BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10924
         (322 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4I4T|F Chain F, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
 pdb|4I50|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
           Complex
 pdb|4I55|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl Complex
 pdb|4IIJ|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
 pdb|4IHJ|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
          Length = 384

 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 120/243 (49%), Gaps = 25/243 (10%)

Query: 29  NVWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGV--KFD 86
           NVW+ K  A   G GI I  +  ++   I     +     V+QKY+EKPLL+     KFD
Sbjct: 145 NVWIAKSSAGAKGEGILISSEASELLDFIDEQGQVH----VIQKYLEKPLLLEPGHRKFD 200

Query: 87  LRVWYVITNIDKFKIWVYHEGYVRFCSKPYSNI-LLDEARHLTNVRIQKQYRNVRDPPQL 145
           +R W ++ ++  + I++Y EG +R  S+PY++    D+  HLTN  IQK+Y       + 
Sbjct: 201 IRSWVLVDHL--YNIYLYREGVLRTSSEPYNSANFQDKTCHLTNHCIQKEYSKNYGRYEE 258

Query: 146 PAELMWDFKQLRDYFTKNMNLPRKWDMIMKAMEESIVTIMRCAQ-SINYIDLRKNSFQLF 204
             E+   F++   Y    +N   + + I+  ++  I + + C + +I+   L   SFQLF
Sbjct: 259 GNEMF--FEEFNQYLMDALNTTLE-NSILLQIKHIIRSCLMCIEPAISTKHLHYQSFQLF 315

Query: 205 GADFLIHENYQPCLIEVNNGPGLSPTTSIIAKKTTELLTDMVKVVTAERNPLSSFQNSVD 264
           G DF++ E  +  LIEVN  P  +       K   EL   +V V  +   PL+      D
Sbjct: 316 GFDFMVDEELKVWLIEVNGAPACA------QKLYAELCQGIVDVAISSVFPLA------D 363

Query: 265 TGK 267
           TG+
Sbjct: 364 TGQ 366


>pdb|3TIG|A Chain A, Tubulin Tyrosine Ligase
 pdb|3TII|A Chain A, Tubulin Tyrosine Ligase
 pdb|3TII|B Chain B, Tubulin Tyrosine Ligase
 pdb|3TIN|A Chain A, Tubulin Tyrosine Ligase
          Length = 380

 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 122/242 (50%), Gaps = 21/242 (8%)

Query: 20  KQEMYDGTHNVWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLL 79
           K+E  +G  NVW+ K  +   G GI I     ++   I     +     V+QKY+E PLL
Sbjct: 141 KKENEEG--NVWIAKSSSGAKGEGILISSDATELLDFIDNQGQVH----VIQKYLESPLL 194

Query: 80  IHGV--KFDLRVWYVITNIDKFKIWVYHEGYVRFCSKPYSNI-LLDEARHLTNVRIQKQY 136
           +     KFD+R W ++ N  ++ I++Y EG +R  S+PYS+    D   HLTN  IQK++
Sbjct: 195 LEPGHRKFDIRSWVLVDN--QYNIYLYREGVLRTSSEPYSDTNFQDMTSHLTNHCIQKEH 252

Query: 137 RNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIMKAMEESIVTIMRCAQ-SINYID 195
                  +   E+   F++   Y   ++N+  + + I+  ++E I   + C + +I+   
Sbjct: 253 SKNYGRYEEGNEMF--FEEFNQYLVTSLNINLE-NSILCQIKEIIRVCLSCLEPAISTKY 309

Query: 196 LRKNSFQLFGADFLIHENYQPCLIEVNNGPGLSPTTSIIAKKTTELLTDMVKVVTAERNP 255
           L  +SFQLFG DF++ +N +  LIEVN  P  +       K   EL   +V +  +   P
Sbjct: 310 LPYHSFQLFGFDFMVDKNLKVWLIEVNGAPACA------QKLYAELCKGIVDLAISSVFP 363

Query: 256 LS 257
           L+
Sbjct: 364 LN 365


>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
           Lactobacillus Plantarum
          Length = 324

 Score = 28.9 bits (63), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 191 INYIDLRKNSFQLFGADFLIHENYQPCLIEVNNGPGLSPTTSIIAKKTTELLTDMVKVVT 250
           +N + L   +  LF  +       QP LI +  GP +  T  + A    +L   M  +  
Sbjct: 196 VNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQL--SMAALDV 253

Query: 251 AERNPLSS 258
            E  PL +
Sbjct: 254 TEPEPLPT 261


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.135    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,588,954
Number of Sequences: 62578
Number of extensions: 379592
Number of successful extensions: 712
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 701
Number of HSP's gapped (non-prelim): 15
length of query: 322
length of database: 14,973,337
effective HSP length: 99
effective length of query: 223
effective length of database: 8,778,115
effective search space: 1957519645
effective search space used: 1957519645
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)