RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10923
         (520 letters)



>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide
           ribonucleotide synthetase PurP {Methanocaldococcus
           jannaschii [TaxId: 2190]}
          Length = 238

 Score = 29.3 bits (65), Expect = 0.80
 Identities = 13/89 (14%), Positives = 25/89 (28%), Gaps = 6/89 (6%)

Query: 78  VLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLT------CPRCVVQKYIEKPLLIHGVKF 131
           ++K      G G  I    E+  +    LK              +++Y+          +
Sbjct: 31  IVKFPGARGGRGYFIASSTEEFYKKAEDLKKRGILTDEDIANAHIEEYVVGTNFCIHYFY 90

Query: 132 DLRVWYVITNIDKFKIWVYHEGYVRFCSK 160
                 V       +     +G VR  +K
Sbjct: 91  SPLKDEVELLGMDKRYESNIDGLVRIPAK 119


>d2b9da1 g.91.1.1 (A:42-93) E7 oncoprotein {Human papillomavirus
          type 1a [TaxId: 10583]}
          Length = 52

 Score = 26.6 bits (59), Expect = 1.1
 Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 6/44 (13%)

Query: 19 CAWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQK 62
          C  +++         IR   ++      + +L N+ CP C +Q+
Sbjct: 14 CEKLVRLTVLADHSAIRQLEEM-----LLRSL-NIVCPLCTLQR 51


>d2ewla1 g.91.1.1 (A:5-56) E7 oncoprotein {Human papillomavirus
          type 45 [TaxId: 10593]}
          Length = 52

 Score = 26.2 bits (58), Expect = 1.6
 Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 6/40 (15%)

Query: 19 CAWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRC 58
          C   ++     S   +R  +QL      + TL +  CP C
Sbjct: 15 CDGRIELTVESSAEDLRTLQQL-----FLSTL-SFVCPWC 48



 Score = 25.4 bits (56), Expect = 2.9
 Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 6/38 (15%)

Query: 77  RVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRC 114
             ++     S   +R  +QL      + TL +  CP C
Sbjct: 17  GRIELTVESSAEDLRTLQQL-----FLSTL-SFVCPWC 48


>d1ekxa1 c.78.1.1 (A:1-150) Aspartate carbamoyltransferase catalytic
           subunit {Escherichia coli [TaxId: 562]}
          Length = 150

 Score = 26.6 bits (58), Expect = 4.1
 Identities = 5/66 (7%), Positives = 16/66 (24%)

Query: 210 MNLPRKWDMIMRAMEESIVTIMRCAQMWYVITNIDKFKIWVYHEGYVRFCSKPYSNILLD 269
           +      +  +    E++   +     +     +   +            + P  N    
Sbjct: 71  VGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDG 130

Query: 270 EARHLT 275
             +H T
Sbjct: 131 SNQHPT 136


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.139    0.438 

Gapped
Lambda     K      H
   0.267   0.0376    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,122,474
Number of extensions: 106876
Number of successful extensions: 318
Number of sequences better than 10.0: 1
Number of HSP's gapped: 318
Number of HSP's successfully gapped: 14
Length of query: 520
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 431
Effective length of database: 1,185,626
Effective search space: 511004806
Effective search space used: 511004806
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.9 bits)