RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10923
(520 letters)
>gnl|CDD|217380 pfam03133, TTL, Tubulin-tyrosine ligase family. Tubulins and
microtubules are subjected to several post-translational
modifications of which the reversible
detyrosination/tyrosination of the carboxy-terminal end
of most alpha-tubulins has been extensively analysed.
This modification cycle involves a specific
carboxypeptidase and the activity of the
tubulin-tyrosine ligase (TTL). The true physiological
function of TTL has so far not been established.
Tubulin-tyrosine ligase (TTL) catalyzes the
ATP-dependent post-translational addition of a tyrosine
to the carboxy terminal end of detyrosinated
alpha-tubulin. In normally cycling cells, the
tyrosinated form of tubulin predominates. However, in
breast cancer cells, the detyrosinated form frequently
predominates, with a correlation to tumour
aggressiveness. On the other hand, 3-nitrotyrosine has
been shown to be incorporated, by TTL, into the carboxy
terminal end of detyrosinated alpha-tubulin. This
reaction is not reversible by the carboxypeptidase
enzyme. Cells cultured in 3-nitrotyrosine rich medium
showed evidence of altered microtubule structure and
function, including altered cell morphology, epithelial
barrier dysfunction, and apoptosis. Bacterial homologs
of TTL are predicted to form peptide tags. Some of these
are fused to a 2-oxoglutarate Fe(II)-dependent
dioxygenase domain.
Length = 291
Score = 124 bits (314), Expect = 3e-32
Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 10/153 (6%)
Query: 79 LKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYV 138
+KP A+ G GIRI L I + I + VVQKYIE+PLLI G KFD+R++ +
Sbjct: 71 VKPSASARGRGIRITNDLSQILKQIQS------RPLVVQKYIERPLLIDGRKFDIRLYVL 124
Query: 139 ITNIDKFKIWVYHEGYVRFCSKPYSNI---LLDEARHLTNVRIQKQYRNVRDPPQLPAEL 195
+T+++ +++VY EG +RF S YS L D HLTN IQK+ ++ + P
Sbjct: 125 VTSVNPLRVYVYREGLLRFASVKYSPSVSDLDDVEMHLTNYSIQKKSSSLNEDYNEPNGH 184
Query: 196 MWDFKQLRDYFTKNMNLPRKWDMIMRAMEESIV 228
W Y + + W I + ++I+
Sbjct: 185 KWSLFNFWKY-LEEKDKEEIWLEIESIIIKTIL 216
Score = 57.3 bits (139), Expect = 4e-09
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 237 WYVITNIDKFKIWVYHEGYVRFCSKPYSNI---LLDEARHLTNVRIQKQYRNVRDPPQLP 293
+ ++T+++ +++VY EG +RF S YS L D HLTN IQK+ ++ + P
Sbjct: 122 YVLVTSVNPLRVYVYREGLLRFASVKYSPSVSDLDDVEMHLTNYSIQKKSSSLNEDYNEP 181
>gnl|CDD|106966 PHA00657, PHA00657, crystallin beta/gamma motif-containing protein.
Length = 2052
Score = 34.4 bits (78), Expect = 0.17
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 316 RRMLDIGYTMDMSRRNILNMKVKEAVEKNMIFAILGYYPAVRHKLVNMGWVE-KIDSKR 373
RR L YT +RR+ +V+E + +++ + G Y V + ++ W E ID+ R
Sbjct: 1608 RRQLQGAYTTATTRRSFTKSRVEEVSGRPLLYTLSGLYSGVNDVIHDLAWHEWLIDANR 1666
>gnl|CDD|237914 PRK15122, PRK15122, magnesium-transporting ATPase; Provisional.
Length = 903
Score = 33.5 bits (77), Expect = 0.33
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 19/60 (31%)
Query: 195 LMWDFKQL--------RDYFTKNMNLPRKWDM--IMRAM-----EESIVTIMRCAQMWYV 239
LM+D QL +++ K PRKWD I R M SI I A MW+V
Sbjct: 739 LMYDISQLSLPWDKMDKEFLRK----PRKWDAKNIGRFMLWIGPTSSIFDITTFALMWFV 794
>gnl|CDD|223516 COG0439, AccC, Biotin carboxylase [Lipid metabolism].
Length = 449
Score = 33.0 bits (76), Expect = 0.37
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 22 VLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLT-----CPRCVVQKYIEKPLLIH 71
++K A G G+R+ R E+++ A + PR ++K+IE P I
Sbjct: 156 IVKAAAGGGGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGPRHIE 210
Score = 33.0 bits (76), Expect = 0.37
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 78 VLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLT-----CPRCVVQKYIEKPLLIH 127
++K A G G+R+ R E+++ A + PR ++K+IE P I
Sbjct: 156 IVKAAAGGGGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGPRHIE 210
>gnl|CDD|233254 TIGR01059, gyrB, DNA gyrase, B subunit. This model describes the
common type II DNA topoisomerase (DNA gyrase). Two
apparently independently arising families, one in the
Proteobacteria and one in Gram-positive lineages, are
both designated toposisomerase IV. Proteins scoring
above the noise cutoff for this model and below the
trusted cutoff for topoisomerase IV models probably
should be designated GyrB [DNA metabolism, DNA
replication, recombination, and repair].
Length = 654
Score = 31.6 bits (72), Expect = 1.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 324 TMDMSRRNILNMKVKEAVEKNMIFAIL 350
TMD R +L + +++AVE + IF+ L
Sbjct: 604 TMDPESRTLLKVTIEDAVEADRIFSTL 630
>gnl|CDD|153125 cd02434, Nodulin-21_like_3, Nodulin-21 and CCC1-related protein
family. Nodulin-21_like_3: This is a family of proteins
closely related to nodulin-21, a plant nodule-specific
protein that may be involved in symbiotic nitrogen
fixation. This family is also related to CCC1, a yeast
vacuole transmembrane protein that functions as an iron
and manganese transporter. .
Length = 225
Score = 30.0 bits (68), Expect = 2.2
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 394 YIIKNEKPEQVTSQYYEQKYMSDALAERKPDLLFALRKNYI 434
+ EK E V + Y K +S+ +A++ +LL RK ++
Sbjct: 77 NYPEGEKSEMV--EIYSLKGLSEEVADQVVELLSKYRKLFV 115
>gnl|CDD|180150 PRK05586, PRK05586, biotin carboxylase; Validated.
Length = 447
Score = 30.1 bits (68), Expect = 3.2
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 22 VLKPVANCSGHGIRIYRQLEDIKRAIGTLK-----NLTCPRCVVQKYIEKP 67
++K A G GIRI R E++ +A T K ++K+IE P
Sbjct: 156 MVKASAGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENP 206
Score = 30.1 bits (68), Expect = 3.2
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 78 VLKPVANCSGHGIRIYRQLEDIKRAIGTLK-----NLTCPRCVVQKYIEKP 123
++K A G GIRI R E++ +A T K ++K+IE P
Sbjct: 156 MVKASAGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENP 206
>gnl|CDD|181534 PRK08671, PRK08671, methionine aminopeptidase; Provisional.
Length = 291
Score = 29.4 bits (67), Expect = 4.0
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 23 LKPVANCSGHGIRIYRQ 39
KP+ N +GHG+ Y
Sbjct: 143 FKPIRNLTGHGLERYEL 159
Score = 29.4 bits (67), Expect = 4.0
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 79 LKPVANCSGHGIRIYRQ 95
KP+ N +GHG+ Y
Sbjct: 143 FKPIRNLTGHGLERYEL 159
>gnl|CDD|223267 COG0189, RimK, Glutathione synthase/Ribosomal protein S6
modification enzyme (glutaminyl transferase) [Coenzyme
metabolism / Translation, ribosomal structure and
biogenesis].
Length = 318
Score = 29.3 bits (66), Expect = 5.2
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 22 VLKPVANCSGHGI-RIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKP 67
VLKP+ G G+ + ++ + TL +VQ+YI K
Sbjct: 159 VLKPLDGSGGRGVFLVEDADPELLSLLETLTQEGRKLIIVQEYIPKA 205
Score = 29.3 bits (66), Expect = 5.2
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 78 VLKPVANCSGHGI-RIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKP 123
VLKP+ G G+ + ++ + TL +VQ+YI K
Sbjct: 159 VLKPLDGSGGRGVFLVEDADPELLSLLETLTQEGRKLIIVQEYIPKA 205
>gnl|CDD|216305 pfam01116, F_bP_aldolase, Fructose-bisphosphate aldolase class-II.
Length = 283
Score = 28.6 bits (65), Expect = 8.9
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 22/81 (27%)
Query: 60 VQKYIEKPLLIHGVNVVRVLKPVANCSGHGIRIYRQLEDIKRAI--GTLK-NL-TCPRCV 115
+Q + PL++HG G G+ E+I++AI G K N+ T +
Sbjct: 197 IQAAVPVPLVLHG--------------GSGV----PDEEIRKAIKLGVAKINIDTDLQWA 238
Query: 116 VQKYIEKPLLIHGVKFDLRVW 136
K + + L + +D R +
Sbjct: 239 FTKAVREYLAENPGNYDPRKY 259
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.139 0.438
Gapped
Lambda K H
0.267 0.0635 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 27,263,178
Number of extensions: 2685640
Number of successful extensions: 2724
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2719
Number of HSP's successfully gapped: 22
Length of query: 520
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 419
Effective length of database: 6,457,848
Effective search space: 2705838312
Effective search space used: 2705838312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (27.5 bits)