RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10923
(520 letters)
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB:
3tii_A* 3tin_A*
Length = 380
Score = 121 bits (305), Expect = 2e-30
Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 12/160 (7%)
Query: 79 LKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIH--GVKFDLRVW 136
K + G GI I ++ I V+QKY+E PLL+ KFD+R W
Sbjct: 152 AKSSSGAKGEGILISSDATELLDFIDNQGQ----VHVIQKYLESPLLLEPGHRKFDIRSW 207
Query: 137 YVITNIDKFKIWVYHEGYVRFCSKPYSNI-LLDEARHLTNVRIQKQYRNVRDPPQLPAEL 195
++ N ++ I++Y EG +R S+PYS+ D HLTN IQK++ + +
Sbjct: 208 VLVDN--QYNIYLYREGVLRTSSEPYSDTNFQDMTSHLTNHCIQKEHSK--NYGRYEEGN 263
Query: 196 MWDFKQLRDYFTKNMNLPRKWDMIMRAMEESIVTIMRCAQ 235
F++ Y ++N + I+ ++E I + C +
Sbjct: 264 EMFFEEFNQYLVTSLN-INLENSILCQIKEIIRVCLSCLE 302
Score = 52.3 bits (125), Expect = 2e-07
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 235 QMWYVITNIDKFKIWVYHEGYVRFCSKPYSNI-LLDEARHLTNVRIQKQYRN 285
+ W ++ N ++ I++Y EG +R S+PYS+ D HLTN IQK++
Sbjct: 205 RSWVLVDN--QYNIYLYREGVLRTSSEPYSDTNFQDMTSHLTNHCIQKEHSK 254
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.3 bits (117), Expect = 3e-06
Identities = 62/409 (15%), Positives = 120/409 (29%), Gaps = 142/409 (34%)
Query: 91 RIYRQL-ED-IKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIW 148
+ Y L D IK + TL L R + + + G ++ W + N
Sbjct: 178 QTYHVLVGDLIKFSAETLSELI--RTTLD---AEKVFTQG--LNILEW--LENPSN---- 224
Query: 149 VYHEGYVRFCSKPYS--NILLDEARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRDYF 206
+ Y S P S I + + H + P EL L+
Sbjct: 225 TPDKDY--LLSIPISCPLIGVIQLAHYVVTAKLLGFT--------PGEL---RSYLKGAT 271
Query: 207 TKNMNLPRKWDMIMRAMEESIVT--IMRCAQMW---YVITNIDKFKIWVYHEGYVRFCSK 261
+ + +VT + W + ++ K ++ G
Sbjct: 272 GHS---------------QGLVTAVAIAETDSWESFF--VSVRKAITVLFFIG------- 307
Query: 262 PYSNILLDEARHLTNVRIQKQYRNVRDPPQLPADLGDYNFLNYISEMTDYVRRKRRMLDI 321
VR + Y N PP + D + N + ML I
Sbjct: 308 ---------------VRCYEAYPNTSLPPSILEDSLE----NNEGVPS-------PMLSI 341
Query: 322 GYTMDMSRRNILNMKVKEAVEKNMIFAILGYYPAVRH---KLVNMGWVEKIDSKRTYT-- 376
++++ E V+ + + PA + LVN +
Sbjct: 342 ---SNLTQ---------EQVQD-YVNKTNSHLPAGKQVEISLVN--------GAKNLVVS 380
Query: 377 ---------DFTLRKEFMLTNLDSA--PYIIKNEKPEQVTSQY------YEQKYMSDALA 419
+ TLRK + LD + P+ K + ++++ + + A
Sbjct: 381 GPPQSLYGLNLTLRKAKAPSGLDQSRIPF--SERKLK-FSNRFLPVASPFHSHLLVPASD 437
Query: 420 ERKPDLLFALRKNYITWSALEPDTVVSYFPKCNFCSKLGLNICLESTPV 468
DL+ KN ++++A + V + + G ++ + S +
Sbjct: 438 LINKDLV----KNNVSFNAKDIQIPV-------YDTFDGSDLRVLSGSI 475
Score = 37.3 bits (86), Expect = 0.014
Identities = 38/204 (18%), Positives = 65/204 (31%), Gaps = 64/204 (31%)
Query: 55 CPRCVVQKYIEKPLLIHGVNVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRC 114
+ VQ Y+ K N L + I +L N +
Sbjct: 344 LTQEQVQDYVNK------TN--SHLPA----GKQ-VEI------------SLVN--GAKN 376
Query: 115 -VVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIWVYHE----GYVRF--CSKPYSNILL 167
VV P ++G+ LR + +D+ +I + E RF + P+ + LL
Sbjct: 377 LVVSGP---PQSLYGLNLTLRKAKAPSGLDQSRI-PFSERKLKFSNRFLPVASPFHSHLL 432
Query: 168 DEARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRD--YFTKNMNLPRKWDMIMRAMEE 225
A L N + K + ++ K ++ Y T + + D +R +
Sbjct: 433 VPASDLINKDLVKN------------NVSFNAKDIQIPVYDTFDGS-----D--LRVLSG 473
Query: 226 SIV-----TIMRCAQMWYVITNID 244
SI I+R W T
Sbjct: 474 SISERIVDCIIRLPVKWETTTQFK 497
Score = 34.3 bits (78), Expect = 0.11
Identities = 45/309 (14%), Positives = 85/309 (27%), Gaps = 110/309 (35%)
Query: 191 LPAELMWDFKQLRDYFTKNMNLPRKWDMIMRAMEESIVTIMRCAQMWYVITNIDKFKIWV 250
+P + QL++ F K LP + E +
Sbjct: 22 VPTASFFIASQLQEQFNK--ILPEPTEGFAADDEPTTPA--------------------- 58
Query: 251 YHEGYVRFCSKPYSNILLDEARHLTNVRIQKQYRNVRDPPQLPADLGDY--NFL------ 302
E +F Y + L++ ++ Q+ V L L ++ +L
Sbjct: 59 --ELVGKFLG--YVSSLVEPSK-------VGQFDQV-----LNLCLTEFENCYLEGNDIH 102
Query: 303 ----NYISEMTDYVRRKRRMLDIGYT-MDMSRRNILNM---KVKEAVEKNM--IFAILG- 351
+ E + + + ++ T M++R + AV + + AI G
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG 162
Query: 352 ------YYPAVRHKLVNMGWVEKIDSKRTYTDFTLRKEFMLTNLDSAPYIIKNEKPEQVT 405
Y+ +R L TY + + SA + + +
Sbjct: 163 QGNTDDYFEELR-DLYQ-----------TYHVLV--GDLIKF---SAETLSELIRTTLDA 205
Query: 406 SQYYEQKYMSDALA-----ERKPDLLFALRKNYITWSALEPDTVVSYFPK---------C 451
+ + Q + L PD K+Y+ S P +S P
Sbjct: 206 EKVFTQGL--NILEWLENPSNTPD------KDYLL-SI--P---IS-CPLIGVIQLAHYV 250
Query: 452 NFCSKLGLN 460
LG
Sbjct: 251 VTAKLLGFT 259
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.2 bits (106), Expect = 5e-05
Identities = 71/511 (13%), Positives = 138/511 (27%), Gaps = 187/511 (36%)
Query: 35 RIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHG-------VNVVRVLKPVANCSG 87
R+ + +++A L L K + LI G + V
Sbjct: 133 RL-QPYLKLRQA---LLELR-----PAKNV----LIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 88 HGIRIY----RQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNID 143
+I+ + + + L+ L + + + + H LR+ + +
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKL-LYQ-IDPNWTSRSD--HSSNIKLRIHSIQAELR 235
Query: 144 KFKIWVYHEGYVRFCSKPYSNIL--LDEARH---------------------LTNVRIQK 180
+ SKPY N L L ++ +T+
Sbjct: 236 RL-----------LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284
Query: 181 QYRNVR-----------------------DPPQLPAEL--------------------MW 197
++ P LP E+ W
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 198 D-FKQ---------------------LRDYFT------KNMNLPRK-----WDMIMRAME 224
D +K R F + ++P W ++++
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 225 ESIVTIMRCAQMWYVITNIDKFKIWVYHEGYVRFCSKPYSNILLDEARHLTNVRIQKQYR 284
+V + + V + I Y+ K + L + + I K +
Sbjct: 405 MVVVNKLHKYSL--VEKQPKESTI-SIPSIYLELKVKLENEYAL-HRSIVDHYNIPKTFD 460
Query: 285 NVRDPPQLPADLGDYNFLNYISEMTDYVRRKRRMLDIGYTMDMSRRNILNMKVKEAVEKN 344
+ D D Y F ++ IG+ ++K E E+
Sbjct: 461 S-DDLIPPYLD--QY-FYSH----------------IGH----------HLKNIEHPERM 490
Query: 345 MIFAILGYYPAVRHKLVNMGWVE-KIDSKRTYTDFTLRKEFMLTNLDS-APYIIKNE-KP 401
+F R ++ ++E KI T + + L L PYI N+ K
Sbjct: 491 TLF---------RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541
Query: 402 EQVTSQYYE--QKYMSDALAERKPDLL-FAL 429
E++ + + K + + + DLL AL
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYTDLLRIAL 572
Score = 44.8 bits (105), Expect = 6e-05
Identities = 46/340 (13%), Positives = 95/340 (27%), Gaps = 109/340 (32%)
Query: 1 MEH--PPLTLKNILDTGLLSCAWV----LKPVANCSGH----GIRIYRQLEDIKRAIGTL 50
++H LT + LL L + + I I + D
Sbjct: 291 LDHHSMTLTPDEVKSL-LLKYLDCRPQDLPREV-LTTNPRRLSI-IAESIRDGLATWDNW 347
Query: 51 KNLTCPRCVVQKYIEKPLLIHGVNVVRVLKPVANCSGHGIR-IYRQL----EDIKRAIGT 105
K++ C + + IE L VL+P R ++ +L
Sbjct: 348 KHVNCDK--LTTIIESSL--------NVLEP------AEYRKMFDRLSVFPPSAHIPTIL 391
Query: 106 LKNL------TCPRCVVQKYIEKPLL----------IHGVKFDLRVWYVITNIDKFKIWV 149
L + + VV K + L+ I + +L+ + +++ +
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK----VKLENEYAL-- 445
Query: 150 YH----EGY---VRFCSKPYSNILLDE------ARHLTNVR-----------------IQ 179
H + Y F S LD+ HL N+ ++
Sbjct: 446 -HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504
Query: 180 KQYRNVRDPPQLPAELMWDFKQLR---DYFTKNMNLPRKWDMIMRAMEESIVT-IMRCAQ 235
++ R+ ++ +QL+ Y N D + +I+ + +
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDN-------DPKYERLVNAILDFLPKIE- 556
Query: 236 MWYVITNIDKFKIWVYHEGYVRFC-SKPYSNILLDEARHL 274
N+ K + +R I + + +
Sbjct: 557 -----ENLICSK----YTDLLRIALMAEDEAIFEEAHKQV 587
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.64
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 14/34 (41%)
Query: 366 VEKIDSK-RTYTDFTLRKEFMLTNLDSAPYI-IK 397
++K+ + + Y D DSAP + IK
Sbjct: 22 LKKLQASLKLYAD------------DSAPALAIK 43
>2ewl_A Protein E7; HPV, oncoprotein, zinc binding, virus-viral protein
COMP; NMR {Human papillomavirus} SCOP: g.91.1.1 PDB:
2f8b_A
Length = 56
Score = 28.3 bits (63), Expect = 0.80
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 6/45 (13%)
Query: 18 SCAWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQK 62
C ++ S +R +QL + TL + CP C +
Sbjct: 18 KCDGRIELTVESSAEDLRTLQQL-----FLSTL-SFVCPWCATNQ 56
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia
coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Length = 316
Score = 30.3 bits (69), Expect = 1.4
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 21 WVLKPVANCSGHGI-RIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEK 66
+LKP+ G I R+ ++ TL C+ Q Y+
Sbjct: 157 IILKPLDGMGGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPA 203
Score = 29.5 bits (67), Expect = 2.4
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 78 VLKPVANCSGHGI-RIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEK 122
+LKP+ G I R+ ++ TL C+ Q Y+
Sbjct: 158 ILKPLDGMGGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPA 203
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide
transferase; purine ribonucleotide biosynthesis; HET:
ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Length = 433
Score = 30.3 bits (69), Expect = 1.5
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 22 VLKPVANCSGHGIRIYRQLEDIKRAIGTLKN---LTCPRCVVQKYIE 65
K + + SG G + EDI +A K + + +V+++I+
Sbjct: 160 HTKAIMSSSGKGSYFVKGPEDIPKAWEEAKTKARGSAEKIIVEEHID 206
Score = 30.3 bits (69), Expect = 1.5
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 78 VLKPVANCSGHGIRIYRQLEDIKRAIGTLKN---LTCPRCVVQKYIE 121
K + + SG G + EDI +A K + + +V+++I+
Sbjct: 160 HTKAIMSSSGKGSYFVKGPEDIPKAWEEAKTKARGSAEKIIVEEHID 206
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
ligase; 2.61A {Anaerococcus prevotii}
Length = 403
Score = 30.4 bits (69), Expect = 1.5
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 22 VLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLT-CPRCVVQKYIEKP 67
++K GI I ++ E+ NLT C+V+++IE
Sbjct: 148 IVKATDLQGSKGIYIAKKEEEAIDGFNETMNLTKRDYCIVEEFIEGY 194
Score = 30.4 bits (69), Expect = 1.5
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 78 VLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLT-CPRCVVQKYIEKP 123
++K GI I ++ E+ NLT C+V+++IE
Sbjct: 148 IVKATDLQGSKGIYIAKKEEEAIDGFNETMNLTKRDYCIVEEFIEGY 194
>3q4o_A Uncharacterized protein MJ0754; ferritin-like protein, four-helix
bundle, metal binding, DIN center, unknown function;
HET: B3P; 1.34A {Methanocaldococcus jannaschii} PDB:
3q4q_A* 3q4r_A* 3q4n_A
Length = 196
Score = 29.6 bits (66), Expect = 1.8
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 250 VYHEGYVRFCSKPYSNILLDEARHLTNVRIQKQYRNVRDPPQLPADLGDYN 300
VY Y ++ + + NI E H+ V+ + N+ DP + +G ++
Sbjct: 45 VYLTLYNKWKLQIFKNIAESEQTHMDAVKYLLEKYNIPDPVK-NDSIGVFS 94
Score = 29.6 bits (66), Expect = 1.8
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 149 VYHEGYVRFCSKPYSNILLDEARHLTNVRIQKQYRNVRDP 188
VY Y ++ + + NI E H+ V+ + N+ DP
Sbjct: 45 VYLTLYNKWKLQIFKNIAESEQTHMDAVKYLLEKYNIPDP 84
>1xgs_A Methionine aminopeptidase; hyperthermophIle; 1.75A {Pyrococcus
furiosus} SCOP: a.4.5.25 d.127.1.1 PDB: 1xgm_A 1xgn_A
1xgo_A 1wkm_A 2dfi_A
Length = 295
Score = 29.5 bits (67), Expect = 2.6
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 10/36 (27%)
Query: 59 VVQKYIEKPLLIHGVNVVRVLKPVANCSGHGIRIYR 94
++ I K G + N SGH I Y+
Sbjct: 134 AIENEIRK----RGFKPIV------NLSGHKIERYK 159
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid
ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus
subtilis}
Length = 474
Score = 29.5 bits (66), Expect = 2.9
Identities = 6/58 (10%), Positives = 18/58 (31%), Gaps = 11/58 (18%)
Query: 21 WVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTC-----------PRCVVQKYIEKP 67
+LKP S G+ + E + + + + +++++
Sbjct: 177 LILKPTYLASSIGVTLITDTETAEDEFNRVNDYLKSINVPKAVTFEAPFIAEEFLQGE 234
Score = 29.5 bits (66), Expect = 3.0
Identities = 6/57 (10%), Positives = 18/57 (31%), Gaps = 11/57 (19%)
Query: 78 VLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTC-----------PRCVVQKYIEKP 123
+LKP S G+ + E + + + + +++++
Sbjct: 178 ILKPTYLASSIGVTLITDTETAEDEFNRVNDYLKSINVPKAVTFEAPFIAEEFLQGE 234
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-;
ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP
MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1
d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A*
1ez1_A*
Length = 391
Score = 29.4 bits (67), Expect = 3.2
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 22 VLKPVANCSGHGIRIYRQLEDIKRAIGTLKN---LTCPRCVVQKYIE 65
++KPV + SG G R E + +A + R +V+ ++
Sbjct: 152 IVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVK 198
Score = 29.4 bits (67), Expect = 3.2
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 78 VLKPVANCSGHGIRIYRQLEDIKRAIGTLKN---LTCPRCVVQKYIE 121
++KPV + SG G R E + +A + R +V+ ++
Sbjct: 152 IVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVK 198
>3nuh_B DNA gyrase subunit B; topoisomerase, supercoiling, specialization,
isomera; HET: DNA; 3.10A {Escherichia coli}
Length = 420
Score = 29.1 bits (65), Expect = 3.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 324 TMDMSRRNILNMKVKEAVEKNMIFAIL 350
TMD R +L + VK+A+ + +F L
Sbjct: 370 TMDPESRRMLRVTVKDAIAADQLFTTL 396
>1x9y_A Cysteine proteinase; half-barrel, barrel-sandwich-hybrid,
hydrolase; 2.50A {Staphylococcus aureus} SCOP: d.3.1.1
d.17.1.4
Length = 367
Score = 29.2 bits (64), Expect = 3.6
Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 13/101 (12%)
Query: 305 ISEMTDYVRRKRRMLDIGYTMDMSRRNILNMKVKEAVEKNMIFAILGY-------YPAVR 357
++M +Y + + R DI Y + N +V + + N+ IL P +
Sbjct: 252 PNQMIEYGKSQGR--DIHYQEGVPSYN----QVDQLTKDNVGIMILAQSVSQNPNDPHLG 305
Query: 358 HKLVNMGWVEKIDSKRTYTDFTLRKEFMLTNLDSAPYIIKN 398
H L +G + D ++ E + + DS+ +
Sbjct: 306 HALAVVGNAKINDQEKLIYWNPWDTELSIQDADSSLLHLSF 346
>3n0k_A Serine protease inhibitor 1; proteinase inhibitor, hydrolase
inhibitor; 1.80A {Coprinopsis cinerea}
Length = 150
Score = 28.3 bits (62), Expect = 3.7
Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 16/68 (23%)
Query: 137 YVITNIDKFKIWVYHEGYVRFCSKPYSNILLDEARHLTNVRIQKQYRNVRDPPQLPAELM 196
+ + N WV + +A L V ++ PP+ PA +
Sbjct: 98 FTVVNASTEHGWV----------------VPADAEELQQVEVRPLIAAPSYPPRYPATEL 141
Query: 197 WDFKQLRD 204
+ F Q+
Sbjct: 142 FTFTQVES 149
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural
genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Length = 458
Score = 29.0 bits (65), Expect = 4.0
Identities = 9/63 (14%), Positives = 20/63 (31%), Gaps = 12/63 (19%)
Query: 261 KPYSNILLDE-----------ARHLTNVRIQKQYRNVRDPPQLPADLGDYNFLNYISEMT 309
KP +N L+++ AR + + + + N ++T
Sbjct: 183 KP-ANCLVNQDCSVKVCDFGLARTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLT 241
Query: 310 DYV 312
+V
Sbjct: 242 GHV 244
>3zx4_A MPGP, mannosyl-3-phosphoglycerate phosphatase; hydrolase,
haloalkanoid acid dehalogenase-like phosphatase,
crystallographic snapshot; HET: 2M8; 1.74A {Thermus
thermophilus} PDB: 3zty_A 3zu6_A* 3ztw_A* 3zw7_A*
3zwd_A* 3zwk_A 3zup_A* 3zx5_A*
Length = 259
Score = 28.8 bits (64), Expect = 4.6
Identities = 7/49 (14%), Positives = 19/49 (38%)
Query: 197 WDFKQLRDYFTKNMNLPRKWDMIMRAMEESIVTIMRCAQMWYVITNIDK 245
+ R+Y + P + + ++ A+E + + ++ DK
Sbjct: 129 ARRAKAREYDETLVLCPEEVEAVLEALEAVGLEWTHGGRFYHAAKGADK 177
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II,
nysgrc., structural genomics, protein structure
initiative; 1.87A {Archaeoglobus fulgidus}
Length = 305
Score = 28.5 bits (63), Expect = 5.1
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 14/45 (31%)
Query: 21 WVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIE 65
+++KP C+G GI ++ D + Q++IE
Sbjct: 136 FIIKPRTACAGEGIGFSDEVPD--------------GHIAQEFIE 166
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A
{Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Length = 1193
Score = 28.9 bits (63), Expect = 5.7
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 288 DPPQLPADLGDYNFLNYISEMTDYVRRKRR 317
D P+ +L +FL IS ++ R + R
Sbjct: 1109 DKPRRGIELSKLSFLRLISNESEQDRVEFR 1138
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp
domain, carbamoylphosphate synthase subunit (split gene
in MJ); 2.00A {Exiguobacterium sibiricum}
Length = 331
Score = 28.3 bits (63), Expect = 5.8
Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Query: 11 ILDTGLLSCAWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKP 67
L G + +KP + +R +E++++ +L +VQ+ +
Sbjct: 142 ALAAGEVQLPVFVKPRNGSASIEVRRVETVEEVEQLFSKNTDL-----IVQELLVGQ 193
Score = 27.9 bits (62), Expect = 9.0
Identities = 11/73 (15%), Positives = 26/73 (35%), Gaps = 6/73 (8%)
Query: 52 NLTCPRCV-VQKYIEKPLLIHGVNVVRVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLT 110
+ R E+ L V + +KP + +R +E++++ +L
Sbjct: 126 GIAHARTYATMASFEEALAAGEVQLPVFVKPRNGSASIEVRRVETVEEVEQLFSKNTDL- 184
Query: 111 CPRCVVQKYIEKP 123
+VQ+ +
Sbjct: 185 ----IVQELLVGQ 193
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase,
hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP:
c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A*
2iob_A 3o98_A*
Length = 619
Score = 28.5 bits (63), Expect = 6.0
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 13 DTGLLSCAWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKP 67
+ L+ + +KP+A G I + E++ T + + Q+ P
Sbjct: 522 NDELVKTGYAVKPIAGRCGSNIDLVSHHEEVLDK--TSGKFAEQKNIYQQLWCLP 574
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural
genomics consorti ER-golgi transport, golgi apparatus,
GTPase activation; 2.40A {Homo sapiens}
Length = 147
Score = 27.5 bits (61), Expect = 6.9
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 382 KEFMLTNLDSAPYIIKNEKPEQVTSQYYEQKYMSDALAERKP 423
+EF+ + D P EK + + K ALAE +
Sbjct: 103 REFLESQEDYDPCWSLQEKYNSRAAALFRDKV--VALAEGRE 142
>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic
reticulum, glycoprotein, redox-active center; 1.92A
{Rattus norvegicus}
Length = 250
Score = 28.2 bits (62), Expect = 6.9
Identities = 18/125 (14%), Positives = 39/125 (31%), Gaps = 17/125 (13%)
Query: 375 YTDFTLRKEFMLTNLDSAPYIIKNEKPEQVTSQYYEQKYMSDALAERKPDLLFALRKNYI 434
K + L Y + + +Q++ K + +A+ P+ FA+
Sbjct: 121 RKTSNDAKRYSKRPLVVVYYSVDFSFDYRTATQFWRNKVLE--VAKDFPEYTFAIADEED 178
Query: 435 TWSALEPDTVVSYFPKCNFCSKLGLNICLESTPVFKNDSDSLKYPRGFNMSNEISMRRFV 494
+ ++ LGL+ D K+ + ++R FV
Sbjct: 179 YATEVK---------------DLGLSESGGDVNAAILDESGKKFAMEPEEFDSDALREFV 223
Query: 495 QNFRE 499
F++
Sbjct: 224 MAFKK 228
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1,
inositol 1,3,4-5/6 phosphate, inositol phosphate,
inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB:
2qb5_A* 2odt_X
Length = 346
Score = 27.8 bits (61), Expect = 9.5
Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 10/77 (12%)
Query: 2 EHPPLTLKNILDTGLLSCAWVLKPVANC--SGHGIRIYRQLEDIKRAIGTLKNLTCPRCV 59
+L+ L+ ++ K + H + I E L + P CV
Sbjct: 146 SLCGDDTMRLLEKNGLTFPFICKTRVAHGTNSHEMAIVFNQEG-------LNAIQ-PPCV 197
Query: 60 VQKYIEKPLLIHGVNVV 76
VQ +I +++ V VV
Sbjct: 198 VQNFINHNAVLYKVFVV 214
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.139 0.438
Gapped
Lambda K H
0.267 0.0720 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,379,602
Number of extensions: 513997
Number of successful extensions: 1324
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1303
Number of HSP's successfully gapped: 43
Length of query: 520
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 422
Effective length of database: 3,965,535
Effective search space: 1673455770
Effective search space used: 1673455770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (26.5 bits)