccC------CCEEEEEEE
Confidence 4567999999999 9999999999998877654331 1224567999996 666666555
No 47
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=96.25 E-value=0.069 Score=58.03 Aligned_cols=49 Identities=22% Similarity=0.470 Sum_probs=38.2
Q ss_pred cceEEEcCCCCCCCCceEEeCChHHHHHHHhhcc-----cCCCCcceeeecccc
Q psy10923 74 NVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLK-----NLTCPRCVVQKYIEK 122 (520)
Q Consensus 74 ~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~-----~~~~~~~VvQkYI~~ 122 (520)
+-.+|+||..++.|+|+.++++.+++....+... ......++||+||+.
T Consensus 152 g~PvvvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g 205 (449)
T TIGR00514 152 GYPVIIKATAGGGGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIEN 205 (449)
T ss_pred CCCEEEEeCCCCCCCccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 4468999999999999999999999887765321 012457999999974
No 48
>PRK02186 argininosuccinate lyase; Provisional
Probab=96.17 E-value=0.056 Score=63.82 Aligned_cols=59 Identities=19% Similarity=0.360 Sum_probs=45.5
Q ss_pred CcceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEE
Q psy10923 73 VNVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWY 137 (520)
Q Consensus 73 ~~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyV 137 (520)
.+-.+|+||..++.|+|+.++++.+++....+.+.......++||+||+ |.-|++-.++
T Consensus 141 ~~~PvVVKP~~g~gS~GV~~v~~~~el~~a~~~~~~~~~~~~lvEEfI~------G~E~sVe~i~ 199 (887)
T PRK02186 141 LTYPVVVKPRMGSGSVGVRLCASVAEAAAHCAALRRAGTRAALVQAYVE------GDEYSVETLT 199 (887)
T ss_pred CCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHhcCCCcEEEeeccc------CCcEEEEEEE
Confidence 3456899999999999999999999998877654332356899999996 5556665543
No 49
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=96.16 E-value=0.034 Score=63.89 Aligned_cols=54 Identities=24% Similarity=0.517 Sum_probs=40.0
Q ss_pred eEEEcCCCCCCCCceEEeCC---hHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEE
Q psy10923 76 VRVLKPVANCSGHGIRIYRQ---LEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYV 138 (520)
Q Consensus 76 ~WI~KP~~~srG~GI~l~~~---~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVL 138 (520)
.-|+||..++.|.||.++.+ .+++.+.+...-+ ....++||+||. | -|+|+.|+
T Consensus 513 PVVVKP~~g~~G~GVsi~~~~~~~eel~~Al~~A~~-~~~~VLVEefI~------G--~EyRv~VI 569 (737)
T TIGR01435 513 AIVVKPKSTNYGLGITIFKNGFTLEDFQEALNIAFS-EDSSVIIEEFLP------G--TEYRFFVL 569 (737)
T ss_pred CEEEeeCCCCCcCCeEEecCcCCHHHHHHHHHHHHh-cCCeEEEEeccc------C--CEEEEEEE
Confidence 45999999999999999876 5666555442211 255799999995 5 48898776
No 50
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=96.02 E-value=0.12 Score=56.83 Aligned_cols=50 Identities=24% Similarity=0.435 Sum_probs=38.5
Q ss_pred CcceEEEcCCCCCCCCceEEeCChHHHHHHHhhcc-----cCCCCcceeeecccc
Q psy10923 73 VNVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLK-----NLTCPRCVVQKYIEK 122 (520)
Q Consensus 73 ~~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~-----~~~~~~~VvQkYI~~ 122 (520)
.+-..|+||..++.|+||.++++.+++....+... ......++||+||+.
T Consensus 151 igyPvvvKP~~ggGg~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~~ 205 (478)
T PRK08463 151 IGYPVILKASGGGGGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVVN 205 (478)
T ss_pred hCCCEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCC
Confidence 34568999999999999999999999877655211 112467899999964
No 51
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=95.98 E-value=0.067 Score=64.41 Aligned_cols=50 Identities=14% Similarity=0.269 Sum_probs=39.7
Q ss_pred CcceEEEcCCCCCCCCceEEeCChHHHHHHHhhccc-CCCCcceeeecccc
Q psy10923 73 VNVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-LTCPRCVVQKYIEK 122 (520)
Q Consensus 73 ~~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~-~~~~~~VvQkYI~~ 122 (520)
.+-.+|+||..++.|+|+.++.+.+++..+.+.... ....+++||+||+.
T Consensus 703 igyPvvVKP~~~~Gg~Gv~iv~~~eeL~~~~~~a~~~s~~~~vlIEefI~G 753 (1066)
T PRK05294 703 IGYPVLVRPSYVLGGRAMEIVYDEEELERYMREAVKVSPDHPVLIDKFLEG 753 (1066)
T ss_pred cCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhCCCCcEEEEecCCC
Confidence 345799999999999999999999999887664221 22567999999974
No 52
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=95.97 E-value=0.12 Score=56.00 Aligned_cols=49 Identities=22% Similarity=0.342 Sum_probs=38.2
Q ss_pred cceEEEcCCCCCCCCceEEeCChHHHHHHHhhcc-----cCCCCcceeeecccc
Q psy10923 74 NVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLK-----NLTCPRCVVQKYIEK 122 (520)
Q Consensus 74 ~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~-----~~~~~~~VvQkYI~~ 122 (520)
+-.+|+||..++.|+|+.++++.+++....+... ......++||+||..
T Consensus 152 ~~P~VvKP~~g~gs~Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~g 205 (450)
T PRK06111 152 GYPVMLKASAGGGGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIED 205 (450)
T ss_pred CCCEEEEeCCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccCC
Confidence 4578999999999999999999999887765321 012457999999973
No 53
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=95.74 E-value=0.12 Score=56.50 Aligned_cols=50 Identities=14% Similarity=0.311 Sum_probs=38.1
Q ss_pred CcceEEEcCCCCCCCCceEEeCChHHHHHHHhhccc-----CCCCcceeeecccc
Q psy10923 73 VNVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-----LTCPRCVVQKYIEK 122 (520)
Q Consensus 73 ~~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~-----~~~~~~VvQkYI~~ 122 (520)
.+-..|+||..++.|+|+.++++.+++....+.... -....++||+||+.
T Consensus 154 igyPvvvKp~~gggg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~ 208 (467)
T PRK12833 154 IGYPLMIKAAAGGGGRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIAR 208 (467)
T ss_pred hCCCEEEEECCCCCCCeEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCC
Confidence 345789999999999999999999998876542110 01456899999974
No 54
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=95.60 E-value=0.075 Score=61.56 Aligned_cols=54 Identities=28% Similarity=0.506 Sum_probs=39.5
Q ss_pred eEEEcCCCCCCCCceEEeC---ChHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEE
Q psy10923 76 VRVLKPVANCSGHGIRIYR---QLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYV 138 (520)
Q Consensus 76 ~WI~KP~~~srG~GI~l~~---~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVL 138 (520)
.-|+||..++.|+||.++. +.+++.+.+...-+ ....++||+||. |+ |+|+.|+
T Consensus 526 PvVVKP~~g~~G~GV~~~~~~~~~eel~~A~~~a~~-~~~~vlVEEfI~------G~--E~Rv~Vi 582 (752)
T PRK02471 526 AIVVKPKSTNFGLGISIFKEPASLEDYEKALEIAFR-EDSSVLVEEFIV------GT--EYRFFVL 582 (752)
T ss_pred CEEEEECCCCCcCCeEEecCcCCHHHHHHHHHHHHh-cCCcEEEEeccc------CC--EEEEEEE
Confidence 5699999999999999874 46666655543211 245799999995 54 8888765
No 55
>PRK12999 pyruvate carboxylase; Reviewed
Probab=95.55 E-value=0.21 Score=60.58 Aligned_cols=50 Identities=28% Similarity=0.458 Sum_probs=38.8
Q ss_pred CcceEEEcCCCCCCCCceEEeCChHHHHHHHhhccc-----CCCCcceeeecccc
Q psy10923 73 VNVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-----LTCPRCVVQKYIEK 122 (520)
Q Consensus 73 ~~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~-----~~~~~~VvQkYI~~ 122 (520)
.+-.+|+||..++.|+|+.++++.+++....+...+ -....++||+||+.
T Consensus 155 iGyPvVVKP~~GgGGrGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~g 209 (1146)
T PRK12999 155 IGYPIMLKASAGGGGRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVEN 209 (1146)
T ss_pred hCCCEEEEECCCCCCCCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCC
Confidence 345799999999999999999999998776553211 01457999999974
No 56
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=95.51 E-value=0.14 Score=60.33 Aligned_cols=56 Identities=25% Similarity=0.409 Sum_probs=43.2
Q ss_pred cceEEEcCCCCCCCCceEE-eCChHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEE
Q psy10923 74 NVVRVLKPVANCSGHGIRI-YRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYV 138 (520)
Q Consensus 74 ~~~WI~KP~~~srG~GI~l-~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVL 138 (520)
+-..++||..++.|+|+.+ +.+.+++.+..+.... ....++||+||. | -|+|++|+
T Consensus 248 g~PvVVKP~~g~~G~GV~l~v~s~~el~~a~~~a~~-~~~~vlVEefI~------G--~e~rvlVv 304 (864)
T TIGR02068 248 GYPVVIKPYDGNHGRGVTINILTRDEIESAYEAAVE-ESSGVIVERFIT------G--RDHRLLVV 304 (864)
T ss_pred CCCEEEEECCCCCccCEEEEeCCHHHHHHHHHHHHh-hCCcEEEEEecc------C--CEEEEEEE
Confidence 3467999999999999998 8999998876654321 245799999995 5 47888664
No 57
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=95.50 E-value=0.014 Score=60.50 Aligned_cols=55 Identities=24% Similarity=0.304 Sum_probs=38.1
Q ss_pred eEEEcCCCCCCCCceEEeCCh----HHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEE
Q psy10923 76 VRVLKPVANCSGHGIRIYRQL----EDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYV 138 (520)
Q Consensus 76 ~WI~KP~~~srG~GI~l~~~~----~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVL 138 (520)
.-|+||..|++|+|++.++.. ..+....... ...++++|+||.. +.+ -|+|++|+
T Consensus 155 ~vVvKPl~G~~G~gv~~v~~~~~~~~~~~~~~~~~---~~~~~~vQ~yI~~---~~~--~D~Rv~vv 213 (312)
T TIGR01380 155 DIVLKPLDGMGGEGIFRLDPGDPNFNSILETMTQR---GREPVMAQRYLPE---IKE--GDKRILLI 213 (312)
T ss_pred CEEEEECCCCCCceEEEEcCCCccHHHHHHHHHhc---cCCcEEEEecccc---ccC--CCEEEEEE
Confidence 469999999999999988642 2222322221 1458999999975 222 49999886
No 58
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=95.44 E-value=0.16 Score=55.02 Aligned_cols=49 Identities=22% Similarity=0.483 Sum_probs=38.0
Q ss_pred cceEEEcCCCCCCCCceEEeCChHHHHHHHhhccc-----CCCCcceeeecccc
Q psy10923 74 NVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-----LTCPRCVVQKYIEK 122 (520)
Q Consensus 74 ~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~-----~~~~~~VvQkYI~~ 122 (520)
+-.+|+||..++.|+|+.++++.+++.+..+.... .....++||+||..
T Consensus 152 g~PvvvKP~~g~gs~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g 205 (451)
T PRK08591 152 GYPVIIKATAGGGGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLEN 205 (451)
T ss_pred CCCEEEEECCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCC
Confidence 44689999999999999999999998877654211 01356899999973
No 59
>PRK05586 biotin carboxylase; Validated
Probab=95.42 E-value=0.24 Score=53.82 Aligned_cols=49 Identities=31% Similarity=0.445 Sum_probs=37.3
Q ss_pred cceEEEcCCCCCCCCceEEeCChHHHHHHHhhccc-----CCCCcceeeecccc
Q psy10923 74 NVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-----LTCPRCVVQKYIEK 122 (520)
Q Consensus 74 ~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~-----~~~~~~VvQkYI~~ 122 (520)
+-.-|+||..++.|+|+.++++.+++.+..+.... -....++||+||..
T Consensus 152 gyPvvvKP~~gggg~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~g 205 (447)
T PRK05586 152 GYPVMVKASAGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIEN 205 (447)
T ss_pred CCCEEEEECCCCCCCeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCC
Confidence 44679999999999999999999998776542110 01357899999963
No 60
>PRK12458 glutathione synthetase; Provisional
Probab=95.42 E-value=0.019 Score=60.36 Aligned_cols=55 Identities=16% Similarity=0.377 Sum_probs=39.5
Q ss_pred EEEcCCCCCCCCceEEeCChHH--HHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEE
Q psy10923 77 RVLKPVANCSGHGIRIYRQLED--IKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYV 138 (520)
Q Consensus 77 WI~KP~~~srG~GI~l~~~~~~--I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVL 138 (520)
.|+||..|+.|+||+++.+.+. +...++.+.. ..++++|+||..+ . ..|+|++|+
T Consensus 165 vVvKPl~G~gG~gV~~v~~~~~~~~~~ile~~~~--~~~~ivQeyI~~~---~--~gDiRv~vv 221 (338)
T PRK12458 165 MILKPLQGSGGQGVFLIEKSAQSNLNQILEFYSG--DGYVIAQEYLPGA---E--EGDVRILLL 221 (338)
T ss_pred EEEEECCCCCccCeEEEecCChhhHHHHHHHHhh--CCCEEEEEcccCC---C--CCCEEEEEE
Confidence 7999999999999999975442 3333332222 4589999999753 2 369999974
No 61
>PRK06849 hypothetical protein; Provisional
Probab=95.41 E-value=0.15 Score=54.24 Aligned_cols=44 Identities=18% Similarity=0.195 Sum_probs=32.7
Q ss_pred cceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccc
Q psy10923 74 NVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIE 121 (520)
Q Consensus 74 ~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~ 121 (520)
+..+|+||..++.|+|+.++.+.+.+... ......++|||+||.
T Consensus 152 ~~P~vlKP~~~~~~~~v~~~~~~~~l~~~----~~~~~~~~ivQe~I~ 195 (389)
T PRK06849 152 HTPYVLKPIYSRFVRRVDLLPKEAALKEL----PISKDNPWVMQEFIQ 195 (389)
T ss_pred CCcEEEEeCcccCCCeEEEecCHHHhccc----ccCCCCCeEEEEEec
Confidence 56889999999999999998885544322 111234699999997
No 62
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=95.30 E-value=0.21 Score=54.73 Aligned_cols=50 Identities=18% Similarity=0.319 Sum_probs=37.4
Q ss_pred CcceEEEcCCCCCCCCceEEeCChHHHHHHHhhccc-----CCCCcceeeecccc
Q psy10923 73 VNVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-----LTCPRCVVQKYIEK 122 (520)
Q Consensus 73 ~~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~-----~~~~~~VvQkYI~~ 122 (520)
.+-..|+||..++.|+|+.++++.+++....+.... ......++++||..
T Consensus 150 igyPvvvKp~~ggGg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~~ 204 (472)
T PRK07178 150 IGYPVMLKATSGGGGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVN 204 (472)
T ss_pred cCCcEEEEeCCCCCCCCceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCC
Confidence 345689999999999999999999998876542110 11346889999864
No 63
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=95.28 E-value=0.47 Score=53.51 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=36.1
Q ss_pred cceEEEcCCCCC-CCCceEEeCChHHHHHHHhhcccCCCCcceeeeccc
Q psy10923 74 NVVRVLKPVANC-SGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIE 121 (520)
Q Consensus 74 ~~~WI~KP~~~s-rG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~ 121 (520)
+-..|+||..++ .|+|+.++++.+++....+...+ ....++|++||.
T Consensus 156 g~P~VvKP~~ggs~g~Gv~~v~~~~eL~~a~~~~~~-~~~~vlvEefI~ 203 (577)
T PLN02948 156 GYPLMLKSRRLAYDGRGNAVAKTEEDLSSAVAALGG-FERGLYAEKWAP 203 (577)
T ss_pred CCcEEEEeCCCCCCCCCeEEECCHHHHHHHHHHhhC-CCCcEEEEecCC
Confidence 446799999765 79999999999998877664321 135789999984
No 64
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.22 E-value=0.08 Score=61.91 Aligned_cols=47 Identities=13% Similarity=0.039 Sum_probs=36.8
Q ss_pred cceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccc
Q psy10923 74 NVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIE 121 (520)
Q Consensus 74 ~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~ 121 (520)
+-.-|+||..+..|.||.++.+.+++.+.++..-. .....+|++||.
T Consensus 610 g~P~iVKP~~~GsS~Gv~~v~~~~el~~a~~~a~~-~~~~vlVEe~i~ 656 (809)
T PRK14573 610 SFPMFVKTAHLGSSIGVFEVHNVEELRDKISEAFL-YDTDVFVEESRL 656 (809)
T ss_pred CCCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHh-cCCcEEEEeccC
Confidence 34579999999999999999999999887764321 245688888874
No 65
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=95.03 E-value=0.27 Score=59.25 Aligned_cols=59 Identities=17% Similarity=0.297 Sum_probs=45.1
Q ss_pred CcceEEEcCCCCCCCCceEEeCChHHHHHHHhhcc-cCCCCcceeeeccccccccccceeeeeEE
Q psy10923 73 VNVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLK-NLTCPRCVVQKYIEKPLLIHGVKFDLRVW 136 (520)
Q Consensus 73 ~~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~-~~~~~~~VvQkYI~~PlLi~GrKFDlRvy 136 (520)
.+-.+|+||..+..|+|+.++.+.+++..+.+... .+...+++||+||+. |+-+++.++
T Consensus 703 igyPvIVKP~~~~Gg~gv~iv~~~eeL~~~l~~a~~~s~~~~vlVeefI~~-----G~E~~Vd~l 762 (1050)
T TIGR01369 703 IGYPVLVRPSYVLGGRAMEIVYNEEELRRYLEEAVEVSPEHPVLIDKYLED-----AVEVDVDAV 762 (1050)
T ss_pred cCCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHHhCCCCCEEEeecCCC-----CeEEEEEEE
Confidence 34568999999999999999999999988776432 122467999999974 666666543
No 66
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=95.01 E-value=0.25 Score=53.67 Aligned_cols=46 Identities=13% Similarity=0.203 Sum_probs=31.1
Q ss_pred ceEEEcCCCCCCCCceEEeC----ChHHHHHHHhhcccCCCCcceeeeccc
Q psy10923 75 VVRVLKPVANCSGHGIRIYR----QLEDIKRAIGTLKNLTCPRCVVQKYIE 121 (520)
Q Consensus 75 ~~WI~KP~~~srG~GI~l~~----~~~~I~~~~~~~~~~~~~~~VvQkYI~ 121 (520)
-.-|+||..++.|+|+.++. +.++......... .....+|||+||+
T Consensus 142 ~PvVVKP~~~sggkGV~v~~~~~~~~~ea~~~~~~~~-~~~~~viIEEfl~ 191 (435)
T PRK06395 142 KDVAVKPIGLTGGKGVKVTGEQLNSVDEAIRYAIEIL-DRDGVVLIEKKMT 191 (435)
T ss_pred CCEEEEeCCCCCCCCeEEecCchhhHHHHHHHHHHHh-CCCCcEEEEeecC
Confidence 35799999999999999994 3344333222221 1145799999996
No 67
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=94.34 E-value=0.49 Score=57.06 Aligned_cols=48 Identities=17% Similarity=0.210 Sum_probs=37.2
Q ss_pred cceEEEcCCCCCCCCceEEeCChHHHHHHHhhccc-CCCCcceeeeccc
Q psy10923 74 NVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-LTCPRCVVQKYIE 121 (520)
Q Consensus 74 ~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~-~~~~~~VvQkYI~ 121 (520)
+-..|+||..+..|+|+.++.+.+++......... +....++||+||.
T Consensus 162 gyPvIVKP~~g~gg~Gv~iv~~~eeL~~~~~~~~~~s~~~~vlVEe~I~ 210 (1050)
T TIGR01369 162 GYPVIVRPAFTLGGTGGGIAYNREELKEIAERALSASPINQVLVEKSLA 210 (1050)
T ss_pred CCCeEEECCCCCCCCCeEEECCHHHHHHHHHHHHhcCCCCcEEEEEccc
Confidence 34679999999999999999999998876543221 1125799999996
No 68
>PLN02735 carbamoyl-phosphate synthase
Probab=94.03 E-value=0.51 Score=57.15 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=38.5
Q ss_pred cceEEEcCCCCCCCCceEEeCChHHHHHHHhhccc-CCCCcceeeecccc
Q psy10923 74 NVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-LTCPRCVVQKYIEK 122 (520)
Q Consensus 74 ~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~-~~~~~~VvQkYI~~ 122 (520)
+-.-|+||..+..|+|+.++.+.+++....+.... ....+++||+||+.
T Consensus 737 GyPvvVKP~~g~gG~G~~iV~~~eeL~~al~~a~~~~~~~~vlVEefI~~ 786 (1102)
T PLN02735 737 GYPVVVRPSYVLGGRAMEIVYSDDKLKTYLETAVEVDPERPVLVDKYLSD 786 (1102)
T ss_pred CCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHHhcCCCCEEEEEecCC
Confidence 34579999999999999999999999887764321 12357999999963
No 69
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=93.75 E-value=0.77 Score=55.50 Aligned_cols=47 Identities=13% Similarity=0.219 Sum_probs=36.8
Q ss_pred ceEEEcCCCCCCCCceEEeCChHHHHHHHhh-cccCCCCcceeeeccc
Q psy10923 75 VVRVLKPVANCSGHGIRIYRQLEDIKRAIGT-LKNLTCPRCVVQKYIE 121 (520)
Q Consensus 75 ~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~-~~~~~~~~~VvQkYI~ 121 (520)
-.-|+||..+..|+|+.++.+.+++....+. +..+....++||+||.
T Consensus 164 ~PvVVKP~~g~gg~Gv~iv~~~eeL~~a~~~~~~~s~~~~vlvEe~I~ 211 (1066)
T PRK05294 164 YPVIIRPSFTLGGTGGGIAYNEEELEEIVERGLDLSPVTEVLIEESLL 211 (1066)
T ss_pred CCeEEEcCCCCCCCCeEEECCHHHHHHHHHHHHhhCCCCeEEEEEccc
Confidence 3569999999999999999999998876652 2211235789999996
No 70
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=93.68 E-value=0.28 Score=50.49 Aligned_cols=55 Identities=18% Similarity=0.369 Sum_probs=43.6
Q ss_pred CCcceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEE
Q psy10923 72 GVNVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWY 137 (520)
Q Consensus 72 ~~~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyV 137 (520)
..+-.+|+||..++.|+|+.++++.+++.++... ...++||+||. |+-+.+.+++
T Consensus 146 ~~~~P~viKP~~g~~s~gv~~v~~~~el~~~~~~-----~~~~lvqeyi~------G~e~~v~~~~ 200 (326)
T PRK12767 146 ELQFPLFVKPRDGSASIGVFKVNDKEELEFLLEY-----VPNLIIQEFIE------GQEYTVDVLC 200 (326)
T ss_pred cCCCCEEEEeCCCCCccCeEEeCCHHHHHHHHHh-----CCCeEEEeccC------CceEEEEEEE
Confidence 3456799999999999999999999999887754 34899999994 6655555543
No 71
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=93.56 E-value=0.26 Score=47.89 Aligned_cols=45 Identities=20% Similarity=0.319 Sum_probs=33.7
Q ss_pred EEEcCCCCCCCCceEEeCChHHHHHHHhhccc-----CCCCcceeeeccc
Q psy10923 77 RVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-----LTCPRCVVQKYIE 121 (520)
Q Consensus 77 WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~-----~~~~~~VvQkYI~ 121 (520)
.++||...+.|+|+.|+.+.++..+.++.+-. ......||++|++
T Consensus 41 ~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~~~~fg~~~~~vvIEE~l~ 90 (194)
T PF01071_consen 41 VVIKADGLAAGKGVVIADDREEALEALREIFVDRKFGDAGSKVVIEEFLE 90 (194)
T ss_dssp EEEEESSSCTTTSEEEESSHHHHHHHHHHHHTSSTTCCCGSSEEEEE---
T ss_pred eEEccCCCCCCCEEEEeCCHHHHHHHHHHhccccccCCCCCcEEEEeccC
Confidence 59999999999999999999988877764321 1246789999986
No 72
>PLN02735 carbamoyl-phosphate synthase
Probab=93.24 E-value=0.61 Score=56.49 Aligned_cols=46 Identities=15% Similarity=0.157 Sum_probs=36.9
Q ss_pred eEEEcCCCCCCCCceEEeCChHHHHHHHhhcc-cCCCCcceeeeccc
Q psy10923 76 VRVLKPVANCSGHGIRIYRQLEDIKRAIGTLK-NLTCPRCVVQKYIE 121 (520)
Q Consensus 76 ~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~-~~~~~~~VvQkYI~ 121 (520)
.-|+||..++.|+|+.++.+.+++........ .+.....+|++||.
T Consensus 182 PvVVKP~~~~GG~Gv~iv~n~eEL~~a~~~a~~~s~~~~VLVEe~I~ 228 (1102)
T PLN02735 182 PLIIRPAFTLGGTGGGIAYNKEEFETICKAGLAASITSQVLVEKSLL 228 (1102)
T ss_pred CEEEEeCCCCCCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 56999999999999999999999988775421 12246789999986
No 73
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=93.05 E-value=0.18 Score=54.90 Aligned_cols=53 Identities=23% Similarity=0.283 Sum_probs=37.4
Q ss_pred hcCCcceEEEcCCCCCCCCceEEeCCh--HHHHHHHhhcccCCCCcceeeeccccccc
Q psy10923 70 IHGVNVVRVLKPVANCSGHGIRIYRQL--EDIKRAIGTLKNLTCPRCVVQKYIEKPLL 125 (520)
Q Consensus 70 ~~~~~~~WI~KP~~~srG~GI~l~~~~--~~I~~~~~~~~~~~~~~~VvQkYI~~PlL 125 (520)
.-.++.-||+||..+..|+||.+=... ++=.+.++... .++||+|+|+.-|-+
T Consensus 334 ~~a~r~~lVLKP~D~Ygg~GV~~G~e~~~eeW~~~l~~a~---~~~yilQe~v~~~~~ 388 (445)
T PF14403_consen 334 AIANRDRLVLKPNDEYGGKGVYIGWETSPEEWEAALEEAA---REPYILQEYVRPPRE 388 (445)
T ss_pred HHhchhcEEeccccccCCCCeEECCcCCHHHHHHHHHHHh---cCCcEEEEEecCCcc
Confidence 346778899999999999999987642 33223333222 569999999986444
No 74
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=92.71 E-value=0.83 Score=50.46 Aligned_cols=46 Identities=15% Similarity=0.434 Sum_probs=31.8
Q ss_pred eEEEcCCCCCCCCceEEeCChHH-----H----HHHHhhc----cc--CCCCcceeeeccc
Q psy10923 76 VRVLKPVANCSGHGIRIYRQLED-----I----KRAIGTL----KN--LTCPRCVVQKYIE 121 (520)
Q Consensus 76 ~WI~KP~~~srG~GI~l~~~~~~-----I----~~~~~~~----~~--~~~~~~VvQkYI~ 121 (520)
..|+||..++.|+|+.++.+.++ + .+..+.. .. .....+|||+||+
T Consensus 146 PvVVKP~~~aggkGV~iv~~~~e~~~~~~~ea~~~a~~~~~~~~~~~g~~~~~VlIEEfL~ 206 (486)
T PRK05784 146 SVAIKPARQAGGKGVKVIADLQAYLSQEKREALTKSVNDIKEGSAYYKDVEPKILVEEKVD 206 (486)
T ss_pred CEEEeeCCCCCCCCEEEECChhHhcchhHHHHHHHHHHHHHHhHhhccCCCCeEEEEEccC
Confidence 67999999999999999998762 1 1111211 00 1245799999997
No 75
>KOG2155|consensus
Probab=92.59 E-value=0.12 Score=55.14 Aligned_cols=90 Identities=16% Similarity=0.306 Sum_probs=66.8
Q ss_pred CCCcEEeeccccccccc---CCCCeEeccCCC-CCchhhhhHHhhhccCCCcccCCCCCcCCccccCCchHHHHHHHHHH
Q psy10923 422 KPDLLFALRKNYITWSA---LEPDTVVSYFPK-CNFCSKLGLNICLESTPVFKNDSDSLKYPRGFNMSNEISMRRFVQNF 497 (520)
Q Consensus 422 ~p~fiWt~~~~~~~~~~---l~~~~~~n~~~~-~~fttKvGLc~~l~~l~w~~~~~~~~~fPRcY~l~~~~~~~~Fi~df 497 (520)
..|.+|+.+.- -|+.. -++++++|+|+- +|.|.|--|..+.+.-+ .++--.||+|+|.+ +.-.||.+|
T Consensus 332 dADilw~~~hf-~Dykkls~e~p~~~iNQFPfE~cltvKd~LA~~a~r~~-----g~~~Wlq~TyNL~T--qLpqFv~~f 403 (631)
T KOG2155|consen 332 DADILWMIKHF-HDYKKLSEENPCGMINQFPFESCLTVKDLLAACAMRDP-----GKNDWLQLTYNLNT--QLPQFVARF 403 (631)
T ss_pred ccceeeehhhH-HHHHHHhccCCcceeccCchHHHHHHHHHHHHHHhhcC-----CCCccccccccccc--chHHHHHHH
Confidence 35778886643 23444 456899999998 99999999999988532 34448999999998 566799999
Q ss_pred HH---------------HHHHHH-------HHHHHHHhhhcCCC
Q psy10923 498 RE---------------TSCFSL-------MRYVKHCFEKHKPV 519 (520)
Q Consensus 498 ~~---------------ta~~s~-------lk~~~~~~~~~~~~ 519 (520)
+. .-|||+ |.-+++++|...||
T Consensus 404 q~Rer~g~~N~WI~KPWNlAR~~Dt~vT~~L~~IIRm~EtgPKi 447 (631)
T KOG2155|consen 404 QNRERNGQHNVWIVKPWNLARGMDTTVTEDLNQIIRMIETGPKI 447 (631)
T ss_pred HHHHhcCcCceEEechhhhhhcccchhhhhHHHHHHHHhcCchH
Confidence 75 235554 78888888876654
No 76
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=91.61 E-value=1.5 Score=48.59 Aligned_cols=69 Identities=17% Similarity=0.335 Sum_probs=47.9
Q ss_pred ceEEEcCCCCCCCCceEEeCChHHHHHHHhhccc-----CCCCcceeeeccccccccccceeeeeEEEEEeeecCceEEE
Q psy10923 75 VVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-----LTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIWV 149 (520)
Q Consensus 75 ~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~-----~~~~~~VvQkYI~~PlLi~GrKFDlRvyVLvts~~PL~vY~ 149 (520)
-.=.+|.++|..|+|+.++.+.+++....++..+ =.+...++-||+.+|= ||=+-|+-.. ....+|+
T Consensus 153 yPVlIKAsaGGGGKGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~PR-------HIEiQV~aD~-HGNvv~L 224 (645)
T COG4770 153 YPVLIKASAGGGGKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDKPR-------HIEIQVFADQ-HGNVVHL 224 (645)
T ss_pred CcEEEEeccCCCCCceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCCCc-------eEEEEEEecC-CCCEEEe
Confidence 3447999999999999999999998876653221 1366789999999874 3444444332 3455555
Q ss_pred Ee
Q psy10923 150 YH 151 (520)
Q Consensus 150 y~ 151 (520)
+.
T Consensus 225 gE 226 (645)
T COG4770 225 GE 226 (645)
T ss_pred ec
Confidence 53
No 77
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=91.43 E-value=0.36 Score=48.58 Aligned_cols=37 Identities=35% Similarity=0.582 Sum_probs=29.0
Q ss_pred cCCcceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccc
Q psy10923 71 HGVNVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIE 121 (520)
Q Consensus 71 ~~~~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~ 121 (520)
......+|+||..+++|.||.+..+..++ .|+|.||+
T Consensus 135 ~~~~~k~ViKp~dgCgge~i~~~~~~pd~--------------~i~qEfIe 171 (307)
T COG1821 135 AEEPKKYVIKPADGCGGEGILFGRDFPDI--------------EIAQEFIE 171 (307)
T ss_pred ccCCceEEecccccCCcceeeccCCCcch--------------hhHHHhcC
Confidence 34567889999999999999998875543 56677776
No 78
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=91.24 E-value=2.5 Score=51.80 Aligned_cols=51 Identities=18% Similarity=0.335 Sum_probs=38.7
Q ss_pred CCcceEEEcCCCCCCCCceEEeCChHHHHHHHhhccc-----CCCCcceeeecccc
Q psy10923 72 GVNVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-----LTCPRCVVQKYIEK 122 (520)
Q Consensus 72 ~~~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~-----~~~~~~VvQkYI~~ 122 (520)
..+-..|+||..++.|+|+.++++.+++....+.... -....++||+||+.
T Consensus 148 ~igyPvVVKP~~ggGG~GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~g 203 (1201)
T TIGR02712 148 EIGYPVMLKSTAGGGGIGMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVEN 203 (1201)
T ss_pred hcCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCC
Confidence 3355789999999999999999999998866553211 01346899999974
No 79
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=90.80 E-value=0.063 Score=54.77 Aligned_cols=57 Identities=21% Similarity=0.230 Sum_probs=19.0
Q ss_pred CCCeEeccCCC-CCchhhhhHHhhhccCCCcccCCCCCcCCccccCCchHHHHHHHHHHHH
Q psy10923 440 EPDTVVSYFPK-CNFCSKLGLNICLESTPVFKNDSDSLKYPRGFNMSNEISMRRFVQNFRE 499 (520)
Q Consensus 440 ~~~~~~n~~~~-~~fttKvGLc~~l~~l~w~~~~~~~~~fPRcY~l~~~~~~~~Fi~df~~ 499 (520)
.+.|++|||+. ..+|.|.+|..+++...=... ....|+|++|.| +.+..+|...+..
T Consensus 5 ~~~q~vN~~p~~~~l~~K~~l~~~l~~~~~~~~-~~~~~~p~t~~l--~~~~~~~~~~~~~ 62 (292)
T PF03133_consen 5 KPFQKVNHFPGSQELTRKDLLAKNLQRYRKKFP-KEFDFYPETFIL--PQDYKEFLKYFEK 62 (292)
T ss_dssp CHHTT-TSS--EEEE------------------------------H--HHHHHHHHHHHHT
T ss_pred CCCeeEccCCCCchhhhhHHHHHHHHHHHhhcC-CcccCCcceEec--HHHHHHHHHHHhc
Confidence 34689999999 779999999999998542211 125699999999 4678888877653
No 80
>KOG0369|consensus
Probab=90.53 E-value=1 Score=50.74 Aligned_cols=56 Identities=23% Similarity=0.381 Sum_probs=42.1
Q ss_pred hcCCcceEEEcCCCCCCCCceEEeCChHHHHHHHhhcc-----cCCCCcceeeeccccccc
Q psy10923 70 IHGVNVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLK-----NLTCPRCVVQKYIEKPLL 125 (520)
Q Consensus 70 ~~~~~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~-----~~~~~~~VvQkYI~~PlL 125 (520)
.+..+-.-|+|.+.|..|||+.++++.+++....+... .=.++...|.|+|++|--
T Consensus 180 ~k~yG~PvI~KAAyGGGGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ekPrH 240 (1176)
T KOG0369|consen 180 VKEYGLPVIIKAAYGGGGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEKPRH 240 (1176)
T ss_pred HHhcCCcEEEeecccCCCcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcCcce
Confidence 34456667999999999999999999998876544211 113678899999998753
No 81
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=89.82 E-value=0.59 Score=51.79 Aligned_cols=50 Identities=24% Similarity=0.438 Sum_probs=38.7
Q ss_pred CcceEEEcCCCCCCCCceEEeCChHHHHHHHhhccc-----CCCCcceeeecccc
Q psy10923 73 VNVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-----LTCPRCVVQKYIEK 122 (520)
Q Consensus 73 ~~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~-----~~~~~~VvQkYI~~ 122 (520)
-+-.+|+||..++.|+|+.++++.+++.+..+.... -....++||+||..
T Consensus 151 igyPvvIKp~~GgGG~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~~ 205 (499)
T PRK08654 151 IGYPVIIKASAGGGGIGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEK 205 (499)
T ss_pred hCCCEEEEeCCCCCCCeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 345789999999999999999999998876653210 01357899999975
No 82
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=89.61 E-value=3.9 Score=44.10 Aligned_cols=52 Identities=19% Similarity=0.357 Sum_probs=37.0
Q ss_pred hcCCcceEEEcCCCCCCCCceEEeCChHHHHHHHhhccc-----CCCCcceeeeccc
Q psy10923 70 IHGVNVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-----LTCPRCVVQKYIE 121 (520)
Q Consensus 70 ~~~~~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~-----~~~~~~VvQkYI~ 121 (520)
++.....|++||...+.|+|+.|..+.++..+.++.+.. ......||-.|+.
T Consensus 134 i~~~g~piVVKadGLaaGKGV~V~~~~eeA~~a~~~~l~~~~fg~~g~~VVIEEfL~ 190 (428)
T COG0151 134 IDEKGAPIVVKADGLAAGKGVIVAMTLEEAEAAVDEMLEGNAFGSAGARVVIEEFLD 190 (428)
T ss_pred HHHcCCCEEEecccccCCCCeEEcCCHHHHHHHHHHHHhhccccCCCCcEEEEeccc
Confidence 344556699999999999999999998888876653221 1124467777664
No 83
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=89.39 E-value=3.8 Score=49.70 Aligned_cols=48 Identities=17% Similarity=0.308 Sum_probs=37.4
Q ss_pred cceEEEcCCCCCCCCceEEeCChHHHHHHHhhcc-cCCCCcceeeeccc
Q psy10923 74 NVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLK-NLTCPRCVVQKYIE 121 (520)
Q Consensus 74 ~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~-~~~~~~~VvQkYI~ 121 (520)
+-..|+||..+..|+|+.++++.+++....+... .+...+++||+||.
T Consensus 163 gyPvVVKP~~g~gG~Gv~iv~~~eEL~~a~~~~~~~s~~~~vLVEe~I~ 211 (1068)
T PRK12815 163 GFPIIVRPAYTLGGTGGGIAENLEELEQLFKQGLQASPIHQCLLEESIA 211 (1068)
T ss_pred CCCEEEEECcCCCCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEccC
Confidence 3467999999999999999999999887764322 11235799999996
No 84
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=89.28 E-value=0.43 Score=52.10 Aligned_cols=50 Identities=28% Similarity=0.529 Sum_probs=38.9
Q ss_pred ceEEEcCCCCCCCCceEEeCChHHHHHHHhhccc-----CCCCcceeeecccccc
Q psy10923 75 VVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-----LTCPRCVVQKYIEKPL 124 (520)
Q Consensus 75 ~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~-----~~~~~~VvQkYI~~Pl 124 (520)
-.=|+||++|..|+|++++++.+++.+......+ -.+..+.+++||++|-
T Consensus 153 yPVivKa~~GgGg~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~r 207 (449)
T COG0439 153 YPVIVKAAAGGGGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGPR 207 (449)
T ss_pred CCEEEEECCCCCcccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccCCc
Confidence 3459999999999999999999998877653221 0245599999999863
No 85
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=86.95 E-value=1.7 Score=52.59 Aligned_cols=56 Identities=9% Similarity=0.288 Sum_probs=43.6
Q ss_pred CcceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeE
Q psy10923 73 VNVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRV 135 (520)
Q Consensus 73 ~~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRv 135 (520)
.+-.+|+||..+..|+|+.++.+.+++.++.+.. .+...+++||+||+ |..+++-+
T Consensus 704 igyPvVVKP~~~~Gg~gv~iv~~~eeL~~~l~~~-~s~~~~vlIeefI~------G~E~~Vd~ 759 (1068)
T PRK12815 704 IGYPVLIRPSYVIGGQGMAVVYDEPALEAYLAEN-ASQLYPILIDQFID------GKEYEVDA 759 (1068)
T ss_pred cCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHh-hcCCCCEEEEEeec------CceEEEEE
Confidence 3457899999999999999999999998877654 12356899999995 55555443
No 86
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=83.25 E-value=11 Score=39.21 Aligned_cols=59 Identities=29% Similarity=0.548 Sum_probs=33.9
Q ss_pred hhhhhcCCcceEEEcCCCCC---CCCceEEeCChHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEE
Q psy10923 66 KPLLIHGVNVVRVLKPVANC---SGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYV 138 (520)
Q Consensus 66 ~~~~~~~~~~~WI~KP~~~s---rG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVL 138 (520)
.++...|-.=.-|+||...+ ....+.|+-+.+.+.++ ..+.|+|+||+. +|.= +.+||+
T Consensus 130 ~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~L--------~~P~VlQeFVNH----ggvL--fKVyVv 191 (307)
T PF05770_consen 130 ELLKEAGLKFPLICKPLVACGSADSHKMAIVFNEEGLKDL--------KPPCVLQEFVNH----GGVL--FKVYVV 191 (307)
T ss_dssp HHHHCTTS-SSEEEEESB-SSTSCCCEEEEE-SGGGGTT----------SSEEEEE--------TTEE--EEEEEE
T ss_pred HHHHHCCCcccEEeeehhhcCCccceEEEEEECHHHHhhc--------CCCEEEEEeecC----CCEE--EEEEEe
Confidence 34555677778899998743 45568888777766543 458999999984 5532 244555
No 87
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=83.07 E-value=1.2 Score=43.73 Aligned_cols=50 Identities=22% Similarity=0.353 Sum_probs=36.4
Q ss_pred cceEEEcCCCCCCCCceEEeCChHHHHHHHhhccc-C----CCCcceeeeccccc
Q psy10923 74 NVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-L----TCPRCVVQKYIEKP 123 (520)
Q Consensus 74 ~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~-~----~~~~~VvQkYI~~P 123 (520)
+-.-++||+.+..|+|+.++.+.+++....+.... + ...+.++.+||++|
T Consensus 38 GyPVliKas~ggGG~gm~iv~~~~eL~~~~~~~~~~s~~~fg~~~v~iek~i~~~ 92 (211)
T PF02786_consen 38 GYPVLIKASAGGGGRGMRIVHNEEELEEAFERAQRESPAAFGDGPVLIEKFIEGA 92 (211)
T ss_dssp -SSEEEEETTSSTTTSEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSE
T ss_pred CCceEEeecccccccccccccchhhhhhhhhhccccCccccccceEEEeeehhhh
Confidence 33579999999999999999999999887763221 1 25788999999863
No 88
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=82.23 E-value=13 Score=43.20 Aligned_cols=74 Identities=19% Similarity=0.293 Sum_probs=49.9
Q ss_pred hcCCcceEEEcCCCCCCCCceEEeCChHHHHHHHhhccc-----CCCCcceeeeccccccccccceeeeeEEEEEeeecC
Q psy10923 70 IHGVNVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-----LTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDK 144 (520)
Q Consensus 70 ~~~~~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~-----~~~~~~VvQkYI~~PlLi~GrKFDlRvyVLvts~~P 144 (520)
.++.+-.-|+|-+.|..|||+.++++.+++.+......+ =.....-|-|||+||- ||-+-+|-.. ..
T Consensus 154 a~~~gyPvmiKA~~GGGGRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve~pk-------HIEVQiLgD~-~G 225 (1149)
T COG1038 154 AEEYGYPVMIKAAAGGGGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVENPK-------HIEVQILGDT-HG 225 (1149)
T ss_pred HHhcCCcEEEEEccCCCccceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhhhcCcc-------eeEEEEeecC-CC
Confidence 345555679999999999999999999998876653221 1356778889999875 3334444322 34
Q ss_pred ceEEEEe
Q psy10923 145 FKIWVYH 151 (520)
Q Consensus 145 L~vY~y~ 151 (520)
..|++|.
T Consensus 226 nvvHLfE 232 (1149)
T COG1038 226 NVVHLFE 232 (1149)
T ss_pred CEEEEee
Confidence 4555554
No 89
>KOG0238|consensus
Probab=81.10 E-value=9.9 Score=41.99 Aligned_cols=50 Identities=22% Similarity=0.401 Sum_probs=39.0
Q ss_pred ceEEEcCCCCCCCCceEEeCChHHHHHHHhhccc-----CCCCcceeeecccccc
Q psy10923 75 VVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-----LTCPRCVVQKYIEKPL 124 (520)
Q Consensus 75 ~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~-----~~~~~~VvQkYI~~Pl 124 (520)
-.=++|+..|..|+|+.+..+.+++....++... =.+...++-|||+||-
T Consensus 149 yPvMiKa~~GGGGkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~npR 203 (670)
T KOG0238|consen 149 YPVMIKATAGGGGKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFIDNPR 203 (670)
T ss_pred CcEEEEeccCCCCcceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhccCCc
Confidence 3458999999999999999999998776553211 1356789999999974
No 90
>COG2308 Uncharacterized conserved protein [Function unknown]
Probab=80.65 E-value=5.5 Score=43.15 Aligned_cols=121 Identities=16% Similarity=0.209 Sum_probs=73.9
Q ss_pred hHHhhHHHHHHHHhhhcccCCC---chhhhhhhhhhhhhcCCcceEEEcCCCCCCCCceEEeCC--hHHHHHHHhhcccC
Q psy10923 35 RIYRQLEDIKRAIGTLKNLTCP---RCVVQKYIEKPLLIHGVNVVRVLKPVANCSGHGIRIYRQ--LEDIKRAIGTLKNL 109 (520)
Q Consensus 35 ~L~~~l~~~~~~~~~~~~~~~P---~~~~~~~~~~~~~~~~~~~~WI~KP~~~srG~GI~l~~~--~~~I~~~~~~~~~~ 109 (520)
.+|.-+-+|.+.+.- +....| +.+-.+-.+...-+..-.. -++||..++.|-|..+=.. .+++..+.+.+. +
T Consensus 325 a~~~y~P~~~~~ylg-e~~lL~nv~T~~c~~~~el~~VL~~l~~-lViK~~~~~gg~~~lvGpa~s~~e~a~~~~~i~-a 401 (488)
T COG2308 325 ALYAYVPQMIEYYLG-EEPLLPNVPTYWCGEPDELEHVLANLSE-LVIKPVEGSGGYGMLVGPAASKAELAAFAERIK-A 401 (488)
T ss_pred hHHHHHHHHHHHHcc-cccccCCCCeeecCCHHHHHHHHhchhh-heEeeeccCCCCcceeccccCHHHHHHHHHHHH-h
Confidence 578888888877643 232222 2211111111111122222 3899999998887766543 334444433322 2
Q ss_pred CCCcceeeeccc---ccccccc----ceeeeeEEEEEeeecCceEEEEecceEEeecCC
Q psy10923 110 TCPRCVVQKYIE---KPLLIHG----VKFDLRVWYVITNIDKFKIWVYHEGYVRFCSKP 161 (520)
Q Consensus 110 ~~~~~VvQkYI~---~PlLi~G----rKFDlRvyVLvts~~PL~vY~y~~g~vRfat~~ 161 (520)
..++||.|.-++ .|..++| |-.|+|.|++.+. -.+++.-.|+.|++...
T Consensus 402 ~p~~~IaQ~~~~lST~Pt~v~~~l~pr~vdlR~f~~~~~---~~~~v~pGGLtRVal~~ 457 (488)
T COG2308 402 DPENYIAQPVLQLSTVPTFVDGGLAPRHVDLRPFALADR---DGVQVMPGGLTRVALRE 457 (488)
T ss_pred ChhhhcccccccccccceEECCeeccccccceeEEEEcC---CceEEcccceeeeeecC
Confidence 366889987553 5666665 7799999999654 66899999999999774
No 91
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=70.96 E-value=27 Score=33.17 Aligned_cols=76 Identities=21% Similarity=0.321 Sum_probs=49.2
Q ss_pred cceEEEc-CCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEEEee-e------cCc
Q psy10923 74 NVVRVLK-PVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITN-I------DKF 145 (520)
Q Consensus 74 ~~~WI~K-P~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVLvts-~------~PL 145 (520)
+-..|+| +..|.-|+|-.++++.+++.+..+.+. ..++|+.++|. |+--+=|++.. . -|+
T Consensus 28 G~P~vlK~~~~GYDGkGq~~i~~~~dl~~a~~~~~---~~~~ilE~~v~---------f~~EiSvivaR~~~G~~~~yp~ 95 (172)
T PF02222_consen 28 GFPAVLKTRRGGYDGKGQFVIRSEEDLEKAWQELG---GGPCILEEFVP---------FDREISVIVARDQDGEIRFYPP 95 (172)
T ss_dssp TSSEEEEESSSSCTTTTEEEESSGGGHHHHHHHTT---TSCEEEEE------------ESEEEEEEEEEETTSEEEEEEE
T ss_pred CCCEEEEccCcCcCCCccEEECCHHHHHHHHHhcC---CCcEEEEeccC---------CcEEEEEEEEEcCCCCEEEEcC
Confidence 4466999 677899999999999999998777653 68899999996 22222222221 1 122
Q ss_pred eEEEEecceEEeecCC
Q psy10923 146 KIWVYHEGYVRFCSKP 161 (520)
Q Consensus 146 ~vY~y~~g~vRfat~~ 161 (520)
.--++++|.++.+..|
T Consensus 96 ~en~~~~~il~~s~~P 111 (172)
T PF02222_consen 96 VENVHRDGILHESIAP 111 (172)
T ss_dssp EEEEEETTEEEEEEES
T ss_pred ceEEEECCEEEEEECC
Confidence 2335677777777666
No 92
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=70.41 E-value=4 Score=44.02 Aligned_cols=59 Identities=27% Similarity=0.319 Sum_probs=40.1
Q ss_pred eEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEE
Q psy10923 76 VRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYV 138 (520)
Q Consensus 76 ~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVL 138 (520)
-|+.||..|-.|.+|.++.....+...-.. -..+.+|.|+|+.-| -++|.-.-|..|++
T Consensus 309 ~yV~KPi~gREG~nV~i~~~g~~~~~~~g~---y~~~~~IyQ~~~~Lp-~f~g~~~~iGsw~v 367 (397)
T PHA02117 309 KYVSKPLLSREGNNIHIFEYGGESEDTDGN---YAEEPRVVQQLIEWG-RFDGCYPMIGVWMV 367 (397)
T ss_pred CEEeccCCCcCCCCEEEEECCeEEeccCCC---CCCCCeEEEEccCCc-ccCCcEEEEEEEEE
Confidence 499999999999999999764333211011 125789999999977 55776444555544
No 93
>KOG2156|consensus
Probab=60.96 E-value=2.4 Score=46.56 Aligned_cols=73 Identities=15% Similarity=0.188 Sum_probs=46.9
Q ss_pred cccccCCCCeEeccCCCC-CchhhhhHHhhhcc-CCCcccCCCCCcCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10923 434 ITWSALEPDTVVSYFPKC-NFCSKLGLNICLES-TPVFKNDSDSLKYPRGFNMSNEISMRRFVQNFRETSCFSLMRYVKH 511 (520)
Q Consensus 434 ~~~~~l~~~~~~n~~~~~-~fttKvGLc~~l~~-l~w~~~~~~~~~fPRcY~l~~~~~~~~Fi~df~~ta~~s~lk~~~~ 511 (520)
..|+.++..|-+|||+.+ -.+-|-.|-.++.. .-=|... -=.|+||+|+|-+ |+++|. +|+.+-|..+ |+|+
T Consensus 238 p~fr~ir~HQkvNH~PGsF~IGRKD~lW~~~~~~~~rf~~k-ef~fmPrtyilP~--d~e~lr-k~w~~nasr~--wIVk 311 (662)
T KOG2156|consen 238 PSFRAIRSHQKVNHFPGSFRIGRKDRLWRNILRNQVRFGKK-EFGFMPRTYILPA--DREELR-KYWEKNASRL--WIVK 311 (662)
T ss_pred chhhhhhhhhhhccCCCccccccchHHHHHHHHHHHHhccc-ccCccceeeeccc--cHHHHH-HHHhhCcccc--EEec
Confidence 456899999999999983 36777666555443 2223221 2249999999976 566666 4666644433 6555
Q ss_pred H
Q psy10923 512 C 512 (520)
Q Consensus 512 ~ 512 (520)
.
T Consensus 312 p 312 (662)
T KOG2156|consen 312 P 312 (662)
T ss_pred C
Confidence 3
No 94
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=59.20 E-value=27 Score=36.81 Aligned_cols=50 Identities=18% Similarity=0.347 Sum_probs=34.0
Q ss_pred CCcceEEEcCCCCCCCCceEEeC-ChHHHHHHHh-------------hcc-cCCCCcceeeeccc
Q psy10923 72 GVNVVRVLKPVANCSGHGIRIYR-QLEDIKRAIG-------------TLK-NLTCPRCVVQKYIE 121 (520)
Q Consensus 72 ~~~~~WI~KP~~~srG~GI~l~~-~~~~I~~~~~-------------~~~-~~~~~~~VvQkYI~ 121 (520)
.....-++||..|..|+|.+++. +.+++..+.. .+. .....++||+.|+.
T Consensus 143 ~~~~~~CvKP~~g~gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llvMeyL~ 207 (329)
T PF15632_consen 143 FPGQPLCVKPAVGIGGRGFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPLLVMEYLP 207 (329)
T ss_pred CCCceEEEecccCCCcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEEecCCC
Confidence 34566799999999999999997 4444444332 000 01356789998886
No 95
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=58.52 E-value=12 Score=36.55 Aligned_cols=96 Identities=19% Similarity=0.171 Sum_probs=56.3
Q ss_pred ccchHHhhHHHHHHHHhhhcccCCCchhhhhhhhhhhhhcCCcceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCC
Q psy10923 32 HGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVNVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTC 111 (520)
Q Consensus 32 rk~~L~~~l~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~ 111 (520)
.|--+|.+|.++++.+|...+-.+++++.....+.. ...+-.-++|-+..++|-|=..+++..+......-+.- ..
T Consensus 11 dKpWvF~qLi~i~~~lG~e~FPLieQt~ypnh~em~---s~~~fPvVvKvG~~h~G~GKvkv~n~~~~qDi~sll~~-~~ 86 (203)
T PF02750_consen 11 DKPWVFAQLIKIQKRLGPEKFPLIEQTYYPNHREML---SAPRFPVVVKVGHAHAGMGKVKVDNQQDFQDIASLLAI-TK 86 (203)
T ss_dssp SHHHHHHHHHHHHHHHHTTTS-B---EEESSGGGGC---S-SSSSEEEEESS-STTTTEEEE-SHHHHHHHHHHHHH-HT
T ss_pred CCcHHHHHHHHHHHHhCCcccccceeeecCChhhhc---cCCCCCEEEEEccccCceeEEEEccHHHHHHHHHHHHh-cC
Confidence 445589999999999998777667777654443221 22344669999999999998888887777655431110 02
Q ss_pred CcceeeeccccccccccceeeeeEEEE
Q psy10923 112 PRCVVQKYIEKPLLIHGVKFDLRVWYV 138 (520)
Q Consensus 112 ~~~VvQkYI~~PlLi~GrKFDlRvyVL 138 (520)
....+-.|| ..|+|||+--+
T Consensus 87 ~Y~T~EPfI-------d~kyDirvqkI 106 (203)
T PF02750_consen 87 DYATTEPFI-------DAKYDIRVQKI 106 (203)
T ss_dssp S-EEEEE----------EEEEEEEEEE
T ss_pred ceEEeeccc-------cceeEEEEEEE
Confidence 223333344 57999998554
No 96
>KOG2158|consensus
Probab=57.34 E-value=3.4 Score=44.85 Aligned_cols=38 Identities=21% Similarity=0.366 Sum_probs=33.2
Q ss_pred cccccccc-ceeeccccccccccccceEEEEecCCCCCCCcC-cchhh
Q psy10923 257 RFCSKPYS-NILLDEARHLTNVRIQKQYRNVRDPPQLPADLG-DYNFL 302 (520)
Q Consensus 257 ~~cfel~G-D~llD~~~kp~~~~~~~wLLEVN~sPsl~~~~~-d~~i~ 302 (520)
..||+.+| |++. ...++ |++|+|..|+.+.+.. |+..+
T Consensus 12 ~v~~~~~~~~~~~-~~~~~-------w~~~~~~~p~~~~~~~~~~~~~ 51 (565)
T KOG2158|consen 12 SVCFEVLGFDILL-RKLKP-------WLLEINRAPSFGTDQKIDYDVK 51 (565)
T ss_pred eeehHhhhhhhhh-hhccc-------ccchhhcCCCCCCCcCcchhhh
Confidence 46999999 9999 88888 9999999999999987 77665
No 97
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=51.80 E-value=15 Score=41.86 Aligned_cols=60 Identities=17% Similarity=0.263 Sum_probs=39.0
Q ss_pred eEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEE
Q psy10923 76 VRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYV 138 (520)
Q Consensus 76 ~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVL 138 (520)
-|+.||..|-.|.+|.|+..-..+...... .=..+.+|.|+|+.-| -++|...-|..|++
T Consensus 529 ~yV~KPi~GREG~nV~i~~~~g~~~~~~~g--~y~~~~~IyQ~~~~LP-~f~~~~~~iGsw~v 588 (619)
T PRK10507 529 GYAVKPIAGRCGSNIDLVSHQEEVLDKTSG--KFAEQKNIYQQLWCLP-KVDGKYIQVCTFTV 588 (619)
T ss_pred CeEeccCCCcCCCCEEEEeCCCcEeeccCC--CCCCCCeEEEEeccCc-ccCCCEEEEEEEEE
Confidence 499999999999999999762222211111 0125779999999877 44654444555544
No 98
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=48.06 E-value=73 Score=33.53 Aligned_cols=94 Identities=22% Similarity=0.355 Sum_probs=58.5
Q ss_pred hHHhhHHHHHHHHhhhcccCCCch---hhhhhhhhhhhhcCCcceEEEcCCCCCCCCceEEeCChHHHHHHHhh---ccc
Q psy10923 35 RIYRQLEDIKRAIGTLKNLTCPRC---VVQKYIEKPLLIHGVNVVRVLKPVANCSGHGIRIYRQLEDIKRAIGT---LKN 108 (520)
Q Consensus 35 ~L~~~l~~~~~~~~~~~~~~~P~~---~~~~~~~~~~~~~~~~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~---~~~ 108 (520)
+|--|=+.+++.. .+..-.|++ |...+.+.+...+.-+-.=++||..+|-|+|-.++++.+++.+.-+. ...
T Consensus 109 ~ltMnRegiRrlA--AeeLglpTs~Y~fa~s~~e~~~a~~~iGfPcvvKPvMSSSGkGqsvv~~~e~ve~AW~~A~~g~R 186 (394)
T COG0027 109 KLTMNREGIRRLA--AEELGLPTSKYRFADSLEELRAAVEKIGFPCVVKPVMSSSGKGQSVVRSPEDVEKAWEYAQQGGR 186 (394)
T ss_pred HhhhcHHHHHHHH--HHHhCCCCccccccccHHHHHHHHHHcCCCeecccccccCCCCceeecCHHHHHHHHHHHHhcCC
Confidence 3434445555554 344455544 22233333333344444558999999999999999999999875442 112
Q ss_pred CCCCcceeeeccccccccccceeeeeEEEEE
Q psy10923 109 LTCPRCVVQKYIEKPLLIHGVKFDLRVWYVI 139 (520)
Q Consensus 109 ~~~~~~VvQkYI~~PlLi~GrKFDlRvyVLv 139 (520)
...+..||-.+|. ||+-+-+|.
T Consensus 187 ~~~~RVIVE~fv~---------fd~EiTlLt 208 (394)
T COG0027 187 GGSGRVIVEEFVK---------FDFEITLLT 208 (394)
T ss_pred CCCCcEEEEEEec---------ceEEEEEEE
Confidence 3466778888875 888776664
No 99
>KOG3895|consensus
Probab=39.71 E-value=1.4e+02 Score=31.89 Aligned_cols=68 Identities=19% Similarity=0.137 Sum_probs=39.6
Q ss_pred ccchHHhhHHHHHHHHhhhcccCCCchhhhhhhhhhhhhcCCcceEEEcCCCCCCCCceEEeCChHHHHHH
Q psy10923 32 HGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVNVVRVLKPVANCSGHGIRIYRQLEDIKRA 102 (520)
Q Consensus 32 rk~~L~~~l~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~WI~KP~~~srG~GI~l~~~~~~I~~~ 102 (520)
.|-.++.+|.++-...|..++-.+|.++...-.+- .....-.-+||-..++.|.|=.-+++-.++..+
T Consensus 200 dkpwvf~Qlvki~~slG~e~fPli~qt~yPnHK~m---~s~~tyPvVVkvghahsGmGKiKV~Nh~dfqDi 267 (488)
T KOG3895|consen 200 DKPWVFAQLVKITKSLGPEKFPLIEQTFYPNHKEM---LSQPTYPVVVKVGHAHSGMGKIKVENHEDFQDI 267 (488)
T ss_pred cchHHHHHHHHHHHhcCccccccceeeecCCchhh---ccCCCCcEEEEecccccccceeeecchhhhHhH
Confidence 34457777777777777666656666654331111 111223448999999999995555555555443
No 100
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=37.06 E-value=44 Score=35.08 Aligned_cols=48 Identities=15% Similarity=0.159 Sum_probs=37.1
Q ss_pred cceEEEcCCCCCCCCceEEeCChHHHHHHHhhccc------CCCCcceeeeccc
Q psy10923 74 NVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN------LTCPRCVVQKYIE 121 (520)
Q Consensus 74 ~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~------~~~~~~VvQkYI~ 121 (520)
+..=|||+...-+|+|-++.++.++.....+.+.+ ..-....+|+||-
T Consensus 150 dr~VIVK~pgAkggRGyFiA~s~eef~ek~e~l~~~gvi~~edlkna~IeEYv~ 203 (361)
T COG1759 150 DRPVIVKLPGAKGGRGYFIASSPEEFYEKAERLLKRGVITEEDLKNARIEEYVV 203 (361)
T ss_pred CCceEEecCCccCCceEEEEcCHHHHHHHHHHHHHcCCcchhhhhhceeeEEee
Confidence 45669999998889999999999998877764432 1234678999985
No 101
>COG0754 Gsp Glutathionylspermidine synthase [Amino acid transport and metabolism]
Probab=33.15 E-value=12 Score=39.62 Aligned_cols=46 Identities=15% Similarity=0.205 Sum_probs=32.8
Q ss_pred eEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccccc
Q psy10923 76 VRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKP 123 (520)
Q Consensus 76 ~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~P 123 (520)
.|+.||..|-.|.+|.++.+-.+........- ..+.+|.|+|.+-|
T Consensus 298 ~yv~KPl~gREGaNv~i~~~~~~~~~~~~G~Y--g~eg~IyQe~~~Lp 343 (387)
T COG0754 298 SYVRKPLFGREGANVSIFEDAGKVLDKADGPY--GEEGMIYQEFYPLP 343 (387)
T ss_pred hhhccccccccCCCeeEEecCCceeecCCCCc--cccchhhhhhccCc
Confidence 39999999999999999976443332222111 26789999999754
No 102
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=28.11 E-value=43 Score=35.33 Aligned_cols=93 Identities=16% Similarity=0.157 Sum_probs=39.8
Q ss_pred eecCCcccCCccchHHhhHHHHHHHHhhhcccC---CCchhhhhhhhhhhhhcCCcceEEEcCCCCCCCCceEEeCChH-
Q psy10923 22 VLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLT---CPRCVVQKYIEKPLLIHGVNVVRVLKPVANCSGHGIRIYRQLE- 97 (520)
Q Consensus 22 ~lkP~~~~~Grk~~L~~~l~~~~~~~~~~~~~~---~P~~~~~~~~~~~~~~~~~~~~WI~KP~~~srG~GI~l~~~~~- 97 (520)
|.+|.-+-+..--.+|--+.+|.+.+ .-+... +|+++..+-.+... .-.....|++||..++.|.|+.+-.+.+
T Consensus 234 iaNa~G~gv~edkal~~~lp~~~r~~-LgeellL~~VpT~~cg~~~~~~~-Vl~~l~~lvvKp~~g~gg~~~~~G~~~s~ 311 (330)
T PF04174_consen 234 IANAPGSGVAEDKALYAFLPRMIRYY-LGEELLLPNVPTWWCGDPEDREY-VLANLDELVVKPADGYGGKGVYIGPKLSA 311 (330)
T ss_dssp EES-TTTHHHHSTTTGGGHHHHHHHH-H-S--SSEE---EETTSHHHHHH-HHHSGGGEEEEE--------EEEGGG--H
T ss_pred EECCCccchhcchhHHHHhHHHHHHH-cCCCcccCCCCcEeCCCHHHHHH-HHhchhhcEEEecCCCCCCcceeCCcCCH
Confidence 34444444444456778888888877 223333 34444322211111 1123446899999999999999876655
Q ss_pred HHHHHHhhcccCCCCcceee
Q psy10923 98 DIKRAIGTLKNLTCPRCVVQ 117 (520)
Q Consensus 98 ~I~~~~~~~~~~~~~~~VvQ 117 (520)
+..+..+.+.. ....||+|
T Consensus 312 e~~~~~~~I~~-~P~~yVAQ 330 (330)
T PF04174_consen 312 ERRALRAEILA-RPHRYVAQ 330 (330)
T ss_dssp HHHHHHHHHHH-SGGGEEEE
T ss_pred HHHHHHHHHHh-CccCCccC
Confidence 22233332221 23478887
No 103
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=26.21 E-value=45 Score=35.16 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=18.3
Q ss_pred ceeeccccccccccccceEEEEecCCCC
Q psy10923 265 NILLDEARHLTNVRIQKQYRNVRDPPQL 292 (520)
Q Consensus 265 D~llD~~~kp~~~~~~~wLLEVN~sPsl 292 (520)
.+-.|.+++| +|||||..||=
T Consensus 263 Q~r~d~~g~p-------~LLEINpR~sG 283 (329)
T PF15632_consen 263 QFRYDEDGNP-------KLLEINPRPSG 283 (329)
T ss_pred EEEEcCCCCE-------EEEEeCCCCcc
Confidence 6777888888 99999999974
Done!