Query psy10923
Match_columns 520
No_of_seqs 302 out of 1177
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 21:58:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10923.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10923hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tig_A TTL protein; ATP-grAsp, 100.0 1.5E-50 5.3E-55 421.6 16.5 252 25-312 69-357 (380)
2 1i7n_A Synapsin II; synapse, p 98.2 1.1E-05 3.6E-10 82.2 13.3 57 74-138 152-208 (309)
3 2p0a_A Synapsin-3, synapsin II 98.1 1.2E-05 4.1E-10 82.9 12.1 57 74-138 169-225 (344)
4 1pk8_A RAT synapsin I; ATP bin 98.1 2E-05 7E-10 83.0 12.9 57 74-138 264-320 (422)
5 3se7_A VANA; alpha-beta struct 97.9 0.00016 5.4E-09 73.9 15.6 58 74-140 165-222 (346)
6 1iow_A DD-ligase, DDLB, D-ALA\ 97.9 0.00011 3.7E-09 72.8 14.0 58 72-138 136-193 (306)
7 2r85_A PURP protein PF1517; AT 97.9 6.3E-05 2.1E-09 75.5 12.1 53 75-133 127-183 (334)
8 1e4e_A Vancomycin/teicoplanin 97.9 0.00013 4.5E-09 74.3 13.5 58 74-140 165-222 (343)
9 2i87_A D-alanine-D-alanine lig 97.8 8.5E-05 2.9E-09 76.4 11.6 57 74-139 171-227 (364)
10 4eg0_A D-alanine--D-alanine li 97.8 6.3E-05 2.2E-09 75.7 9.6 56 75-138 147-202 (317)
11 2q7d_A Inositol-tetrakisphosph 97.8 0.00018 6.3E-09 74.1 12.9 54 71-138 159-214 (346)
12 4fu0_A D-alanine--D-alanine li 97.7 0.00011 3.8E-09 75.6 9.9 48 73-121 176-223 (357)
13 3tig_A TTL protein; ATP-grAsp, 97.7 1.8E-05 6.1E-10 82.5 3.7 100 351-501 15-142 (380)
14 3tqt_A D-alanine--D-alanine li 97.7 0.0003 1E-08 73.1 12.5 57 74-139 179-236 (372)
15 3e5n_A D-alanine-D-alanine lig 97.6 0.00032 1.1E-08 73.1 12.6 56 75-139 199-254 (386)
16 2fb9_A D-alanine:D-alanine lig 97.6 0.00089 3E-08 67.7 15.1 56 74-138 150-206 (322)
17 3r5x_A D-alanine--D-alanine li 97.6 0.00022 7.5E-09 71.0 9.7 55 75-138 134-188 (307)
18 4dim_A Phosphoribosylglycinami 97.5 0.0016 5.5E-08 67.3 15.4 60 72-137 142-202 (403)
19 3k3p_A D-alanine--D-alanine li 97.4 0.00026 8.8E-09 73.9 8.5 56 74-138 201-256 (383)
20 3i12_A D-alanine-D-alanine lig 97.4 0.00073 2.5E-08 69.6 11.4 56 75-139 180-235 (364)
21 1z2n_X Inositol 1,3,4-trisphos 97.4 0.00075 2.6E-08 67.6 11.1 50 75-138 136-188 (324)
22 3q2o_A Phosphoribosylaminoimid 97.4 0.0015 5.1E-08 67.6 13.7 44 75-121 148-192 (389)
23 3k5i_A Phosphoribosyl-aminoimi 97.3 0.0019 6.5E-08 67.5 13.8 44 75-121 161-205 (403)
24 1uc8_A LYSX, lysine biosynthes 97.3 0.00025 8.6E-09 69.0 6.5 58 75-138 124-184 (280)
25 2pvp_A D-alanine-D-alanine lig 97.3 0.0012 4.1E-08 68.3 11.8 48 73-121 184-231 (367)
26 1ehi_A LMDDL2, D-alanine:D-lac 97.3 0.0011 3.7E-08 68.7 11.3 56 75-139 175-231 (377)
27 4e4t_A Phosphoribosylaminoimid 97.3 0.0047 1.6E-07 64.9 16.3 44 75-121 172-216 (419)
28 1kjq_A GART 2, phosphoribosylg 97.2 0.0039 1.3E-07 64.0 13.6 58 75-139 149-209 (391)
29 2ip4_A PURD, phosphoribosylami 97.1 0.0045 1.5E-07 64.4 13.9 57 75-139 137-194 (417)
30 2vpq_A Acetyl-COA carboxylase; 97.1 0.0051 1.7E-07 64.7 14.3 58 75-139 152-214 (451)
31 3ax6_A Phosphoribosylaminoimid 97.1 0.0022 7.6E-08 65.8 11.1 53 73-139 131-184 (380)
32 3aw8_A PURK, phosphoribosylami 97.1 0.012 4.2E-07 60.0 16.6 57 73-139 130-187 (369)
33 3lwb_A D-alanine--D-alanine li 97.1 0.0034 1.2E-07 65.0 12.4 56 75-139 189-244 (373)
34 3ouz_A Biotin carboxylase; str 97.1 0.0057 1.9E-07 64.4 14.2 58 75-139 157-219 (446)
35 3vot_A L-amino acid ligase, BL 97.0 0.0063 2.2E-07 63.5 14.1 56 74-135 145-210 (425)
36 3lp8_A Phosphoribosylamine-gly 97.0 0.0071 2.4E-07 63.9 13.9 48 74-121 158-210 (442)
37 3orq_A N5-carboxyaminoimidazol 97.0 0.0068 2.3E-07 62.6 13.4 45 74-121 145-190 (377)
38 1ulz_A Pyruvate carboxylase N- 97.0 0.0091 3.1E-07 62.7 14.5 58 75-139 152-214 (451)
39 2dwc_A PH0318, 433AA long hypo 96.9 0.0069 2.3E-07 63.3 13.2 47 75-121 157-206 (433)
40 1vkz_A Phosphoribosylamine--gl 96.9 0.013 4.4E-07 61.1 15.0 50 72-121 139-193 (412)
41 2z04_A Phosphoribosylaminoimid 96.9 0.0058 2E-07 62.3 11.7 57 74-139 126-183 (365)
42 3ln6_A Glutathione biosynthesi 96.9 0.003 1E-07 71.4 10.2 57 73-138 519-578 (750)
43 2yw2_A Phosphoribosylamine--gl 96.8 0.0054 1.8E-07 63.9 11.3 47 75-121 138-189 (424)
44 2xcl_A Phosphoribosylamine--gl 96.7 0.0069 2.4E-07 63.0 11.2 57 75-139 138-199 (422)
45 3jrx_A Acetyl-COA carboxylase 96.7 0.0073 2.5E-07 66.4 11.5 59 75-140 245-304 (587)
46 2qk4_A Trifunctional purine bi 96.7 0.015 5E-07 61.3 13.4 58 74-139 163-226 (452)
47 3glk_A Acetyl-COA carboxylase 96.6 0.0062 2.1E-07 66.3 10.4 48 75-122 229-277 (540)
48 1w96_A ACC, acetyl-coenzyme A 96.5 0.024 8.4E-07 61.5 14.3 48 75-122 235-283 (554)
49 3mjf_A Phosphoribosylamine--gl 96.5 0.0077 2.6E-07 63.4 9.9 58 74-139 142-204 (431)
50 2w70_A Biotin carboxylase; lig 96.5 0.024 8.4E-07 59.4 13.7 58 75-139 154-216 (449)
51 2yrx_A Phosphoribosylglycinami 96.5 0.012 4.2E-07 61.9 11.3 47 75-121 159-210 (451)
52 3n6x_A Putative glutathionylsp 96.4 0.0028 9.5E-08 67.8 5.9 135 20-161 307-453 (474)
53 3vmm_A Alanine-anticapsin liga 96.4 0.015 5.3E-07 62.0 11.5 50 74-123 174-234 (474)
54 2dzd_A Pyruvate carboxylase; b 96.3 0.022 7.6E-07 60.0 12.2 48 75-122 158-210 (461)
55 1gsa_A Glutathione synthetase; 96.1 0.0056 1.9E-07 60.3 5.9 58 76-138 156-214 (316)
56 3df7_A Putative ATP-grAsp supe 96.1 0.044 1.5E-06 54.9 12.3 45 73-139 132-176 (305)
57 3ln7_A Glutathione biosynthesi 95.9 0.024 8.3E-07 64.0 10.3 57 73-138 524-584 (757)
58 3u9t_A MCC alpha, methylcroton 95.9 0.023 8E-07 63.4 10.0 49 75-123 179-232 (675)
59 3n6r_A Propionyl-COA carboxyla 95.4 0.012 4.3E-07 65.7 5.3 59 74-139 152-215 (681)
60 1a9x_A Carbamoyl phosphate syn 95.0 0.089 3.1E-06 61.7 11.4 48 75-122 710-758 (1073)
61 2r7k_A 5-formaminoimidazole-4- 95.0 0.063 2.2E-06 55.4 9.0 47 75-121 151-203 (361)
62 2cqy_A Propionyl-COA carboxyla 95.0 0.025 8.6E-07 46.8 4.9 49 75-123 46-99 (108)
63 3hbl_A Pyruvate carboxylase; T 94.9 0.067 2.3E-06 63.2 9.8 51 73-123 154-209 (1150)
64 1a9x_A Carbamoyl phosphate syn 94.7 0.086 2.9E-06 61.9 10.1 48 75-122 164-212 (1073)
65 2qf7_A Pyruvate carboxylase pr 94.6 0.12 4.2E-06 61.0 11.2 59 74-139 171-234 (1165)
66 3eth_A Phosphoribosylaminoimid 94.1 0.34 1.2E-05 49.7 11.9 41 74-121 114-157 (355)
67 3t7a_A Inositol pyrophosphate 94.0 0.028 9.5E-07 56.9 3.4 59 74-138 145-216 (330)
68 2pn1_A Carbamoylphosphate synt 91.9 0.19 6.5E-06 49.9 6.0 44 73-121 148-191 (331)
69 3va7_A KLLA0E08119P; carboxyla 91.0 0.49 1.7E-05 56.3 9.1 49 74-122 180-233 (1236)
70 2vob_A Trypanothione synthetas 81.0 0.88 3E-05 50.5 3.6 50 76-128 544-593 (652)
71 2io8_A Bifunctional glutathion 80.3 0.47 1.6E-05 52.4 1.1 47 76-124 529-575 (619)
72 4ffl_A PYLC; amino acid, biosy 76.7 1.8 6.1E-05 43.6 4.1 40 74-121 125-164 (363)
73 2pbz_A Hypothetical protein; N 70.2 0.45 1.5E-05 48.2 -2.2 43 74-121 125-167 (320)
74 1wr2_A Hypothetical protein PH 58.4 5 0.00017 38.1 2.7 47 75-121 57-117 (238)
75 2fp4_B Succinyl-COA ligase [GD 34.2 52 0.0018 33.9 6.0 46 76-121 42-110 (395)
76 3ufx_B Succinyl-COA synthetase 25.4 68 0.0023 33.0 5.1 47 75-121 40-95 (397)
77 2nu8_B SCS-beta, succinyl-COA 25.0 61 0.0021 33.2 4.6 45 77-121 43-103 (388)
No 1
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=100.00 E-value=1.5e-50 Score=421.65 Aligned_cols=252 Identities=21% Similarity=0.306 Sum_probs=174.7
Q ss_pred CCcccCCccchHHhhHHHHHHHHhhhcccCCCchhhh---hhh--------------------h---h-----hhhhcCC
Q psy10923 25 PVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQ---KYI--------------------E---K-----PLLIHGV 73 (520)
Q Consensus 25 P~~~~~Grk~~L~~~l~~~~~~~~~~~~~~~P~~~~~---~~~--------------------~---~-----~~~~~~~ 73 (520)
|....++||+.|+++|.+++ .+.....|+|++++. ++. + . ....+|.
T Consensus 69 Pg~~~l~rKd~L~~nl~~~~--~~~~~~~f~P~ty~L~P~~~~~p~~~~~~~~~~~~~~~~~~E~~~F~~~~~~~~~~~~ 146 (380)
T 3tig_A 69 RGADKLCRKASLVKLIKTSP--ELTETCTWFPESYVIYPTNEKTPAMRARNGLPDLANAPRTDEREEFRSSFNKKKENEE 146 (380)
T ss_dssp TTTHHHHSHHHHHHHHHHCH--HHHTTCTTSCCEEECCC------------------------CCHHHHHHHHHHHHTTC
T ss_pred CCcccccccHHHHHHHHHhh--hcccccCcCCcceeeCccccccccccccccccccccccchhHHHHHHHHHHHhhhcCC
Confidence 34456889999999999854 344567788887642 110 1 0 1123578
Q ss_pred cceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeecccccccc--ccceeeeeEEEEEeeecCceEEEEe
Q psy10923 74 NVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLI--HGVKFDLRVWYVITNIDKFKIWVYH 151 (520)
Q Consensus 74 ~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi--~GrKFDlRvyVLvts~~PL~vY~y~ 151 (520)
+++||+||++++||+||.+++++++|.++++.. .+.+|||+||++|+|| +|+|||||+|||||| ||+||+|+
T Consensus 147 ~~~wI~KP~~~srG~GI~l~~~~~~i~~~~~~~----~~~~VvQkYI~~PlLi~~~grKFDlR~Yvlvts--~l~vy~y~ 220 (380)
T 3tig_A 147 GNVWIAKSSSGAKGEGILISSDATELLDFIDNQ----GQVHVIQKYLESPLLLEPGHRKFDIRSWVLVDN--QYNIYLYR 220 (380)
T ss_dssp CCCEEEEESCC----CCBCCSCSHHHHHHHHHH----TSCEEEEECCSSBCCBTTTTBCEEEEEEEEECT--TCCEEECS
T ss_pred CCeEEEeCCccCCCCCEEEeCCHHHHHHHHhcc----CCcEEEEecccCceeecCCCceeEEEEEEEEcC--CCEEEEEc
Confidence 899999999999999999999999998876532 4689999999999999 999999999999998 99999999
Q ss_pred cceEEeecCCCCCCccc-cccccchhhhhhhc-ccCCCCCCCCCCCccCHHhHHHHHHHhcCCchhHH-HHHHHHHHHHH
Q psy10923 152 EGYVRFCSKPYSNILLD-EARHLTNVRIQKQY-RNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKWD-MIMRAMEESIV 228 (520)
Q Consensus 152 ~g~vRfat~~Y~~~nld-~~~HLTN~siqk~~-~~~~~~~~~~~~~~ws~~~l~~~L~~~~g~~~~w~-~I~~~Ik~ii~ 228 (520)
+|++|||+++|+.++++ .++||||+||||++ ++|.. .+.|++|++++|++||++..|. .|. .|+++|+++|+
T Consensus 221 ~g~~Rfa~~~y~~~~~~~~~~HLTN~~iqk~~~~~y~~---~~~g~~~~~~~f~~yL~~~~~~--~~~~~i~~~I~~ii~ 295 (380)
T 3tig_A 221 EGVLRTSSEPYSDTNFQDMTSHLTNHCIQKEHSKNYGR---YEEGNEMFFEEFNQYLVTSLNI--NLENSILCQIKEIIR 295 (380)
T ss_dssp CCEEEECC-------------------------------------CCBCHHHHHHHHSTTSSC--CHHHHTHHHHHHHHH
T ss_pred CCEEEecCCCcCccchhhhhhhcccccccccccccccc---ccCCCcCcHHHHHHHHHHhcCc--cHHHHHHHHHHHHHH
Confidence 99999999999999884 69999999999974 56652 3468999999999999885553 465 89999999999
Q ss_pred HHHHHhHhhhhhccCccceeeecccCCccccccccc-ceeeccccccccccccceEEEEecCCCCCCCcCcchhhhhhhh
Q psy10923 229 TIMRCAQMWYVITNIDKFKIWVYHEGYVRFCSKPYS-NILLDEARHLTNVRIQKQYRNVRDPPQLPADLGDYNFLNYISE 307 (520)
Q Consensus 229 ~t~~aa~~~~~~~~~~~Fe~~~~~~g~~~~cfel~G-D~llD~~~kp~~~~~~~wLLEVN~sPsl~~~~~d~~i~~~i~~ 307 (520)
+++.|+++.+... +....|||+|| |||||++++| ||||||.+|++++. -+.+|+.+
T Consensus 296 ~~l~a~~~~i~~~------------~~~~~~FEl~G~D~lid~~l~~-------wllEVN~~P~~~q~----~i~~l~~~ 352 (380)
T 3tig_A 296 VCLSCLEPAISTK------------YLPYHSFQLFGFDFMVDKNLKV-------WLIEVNGAPACAQK----LYAELCKG 352 (380)
T ss_dssp HHHHHHHHHHCCT------------TSSSEECEEEEEEEEEBTTCCE-------EEEEEESSCCCCTT----THHHHHHH
T ss_pred HHHHHHHHHhhhc------------ccCCceEEEEeEEEEEcCCCcE-------EEEEEeCCCCccHH----hHHHHHHH
Confidence 9999999887521 11236999999 9999999999 99999999999863 22456666
Q ss_pred hhHHH
Q psy10923 308 MTDYV 312 (520)
Q Consensus 308 ~~d~v 312 (520)
++++.
T Consensus 353 ~~~ia 357 (380)
T 3tig_A 353 IVDLA 357 (380)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 65543
No 2
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=98.21 E-value=1.1e-05 Score=82.18 Aligned_cols=57 Identities=21% Similarity=0.227 Sum_probs=45.4
Q ss_pred cceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEE
Q psy10923 74 NVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYV 138 (520)
Q Consensus 74 ~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVL 138 (520)
+-.-|+||..|++|+|+.++++.+++...++.+.. ....+++|+||. ..+|+|++|+
T Consensus 152 g~PvVvK~~~Gs~G~GV~lv~~~~~~~~~~~~~~~-~~~~~~vQefI~-------~g~DiRv~Vv 208 (309)
T 1i7n_A 152 TFPVVVKIGHAHSGMGKVKVENHYDFQDIASVVAL-TQTYATAEPFID-------AKYDIRVQKI 208 (309)
T ss_dssp CSSEEEEESSCSTTTTEEEECSHHHHHHHHHHHHH-HTCCEEEEECCC-------EEEEEEEEEE
T ss_pred CCCEEEEeCCCCceeCeEEECCHHHHHHHHHHHhc-cCCeEEEEeecC-------CCceEEEEEE
Confidence 34679999999999999999999988777653221 135677999997 2499999998
No 3
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=98.14 E-value=1.2e-05 Score=82.92 Aligned_cols=57 Identities=16% Similarity=0.210 Sum_probs=44.9
Q ss_pred cceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEE
Q psy10923 74 NVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYV 138 (520)
Q Consensus 74 ~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVL 138 (520)
+-.-|+||..|++|+|+.++++.+++...++.+.. ....+++|+||. .++|+|++|+
T Consensus 169 g~PvVvK~~~Gs~G~GV~lve~~~~~~~~~~~~~~-~~~~~~vQefI~-------~g~DiRv~VV 225 (344)
T 2p0a_A 169 HFPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAM-AKTYATTEAFID-------SKYDIRIQKI 225 (344)
T ss_dssp SSSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHH-HTCCEEEEECCC-------EEEEEEEEEE
T ss_pred CCCEEEEeCCCCceeCeEEECCHHHHHHHHHHHhc-cCCeEEEEeccC-------CCccEEEEEE
Confidence 33669999999999999999999988876653211 134677999997 2599999998
No 4
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=98.09 E-value=2e-05 Score=82.99 Aligned_cols=57 Identities=21% Similarity=0.229 Sum_probs=45.5
Q ss_pred cceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEE
Q psy10923 74 NVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYV 138 (520)
Q Consensus 74 ~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVL 138 (520)
+-.-|+||..|++|+|+.++++.+++...++.+.. ....+++|+||. .++|||++|+
T Consensus 264 g~PvVvKp~~GS~G~GV~lve~~~~l~~ii~~~~~-~~~~~~vQEfI~-------~g~DIRv~VV 320 (422)
T 1pk8_A 264 TYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVAL-TKTYATAEPFID-------AKYDVRVQKI 320 (422)
T ss_dssp SSSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHH-HTSCEEEEECCC-------EEEEEEEEEE
T ss_pred CCCEEEEeCCCCceeCeEEeCCHHHHHHHHHHHhc-cCceEEEEeecC-------CCceEEEEEE
Confidence 33669999999999999999999988877753221 135677999997 2599999998
No 5
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=97.93 E-value=0.00016 Score=73.94 Aligned_cols=58 Identities=14% Similarity=0.237 Sum_probs=45.6
Q ss_pred cceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEEEe
Q psy10923 74 NVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVIT 140 (520)
Q Consensus 74 ~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVLvt 140 (520)
+-.+|+||..++.|.||.++++.+++...++.... ....++||+||. |+ ++++.|+..
T Consensus 165 g~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~-~~~~vlvEe~I~------G~--E~~v~vl~~ 222 (346)
T 3se7_A 165 TYPVFVKPARSGSSFGVSKVAREEDLQGAVEAARE-YDSKVLIEEAVI------GT--EIGCAVMGN 222 (346)
T ss_dssp CSSEEEEESSCCTTTTCEEECSHHHHHHHHHHHTT-TCSEEEEEECCC------SE--EEEEEEEEE
T ss_pred CCCEEEEeCCCCCCcCEEEECCHHHHHHHHHHHHh-CCCcEEEEeCcC------CE--EEEEEEEec
Confidence 44689999999999999999999999887764321 256899999996 64 677777653
No 6
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=97.92 E-value=0.00011 Score=72.77 Aligned_cols=58 Identities=14% Similarity=0.244 Sum_probs=45.0
Q ss_pred CCcceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEE
Q psy10923 72 GVNVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYV 138 (520)
Q Consensus 72 ~~~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVL 138 (520)
..+-.+|+||..++.|+|+.++++.+++....+.... ....++||+||+ |+ ++++.++
T Consensus 136 ~~~~p~vvKP~~g~~~~gv~~v~~~~el~~~~~~~~~-~~~~~lvee~i~------g~--e~~v~~~ 193 (306)
T 1iow_A 136 ALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQ-HDEEVLIEKWLS------GP--EFTVAIL 193 (306)
T ss_dssp TTCSSEEEEETTCCTTTTCEEESSGGGHHHHHHHHTT-TCSEEEEEECCC------CC--EEEEEEE
T ss_pred ccCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHh-hCCCEEEEeCcC------CE--EEEEEEE
Confidence 3344789999999999999999999998877654321 146899999997 54 6777665
No 7
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=97.91 E-value=6.3e-05 Score=75.47 Aligned_cols=53 Identities=21% Similarity=0.282 Sum_probs=37.5
Q ss_pred ceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccC----CCCcceeeeccccccccccceeee
Q psy10923 75 VVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNL----TCPRCVVQKYIEKPLLIHGVKFDL 133 (520)
Q Consensus 75 ~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~----~~~~~VvQkYI~~PlLi~GrKFDl 133 (520)
..+|+||..++.|+|+.++++.+++....+.+... ....++||+||+ |..+++
T Consensus 127 ~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~lvee~i~------G~e~~~ 183 (334)
T 2r85_A 127 KPVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQEYVL------GVPVYP 183 (334)
T ss_dssp SCEEEEECC----TTCEEESSHHHHHHHHHHHHCCCSGGGCCSEEEEECCC------CEEEEE
T ss_pred CCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhcccCCCCcEEEEeccC------CceeEE
Confidence 57899999999999999999999988776543210 136899999997 555553
No 8
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=97.86 E-value=0.00013 Score=74.29 Aligned_cols=58 Identities=12% Similarity=0.250 Sum_probs=44.9
Q ss_pred cceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEEEe
Q psy10923 74 NVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVIT 140 (520)
Q Consensus 74 ~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVLvt 140 (520)
+-.+|+||..++.|.||.++++.+++...++.... ....++||+||. |+ ++++.|+..
T Consensus 165 ~~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~-~~~~~lvEe~I~------G~--E~~v~vl~~ 222 (343)
T 1e4e_A 165 TYPVFVKPARSGSSFGVKKVNSADELDYAIESARQ-YDSKILIEQAVS------GC--EVGCAVLGN 222 (343)
T ss_dssp CSCEEEEESSCCTTTTCEEECSGGGHHHHHHHHTT-TCSSEEEEECCC------SE--EEEEEEEEE
T ss_pred CCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHh-cCCcEEEEeCcC------Ce--EEEEEEEeC
Confidence 34799999999999999999999998877664321 256899999996 65 566666643
No 9
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=97.82 E-value=8.5e-05 Score=76.40 Aligned_cols=57 Identities=18% Similarity=0.158 Sum_probs=45.0
Q ss_pred cceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEEE
Q psy10923 74 NVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVI 139 (520)
Q Consensus 74 ~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVLv 139 (520)
+-.+|+||..++.|.||.++++.+++...++.... ....++||+||. |+ ++++.|+.
T Consensus 171 g~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~~-~~~~~lvEe~I~------G~--E~~v~vl~ 227 (364)
T 2i87_A 171 NYPVFVKPANLGSSVGISKCNNEAELKEGIKEAFQ-FDRKLVIEQGVN------AR--EIEVAVLG 227 (364)
T ss_dssp CSSEEEEESSCSSCTTCEEESSHHHHHHHHHHHHT-TCSEEEEEECCC------CE--EEEEEEEE
T ss_pred CCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHh-cCCeEEEEeCcc------Ce--EEEEEEEc
Confidence 34789999999999999999999998877664321 256899999997 54 66777765
No 10
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=97.78 E-value=6.3e-05 Score=75.74 Aligned_cols=56 Identities=16% Similarity=0.199 Sum_probs=38.4
Q ss_pred ceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEE
Q psy10923 75 VVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYV 138 (520)
Q Consensus 75 ~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVL 138 (520)
-.+|+||..++.|.|+.++++.+++...++.... ....++||+||.. |+ ++++.|+
T Consensus 147 ~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~-~~~~~lvEe~i~~-----G~--E~~v~vl 202 (317)
T 4eg0_A 147 LPLFVKPASEGSSVAVLKVKTADALPAALSEAAT-HDKIVIVEKSIEG-----GG--EYTACIA 202 (317)
T ss_dssp SCEEEEECC-----CCEEECSGGGHHHHHHHHTT-TCSEEEEEECCCS-----SE--EEEEEEE
T ss_pred CCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHh-CCCeEEEEcCCCC-----Cc--EEEEEEE
Confidence 3689999999999999999999998877654321 2568999999973 53 5666555
No 11
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=97.77 E-value=0.00018 Score=74.07 Aligned_cols=54 Identities=24% Similarity=0.419 Sum_probs=40.8
Q ss_pred cCCcceEEEcCCC--CCCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEE
Q psy10923 71 HGVNVVRVLKPVA--NCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYV 138 (520)
Q Consensus 71 ~~~~~~WI~KP~~--~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVL 138 (520)
.+.+-..|+||.. |+.|.|+.++.+.+++..+ ..+++||+||+. +| .|+|+||+
T Consensus 159 ~~lg~P~VvKP~~g~Gs~s~~v~~v~~~~~l~~~--------~~~~lvQefI~~----~G--~dirv~Vv 214 (346)
T 2q7d_A 159 NGLTFPFICKTRVAHGTNSHEMAIVFNQEGLNAI--------QPPCVVQNFINH----NA--VLYKVFVV 214 (346)
T ss_dssp TTCCSSEEEECSBCSSTTCCEEEEECSGGGTTC----------CCEEEEECCCC----TT--EEEEEEEE
T ss_pred cCCCCCEEEEecCCCcceeeeeEEecCHHHHHhc--------CCCEEEEEeeCC----CC--eEEEEEEE
Confidence 3445678999985 3458899999998876542 357999999974 45 69999996
No 12
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=97.69 E-value=0.00011 Score=75.56 Aligned_cols=48 Identities=21% Similarity=0.248 Sum_probs=38.9
Q ss_pred CcceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccc
Q psy10923 73 VNVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIE 121 (520)
Q Consensus 73 ~~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~ 121 (520)
-+-.+|+||..+..|+|+.++++.+++......... ....+++|+||.
T Consensus 176 lg~PvvVKP~~gg~s~Gv~~v~~~~el~~~~~~a~~-~~~~vlvE~~i~ 223 (357)
T 4fu0_A 176 LTYPLFIKPVRAGSSFGITKVIEKQELDAAIELAFE-HDTEVIVEETIN 223 (357)
T ss_dssp CCSSEEEEETTCSSSTTCEEESSHHHHHHHHHHHTT-TCSEEEEEECCC
T ss_pred cCCCEEEEECCCCCCCceEEeccHHhHHHHHHHHhc-cCCeEEEEEecC
Confidence 345789999999999999999999999887664322 256789999985
No 13
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=97.68 E-value=1.8e-05 Score=82.53 Aligned_cols=100 Identities=18% Similarity=0.342 Sum_probs=72.6
Q ss_pred ccccchhhHHHhcC-ccccccCCCCccccccccccccccCCCccccccCCCcccchhhhHhhHHHHHHhhccCCCcEEee
Q psy10923 351 GYYPAVRHKLVNMG-WVEKIDSKRTYTDFTLRKEFMLTNLDSAPYIIKNEKPEQVTSQYYEQKYMSDALAERKPDLLFAL 429 (520)
Q Consensus 351 g~~p~ir~~L~~RG-w~EKk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~l~~~~p~fiWt~ 429 (520)
..|..||..|+++| |.|.... +..-+++|+.
T Consensus 15 svy~~V~~vL~~~g~w~ev~~~------------------------------------------------~~~~dl~W~~ 46 (380)
T 3tig_A 15 TVYAEVAKILLASGQWKRLKRD------------------------------------------------NPKFNLMLGE 46 (380)
T ss_dssp HHHHHHHHHHHHTTSEEECCTT------------------------------------------------CSCCSEEECC
T ss_pred cHHHHHHHHHHhcCCeEEeCCC------------------------------------------------CCceeEEEec
Confidence 45889999999999 9995331 0123777886
Q ss_pred cccccccccC----CCCeEeccCCC-CCchhhhhHHhhhccCCCcccCCCCCcCCccccCC-c-----------------
Q psy10923 430 RKNYITWSAL----EPDTVVSYFPK-CNFCSKLGLNICLESTPVFKNDSDSLKYPRGFNMS-N----------------- 486 (520)
Q Consensus 430 ~~~~~~~~~l----~~~~~~n~~~~-~~fttKvGLc~~l~~l~w~~~~~~~~~fPRcY~l~-~----------------- 486 (520)
+. ...|..| ...|.||||++ ..+|.|.-|+.||+... + -...-.|||++|.|. .
T Consensus 47 ~~-~~p~~~l~~~p~~~Q~vNhfPg~~~l~rKd~L~~nl~~~~-~-~~~~~~f~P~ty~L~P~~~~~p~~~~~~~~~~~~ 123 (380)
T 3tig_A 47 RN-RLPFGRLGHEPGLVQLVNYYRGADKLCRKASLVKLIKTSP-E-LTETCTWFPESYVIYPTNEKTPAMRARNGLPDLA 123 (380)
T ss_dssp SS-SCCGGGSSCSTTCCCEESCCTTTHHHHSHHHHHHHHHHCH-H-HHTTCTTSCCEEECCC------------------
T ss_pred CC-CCCHHHhccCCCcceEEeecCCcccccccHHHHHHHHHhh-h-cccccCcCCcceeeCccccccccccccccccccc
Confidence 54 3445544 45799999999 55999999999998743 1 234567999999993 2
Q ss_pred ----hHHHHHHHHHHHHHH
Q psy10923 487 ----EISMRRFVQNFRETS 501 (520)
Q Consensus 487 ----~~~~~~Fi~df~~ta 501 (520)
.+|.++|++.|+..+
T Consensus 124 ~~~~~~E~~~F~~~~~~~~ 142 (380)
T 3tig_A 124 NAPRTDEREEFRSSFNKKK 142 (380)
T ss_dssp ------CCHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHhh
Confidence 157899999998764
No 14
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=97.65 E-value=0.0003 Score=73.10 Aligned_cols=57 Identities=14% Similarity=0.092 Sum_probs=42.2
Q ss_pred cce-EEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEEE
Q psy10923 74 NVV-RVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVI 139 (520)
Q Consensus 74 ~~~-WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVLv 139 (520)
+-. +|+||..+..|.||.++++.+++...++.... ....++||+||. |+ ++++-|+.
T Consensus 179 g~P~vvVKP~~ggss~Gv~~v~~~~eL~~a~~~a~~-~~~~vlVEe~I~------G~--E~~v~vl~ 236 (372)
T 3tqt_A 179 GTSELFVKAVSLGSSVATLPVKTETEFTKAVKEVFR-YDDRLMVEPRIR------GR--EIECAVLG 236 (372)
T ss_dssp ---CEEEEESSCCSGGGEEEECSHHHHHHHHHHHTT-TCSCEEEEECCC------SE--EEEEEEEE
T ss_pred CCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHh-cCCCEEEECCCC------CE--EEEEEEEe
Confidence 345 89999999999999999999999887654321 256899999996 54 45555554
No 15
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=97.64 E-value=0.00032 Score=73.09 Aligned_cols=56 Identities=14% Similarity=0.179 Sum_probs=42.8
Q ss_pred ceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEEE
Q psy10923 75 VVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVI 139 (520)
Q Consensus 75 ~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVLv 139 (520)
-.+|+||..++.|.||.++++.+++...++.... ....++||+||. |+ ++.+-|+.
T Consensus 199 ~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~-~~~~vlVEe~I~------G~--E~~v~vl~ 254 (386)
T 3e5n_A 199 LPLFVKPANQGSSVGVSQVRTADAFAAALALALA-YDHKVLVEAAVA------GR--EIECAVLG 254 (386)
T ss_dssp SSEEEEESBSCSSTTCEEECSGGGHHHHHHHHTT-TCSEEEEEECCC------SE--EEEEEEEC
T ss_pred CCEEEEECCCCcCCCEEEECCHHHHHHHHHHHHh-CCCcEEEEcCCC------Ce--EEEEEEEe
Confidence 3689999999999999999999998877664321 256799999996 53 45555553
No 16
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=97.61 E-value=0.00089 Score=67.68 Aligned_cols=56 Identities=21% Similarity=0.249 Sum_probs=43.4
Q ss_pred cceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeecccccccccc-ceeeeeEEEE
Q psy10923 74 NVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHG-VKFDLRVWYV 138 (520)
Q Consensus 74 ~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~G-rKFDlRvyVL 138 (520)
+-.+|+||..++.|.|+.++++.+++...++.... ....++||+||. | + ++++-|+
T Consensus 150 g~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~~-~~~~vlvEe~I~------G~~--E~~v~vl 206 (322)
T 2fb9_A 150 DPPFFVKPANTGSSVGISRVERFQDLEAALALAFR-YDEKAVVEKALS------PVR--ELEVGVL 206 (322)
T ss_dssp CSCEEEEETTCCTTTTCEEESSHHHHHHHHHHHTT-TCSEEEEEECCS------SCE--EEEEEEE
T ss_pred CCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHh-cCCeEEEEeCCC------CCe--eEEEEEE
Confidence 34789999999999999999999998887664321 256899999996 4 4 5555555
No 17
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=97.56 E-value=0.00022 Score=70.98 Aligned_cols=55 Identities=22% Similarity=0.341 Sum_probs=39.0
Q ss_pred ceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEE
Q psy10923 75 VVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYV 138 (520)
Q Consensus 75 ~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVL 138 (520)
-.+|+||..++.|.|+.++.+.+++...++.... ....++||+||. |+ ++++.++
T Consensus 134 ~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~~-~~~~~lvee~i~------G~--e~~v~v~ 188 (307)
T 3r5x_A 134 FPLVVKPNSGGSSVGVKIVYDKDELISMLETVFE-WDSEVVIEKYIK------GE--EITCSIF 188 (307)
T ss_dssp SSEEEEECC----CCCEEECSHHHHHHHHHHHHH-HCSEEEEEECCC------SE--EEEEEEE
T ss_pred CCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHh-cCCCEEEECCcC------CE--EEEEEEE
Confidence 3689999999999999999999998877654221 146899999997 54 6666663
No 18
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=97.49 E-value=0.0016 Score=67.29 Aligned_cols=60 Identities=20% Similarity=0.376 Sum_probs=40.7
Q ss_pred CCcceEEEcCCCCCCCCceEEeCChHHHHHHHhhccc-CCCCcceeeeccccccccccceeeeeEEE
Q psy10923 72 GVNVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-LTCPRCVVQKYIEKPLLIHGVKFDLRVWY 137 (520)
Q Consensus 72 ~~~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~-~~~~~~VvQkYI~~PlLi~GrKFDlRvyV 137 (520)
..+-.+|+||..++.|+|+.++++.+++....+.... .....++||+||+ |.-|++.+++
T Consensus 142 ~~g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~------g~e~sv~~~~ 202 (403)
T 4dim_A 142 NLKLPVIVKATDLQGSKGIYIAKKEEEAIDGFNETMNLTKRDYCIVEEFIE------GYEFGAQAFV 202 (403)
T ss_dssp TSCSSEEEECSCC-----CEEESSHHHHHHHHHHHHHHCSSSCCEEEECCC------SEEEEEEEEE
T ss_pred cCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhcCcCCcEEEEEccC------CcEEEEEEEE
Confidence 3345699999999999999999999998877664321 1246799999997 5566666553
No 19
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=97.44 E-value=0.00026 Score=73.90 Aligned_cols=56 Identities=20% Similarity=0.217 Sum_probs=36.8
Q ss_pred cceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEE
Q psy10923 74 NVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYV 138 (520)
Q Consensus 74 ~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVL 138 (520)
+-.+|+||..+..|.||.++++.+++...++.... ....++||+||. |+ ++.+-|+
T Consensus 201 g~PvvVKP~~ggss~GV~~v~~~~el~~al~~a~~-~~~~vlVEe~I~------G~--E~~v~vl 256 (383)
T 3k3p_A 201 IYPVFVKPANMGSSVGISKAENRTDLKQAIALALK-YDSRVLIEQGVD------AR--EIEVGIL 256 (383)
T ss_dssp CSSEEEEECC------CEEESSHHHHHHHHHHHHH-HCSEEEEEECCC------SE--EEEEEEE
T ss_pred CCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHh-CCCeEEEEcCCC------Ce--EEEEEEE
Confidence 34689999999999999999999998877653211 156899999996 65 4455555
No 20
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=97.41 E-value=0.00073 Score=69.62 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=42.8
Q ss_pred ceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEEE
Q psy10923 75 VVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVI 139 (520)
Q Consensus 75 ~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVLv 139 (520)
-.+|+||..+..|.||.++++.+++...++.... ....++||+||. |+ ++.+-|+.
T Consensus 180 ~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~-~~~~vlVEe~I~------G~--E~~v~vl~ 235 (364)
T 3i12_A 180 LPLFVKPANQGSSVGVSKVANEAQYQQAVALAFE-FDHKVVVEQGIK------GR--EIECAVLG 235 (364)
T ss_dssp SSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHH-HCSEEEEEECCC------SE--EEEEEEEE
T ss_pred CCEEEEECCCCCCcCeEEeCCHHHHHHHHHHHHh-cCCcEEEEcCcC------Ce--EEEEEEEe
Confidence 3689999999999999999999998877653211 146899999996 64 55565553
No 21
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=97.39 E-value=0.00075 Score=67.60 Aligned_cols=50 Identities=22% Similarity=0.386 Sum_probs=40.2
Q ss_pred ceEEEcCCCCCCC---CceEEeCChHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEE
Q psy10923 75 VVRVLKPVANCSG---HGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYV 138 (520)
Q Consensus 75 ~~WI~KP~~~srG---~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVL 138 (520)
-.+|+||..++.| +|+.++.+.+++.. ....++||+||.. .| +|+|++|+
T Consensus 136 ~P~vvKP~~g~g~~~s~gv~~v~~~~~l~~--------~~~~~lvqe~i~~----~g--~~~~v~v~ 188 (324)
T 1z2n_X 136 LPFIVKPENAQGTFNAHQMKIVLEQEGIDD--------IHFPCLCQHYINH----NN--KIVKVFCI 188 (324)
T ss_dssp SSEEEEESBCSSSSGGGEEEEECSGGGGTT--------CCSSEEEEECCCC----TT--CEEEEEEE
T ss_pred CCEEEeeCCCCCCccceeeEEEeCHHHHhh--------cCCCEEEEEccCC----CC--cEEEEEEE
Confidence 4789999999999 99999998776542 1468999999974 23 79999886
No 22
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=97.39 E-value=0.0015 Score=67.57 Aligned_cols=44 Identities=23% Similarity=0.417 Sum_probs=36.6
Q ss_pred ceEEEcCCCCCC-CCceEEeCChHHHHHHHhhcccCCCCcceeeeccc
Q psy10923 75 VVRVLKPVANCS-GHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIE 121 (520)
Q Consensus 75 ~~WI~KP~~~sr-G~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~ 121 (520)
-.+|+||..+.. |+|+.++++.+++....+... ...++||+||.
T Consensus 148 ~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~---~~~~lvEe~i~ 192 (389)
T 3q2o_A 148 YPSVLKTTTGGYDGKGQVVLRSEADVDEARKLAN---AAECILEKWVP 192 (389)
T ss_dssp SSEEEEESSCCSSSCCEEEESSGGGHHHHHHHHH---HSCEEEEECCC
T ss_pred CCEEEEeCCCCCCCCCeEEECCHHHHHHHHHhcC---CCCEEEEeccc
Confidence 468999999864 899999999999887766543 46899999997
No 23
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=97.34 E-value=0.0019 Score=67.46 Aligned_cols=44 Identities=23% Similarity=0.202 Sum_probs=37.0
Q ss_pred ceEEEcCCCCC-CCCceEEeCChHHHHHHHhhcccCCCCcceeeeccc
Q psy10923 75 VVRVLKPVANC-SGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIE 121 (520)
Q Consensus 75 ~~WI~KP~~~s-rG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~ 121 (520)
-.+|+||..++ .|+|+.++++.+++....+.+. ...++||+||.
T Consensus 161 ~P~VvKp~~gg~~g~Gv~~v~~~~el~~a~~~~~---~~~~lvEe~i~ 205 (403)
T 3k5i_A 161 YPLMLKSKTMAYDGRGNFRVNSQDDIPEALEALK---DRPLYAEKWAY 205 (403)
T ss_dssp SSEEEEESSSCCTTTTEEEECSTTSHHHHHHHTT---TSCEEEEECCC
T ss_pred CCEEEEeCCCCcCCCCEEEECCHHHHHHHHHhcC---CCcEEEecCCC
Confidence 46899998886 9999999999999887766542 56899999996
No 24
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=97.33 E-value=0.00025 Score=68.96 Aligned_cols=58 Identities=24% Similarity=0.246 Sum_probs=39.6
Q ss_pred ceEEEcCCCCCCCCceEEeCChHHHHHHHhhc---ccCCCCcceeeeccccccccccceeeeeEEEE
Q psy10923 75 VVRVLKPVANCSGHGIRIYRQLEDIKRAIGTL---KNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYV 138 (520)
Q Consensus 75 ~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~---~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVL 138 (520)
-.+|+||..++.|+|+.++++.+++....+.. .......++||+||+. ..+++|++++
T Consensus 124 ~p~vvKp~~g~~~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvqe~i~~------~~~e~~v~v~ 184 (280)
T 1uc8_A 124 YPVVLKPVIGSWGRLLAXXXXXXXXXXXXXXKEVLGGFQHQLFYIQEYVEK------PGRDIRVFVV 184 (280)
T ss_dssp SSEEEECSBCCBCSHHHHHHHHHC------------CTTTTCEEEEECCCC------SSCCEEEEEE
T ss_pred CCEEEEECCCCCcccceecccccccchhhhhHhhhcccCCCcEEEEeccCC------CCceEEEEEE
Confidence 37899999999999999998887776655432 1111468999999973 4588998885
No 25
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=97.32 E-value=0.0012 Score=68.33 Aligned_cols=48 Identities=15% Similarity=0.322 Sum_probs=38.5
Q ss_pred CcceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccc
Q psy10923 73 VNVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIE 121 (520)
Q Consensus 73 ~~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~ 121 (520)
.+-.+|+||..++.|.|+.++++.+++...++.... ....++||+||.
T Consensus 184 lg~PvvVKP~~g~ss~Gv~~v~~~~el~~a~~~~~~-~~~~vlVEe~I~ 231 (367)
T 2pvp_A 184 FNFPFIVKPSNAGSSLGVNVVKEEKELIYALDSAFE-YSKEVLIEPFIQ 231 (367)
T ss_dssp SCSCEEEEESSCCTTTTCEEESSTTSHHHHHHHHTT-TCSCEEEEECCT
T ss_pred cCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHh-cCCcEEEEeCCC
Confidence 345799999999999999999999888877654321 256899999996
No 26
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=97.30 E-value=0.0011 Score=68.68 Aligned_cols=56 Identities=16% Similarity=0.176 Sum_probs=43.5
Q ss_pred ceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeecccccccccc-ceeeeeEEEEE
Q psy10923 75 VVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHG-VKFDLRVWYVI 139 (520)
Q Consensus 75 ~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~G-rKFDlRvyVLv 139 (520)
-.+|+||..++.|.||.++++.+++...++.... ....++||+||. | + ++++-|+.
T Consensus 175 ~PvvVKP~~~~~s~Gv~~v~~~~el~~a~~~~~~-~~~~vlvEe~I~------G~~--E~~v~vl~ 231 (377)
T 1ehi_A 175 NIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQ-YDYKVLIEEAVN------GAR--ELEVGVIG 231 (377)
T ss_dssp SCEEEEESSCCTTTTEEEECSHHHHHHHHHHHTT-TCSCEEEEECCC------CSC--EEEEEEEE
T ss_pred CCEEEEeCCCCCCcCEEEeCCHHHHHHHHHHHHh-cCCcEEEEcCCC------CCc--eEEEEEEc
Confidence 4689999999999999999999999887764321 246899999996 4 4 55666654
No 27
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=97.30 E-value=0.0047 Score=64.93 Aligned_cols=44 Identities=20% Similarity=0.305 Sum_probs=38.1
Q ss_pred ceEEEcCC-CCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccc
Q psy10923 75 VVRVLKPV-ANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIE 121 (520)
Q Consensus 75 ~~WI~KP~-~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~ 121 (520)
-.+|+||. .++.|+|+.++++.+++....+.+. ...++||+||.
T Consensus 172 ~P~VvKp~~~g~~G~Gv~~v~~~~el~~a~~~~~---~~~~lvEe~i~ 216 (419)
T 4e4t_A 172 LPGILKTARLGYDGKGQVRVSTAREARDAHAALG---GVPCVLEKRLP 216 (419)
T ss_dssp CSEEEEESSSCCTTTTEEEECSHHHHHHHHHHTT---TCCEEEEECCC
T ss_pred CCEEEEecCCCCCCCceEEECCHHHHHHHHHhcC---CCcEEEeecCC
Confidence 46899999 8999999999999999988776542 57899999997
No 28
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=97.15 E-value=0.0039 Score=64.05 Aligned_cols=58 Identities=21% Similarity=0.292 Sum_probs=40.0
Q ss_pred ceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccC---CCCcceeeeccccccccccceeeeeEEEEE
Q psy10923 75 VVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNL---TCPRCVVQKYIEKPLLIHGVKFDLRVWYVI 139 (520)
Q Consensus 75 ~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~---~~~~~VvQkYI~~PlLi~GrKFDlRvyVLv 139 (520)
-.+|+||..++.|+|+.++++.+++....+..... ....++||+||+. |+ ++++.++.
T Consensus 149 ~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~-----g~--E~sv~~~~ 209 (391)
T 1kjq_A 149 YPCIVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKF-----DF--EITLLTVS 209 (391)
T ss_dssp SSEEEEESCC---CCCEEECSGGGHHHHHHHHHHHSGGGCCCEEEEECCCC-----SE--EEEEEEEE
T ss_pred CCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEEecCC-----Ce--EEEEEEEE
Confidence 36899999999999999999999888766543210 1468999999973 33 55665554
No 29
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=97.12 E-value=0.0045 Score=64.41 Aligned_cols=57 Identities=26% Similarity=0.399 Sum_probs=43.8
Q ss_pred ceEEEcCCCCCCCCceEEeCChHHHHHHHhhccc-CCCCcceeeeccccccccccceeeeeEEEEE
Q psy10923 75 VVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-LTCPRCVVQKYIEKPLLIHGVKFDLRVWYVI 139 (520)
Q Consensus 75 ~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~-~~~~~~VvQkYI~~PlLi~GrKFDlRvyVLv 139 (520)
-.+|+||..++.|+|+.++++.+++....+.+.. .-...++||+||+ |+ ++++.++.
T Consensus 137 ~P~vvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~------g~--E~sv~~~~ 194 (417)
T 2ip4_A 137 VPVVVKDSGLAAGKGVTVAFDLHQAKQAVANILNRAEGGEVVVEEYLE------GE--EATVLALT 194 (417)
T ss_dssp SSEEEECTTSCSSTTCEEESCHHHHHHHHHHHTTSSSCCCEEEEECCC------SC--EEEEEEEE
T ss_pred CCEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHhhccCCeEEEEECcc------Cc--EEEEEEEE
Confidence 4789999999999999999999999887765421 1126899999997 33 66666664
No 30
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=97.11 E-value=0.0051 Score=64.71 Aligned_cols=58 Identities=19% Similarity=0.284 Sum_probs=43.4
Q ss_pred ceEEEcCCCCCCCCceEEeCChHHHHHHHhhccc-----CCCCcceeeeccccccccccceeeeeEEEEE
Q psy10923 75 VVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-----LTCPRCVVQKYIEKPLLIHGVKFDLRVWYVI 139 (520)
Q Consensus 75 ~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~-----~~~~~~VvQkYI~~PlLi~GrKFDlRvyVLv 139 (520)
-.+|+||..++.|+|+.++++.+++....+.... -....++||+||+-+ -++++-++.
T Consensus 152 ~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~-------~e~~v~v~~ 214 (451)
T 2vpq_A 152 YPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENF-------RHIEIQIVG 214 (451)
T ss_dssp SSEEEEETTCCTTCSEEEESSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCCSE-------EEEEEEEEE
T ss_pred CcEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCC-------eEEEEEEEE
Confidence 4689999999999999999999998877653311 014689999999843 256666554
No 31
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=97.10 E-value=0.0022 Score=65.83 Aligned_cols=53 Identities=21% Similarity=0.270 Sum_probs=37.2
Q ss_pred CcceEEEcCCCCC-CCCceEEeCChHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEEE
Q psy10923 73 VNVVRVLKPVANC-SGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVI 139 (520)
Q Consensus 73 ~~~~WI~KP~~~s-rG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVLv 139 (520)
.+-.+|+||..++ .|+|+.++++.+++.... ...++||+||+. | .++++.++.
T Consensus 131 ~~~P~vvKp~~~~y~g~Gv~~v~~~~el~~~~-------~~~~lvEe~i~~-----g--~e~sv~~~~ 184 (380)
T 3ax6_A 131 FGFPVVQKARKGGYDGRGVFIIKNEKDLENAI-------KGETYLEEFVEI-----E--KELAVMVAR 184 (380)
T ss_dssp TCSSEEEEESCCC-----EEEECSGGGGGGCC-------CSSEEEEECCCE-----E--EEEEEEEEE
T ss_pred cCCCEEEEecCCCCCCCCeEEECCHHHHHHHh-------cCCEEEEeccCC-----C--eeEEEEEEE
Confidence 3447999999999 999999999988875432 157999999973 3 467776665
No 32
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=97.09 E-value=0.012 Score=59.95 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=39.5
Q ss_pred CcceEEEcCCCCC-CCCceEEeCChHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEEE
Q psy10923 73 VNVVRVLKPVANC-SGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVI 139 (520)
Q Consensus 73 ~~~~WI~KP~~~s-rG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVLv 139 (520)
.+-.+|+||..++ .|+|+.++++.+++....+.+. ...++||+||+. |+ ++.+.++.
T Consensus 130 ~g~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~---~~~~lvEe~i~~-----g~--e~sv~~~~ 187 (369)
T 3aw8_A 130 VGLPALLKTRRGGYDGKGQALVRTEEEALEALKALG---GRGLILEGFVPF-----DR--EVSLLAVR 187 (369)
T ss_dssp TCSSEEEEECCC------EEEECSHHHHHHHHTTTC---SSSEEEEECCCC-----SE--EEEEEEEE
T ss_pred cCCCEEEEEcCCCCCcceEEEECCHHHHHHHHHhcC---CCcEEEEEcCCC-----CE--EEEEEEEE
Confidence 3457999999999 9999999999999988776542 468999999973 44 45555554
No 33
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=97.09 E-value=0.0034 Score=64.96 Aligned_cols=56 Identities=18% Similarity=0.296 Sum_probs=43.2
Q ss_pred ceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEEE
Q psy10923 75 VVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVI 139 (520)
Q Consensus 75 ~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVLv 139 (520)
-.+|+||..++.|.||.++++.+++...++.... ....++||+||. |+ ++++-|+.
T Consensus 189 ~PvvVKP~~ggss~GV~~v~~~~eL~~a~~~a~~-~~~~vlVEe~I~------G~--E~~v~vl~ 244 (373)
T 3lwb_A 189 LPVFVKPARGGSSIGVSRVSSWDQLPAAVARARR-HDPKVIVEAAIS------GR--ELECGVLE 244 (373)
T ss_dssp SCEEEEESBCSTTTTCEEECSGGGHHHHHHHHHT-TCSSEEEEECCE------EE--EEEEEEEE
T ss_pred CCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHh-cCCCEEEeCCCC------Ce--EEEEEEEE
Confidence 3689999999999999999999998877654321 256899999997 54 55555554
No 34
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=97.07 E-value=0.0057 Score=64.38 Aligned_cols=58 Identities=22% Similarity=0.364 Sum_probs=43.5
Q ss_pred ceEEEcCCCCCCCCceEEeCChHHHHHHHhhccc-----CCCCcceeeeccccccccccceeeeeEEEEE
Q psy10923 75 VVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-----LTCPRCVVQKYIEKPLLIHGVKFDLRVWYVI 139 (520)
Q Consensus 75 ~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~-----~~~~~~VvQkYI~~PlLi~GrKFDlRvyVLv 139 (520)
-.+|+||..++.|+|+.++++.+++....+.... .....++||+||+.| + ++.+-++.
T Consensus 157 ~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~-----~--e~~v~v~~ 219 (446)
T 3ouz_A 157 YPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNP-----R--HIEVQVIG 219 (446)
T ss_dssp SSEEEEETTCCTTCSEEEECSGGGHHHHHHHHHHHHHHHHSCCCEEEEECCSSC-----E--EEEEEEEE
T ss_pred CCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCC-----c--EEEEEEEE
Confidence 4689999999999999999999998877653221 014689999999853 2 56666554
No 35
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=97.05 E-value=0.0063 Score=63.46 Aligned_cols=56 Identities=20% Similarity=0.377 Sum_probs=37.3
Q ss_pred cceEEEcCCCCCCCCceEEeCChHHHHHHHhhccc----------CCCCcceeeeccccccccccceeeeeE
Q psy10923 74 NVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN----------LTCPRCVVQKYIEKPLLIHGVKFDLRV 135 (520)
Q Consensus 74 ~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~----------~~~~~~VvQkYI~~PlLi~GrKFDlRv 135 (520)
+-.+|+||..++.|+|+.++++.+++....+.+.. .....+++|+||+ |.-|.+.+
T Consensus 145 g~P~vvKp~~g~gs~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~~~~lvEe~i~------G~e~sv~~ 210 (425)
T 3vot_A 145 SYPLVVKPVNGFSSQGVVRVDDRKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQFID------GPEFAIET 210 (425)
T ss_dssp CSSEEEEESCC-----CEEECSHHHHHHHHHHHHHHTTSSHHHHHTTCCCEEEEECCC------SCEEEEEE
T ss_pred CCcEEEEECCCCCCCCceEechHHHHHHHHHHHHhhhhhhhhhhccCCCcEEEEEEec------CcEEEEEE
Confidence 44689999999999999999999998876653211 1256799999996 55555544
No 36
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=96.98 E-value=0.0071 Score=63.95 Aligned_cols=48 Identities=17% Similarity=0.252 Sum_probs=38.4
Q ss_pred cceEEEcCCCCCCCCceEEeCChHHHHHHHhhccc-----CCCCcceeeeccc
Q psy10923 74 NVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-----LTCPRCVVQKYIE 121 (520)
Q Consensus 74 ~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~-----~~~~~~VvQkYI~ 121 (520)
+-.+|+||..++.|+|+.++++.+++....+.... .....+|||+||+
T Consensus 158 g~PvVvKp~~~~gg~GV~iv~~~eel~~a~~~~~~~~~~g~~~~~vlvEe~i~ 210 (442)
T 3lp8_A 158 KLPLVVKADGLAQGKGTVICHTHEEAYNAVDAMLVHHKFGEAGCAIIIEEFLE 210 (442)
T ss_dssp CSSEEEEESSCCTTTSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC
T ss_pred CCcEEEeECCCCCCCeEEEeCCHHHHHHHHHHHHhhcccCCCCCeEEEEEeec
Confidence 44689999999999999999999998877764321 0125799999997
No 37
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=96.97 E-value=0.0068 Score=62.57 Aligned_cols=45 Identities=18% Similarity=0.392 Sum_probs=37.4
Q ss_pred cceEEEcCCCCC-CCCceEEeCChHHHHHHHhhcccCCCCcceeeeccc
Q psy10923 74 NVVRVLKPVANC-SGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIE 121 (520)
Q Consensus 74 ~~~WI~KP~~~s-rG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~ 121 (520)
+-.+|+||..+. .|+|+.++++.+++....+... ...++||+||.
T Consensus 145 g~P~vvKp~~gg~~g~Gv~~v~~~~el~~a~~~~~---~~~~ivEe~i~ 190 (377)
T 3orq_A 145 GYPFIVKTRFGGYDGKGQVLINNEKDLQEGFKLIE---TSECVAEKYLN 190 (377)
T ss_dssp CSSEEEEESSSCCTTTTEEEECSTTSHHHHHHHHT---TSCEEEEECCC
T ss_pred CCCEEEEeCCCCCCCCCeEEECCHHHHHHHHHhcC---CCcEEEEccCC
Confidence 346899999986 8999999999999887766443 37899999997
No 38
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=96.96 E-value=0.0091 Score=62.75 Aligned_cols=58 Identities=24% Similarity=0.342 Sum_probs=43.3
Q ss_pred ceEEEcCCCCCCCCceEEeCChHHHHHHHhhccc-----CCCCcceeeeccccccccccceeeeeEEEEE
Q psy10923 75 VVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-----LTCPRCVVQKYIEKPLLIHGVKFDLRVWYVI 139 (520)
Q Consensus 75 ~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~-----~~~~~~VvQkYI~~PlLi~GrKFDlRvyVLv 139 (520)
-.+|+||..++.|+|+.++++.+++....+.... -....++||+||+.+ -++++-++.
T Consensus 152 ~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~-------~e~~v~v~~ 214 (451)
T 1ulz_A 152 YPVLLKATAGGGGRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIENP-------KHIEYQVLG 214 (451)
T ss_dssp SSEEEEECSSSSCCSCEEESSHHHHHHHHHHHHHHHHHTTSCCCEEEEECCCSC-------EEEEEEEEE
T ss_pred CCEEEEECCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEcccCC-------eEEEEEEEE
Confidence 4689999999999999999999998876653211 014589999999843 256666664
No 39
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=96.93 E-value=0.0069 Score=63.35 Aligned_cols=47 Identities=23% Similarity=0.297 Sum_probs=30.6
Q ss_pred ceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccC---CCCcceeeeccc
Q psy10923 75 VVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNL---TCPRCVVQKYIE 121 (520)
Q Consensus 75 ~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~---~~~~~VvQkYI~ 121 (520)
-.+|+||..++.|+|+.++++.+++....+..... ....++||+||+
T Consensus 157 ~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~ 206 (433)
T 2dwc_A 157 YPCHTKAIMSSSGKGSYFVKGPEDIPKAWEEAKTKARGSAEKIIVEEHID 206 (433)
T ss_dssp SSEEEEECCC------EEECSGGGHHHHHHC---------CCEEEEECCC
T ss_pred CCEEEEECCCcCCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEccCC
Confidence 36899999999999999999999988877643210 146799999997
No 40
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=96.91 E-value=0.013 Score=61.10 Aligned_cols=50 Identities=16% Similarity=0.143 Sum_probs=38.8
Q ss_pred CCcceEEEcCCCCCCCCceEEeCChHHHHHHHhhccc-----CCCCcceeeeccc
Q psy10923 72 GVNVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-----LTCPRCVVQKYIE 121 (520)
Q Consensus 72 ~~~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~-----~~~~~~VvQkYI~ 121 (520)
..+-.+|+||..++.|+|+.++++.+++....+.... .....++||+||+
T Consensus 139 ~~g~PvvvKp~~~~gg~Gv~~v~~~~el~~a~~~~~~~~~~~g~~~~vlvEe~i~ 193 (412)
T 1vkz_A 139 KFSPPYVIKADGLARGKGVLILDSKEETIEKGSKLIIGELIKGVKGPVVIDEFLA 193 (412)
T ss_dssp TSCSSEEEEESSCCSSCCEEEESSHHHHHHHHHHHHHTSSSTTCCSCEEEEECCC
T ss_pred hcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECCc
Confidence 3445799999999999999999999998877654321 0123899999996
No 41
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=96.87 E-value=0.0058 Score=62.26 Aligned_cols=57 Identities=14% Similarity=0.231 Sum_probs=20.4
Q ss_pred cceEEEcCCCCC-CCCceEEeCChHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEEE
Q psy10923 74 NVVRVLKPVANC-SGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVI 139 (520)
Q Consensus 74 ~~~WI~KP~~~s-rG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVLv 139 (520)
+-.+|+||..++ .|+|+.++++.+++....+.+.. ...++||+||+. |+ ++++.++.
T Consensus 126 ~~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~~--~~~~lvEe~i~~-----g~--e~sv~~~~ 183 (365)
T 2z04_A 126 KLPVVIKAEKLGYDGKGQYRIKKLEDANQVVKNHDK--EESFIIEEFVKF-----EA--EISCIGVR 183 (365)
T ss_dssp --CEEEECC--------------------------------CEEEECCCC-----SE--EEEEEEEE
T ss_pred CCCEEEEEcCCCcCCCCeEEECCHHHHHHHHHHhcc--CCCEEEEccCCC-----CE--EEEEEEEE
Confidence 447899999999 99999999999888776654322 468999999973 43 56666664
No 42
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=96.85 E-value=0.003 Score=71.45 Aligned_cols=57 Identities=28% Similarity=0.472 Sum_probs=45.2
Q ss_pred CcceEEEcCCCCCCCCceEEeC---ChHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEE
Q psy10923 73 VNVVRVLKPVANCSGHGIRIYR---QLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYV 138 (520)
Q Consensus 73 ~~~~WI~KP~~~srG~GI~l~~---~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVL 138 (520)
.+..+|+||..++.|+||.+++ +.+++...++.... ....++||+||. |+ |+|+.|+
T Consensus 519 ~g~PvVVKP~~G~~G~GV~iv~~~~s~eel~~a~~~~~~-~~~~vlVEefI~------G~--E~~v~Vv 578 (750)
T 3ln6_A 519 QDKPIVVKPKSTNFGLGISIFKTSANLASYEKAIDIAFT-EDSAILVEEYIE------GT--EYRFFVL 578 (750)
T ss_dssp SSSCEEEEETTCCSSSSCEEESSCCCHHHHHHHHHHHHH-HCSEEEEEECCC------SE--EEEEEEE
T ss_pred cCCcEEEEeCCCCCCCCEEEEeCCCCHHHHHHHHHHHHh-hCCcEEEEeccC------CC--EEEEEEE
Confidence 4567999999999999999998 88888776653211 156899999996 64 8999886
No 43
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=96.83 E-value=0.0054 Score=63.91 Aligned_cols=47 Identities=19% Similarity=0.355 Sum_probs=37.7
Q ss_pred ceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccC-----CCCcceeeeccc
Q psy10923 75 VVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNL-----TCPRCVVQKYIE 121 (520)
Q Consensus 75 ~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~-----~~~~~VvQkYI~ 121 (520)
-.+|+||..++.|+|+.++++.+++....+..... ....++||+||+
T Consensus 138 ~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~ 189 (424)
T 2yw2_A 138 APIVVKADGLAAGKGAVVCETVEKAIETLDRFLNKKIFGKSSERVVIEEFLE 189 (424)
T ss_dssp SSEEEEESSCCTTCSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC
T ss_pred CcEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC
Confidence 36899999999999999999999988776643210 125799999996
No 44
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=96.73 E-value=0.0069 Score=63.05 Aligned_cols=57 Identities=14% Similarity=0.285 Sum_probs=42.8
Q ss_pred ceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccC-----CCCcceeeeccccccccccceeeeeEEEEE
Q psy10923 75 VVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNL-----TCPRCVVQKYIEKPLLIHGVKFDLRVWYVI 139 (520)
Q Consensus 75 ~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~-----~~~~~VvQkYI~~PlLi~GrKFDlRvyVLv 139 (520)
-.+|+||..++.|+|+.++++.+++....+.+... ....++||+||+ |+ ++.+.++.
T Consensus 138 ~P~vvKp~~~~~g~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~------g~--E~sv~~~~ 199 (422)
T 2xcl_A 138 APIVIKADGLAAGKGVTVAMTEEEAIACLHDFLEDEKFGDASASVVIEEYLS------GE--EFSLMAFV 199 (422)
T ss_dssp SSEEEEESSCGGGTCEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC------SE--EEEEEEEE
T ss_pred CCEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCc------Cc--EEEEEEEE
Confidence 36899999999999999999999988776643210 136799999996 43 55555554
No 45
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=96.70 E-value=0.0073 Score=66.43 Aligned_cols=59 Identities=17% Similarity=0.215 Sum_probs=43.7
Q ss_pred ceEEEcCCCCCCCCceEEeCChHHHHHHHhhccc-CCCCcceeeeccccccccccceeeeeEEEEEe
Q psy10923 75 VVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-LTCPRCVVQKYIEKPLLIHGVKFDLRVWYVIT 140 (520)
Q Consensus 75 ~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~-~~~~~~VvQkYI~~PlLi~GrKFDlRvyVLvt 140 (520)
-..|+||..++.|+|+.++++.+++....+.... .....++||+||+.| + ++.+-++..
T Consensus 245 yPvVVKp~~GgGGkGv~iV~s~eEL~~a~~~a~~~~~~~~vlVEeyI~g~-----r--ei~V~vl~D 304 (587)
T 3jrx_A 245 FPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQHA-----R--HLEVQILAD 304 (587)
T ss_dssp SSEEEEETTCCSSSSEEEECSTTTHHHHHHHHHHHSTTCCEEEEECCCSC-----E--EEEEEEEEC
T ss_pred CeEEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHhhccCCCEEEEEecCCC-----c--EEEEEEEEc
Confidence 4689999999999999999999998877654321 124689999999753 2 555555543
No 46
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=96.69 E-value=0.015 Score=61.32 Aligned_cols=58 Identities=14% Similarity=0.286 Sum_probs=39.8
Q ss_pred cce-EEEcCCCCCCCCceEEeCChHHHHHHHhhcccC-----CCCcceeeeccccccccccceeeeeEEEEE
Q psy10923 74 NVV-RVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNL-----TCPRCVVQKYIEKPLLIHGVKFDLRVWYVI 139 (520)
Q Consensus 74 ~~~-WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~-----~~~~~VvQkYI~~PlLi~GrKFDlRvyVLv 139 (520)
+-. +|+||..++.|+|+.++++.+++....+..... ....++||+||+ |+ ++.+.++.
T Consensus 163 g~P~vvvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~------G~--E~sv~~~~ 226 (452)
T 2qk4_A 163 DFPALVVKASGLAAGKGVIVAKSKEEACKAVQEIMQEKAFGAAGETIVIEELLD------GE--EVSCLCFT 226 (452)
T ss_dssp SSCEEEEEESBC---CCEEECSSHHHHHHHHHHHTTC-------CCEEEEECCC------SE--EEEEEEEE
T ss_pred CCCeEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC------CC--eEEEEEEE
Confidence 346 899999999999999999999988876643210 135799999997 33 55665553
No 47
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=96.64 E-value=0.0062 Score=66.27 Aligned_cols=48 Identities=17% Similarity=0.235 Sum_probs=34.4
Q ss_pred ceEEEcCCCCCCCCceEEeCChHHHHHHHhhccc-CCCCcceeeecccc
Q psy10923 75 VVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-LTCPRCVVQKYIEK 122 (520)
Q Consensus 75 ~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~-~~~~~~VvQkYI~~ 122 (520)
-.+|+||..++.|+|+.++++.+++....+.... .....++||+||+.
T Consensus 229 yPvVVKp~~ggGG~Gv~iv~~~~eL~~a~~~~~~~~~~~~vlVEe~I~g 277 (540)
T 3glk_A 229 FPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQH 277 (540)
T ss_dssp SSEEEEETTCC----EEEECSTTTHHHHHHHHHHHSTTCCEEEEECCSS
T ss_pred CcEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhhccCCCEEEEEecCC
Confidence 4689999999999999999999998877664321 12468999999974
No 48
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=96.53 E-value=0.024 Score=61.53 Aligned_cols=48 Identities=19% Similarity=0.223 Sum_probs=38.4
Q ss_pred ceEEEcCCCCCCCCceEEeCChHHHHHHHhhccc-CCCCcceeeecccc
Q psy10923 75 VVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-LTCPRCVVQKYIEK 122 (520)
Q Consensus 75 ~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~-~~~~~~VvQkYI~~ 122 (520)
-.+|+||..++.|+|+.++++.+++....+.... .....++||+||..
T Consensus 235 ~PvVvKp~~g~gg~Gv~~v~~~~el~~a~~~~~~~~~~~~vlvEe~i~g 283 (554)
T 1w96_A 235 FPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIPGSPIFIMKLAGR 283 (554)
T ss_dssp SSEEEEETTCCTTTTEEEECSHHHHHHHHHHHHHHSTTCCEEEEECCCS
T ss_pred CCEEEEECCCCCCceEEEECCHHHHHHHHHHHHhhccCCCEEEEEecCC
Confidence 4689999999999999999999998877654321 12468999999974
No 49
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=96.52 E-value=0.0077 Score=63.43 Aligned_cols=58 Identities=17% Similarity=0.303 Sum_probs=43.2
Q ss_pred cceEEEcCCCCCCCCceEEeCChHHHHHHHhhccc-----CCCCcceeeeccccccccccceeeeeEEEEE
Q psy10923 74 NVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-----LTCPRCVVQKYIEKPLLIHGVKFDLRVWYVI 139 (520)
Q Consensus 74 ~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~-----~~~~~~VvQkYI~~PlLi~GrKFDlRvyVLv 139 (520)
+-.+|+||..++.|+|+.++++.+++....+.+.. .....+|||+||+ |+ ++.+.+++
T Consensus 142 g~PvVvKp~~~~gg~GV~iv~~~~el~~a~~~~~~~~~~g~~~~~vlvEe~i~------G~--E~sv~~~~ 204 (431)
T 3mjf_A 142 GAPIVIKADGLAAGKGVIVAMTQEEAETAVNDMLAGNAFGDAGHRIVVEEFLD------GE--EASFIVMV 204 (431)
T ss_dssp CSSEEEEESSSCTTCSEEEECSHHHHHHHHHHHHTTHHHHCCCCCEEEEECCC------SE--EEEEEEEE
T ss_pred CCeEEEEECCCCCCCcEEEeCCHHHHHHHHHHHHhhccccCCCCeEEEEEeeC------Cc--EEEEEEEE
Confidence 34689999999999999999999998877664321 1135899999997 53 45555553
No 50
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=96.52 E-value=0.024 Score=59.41 Aligned_cols=58 Identities=17% Similarity=0.382 Sum_probs=42.7
Q ss_pred ceEEEcCCCCCCCCceEEeCChHHHHHHHhhccc-----CCCCcceeeeccccccccccceeeeeEEEEE
Q psy10923 75 VVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-----LTCPRCVVQKYIEKPLLIHGVKFDLRVWYVI 139 (520)
Q Consensus 75 ~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~-----~~~~~~VvQkYI~~PlLi~GrKFDlRvyVLv 139 (520)
-.+|+||..++.|+|+.++++.+++....+.... -....++||+||+.+ + ++++-++.
T Consensus 154 ~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~-----~--e~~v~~~~ 216 (449)
T 2w70_A 154 YPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENP-----R--HVEIQVLA 216 (449)
T ss_dssp SSEEEEETTCCTTTTCEEECSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCSSC-----E--EEEEEEEE
T ss_pred CcEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEeccCCC-----e--EEEEEEEE
Confidence 4689999999999999999999988876653211 014589999999742 2 45555554
No 51
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=96.48 E-value=0.012 Score=61.90 Aligned_cols=47 Identities=19% Similarity=0.313 Sum_probs=33.7
Q ss_pred ceEEEcCCCCCCCCceEEeCChHHHHHHHhhccc-----CCCCcceeeeccc
Q psy10923 75 VVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-----LTCPRCVVQKYIE 121 (520)
Q Consensus 75 ~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~-----~~~~~~VvQkYI~ 121 (520)
-.+|+||..++.|+|+.++++.+++....+.+.. .....++||+||+
T Consensus 159 ~PvVvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~ 210 (451)
T 2yrx_A 159 APIVIKADGLAAGKGVTVAQTVEEALAAAKAALVDGQFGTAGSQVVIEEYLE 210 (451)
T ss_dssp SSEEEEECC----CCEEEESSHHHHHHHHHHHHHHSCCBTTBCCEEEEECCC
T ss_pred CcEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhccccCCCCCeEEEEECCc
Confidence 3689999999999999999999998877654311 0136899999997
No 52
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=96.45 E-value=0.0028 Score=67.81 Aligned_cols=135 Identities=13% Similarity=0.127 Sum_probs=76.7
Q ss_pred ceeecCCcccCCccchHHhhHHHHHHHHhhhcccC---CCchhhhhhhhhhhhhcCCcceEEEcCCCCCCCCceEEeC--
Q psy10923 20 AWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLT---CPRCVVQKYIEKPLLIHGVNVVRVLKPVANCSGHGIRIYR-- 94 (520)
Q Consensus 20 ~w~lkP~~~~~Grk~~L~~~l~~~~~~~~~~~~~~---~P~~~~~~~~~~~~~~~~~~~~WI~KP~~~srG~GI~l~~-- 94 (520)
+=|.+|.-.-+-..-.+|.-+.+|.+.+-. +... +|+++..+..+.+... ....-||+||..++.|.|+.+-.
T Consensus 307 V~i~Na~gsgv~~dKal~a~Lp~l~~~~lg-Ee~il~~VpT~~c~~~~~~~~vl-~~l~~lViKp~~g~gg~gv~iG~~~ 384 (474)
T 3n6x_A 307 VTLANAVGTGVADDKDTYIYVPEMIRFYLG-EEPILSNVPTYQLSKADDLKYVL-DNLAELVVKEVQGSGGYGMLVGPAA 384 (474)
T ss_dssp CEEESCTTTHHHHSTTTGGGHHHHHHHHHC-SCCSSEECCCEETTSHHHHHHHH-HSGGGEEEEECCCE-----EEGGGC
T ss_pred EEEeCCCchhhhcCcHHHHHhHHHHHHhCC-HhhhccCCCceecCCHHHHHHHH-hchhheEEEecCCCCCCceEECCcC
Confidence 334444333333444566777787765522 2233 3433322111111112 23347899999999999998854
Q ss_pred ChHHHHHHHhhcccCCCCcceeeecccc---cccccc----ceeeeeEEEEEeeecCceEEEEecceEEeecCC
Q psy10923 95 QLEDIKRAIGTLKNLTCPRCVVQKYIEK---PLLIHG----VKFDLRVWYVITNIDKFKIWVYHEGYVRFCSKP 161 (520)
Q Consensus 95 ~~~~I~~~~~~~~~~~~~~~VvQkYI~~---PlLi~G----rKFDlRvyVLvts~~PL~vY~y~~g~vRfat~~ 161 (520)
+.++...+.+.+.. ....||+|+||.- |.+.+| +++|+|.|++-. -..++...|++|+|..+
T Consensus 385 s~~e~~~~~~~i~~-~p~~yIaQe~v~ls~~P~~~~~~~~~r~~dlR~F~~~g----~~~~v~pGgltRva~~~ 453 (474)
T 3n6x_A 385 SKQELEDFRQRILA-NPANYIAQPTLALSTCPTLVETGIAPRHVDLRPFVLSG----KTVSLVPGALCRVALRE 453 (474)
T ss_dssp CHHHHHHHHHHHHH-SGGGEEEEECCCCCEEEEEETTEEEEEEEEEECEEEES----SSEEECSCCEEEEECST
T ss_pred CHHHHHHHHHHHHh-CCCCEEEeeccCCcccceeeCCceeeeeEEEEEEEEcC----CceEEecceEEEEecCC
Confidence 44455554443321 2346999999974 444444 899999999862 35789999999999865
No 53
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=96.40 E-value=0.015 Score=62.05 Aligned_cols=50 Identities=12% Similarity=0.248 Sum_probs=38.5
Q ss_pred cceEEEcCCCCCCCCceEEeCChHHHHHHHhhccc-----------CCCCcceeeeccccc
Q psy10923 74 NVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-----------LTCPRCVVQKYIEKP 123 (520)
Q Consensus 74 ~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~-----------~~~~~~VvQkYI~~P 123 (520)
+-..|+||..++.|+|+.++++.+++....+.... +-...++||+||..+
T Consensus 174 g~PvVVKP~~g~gg~Gv~iv~~~eel~~a~~~~~~~~~~~~~~~a~~~~~~vlVEe~I~G~ 234 (474)
T 3vmm_A 174 GTPLILKPTYLASSIGVTLITDTETAEDEFNRVNDYLKSINVPKAVTFEAPFIAEEFLQGE 234 (474)
T ss_dssp CSSEEEEESSCCTTTTCEEECCTTSHHHHHHHHHHHHTTSCCCTTCCCSCSEEEEECCCBC
T ss_pred CCCEEEEECCCCcCceEEEECCHHHHHHHHHHHHHHHhhccccccccCCCeEEEEeCCCCc
Confidence 34679999999999999999998888776653211 114689999999854
No 54
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=96.34 E-value=0.022 Score=60.01 Aligned_cols=48 Identities=27% Similarity=0.416 Sum_probs=37.7
Q ss_pred ceEEEcCCCCCCCCceEEeCChHHHHHHHhhccc-----CCCCcceeeecccc
Q psy10923 75 VVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-----LTCPRCVVQKYIEK 122 (520)
Q Consensus 75 ~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~-----~~~~~~VvQkYI~~ 122 (520)
-.+|+||..++.|+|+.++++.+++....+.... -....++||+||+.
T Consensus 158 ~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g 210 (461)
T 2dzd_A 158 YPIIIKAALGGGGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIEN 210 (461)
T ss_dssp SCEEEEESTTCSSSSEEEECCGGGHHHHHHHHHHHHHHHTSCCCEEEEECCCS
T ss_pred CcEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEECCCC
Confidence 4689999999999999999999988776653211 01467999999974
No 55
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=96.14 E-value=0.0056 Score=60.30 Aligned_cols=58 Identities=24% Similarity=0.261 Sum_probs=44.4
Q ss_pred eEEEcCCCCCCCCceEEeC-ChHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEE
Q psy10923 76 VRVLKPVANCSGHGIRIYR-QLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYV 138 (520)
Q Consensus 76 ~WI~KP~~~srG~GI~l~~-~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVL 138 (520)
.+|+||..++.|+|+.+++ +.+++..+.+.+.......++||+||.-+ ..+|+|+.++
T Consensus 156 p~vvKP~~g~~g~Gv~~v~~~~~~l~~~~~~~~~~~~~~~lvqe~i~~~-----~~~~~~v~~~ 214 (316)
T 1gsa_A 156 DIILKPLDGMGGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAI-----KDGDKRVLVV 214 (316)
T ss_dssp SEEEECSSCCTTTTCEEECTTCTTHHHHHHHHTTTTTSCEEEEECCGGG-----GGCEEEEEEE
T ss_pred CEEEEECCCCCcccEEEecCChHHHHHHHHHHHhcCCceEEEecccCCC-----CCCCEEEEEE
Confidence 6899999999999999998 77777665554322123689999999842 3689999875
No 56
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=96.09 E-value=0.044 Score=54.87 Aligned_cols=45 Identities=27% Similarity=0.551 Sum_probs=32.0
Q ss_pred CcceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEEE
Q psy10923 73 VNVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVI 139 (520)
Q Consensus 73 ~~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVLv 139 (520)
.+..+|+||..++.|+|+.++++ . ...++||+||. |+ ++++.++.
T Consensus 132 ~~~P~vvKP~~g~gs~Gv~~v~~------------~--~~~~lvEe~I~------G~--e~sv~v~~ 176 (305)
T 3df7_A 132 LDCKFIIKPRTACAGEGIGFSDE------------V--PDGHIAQEFIE------GI--NLSVSLAV 176 (305)
T ss_dssp CSSSEEEEESSCC----CBCCSS------------C--CTTEEEEECCC------SE--EEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCCEEEEec------------C--CCCEEEEeccC------Cc--EEEEEEEe
Confidence 34569999999999999999987 1 57899999997 54 56666654
No 57
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=95.90 E-value=0.024 Score=64.04 Aligned_cols=57 Identities=26% Similarity=0.441 Sum_probs=44.2
Q ss_pred CcceEEEcCCCCCCCCceEEe----CChHHHHHHHhhcccCCCCcceeeeccccccccccceeeeeEEEE
Q psy10923 73 VNVVRVLKPVANCSGHGIRIY----RQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYV 138 (520)
Q Consensus 73 ~~~~WI~KP~~~srG~GI~l~----~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVL 138 (520)
.+-..|+||..++.|+||.++ .+.+++...++.... ....++||+||. | .|+|+.|+
T Consensus 524 ~g~PvVVKP~~g~~G~GV~iv~~~v~~~eel~~al~~a~~-~~~~vlVEefI~------G--~Ei~v~Vl 584 (757)
T 3ln7_A 524 ENRAVVIKPKSTNYGLGITIFQQGVQNREDFAKALEIAFR-EDKEVMVEDYLV------G--TEYRFFVL 584 (757)
T ss_dssp SSSCEEEEESSCSTTTTCEECSSCCCCHHHHHHHHHHHHH-HCSSEEEEECCC------S--EEEEEEEE
T ss_pred cCCCEEEEeCCCCCCCCeEEecCCCCCHHHHHHHHHHHHh-cCCcEEEEEcCC------C--cEEEEEEE
Confidence 345789999999999999998 788888776653211 146799999994 6 38999876
No 58
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=95.88 E-value=0.023 Score=63.41 Aligned_cols=49 Identities=24% Similarity=0.474 Sum_probs=32.5
Q ss_pred ceEEEcCCCCCCCCceEEeCChHHHHHHHhhccc-----CCCCcceeeeccccc
Q psy10923 75 VVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-----LTCPRCVVQKYIEKP 123 (520)
Q Consensus 75 ~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~-----~~~~~~VvQkYI~~P 123 (520)
-..|+||..++.|+|+.++.+.+++....+.... -....++||+||+.|
T Consensus 179 yPvvvKp~~G~Gg~Gv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEeyI~g~ 232 (675)
T 3u9t_A 179 YPVLLKAAAGGGGKGMKVVEREAELAEALSSAQREAKAAFGDARMLVEKYLLKP 232 (675)
T ss_dssp SSBCCBCCC------CCCBCCTTTHHHHHSCCCC--------CCCBCCBCCSSC
T ss_pred CcEEEEECCCCCCccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEeecCCC
Confidence 4579999999999999999999999887764321 014579999999864
No 59
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=95.36 E-value=0.012 Score=65.67 Aligned_cols=59 Identities=19% Similarity=0.348 Sum_probs=7.5
Q ss_pred cceEEEcCCCCCCCCceEEeCChHHHHHHHhhccc-----CCCCcceeeeccccccccccceeeeeEEEEE
Q psy10923 74 NVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-----LTCPRCVVQKYIEKPLLIHGVKFDLRVWYVI 139 (520)
Q Consensus 74 ~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~-----~~~~~~VvQkYI~~PlLi~GrKFDlRvyVLv 139 (520)
+-..|+||..++.|+|+.++.+.+++....+.... -....++||+||+.| -++.+-++.
T Consensus 152 gyPvVvKp~~ggggkGv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEe~I~g~-------rei~V~v~~ 215 (681)
T 3n6r_A 152 GYPVMIKASAGGGGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQP-------RHIEIQVLC 215 (681)
T ss_dssp ---------------------------------------------------CCSC-------EEEEEEEEC
T ss_pred CCcEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhCCCCcEEEEeccCCC-------cEEEEEEEE
Confidence 44679999999999999999999988776653321 013579999999864 255555554
No 60
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=95.03 E-value=0.089 Score=61.72 Aligned_cols=48 Identities=13% Similarity=0.213 Sum_probs=28.7
Q ss_pred ceEEEcCCCCCCCCceEEeCChHHHHHHHhhccc-CCCCcceeeecccc
Q psy10923 75 VVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-LTCPRCVVQKYIEK 122 (520)
Q Consensus 75 ~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~-~~~~~~VvQkYI~~ 122 (520)
-.+|+||..+..|+|+.++.+.+++..+.+.... ....+++||+||+.
T Consensus 710 ~PvvVKP~~~~gG~Gv~iv~~~~el~~~~~~a~~~~~~~~vlvEefI~g 758 (1073)
T 1a9x_A 710 YPLVVRASYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD 758 (1073)
T ss_dssp SSEEEEC-------CEEEECSHHHHHHHHHHCC--------EEEBCCTT
T ss_pred CCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEccCC
Confidence 4689999999999999999999999988765321 12468999999974
No 61
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=95.01 E-value=0.063 Score=55.38 Aligned_cols=47 Identities=17% Similarity=0.212 Sum_probs=33.7
Q ss_pred ceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCC------CCcceeeeccc
Q psy10923 75 VVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLT------CPRCVVQKYIE 121 (520)
Q Consensus 75 ~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~------~~~~VvQkYI~ 121 (520)
-.-|+||..++.|+|++++++.+++....+.+.... ...+|||+||.
T Consensus 151 ~PvVVK~~~~a~GkGv~v~~s~ee~~~a~~~~~~~~~~~~~~~~~viIEEfl~ 203 (361)
T 2r7k_A 151 GTVIVKFPGARGGRGYFIASSTEEFYKKAEDLKKRGILTDEDIANAHIEEYVV 203 (361)
T ss_dssp SCEEEECSCCCC---EEEESSHHHHHHHHHHHHHTTSCCHHHHHHCEEEECCC
T ss_pred CCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHhccccccCCCCeEEEEeccc
Confidence 467999999999999999999999887664321100 14689999998
No 62
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.00 E-value=0.025 Score=46.78 Aligned_cols=49 Identities=22% Similarity=0.394 Sum_probs=38.1
Q ss_pred ceEEEcCCCCCCCCceEEeCChHHHHHHHhhcc-----cCCCCcceeeeccccc
Q psy10923 75 VVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLK-----NLTCPRCVVQKYIEKP 123 (520)
Q Consensus 75 ~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~-----~~~~~~~VvQkYI~~P 123 (520)
-..|+||..++.|+|+.++++.+++....+.+. ......++||+||.-+
T Consensus 46 ~P~vvKp~~~~~~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvee~i~g~ 99 (108)
T 2cqy_A 46 YPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDRLLIEKFIDNP 99 (108)
T ss_dssp SSEEEEETTSCCTTTCEEESSHHHHHHHHHHHHHHHHHHTSSCCEEEEECCSSS
T ss_pred CCEEEEECCCCCCccEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEeeccCCC
Confidence 367999999999999999999999887665321 0013679999999753
No 63
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=94.90 E-value=0.067 Score=63.22 Aligned_cols=51 Identities=22% Similarity=0.443 Sum_probs=31.5
Q ss_pred CcceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccC-----CCCcceeeeccccc
Q psy10923 73 VNVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNL-----TCPRCVVQKYIEKP 123 (520)
Q Consensus 73 ~~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~-----~~~~~VvQkYI~~P 123 (520)
.+-..|+||..++.|+|+.++++.+++....+..... ....++||+||+.|
T Consensus 154 iGyPvVVKP~~GgGg~Gv~vv~s~eeL~~a~~~a~~~a~~~fg~~~vlVEeyI~G~ 209 (1150)
T 3hbl_A 154 AGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNP 209 (1150)
T ss_dssp TCSSEEEECCC-------CEECCSSSCTHHHHSSSSSCC------CBEEECCCSSC
T ss_pred cCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEccCCC
Confidence 3446899999999999999999998887776643220 14679999999864
No 64
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=94.69 E-value=0.086 Score=61.86 Aligned_cols=48 Identities=10% Similarity=0.126 Sum_probs=38.1
Q ss_pred ceEEEcCCCCCCCCceEEeCChHHHHHHHhhccc-CCCCcceeeecccc
Q psy10923 75 VVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-LTCPRCVVQKYIEK 122 (520)
Q Consensus 75 ~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~-~~~~~~VvQkYI~~ 122 (520)
-.+|+||..+..|+|+.++.+.+++......... +....++||+||.-
T Consensus 164 ~PvVvKp~~~~Gg~Gv~iv~~~eel~~~~~~~~~~~~~~~vlvEe~I~G 212 (1073)
T 1a9x_A 164 FPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIG 212 (1073)
T ss_dssp SSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHHHCTTSCEEEEECCTT
T ss_pred CCEEEEECCCCCCCceEEeCCHHHHHHHHHHHHhhCCCCcEEEEEccCC
Confidence 3689999999999999999999998877653211 12458999999974
No 65
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=94.62 E-value=0.12 Score=61.04 Aligned_cols=59 Identities=17% Similarity=0.229 Sum_probs=9.0
Q ss_pred cceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccC-----CCCcceeeeccccccccccceeeeeEEEEE
Q psy10923 74 NVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNL-----TCPRCVVQKYIEKPLLIHGVKFDLRVWYVI 139 (520)
Q Consensus 74 ~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~-----~~~~~VvQkYI~~PlLi~GrKFDlRvyVLv 139 (520)
+-.+|+||..++.|+|+.++++.+++....+..... ....++||+||+. |+ ++.+-++.
T Consensus 171 gyPvVVKp~~g~GG~Gv~iv~s~eEL~~a~~~~~~~a~~~fg~~~vlVEefI~g-----g~--EisV~vl~ 234 (1165)
T 2qf7_A 171 GYPVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVER-----AR--HVESQILG 234 (1165)
T ss_dssp -------------------------------------------------CCCSS-----EE--EEEEEEEE
T ss_pred CCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEeccC-----Cc--EEEEEEEE
Confidence 446899999999999999999998887765532210 1357899999974 33 45555554
No 66
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=94.11 E-value=0.34 Score=49.70 Aligned_cols=41 Identities=20% Similarity=0.336 Sum_probs=32.3
Q ss_pred cceEEEcCCCC-CCCCceEEeCC--hHHHHHHHhhcccCCCCcceeeeccc
Q psy10923 74 NVVRVLKPVAN-CSGHGIRIYRQ--LEDIKRAIGTLKNLTCPRCVVQKYIE 121 (520)
Q Consensus 74 ~~~WI~KP~~~-srG~GI~l~~~--~~~I~~~~~~~~~~~~~~~VvQkYI~ 121 (520)
+-..|+||..+ +.|+|+.++++ .+++.... . . .++||+||.
T Consensus 114 G~P~VvKp~~~G~~GkGv~~v~~~~~~el~~a~----~--~-~vivEe~I~ 157 (355)
T 3eth_A 114 GELAIVKRRTGGYDGRGQWRLRANETEQLPAEC----Y--G-ECIVEQGIN 157 (355)
T ss_dssp CSEEEEEESSSCCTTTTEEEEETTCGGGSCGGG----T--T-TEEEEECCC
T ss_pred CCCEEEEecCCCCCCCeEEEEcCCCHHHHHHHh----h--C-CEEEEEccC
Confidence 34689999985 89999999999 88876421 1 2 699999997
No 67
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=94.02 E-value=0.028 Score=56.85 Aligned_cols=59 Identities=20% Similarity=0.357 Sum_probs=36.3
Q ss_pred cceEEEcCCCCC-----------CCCce-EEeCChHHHHHHHh-hcccCCCCcceeeeccccccccccceeeeeEEEE
Q psy10923 74 NVVRVLKPVANC-----------SGHGI-RIYRQLEDIKRAIG-TLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYV 138 (520)
Q Consensus 74 ~~~WI~KP~~~s-----------rG~GI-~l~~~~~~I~~~~~-~~~~~~~~~~VvQkYI~~PlLi~GrKFDlRvyVL 138 (520)
....|.||..|+ +|.|. .+++....-..... ...-+....|++|+||.. +| -|||+||+
T Consensus 145 ~kPfVeKPv~Gsdhni~iyyp~s~GgG~~RLfrki~n~sS~~~~~~~vr~~~~~i~QEFI~~----~G--~DIRv~vV 216 (330)
T 3t7a_A 145 QKPFVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSPESNVRKTGSYIYEEFMPT----DG--TDVKVYTV 216 (330)
T ss_dssp ESSEEEEESBTTCCCCEEECCGGGTCCEEEEEEEETTEEEEEESCCSCCSSSCEEEEECCCC----SS--EEEEEEEE
T ss_pred cCCeeEcccccccCcceeecccccCCchhhhhhhhCCcccccChhhhhccCCcEEEEeccCC----CC--ceEEEEEE
Confidence 366899999986 77777 55532110000000 000123778999999985 56 69999997
No 68
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=91.88 E-value=0.19 Score=49.92 Aligned_cols=44 Identities=16% Similarity=0.291 Sum_probs=18.3
Q ss_pred CcceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccc
Q psy10923 73 VNVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIE 121 (520)
Q Consensus 73 ~~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~ 121 (520)
.+-.+|+||..++.|+|+.++++.+++....+. ...++||+||.
T Consensus 148 ~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~-----~~~~lvee~i~ 191 (331)
T 2pn1_A 148 VQLPVFVKPRNGSASIEVRRVETVEEVEQLFSK-----NTDLIVQELLV 191 (331)
T ss_dssp SCSCEEEEESBC----------------------------CEEEEECCC
T ss_pred CCCCEEEEeCCCCCCCCeEEeCCHHHHHHHHHh-----CCCeEEEecCC
Confidence 345799999999999999999998888765532 45899999997
No 69
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=91.00 E-value=0.49 Score=56.26 Aligned_cols=49 Identities=16% Similarity=0.348 Sum_probs=0.5
Q ss_pred cceEEEcCCCCCCCCceEEeCChHHHHHHHhhccc-----CCCCcceeeecccc
Q psy10923 74 NVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-----LTCPRCVVQKYIEK 122 (520)
Q Consensus 74 ~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~-----~~~~~~VvQkYI~~ 122 (520)
+-..|+||..++.|+|+.++.+.+++....+.... .....++||+||+.
T Consensus 180 GyPvVVKP~~GgGGkGV~iv~s~eEL~~a~~~~~~~a~~~~~~~~vlVEeyI~G 233 (1236)
T 3va7_A 180 EYPVMVKSTAGGGGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVNN 233 (1236)
T ss_dssp -----------------------------------------------------C
T ss_pred CCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeeccCC
Confidence 44679999999999999999999988776654221 12457999999984
No 70
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=80.97 E-value=0.88 Score=50.47 Aligned_cols=50 Identities=14% Similarity=0.080 Sum_probs=17.7
Q ss_pred eEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeecccccccccc
Q psy10923 76 VRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHG 128 (520)
Q Consensus 76 ~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~PlLi~G 128 (520)
-||.||..+..|.||.+.....++..... ..-..+.+|+|+|++-|- ++|
T Consensus 544 ~yV~KPi~gReG~nV~I~~~~~~~~~~~~--g~y~~~~~IyQe~~~lp~-f~~ 593 (652)
T 2vob_A 544 GYAKKPIVGRVGSNVIITSGDGVVHAESG--GKYGKRNMIYQQLFELKK-QDD 593 (652)
T ss_dssp CEEEEECC-----------------------------CEEEEECCC--C-BTT
T ss_pred CeEeccCCCCCCCCEEEEcCCchhhhhcc--cccCCCCeEEEecccCCc-cCC
Confidence 49999999999999999875333211111 111257899999998763 444
No 71
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=80.27 E-value=0.47 Score=52.38 Aligned_cols=47 Identities=19% Similarity=0.217 Sum_probs=31.8
Q ss_pred eEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeecccccc
Q psy10923 76 VRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPL 124 (520)
Q Consensus 76 ~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~~Pl 124 (520)
-||.||..|..|.||.+.+...+.. .+....-..+.+|.|+|+..|-
T Consensus 529 ~yV~KPi~gReG~nV~i~~~~~~~~--~~~~~~y~~~~~IyQe~~~lp~ 575 (619)
T 2io8_A 529 GYAVKPIAGRCGSNIDLVSHHEEVL--DKTSGKFAEQKNIYQQLWCLPK 575 (619)
T ss_dssp CEEEEETTCCTTTTCEEECTTSCEE--EECCCTTTTSCEEEEECCCCCE
T ss_pred CEEEccCCCCCCCCEEEEeCCChhH--hhccccccCCCeEEEEecCCCC
Confidence 4999999999999999997521110 0111101246799999998763
No 72
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=76.67 E-value=1.8 Score=43.60 Aligned_cols=40 Identities=28% Similarity=0.429 Sum_probs=29.0
Q ss_pred cceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccc
Q psy10923 74 NVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIE 121 (520)
Q Consensus 74 ~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~ 121 (520)
+-..|+||..++.|+|+.++++.+++.. ....+++|+||.
T Consensus 125 g~P~vvKp~~g~g~~gv~~v~~~~~~~~--------~~~~~~~ee~i~ 164 (363)
T 4ffl_A 125 KPPYFVKPPCESSSVGARIIYDDKDLEG--------LEPDTLVEEYVE 164 (363)
T ss_dssp SSCEEEECSSCCTTTTCEEEC------C--------CCTTCEEEECCC
T ss_pred CCCEEEEECCCCCCcCeEEeccHHHhhh--------hccchhhhhhcc
Confidence 4468999999999999999999887653 256899999985
No 73
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=70.19 E-value=0.45 Score=48.18 Aligned_cols=43 Identities=16% Similarity=0.265 Sum_probs=20.5
Q ss_pred cceEEEcCCCCCCCCceEEeCChHHHHHHHhhcccCCCCcceeeeccc
Q psy10923 74 NVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIE 121 (520)
Q Consensus 74 ~~~WI~KP~~~srG~GI~l~~~~~~I~~~~~~~~~~~~~~~VvQkYI~ 121 (520)
+-.-|+||..++.|+|++++++ +++....+.. ...+|||+||.
T Consensus 125 ~~PviVKp~~g~ggkG~~~v~~-eel~~~~~~~----~~~~IiEEfI~ 167 (320)
T 2pbz_A 125 DELYFVRIEGPRGGSGHFIVEG-SELEERLSTL----EEPYRVERFIP 167 (320)
T ss_dssp SCCEEEECC------------C-EECSCCCC--------CCEEEECCC
T ss_pred CCcEEEEECCCCCCCCEEEECh-HHHHHHHHhc----CCCEEEEeeec
Confidence 4467999999999999999999 8875422111 14799999997
No 74
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=58.38 E-value=5 Score=38.09 Aligned_cols=47 Identities=13% Similarity=0.189 Sum_probs=34.4
Q ss_pred ceEEEcCCCC-----CCCCceEE-eCChHHHHHHHhhccc--------CCCCcceeeeccc
Q psy10923 75 VVRVLKPVAN-----CSGHGIRI-YRQLEDIKRAIGTLKN--------LTCPRCVVQKYIE 121 (520)
Q Consensus 75 ~~WI~KP~~~-----srG~GI~l-~~~~~~I~~~~~~~~~--------~~~~~~VvQkYI~ 121 (520)
-..++||..+ +.|.|+.+ +++.+++....+.+.. .....++||+||.
T Consensus 57 ~PvvvKp~~~~~~~r~~~gGv~~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~vlVEe~i~ 117 (238)
T 1wr2_A 57 YPVVLKLMSPQILHKSDAKVVMLNIKNEEELKKKWEEIHENAKKYRPDAEILGVLVAPMLK 117 (238)
T ss_dssp SSEEEEEECTTCCCHHHHTCEEEEECSHHHHHHHHHHHHHHHHHHCTTCCCCEEEEEECCC
T ss_pred CCEEEEEccCCCCcCCccCCEEEeCCCHHHHHHHHHHHHHhhhhhCCCCccceEEEEECCC
Confidence 3579999998 66778888 7999998876653211 1125799999997
No 75
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=34.16 E-value=52 Score=33.93 Aligned_cols=46 Identities=17% Similarity=0.283 Sum_probs=31.6
Q ss_pred eEEEcCC--CCCCCCc---------eEEeCChHHHHHHHhhcccC------------CCCcceeeeccc
Q psy10923 76 VRVLKPV--ANCSGHG---------IRIYRQLEDIKRAIGTLKNL------------TCPRCVVQKYIE 121 (520)
Q Consensus 76 ~WI~KP~--~~srG~G---------I~l~~~~~~I~~~~~~~~~~------------~~~~~VvQkYI~ 121 (520)
..++||. .+.||+| +.+..+.+++..+.+.+... ....++||+|+.
T Consensus 42 PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s~~e~~~a~~~~l~~~~~t~q~g~~g~~~~~vlVEe~v~ 110 (395)
T 2fp4_B 42 EIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALD 110 (395)
T ss_dssp SEEEEECCSSSCGGGCEETTSCBCSEEEESCHHHHHHHHHTTTTSEEECTTSCTTCEECCCEEEEECCC
T ss_pred cEEEEEeeccCCCccCccccCCcCCEEEECCHHHHHHHHHHHhhcchhhhccCCCCCccceEEEEEccC
Confidence 4699995 4556644 99999999999887643211 023578888885
No 76
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=25.38 E-value=68 Score=33.00 Aligned_cols=47 Identities=13% Similarity=0.288 Sum_probs=33.2
Q ss_pred ceEEEcCCCCCCCC----ceEEeCChHHHHHHHhhcccC-----CCCcceeeeccc
Q psy10923 75 VVRVLKPVANCSGH----GIRIYRQLEDIKRAIGTLKNL-----TCPRCVVQKYIE 121 (520)
Q Consensus 75 ~~WI~KP~~~srG~----GI~l~~~~~~I~~~~~~~~~~-----~~~~~VvQkYI~ 121 (520)
..+++||.....|+ |+.+..+.+++.+..+.+... .....+||+|+.
T Consensus 40 ~PvVvKa~~~~ggkg~~GGV~l~~s~ee~~~a~~~~~~~~~~g~~~~~vlVEe~v~ 95 (397)
T 3ufx_B 40 KRVVIKAQVHVGGRGKAGGVKLADTPQEAYEKAQAILGMNIKGLTVKKVLVAEAVD 95 (397)
T ss_dssp SCEEEEECCSSSCTTTTTCEEEESSHHHHHHHHHHHTTCEETTEECCCEEEEECCC
T ss_pred CCEEEEEccccCCCCccceEEEeCCHHHHHHHHHHhhhhhccCCccceEEEEEeec
Confidence 46899999854443 999999999998877643220 134678888874
No 77
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=25.00 E-value=61 Score=33.23 Aligned_cols=45 Identities=18% Similarity=0.271 Sum_probs=32.0
Q ss_pred EEEcCCCCC--CCC--ceEEeCChHHHHHHHhhcccC------------CCCcceeeeccc
Q psy10923 77 RVLKPVANC--SGH--GIRIYRQLEDIKRAIGTLKNL------------TCPRCVVQKYIE 121 (520)
Q Consensus 77 WI~KP~~~s--rG~--GI~l~~~~~~I~~~~~~~~~~------------~~~~~VvQkYI~ 121 (520)
.++||.... ||. |+.+..+.+++.+..+.+... ....++||+|+.
T Consensus 43 vVvK~~~~~ggrg~~gGV~l~~s~eel~~a~~~~~~~~~~t~q~g~~g~~~~~vlVEe~v~ 103 (388)
T 2nu8_B 43 WVVKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATD 103 (388)
T ss_dssp EEEEECCSSSCTTTTTCEEEECSHHHHHHHHHHHTTSEECCTTSCTTCEECCCEEEEECCC
T ss_pred EEEEEecCCCCCCccCCEEEECCHHHHHHHHHHHhhhhhhccccCCCCcccceEEEEEccc
Confidence 699999863 333 999999999998877643210 124688898886
Done!