Query psy10924
Match_columns 322
No_of_seqs 192 out of 1256
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 21:58:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10924.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10924hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03133 TTL: Tubulin-tyrosine 100.0 1.4E-55 3.1E-60 412.5 15.5 244 4-254 42-289 (292)
2 KOG2157|consensus 100.0 1.3E-51 2.9E-56 402.9 17.8 265 3-275 174-446 (497)
3 KOG2156|consensus 100.0 1.2E-45 2.6E-50 352.7 11.7 214 28-254 305-529 (662)
4 KOG2158|consensus 100.0 2.3E-31 4.9E-36 252.0 6.8 207 29-249 227-448 (565)
5 KOG2155|consensus 99.9 8.7E-26 1.9E-30 212.9 9.5 215 12-249 396-618 (631)
6 PF14398 ATPgrasp_YheCD: YheC/ 99.9 2.5E-21 5.4E-26 178.7 22.2 163 29-233 56-241 (262)
7 PF08443 RimK: RimK-like ATP-g 99.3 4.9E-11 1.1E-15 105.0 13.0 134 31-232 42-176 (190)
8 COG0189 RimK Glutathione synth 99.1 9.3E-10 2E-14 104.3 13.2 137 29-229 156-293 (318)
9 TIGR00768 rimK_fam alpha-L-glu 99.1 7.6E-10 1.6E-14 102.0 11.7 57 30-92 125-184 (277)
10 PF07478 Dala_Dala_lig_C: D-al 99.1 4.3E-09 9.3E-14 93.7 15.5 150 30-234 35-184 (203)
11 PRK10446 ribosomal protein S6 99.1 7.6E-10 1.6E-14 104.1 11.1 57 30-92 137-193 (300)
12 PRK14568 vanB D-alanine--D-lac 99.1 4.8E-09 1E-13 100.6 15.8 152 29-232 166-317 (343)
13 PRK01966 ddl D-alanyl-alanine 99.0 8.3E-09 1.8E-13 98.6 16.6 145 30-232 164-308 (333)
14 PRK14571 D-alanyl-alanine synt 99.0 1E-08 2.2E-13 96.3 16.9 164 29-249 126-295 (299)
15 TIGR02144 LysX_arch Lysine bio 99.0 2E-09 4.3E-14 99.8 11.5 57 30-92 124-183 (280)
16 PRK01372 ddl D-alanine--D-alan 99.0 1.7E-08 3.7E-13 94.7 17.3 54 30-92 135-188 (304)
17 TIGR01205 D_ala_D_alaTIGR D-al 99.0 1.9E-08 4.1E-13 94.8 16.3 145 29-232 147-292 (315)
18 PRK14569 D-alanyl-alanine synt 99.0 2.5E-08 5.5E-13 93.7 16.1 142 29-232 131-272 (296)
19 PRK14570 D-alanyl-alanine synt 99.0 3.3E-08 7.1E-13 95.6 17.1 170 30-252 173-349 (364)
20 PLN02941 inositol-tetrakisphos 98.9 1.7E-08 3.6E-13 95.9 12.7 151 26-232 150-311 (328)
21 TIGR02291 rimK_rel_E_lig alpha 98.9 1.6E-08 3.6E-13 95.4 12.4 27 202-228 247-273 (317)
22 PF13535 ATP-grasp_4: ATP-gras 98.8 6.3E-08 1.4E-12 83.4 13.4 58 29-92 40-100 (184)
23 PRK14572 D-alanyl-alanine synt 98.8 1.4E-07 3.1E-12 90.6 17.1 55 30-93 173-227 (347)
24 PF14397 ATPgrasp_ST: Sugar-tr 98.8 1.4E-07 3.1E-12 88.2 14.5 167 29-230 74-265 (285)
25 PF02655 ATP-grasp_3: ATP-gras 98.8 1.5E-08 3.3E-13 86.8 6.9 55 24-93 27-81 (161)
26 PRK05246 glutathione synthetas 98.7 1.2E-07 2.7E-12 89.9 10.9 69 30-114 156-229 (316)
27 PLN02257 phosphoribosylamine-- 98.7 7.5E-07 1.6E-11 88.1 15.9 169 30-249 139-314 (434)
28 TIGR01161 purK phosphoribosyla 98.6 2.7E-06 5.9E-11 81.7 17.0 43 30-75 135-178 (352)
29 TIGR03103 trio_acet_GNAT GNAT- 98.6 1.6E-06 3.4E-11 88.2 15.5 54 31-93 334-388 (547)
30 PRK13789 phosphoribosylamine-- 98.5 1.2E-06 2.6E-11 86.5 13.7 46 30-75 145-195 (426)
31 PRK14573 bifunctional D-alanyl 98.5 2.8E-06 6.1E-11 90.3 16.0 170 30-251 612-788 (809)
32 PRK12767 carbamoyl phosphate s 98.5 3.2E-06 6.9E-11 80.0 14.2 54 28-92 148-201 (326)
33 PRK13790 phosphoribosylamine-- 98.4 4.8E-06 1E-10 81.0 14.8 56 30-91 104-160 (379)
34 PRK00885 phosphoribosylamine-- 98.4 1.2E-05 2.6E-10 79.1 17.8 54 30-89 139-197 (420)
35 PRK06019 phosphoribosylaminoim 98.4 8.8E-06 1.9E-10 78.9 16.4 44 29-75 136-180 (372)
36 TIGR01435 glu_cys_lig_rel glut 98.4 4.9E-06 1.1E-10 86.6 14.4 55 30-93 513-570 (737)
37 PRK06524 biotin carboxylase-li 98.4 1.2E-05 2.7E-10 79.9 16.6 142 30-229 183-327 (493)
38 TIGR01142 purT phosphoribosylg 98.4 1.2E-05 2.5E-10 77.9 15.7 47 29-75 137-186 (380)
39 TIGR00514 accC acetyl-CoA carb 98.4 9.9E-06 2.1E-10 80.5 15.3 47 30-76 154-205 (449)
40 PF02955 GSH-S_ATP: Prokaryoti 98.4 3.4E-06 7.3E-11 73.2 10.2 68 31-114 34-105 (173)
41 PRK12458 glutathione synthetas 98.4 3.3E-06 7.2E-11 80.9 11.1 57 30-93 164-222 (338)
42 TIGR01380 glut_syn glutathione 98.3 4E-06 8.6E-11 79.5 11.4 56 30-93 155-214 (312)
43 TIGR00877 purD phosphoribosyla 98.3 1.6E-05 3.4E-10 78.2 16.0 52 31-88 143-198 (423)
44 PRK14016 cyanophycin synthetas 98.3 6E-06 1.3E-10 86.7 13.2 54 30-92 251-305 (727)
45 COG1181 DdlA D-alanine-D-alani 98.3 7.1E-06 1.5E-10 77.9 11.9 144 25-232 139-293 (317)
46 PRK06111 acetyl-CoA carboxylas 98.3 1.7E-05 3.7E-10 78.6 14.8 46 30-75 154-204 (450)
47 PRK13278 purP 5-formaminoimida 98.3 2.1E-05 4.5E-10 75.9 14.7 151 29-225 150-312 (358)
48 PRK07206 hypothetical protein; 98.3 1.5E-05 3.2E-10 78.2 14.0 55 30-90 148-208 (416)
49 TIGR01235 pyruv_carbox pyruvat 98.3 1.2E-05 2.7E-10 87.7 14.2 138 30-228 154-296 (1143)
50 PRK08591 acetyl-CoA carboxylas 98.2 3E-05 6.6E-10 76.9 15.3 47 30-76 154-205 (451)
51 PRK08462 biotin carboxylase; V 98.2 2.3E-05 5E-10 77.7 13.8 48 29-76 155-207 (445)
52 TIGR02068 cya_phycin_syn cyano 98.2 3.3E-05 7.1E-10 82.7 15.8 54 30-92 250-304 (864)
53 PRK02471 bifunctional glutamat 98.2 3.1E-05 6.7E-10 81.5 14.9 54 30-92 526-582 (752)
54 PRK08463 acetyl-CoA carboxylas 98.2 4.4E-05 9.4E-10 76.6 15.4 47 30-76 154-205 (478)
55 PRK02186 argininosuccinate lya 98.2 1.9E-05 4E-10 84.9 13.3 57 30-92 144-200 (887)
56 PRK09288 purT phosphoribosylgl 98.2 6.1E-05 1.3E-09 73.3 15.2 47 29-75 150-199 (395)
57 PRK06849 hypothetical protein; 98.2 1.4E-05 3E-10 77.9 10.6 53 28-90 152-204 (389)
58 PRK05586 biotin carboxylase; V 98.2 4.6E-05 1E-09 75.7 14.6 57 30-93 154-215 (447)
59 PRK06395 phosphoribosylamine-- 98.1 8.8E-05 1.9E-09 73.5 14.9 72 172-249 246-317 (435)
60 PRK12833 acetyl-CoA carboxylas 98.1 9.4E-05 2E-09 74.0 15.1 47 30-76 157-208 (467)
61 PRK07178 pyruvate carboxylase 98.1 0.00015 3.2E-09 72.7 16.4 47 30-76 153-204 (472)
62 PRK08654 pyruvate carboxylase 98.1 0.0001 2.2E-09 74.3 15.1 47 30-76 154-205 (499)
63 PRK12999 pyruvate carboxylase; 98.0 0.00014 2.9E-09 79.9 15.9 58 30-94 158-220 (1146)
64 PRK13277 5-formaminoimidazole- 98.0 8.9E-05 1.9E-09 71.1 12.5 59 28-92 152-218 (366)
65 COG1821 Predicted ATP-utilizin 98.0 1.4E-05 3E-10 72.4 6.6 30 198-229 231-260 (307)
66 PRK05294 carB carbamoyl phosph 98.0 0.00015 3.3E-09 79.4 16.0 55 30-90 706-762 (1066)
67 PLN02948 phosphoribosylaminoim 98.0 0.0002 4.3E-09 73.4 15.8 45 30-75 158-203 (577)
68 TIGR01369 CPSaseII_lrg carbamo 97.8 0.00025 5.5E-09 77.5 14.5 57 30-91 706-763 (1050)
69 PRK12815 carB carbamoyl phosph 97.8 0.00065 1.4E-08 74.5 16.2 54 29-89 706-759 (1068)
70 PF01071 GARS_A: Phosphoribosy 97.8 0.00091 2E-08 59.0 13.8 143 30-226 40-190 (194)
71 PLN02735 carbamoyl-phosphate s 97.7 0.00039 8.4E-09 76.3 13.9 55 30-89 739-794 (1102)
72 PRK05784 phosphoribosylamine-- 97.7 0.0012 2.5E-08 66.5 14.8 70 175-248 264-333 (486)
73 PLN02735 carbamoyl-phosphate s 97.7 0.00093 2E-08 73.3 15.1 46 30-75 182-228 (1102)
74 COG0439 AccC Biotin carboxylas 97.6 0.00088 1.9E-08 66.4 13.2 47 31-77 155-206 (449)
75 PF02786 CPSase_L_D2: Carbamoy 97.6 0.0028 6E-08 56.8 15.3 157 31-251 41-205 (211)
76 TIGR02712 urea_carbox urea car 97.5 0.0021 4.6E-08 71.1 15.3 48 29-76 151-203 (1201)
77 PRK05294 carB carbamoyl phosph 97.5 0.0016 3.4E-08 71.5 14.0 46 30-75 165-211 (1066)
78 TIGR01369 CPSaseII_lrg carbamo 97.5 0.0024 5.2E-08 70.0 15.2 46 30-75 164-210 (1050)
79 COG4770 Acetyl/propionyl-CoA c 97.3 0.0094 2E-07 59.8 15.4 162 30-254 154-321 (645)
80 PF02222 ATP-grasp: ATP-grasp 97.2 0.035 7.5E-07 48.2 16.8 126 30-228 30-164 (172)
81 PRK12815 carB carbamoyl phosph 97.1 0.012 2.6E-07 64.7 15.1 46 30-75 165-211 (1068)
82 PF15632 ATPgrasp_Ter: ATP-gra 96.9 0.017 3.6E-07 55.2 12.7 29 201-229 257-285 (329)
83 COG0151 PurD Phosphoribosylami 96.6 0.098 2.1E-06 51.1 15.6 167 29-247 139-311 (428)
84 PF05770 Ins134_P3_kin: Inosit 96.4 0.066 1.4E-06 50.6 12.9 162 24-237 134-301 (307)
85 KOG0238|consensus 95.8 0.2 4.4E-06 49.9 13.1 163 30-255 150-318 (670)
86 PF14403 CP_ATPgrasp_2: Circul 95.4 0.036 7.9E-07 54.9 6.5 79 27-114 337-426 (445)
87 COG1038 PycA Pyruvate carboxyl 94.9 0.28 6E-06 51.5 11.3 58 30-94 160-222 (1149)
88 KOG0369|consensus 94.8 0.17 3.6E-06 52.1 9.3 58 30-94 186-248 (1176)
89 COG2232 Predicted ATP-dependen 94.7 0.25 5.5E-06 46.8 9.7 26 202-228 252-277 (389)
90 COG0027 PurT Formate-dependent 93.8 0.9 2E-05 43.0 11.1 55 30-93 151-208 (394)
91 PF02750 Synapsin_C: Synapsin, 93.7 0.16 3.5E-06 44.7 5.8 44 199-242 152-197 (203)
92 COG0458 CarB Carbamoylphosphat 93.7 2 4.2E-05 42.0 13.7 46 30-75 152-198 (400)
93 KOG2158|consensus 88.8 0.094 2E-06 51.6 -0.8 52 198-250 12-63 (565)
94 TIGR02049 gshA_ferroox glutama 88.7 7.3 0.00016 37.7 11.7 117 2-131 232-361 (403)
95 PF08886 GshA: Glutamate-cyste 87.7 2.6 5.6E-05 40.9 8.0 121 2-131 235-364 (404)
96 COG2308 Uncharacterized conser 86.0 1.3 2.8E-05 43.7 5.1 77 31-114 368-456 (488)
97 PHA02117 glutathionylspermidin 84.5 1.8 4E-05 42.5 5.4 59 30-92 309-367 (397)
98 PF07065 D123: D123; InterPro 84.1 9.3 0.0002 36.1 9.8 26 201-226 214-240 (299)
99 PF04174 CP_ATPgrasp_1: A circ 82.9 1.6 3.4E-05 41.9 4.2 28 199-226 66-93 (330)
100 PRK10507 bifunctional glutathi 75.2 4.6 0.0001 41.9 5.0 84 6-92 495-588 (619)
101 COG1759 5-formaminoimidazole-4 65.3 1E+02 0.0022 29.6 11.0 48 28-75 150-203 (361)
102 KOG3895|consensus 63.8 51 0.0011 31.9 8.9 52 199-250 341-394 (488)
103 COG0754 Gsp Glutathionylspermi 60.5 5.8 0.00013 38.2 2.0 45 31-77 299-343 (387)
104 PF04174 CP_ATPgrasp_1: A circ 57.0 8.2 0.00018 37.0 2.5 39 29-71 288-330 (330)
105 PF14243 DUF4343: Domain of un 55.5 14 0.00031 30.3 3.3 27 202-228 93-119 (130)
106 PF04556 DpnII: DpnII restrict 50.8 13 0.00029 34.8 2.7 23 204-226 196-218 (286)
107 COG2308 Uncharacterized conser 43.4 44 0.00095 33.3 5.1 50 197-246 141-191 (488)
108 TIGR01016 sucCoAbeta succinyl- 41.6 86 0.0019 30.4 7.0 56 30-90 42-113 (386)
109 PF13635 DUF4143: Domain of un 36.9 34 0.00073 25.8 2.6 19 205-223 71-89 (90)
110 KOG2983|consensus 32.4 1.2E+02 0.0026 28.2 5.8 50 3-59 86-137 (334)
111 PF08442 ATP-grasp_2: ATP-gras 31.0 2.6E+02 0.0056 24.7 7.7 31 29-59 40-74 (202)
112 PHA02117 glutathionylspermidin 29.6 47 0.001 32.7 2.9 27 202-228 106-134 (397)
113 COG0634 Hpt Hypoxanthine-guani 29.5 1.2E+02 0.0027 26.4 5.1 59 25-89 76-142 (178)
114 PF07494 Reg_prop: Two compone 29.1 58 0.0013 18.2 2.1 13 206-218 8-20 (24)
115 PF13020 DUF3883: Domain of un 28.8 50 0.0011 25.0 2.4 24 202-225 27-51 (91)
116 PHA02762 hypothetical protein; 27.6 62 0.0014 22.4 2.4 23 207-229 2-24 (62)
117 PF14305 ATPgrasp_TupA: TupA-l 26.4 1.5E+02 0.0032 26.9 5.5 28 201-229 195-222 (239)
118 cd00228 eu-GS Eukaryotic Gluta 26.2 1.7E+02 0.0037 29.6 6.2 46 198-243 113-162 (471)
119 COG0754 Gsp Glutathionylspermi 25.1 63 0.0014 31.3 2.8 28 202-229 97-126 (387)
120 COG5321 Uncharacterized protei 24.9 59 0.0013 27.0 2.2 52 209-263 55-107 (164)
121 PF03749 SfsA: Sugar fermentat 21.8 76 0.0017 28.5 2.6 25 200-224 100-124 (215)
122 PF13592 HTH_33: Winged helix- 21.4 1.3E+02 0.0028 20.9 3.2 26 148-173 2-27 (60)
123 PF08972 DUF1902: Domain of un 21.3 2.9E+02 0.0064 19.2 4.9 44 205-248 2-48 (54)
124 PF06319 DUF1052: Protein of u 21.2 83 0.0018 26.8 2.5 54 205-261 50-105 (157)
No 1
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=100.00 E-value=1.4e-55 Score=412.50 Aligned_cols=244 Identities=33% Similarity=0.639 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcCCcceEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCc
Q psy10924 4 VFARAKHVVESVEEYNKQEMYDGTHNVWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGV 83 (322)
Q Consensus 4 ~~~~~~~~l~~~~~~~pq~~~~~~~~~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~gr 83 (322)
|+.+...+..+..++ .++......++||+||+++++|+||+++++++++.++... ....|||||||+||+|++||
T Consensus 42 ~~p~t~~l~~~~~~~-~~~~~~~~~~~wI~KP~~~~rG~GI~l~~~~~~i~~~~~~----~~~~~vvQkYI~~PlLi~gr 116 (292)
T PF03133_consen 42 FYPETFILPQDYKEF-LKYFEKNPKNLWIVKPSNGSRGRGIKLFNNLEQILRFSKN----KNQPYVVQKYIENPLLIDGR 116 (292)
T ss_dssp -------HHHHHHHH-HHHHHTTS---EEEEES-------EEEES-HHHHHCCHCC----TTS-EEEEE--SSB--BTTB
T ss_pred CCcceEecHHHHHHH-HHHHhcCCCCEEEEeccccCCCCCceecCCHHHHHHHhhh----hhhhhhhhhccCCCeEEeee
Confidence 455555555554444 3344555558999999999999999999999998864211 16789999999999999999
Q ss_pred eeeEEEEEEEeeecCcEEEEecceEEEecCCCCC--CCcc-cccccchhhhhhhhcccCCCCCCCCCCCccchHHHHHHH
Q psy10924 84 KFDLRVWYVITNIDKFKIWVYHEGYVRFCSKPYS--NILL-DEARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRDYF 160 (322)
Q Consensus 84 KFDiR~yvlvts~~pl~vy~y~~g~vR~s~~~y~--~~~~-d~~~HLTN~~iqk~~~~~~~~~~~~~~~~ws~~~~~~~L 160 (322)
|||||+||||||++|+++|+|++||+|+|+.+|+ ..+. +.++||||+++|+..+....+.....+++|++..|..++
T Consensus 117 KFDlR~yvlvts~~pl~vy~y~~g~vR~~~~~Y~~~~~~~~~~~~HlTN~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (292)
T PF03133_consen 117 KFDLRVYVLVTSLNPLRVYLYKEGYVRFASEPYDPDLDDLSDRFAHLTNYSIQKKSESNEEDSNEENGNKWSLDQFEEYL 196 (292)
T ss_dssp -EEEEEEEEE-T--T--EEEES--EEEE-SS------------------------------------EEEHHHHHHHCTT
T ss_pred eEEEEEEEEEeeccceeeeeccCceEEeccceeeccccccccccccccccccccccccccccccccccccchhhhhhhhc
Confidence 9999999999999999999999999999999999 4554 579999999999995522233445578899999999888
Q ss_pred HHhcCChhhHHHHHHHHHHHHHHH-HHHhccccccccCCCceeEEeeeEEeecCCceEEEEecCCCCCCCCChhHHHHHH
Q psy10924 161 TKNMNLPRKWDMIMKAMEESIVTI-MRCAQSINYIDLRKNSFQLFGADFLIHENYQPCLIEVNNGPGLSPTTSIIAKKTT 239 (322)
Q Consensus 161 ~~~~g~~~~~~~i~~~i~~~i~~~-l~a~~~~~~~~~~~~~Fel~G~DfllD~~~kpwLIEVN~~P~l~~~~~~~~~l~~ 239 (322)
......+..|.++.+.+.+.+..+ ..++.. .+..+.+|||+||+|||||++++|||||||++|++..+++.+..+++
T Consensus 197 ~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~--~~~~~~~~Fel~G~DfmlD~~~kpwLLEvN~~Psl~~~~~~~~~~~~ 274 (292)
T PF03133_consen 197 KEGIDWEKIWEKICDIIIKTILAAEFRSSQP--NMPPRPNCFELFGFDFMLDEDLKPWLLEVNSNPSLSTSTPVDKELKP 274 (292)
T ss_dssp TSSS-STTTCHHHHHHHHHHHHHH-HHHHH----TTSSSEE-EEEEEEEEEBTTS-EEEEEEESS------TTTHHHHHH
T ss_pred ccCCCcccchhhhhHHHHHHhhhhhhhhccc--cccccccccceeeeEEEecCCCeEEEeeCCCCCCcccCCHhHHHHHH
Confidence 762222344555544444444444 344444 67788999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhchhcCCC
Q psy10924 240 ELLTDMVKVVTAERN 254 (322)
Q Consensus 240 ~li~d~l~lv~d~~~ 254 (322)
+|++|+|++++++..
T Consensus 275 ~li~d~l~i~v~~~~ 289 (292)
T PF03133_consen 275 QLIDDLLKIVVDPDK 289 (292)
T ss_dssp HHHHHTTTTTS----
T ss_pred HHHHHHhEEEeCCCC
Confidence 999999999887653
No 2
>KOG2157|consensus
Probab=100.00 E-value=1.3e-51 Score=402.88 Aligned_cols=265 Identities=29% Similarity=0.481 Sum_probs=237.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcCCcceEEEeCCCCCCCCCeEEeCChhHHHHHHhhC----CCCCCCceeEeecccccc
Q psy10924 3 HVFARAKHVVESVEEYNKQEMYDGTHNVWVLKPVANCSGHGIRIYRQLEDIKRAIGTL----KNLTCPRCVVQKYIEKPL 78 (322)
Q Consensus 3 ~~~~~~~~~l~~~~~~~pq~~~~~~~~~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~----~~~~~~~~IvQkYI~~Pl 78 (322)
+|++.|..++.+.....+++..++.++.||+||++.++|+||+++++++++.++.... .......|++|+||++|+
T Consensus 174 d~~~~~~~~~~~~~~~v~e~~~~~~~~~wIvKP~~~srg~GI~~~~~l~~l~~~~~~~~~~~s~~~~~~~vv~~yi~~pl 253 (497)
T KOG2157|consen 174 DYVETTFVLLDEYKKLVEEYEEDSERSWWIVKPASKSRGRGIFLFNTLSDLQAIVDSFDSFISENNDEGYVVSAYIDRPL 253 (497)
T ss_pred cccchhhhhhhHHHHHHHHHHhccccceEEeccccccccceeEEecchhhhhhhhhcccccccccccccceeeeeccCcc
Confidence 5788899999999999999999999999999999999999999999999999987531 111267899999999999
Q ss_pred ccCCceeeEEEEEEEeeecCcEEEEecceEEEecCCCCC-CCccc-ccccchhhhhhhhcccCC-CCCCCCCCCccchHH
Q psy10924 79 LIHGVKFDLRVWYVITNIDKFKIWVYHEGYVRFCSKPYS-NILLD-EARHLTNVRIQKQYRNVR-DPPQLPAELMWDFKQ 155 (322)
Q Consensus 79 Li~grKFDiR~yvlvts~~pl~vy~y~~g~vR~s~~~y~-~~~~d-~~~HLTN~~iqk~~~~~~-~~~~~~~~~~ws~~~ 155 (322)
+++|+|||||.||++|+++|+.+|.|++|++|||+.+|+ ..+++ .++||||+++||+++++. .++..+.+++|++..
T Consensus 254 li~~~KfDlR~~vlvt~~~pl~~y~yreg~lRf~t~~y~~~~nl~n~~~HLtN~siqK~~~~~~~~~s~~~~~~~w~~~~ 333 (497)
T KOG2157|consen 254 LIGGHKFDLRQYVLVTHFDPLLLYRYREGFLRFSTEPYGPLVNLQNMSVHLTNVSIQKLYPNYCHLSSLLSESCKWTLNS 333 (497)
T ss_pred ccCCceeeeeEEEEeecccchhheeeccceEEEEeccCcchhhhcccchhhhccccccCCCCcccccccccCCCcccHHH
Confidence 999999999999999999999999999999999999999 88887 799999999999999887 334455899999999
Q ss_pred HHHHHHHhcCChhhHHH-HHHHHHHHHHHHHHHhccccccccCCCceeEEeeeEEeecCCceEEEEecCCCCCCCCChhH
Q psy10924 156 LRDYFTKNMNLPRKWDM-IMKAMEESIVTIMRCAQSINYIDLRKNSFQLFGADFLIHENYQPCLIEVNNGPGLSPTTSII 234 (322)
Q Consensus 156 ~~~~L~~~~g~~~~~~~-i~~~i~~~i~~~l~a~~~~~~~~~~~~~Fel~G~DfllD~~~kpwLIEVN~~P~l~~~~~~~ 234 (322)
|..||+. .|....+.. .++.+...|..++.++++ .+....+|||+||+|||+|++++|||||||++|+++.++..+
T Consensus 334 ~~~yl~~-~~~~~~~~~~~i~~~~~~iv~~v~~s~~--~~~~~~n~FElyG~DfliD~~lkpwLiEiNssP~~~~t~~~d 410 (497)
T KOG2157|consen 334 LLLYLRN-IGSPCLELKLQIKPIITGIVLSVFASAT--TVPSLANCFELYGFDFLIDEALKPWLIEINASPDLTQTTKND 410 (497)
T ss_pred HHHHHHh-hcCCcccccccchhhhhhhhhhhhhhcc--ccccccchhhhhCcceeecCCCCeEEEEeecCCcccccchhh
Confidence 9999998 776555444 488888899999999988 888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhchhcCCCCCCCCCCCcCCCCeEEEEecc
Q psy10924 235 AKKTTELLTDMVKVVTAERNPLSSFQNSVDTGKFHLIYCKE 275 (322)
Q Consensus 235 ~~l~~~li~d~l~lv~d~~~p~~~~~~~~~~g~f~li~~~~ 275 (322)
..++..++.|++.+++++.. .+++..|.|+.++...
T Consensus 411 ~~l~~~l~~d~l~~v~~~~~-----~~~~~~~~~~~~~~~~ 446 (497)
T KOG2157|consen 411 ARLKSKLIDDVLKVVVDPRL-----DPNQAWGVDELASLFN 446 (497)
T ss_pred hHHHHHHHHHhhccccCccc-----ccccccCCCcchhhcc
Confidence 99999999999999998877 6677777777777654
No 3
>KOG2156|consensus
Probab=100.00 E-value=1.2e-45 Score=352.68 Aligned_cols=214 Identities=31% Similarity=0.553 Sum_probs=187.1
Q ss_pred cceEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEEEeeecCcEEEEecce
Q psy10924 28 HNVWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIWVYHEG 107 (322)
Q Consensus 28 ~~~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvts~~pl~vy~y~~g 107 (322)
...|||||.+..||-||.++++..++ ++.++.|||+||++|+||+|.|||+|+||.|||++||+||+|++|
T Consensus 305 sr~wIVkppasaRg~gIrv~~kw~q~---------pk~rpLvvQ~yieRP~ling~KFDlrlYv~vts~nPLRIy~y~dg 375 (662)
T KOG2156|consen 305 SRLWIVKPPASARGIGIRVINKWSQF---------PKDRPLVVQKYIERPLLINGSKFDLRLYVVVTSVNPLRIYIYNDG 375 (662)
T ss_pred cccEEecCcccccCcceEeccchhhC---------CCcccHHHHHHhhcceeecCcceeEEEEEEEeecCceEEEEeccc
Confidence 34599999999999999999998765 236788999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCC---cccccccchhhhhhhhcccCC--CCCCCCCCCccchHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q psy10924 108 YVRFCSKPYSNI---LLDEARHLTNVRIQKQYRNVR--DPPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIMKAMEESIV 182 (322)
Q Consensus 108 ~vR~s~~~y~~~---~~d~~~HLTN~~iqk~~~~~~--~~~~~~~~~~ws~~~~~~~L~~~~g~~~~~~~i~~~i~~~i~ 182 (322)
++|||+.+|+.. +.|+++|+||+++++... |. .+-....|.+|++..+..++.+ .|.+ .++|+++|+.+|+
T Consensus 376 L~RFasvkYsp~~a~~~dKymhltnYs~nke~~-ys~~k~~n~~~g~kwtl~~lw~~l~~-qGvd--t~kIW~qir~iV~ 451 (662)
T KOG2156|consen 376 LVRFASVKYSPFDANNVDKYMHLTNYSPNKESN-YSLNKYFNACQGSKWTLKSLWLYLDN-QGVD--TDKIWEQIRNIVI 451 (662)
T ss_pred eeeeccccCCcccccccceeEEeccccccccch-hhhhhHHhhcCCchhhHHHHHHHHHh-cCCC--HHHHHHHHHHHHH
Confidence 999999999974 457899999999999755 32 1222347999999999999998 8864 4789999999999
Q ss_pred HHHHHhccc------cccccCCCceeEEeeeEEeecCCceEEEEecCCCCCCCCChhHHHHHHHHHHHHhhchhcCCC
Q psy10924 183 TIMRCAQSI------NYIDLRKNSFQLFGADFLIHENYQPCLIEVNNGPGLSPTTSIIAKKTTELLTDMVKVVTAERN 254 (322)
Q Consensus 183 ~~l~a~~~~------~~~~~~~~~Fel~G~DfllD~~~kpwLIEVN~~P~l~~~~~~~~~l~~~li~d~l~lv~d~~~ 254 (322)
.++.+.+.. +...+...|||||||||++|++++|||+|||.+|+++..++.+-.++..|+.+++.++.-..+
T Consensus 452 kti~s~E~~i~~~lr~~~~~~~~CfELfgFDiilDedLkpwLlEVNISPSLhS~tpld~~vk~~li~~vlNlagi~~p 529 (662)
T KOG2156|consen 452 KTIISGEKGINSMLRNYVENPYSCFELFGFDIILDEDLKPWLLEVNISPSLHSETPLDCSVKAPLIQDVLNLAGIKVP 529 (662)
T ss_pred HHhhccChhHHHHHHHHhcCCchhhhhhcceEEecCccceeeEEEecccccccCCCccchhhhHHHHHHHHhcceecC
Confidence 999988762 134566789999999999999999999999999999999999999999999999999765443
No 4
>KOG2158|consensus
Probab=99.97 E-value=2.3e-31 Score=252.02 Aligned_cols=207 Identities=23% Similarity=0.376 Sum_probs=165.2
Q ss_pred ceEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeecccccccc-CCceeeEEEEEEEeeecCcEEEEecce
Q psy10924 29 NVWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLI-HGVKFDLRVWYVITNIDKFKIWVYHEG 107 (322)
Q Consensus 29 ~~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi-~grKFDiR~yvlvts~~pl~vy~y~~g 107 (322)
.++|+||..|.+|.||.+++++.++..+ ..-++|+||..|||+ |+.|||+|+|++++|++|+.+|++++|
T Consensus 227 rtfivkpDsgaqg~giylisDir~~g~~---------Q~~~vQeyV~~pLli~dkyKfd~rvy~likSvdPlsIfva~eG 297 (565)
T KOG2158|consen 227 RTFIVKPDSGAQGSGIYLISDIREKGEY---------QNKKVQEYVTYPLLISDKYKFDQRVYSLIKSVDPLSIFVASEG 297 (565)
T ss_pred ccEEECCCCCCCCcceeeechhhhhhHH---------HHHHHHHHhcccccccccceeeeeeeeeeeccCcceEEEeccc
Confidence 3889999999999999999876655432 347899999999999 999999999999999999999999999
Q ss_pred EEEecCCCCCC---Cccc-ccccchhhhhhhhcccCCCCC-CCCCCCccchHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q psy10924 108 YVRFCSKPYSN---ILLD-EARHLTNVRIQKQYRNVRDPP-QLPAELMWDFKQLRDYFTKNMNLPRKWDMIMKAMEESIV 182 (322)
Q Consensus 108 ~vR~s~~~y~~---~~~d-~~~HLTN~~iqk~~~~~~~~~-~~~~~~~ws~~~~~~~L~~~~g~~~~~~~i~~~i~~~i~ 182 (322)
.+|||+++|.. .|.+ .++||||+++++.+.+|.-+. ....|++-.++.....|.+ .|.+ ...++..|+.+++
T Consensus 298 laRFcTeky~ePts~n~~~lymhlTnYslnk~nsny~hsd~sq~~gSkR~Lsti~~ql~s-~gvd--tk~vwsDik~v~i 374 (565)
T KOG2158|consen 298 LARFCTEKYIEPTSANRSHLYMHLTNYSLNKPNSNYAHSDNSQVSGSKRQLSTINEQLDS-LGVD--TKFVWSDIKIVFI 374 (565)
T ss_pred hhhhhhccccCCCcccHHHHHHHHHHhhhcCCCccccccCcccccchhHHHHHHHHHHHh-cCch--HHHHHhhhhhhhc
Confidence 99999999985 3443 599999999999999987322 3345666677777777887 7753 3556777888888
Q ss_pred HHHHHhcccc------cc---ccCCCceeEEeeeEEeecCCceEEEEecCCCCCCCCChhHHHHHHHHHHHHhhch
Q psy10924 183 TIMRCAQSIN------YI---DLRKNSFQLFGADFLIHENYQPCLIEVNNGPGLSPTTSIIAKKTTELLTDMVKVV 249 (322)
Q Consensus 183 ~~l~a~~~~~------~~---~~~~~~Fel~G~DfllD~~~kpwLIEVN~~P~l~~~~~~~~~l~~~li~d~l~lv 249 (322)
.+..|.-+.. .+ .....||+++|||++.+.++.|.|+|||..|++....-++.+. .+|.++++++
T Consensus 375 ktvlA~~peLk~~y~~~fp~h~tgpacfqi~gfDi~~~~k~~pillevnrapslr~~~~vd~e~--~ll~~~~n~v 448 (565)
T KOG2158|consen 375 KTVLAESPELKEDYIDNFPYHKTGPACFQIIGFDIVKQRKVLPILLEVNRAPSLRIWKVVDVEE--VLLYRIFNRV 448 (565)
T ss_pred chhhhcCHHHHHHHHHhCCCCCcCCceEEEeccchhhccccchHHHHhcccccccccccCCCch--hHHHhhhhhh
Confidence 8888765521 12 2456899999999999999999999999999998765544433 4555555543
No 5
>KOG2155|consensus
Probab=99.92 E-value=8.7e-26 Score=212.95 Aligned_cols=215 Identities=23% Similarity=0.390 Sum_probs=172.7
Q ss_pred HHHHHHhhhhhhhcCCcceEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEE
Q psy10924 12 VESVEEYNKQEMYDGTHNVWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWY 91 (322)
Q Consensus 12 l~~~~~~~pq~~~~~~~~~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yv 91 (322)
|.||-+++.+.+.+|..|+||+||.+..||-...+..++++|.+.++ ..+-|+||||++|+|+.|-|||||..|
T Consensus 396 LpqFv~~fq~Rer~g~~N~WI~KPWNlAR~~Dt~vT~~L~~IIRm~E------tgPKiv~kYIe~P~LFr~gKFDlRYiV 469 (631)
T KOG2155|consen 396 LPQFVARFQNRERNGQHNVWIVKPWNLARGMDTTVTEDLNQIIRMIE------TGPKIVCKYIERPLLFRNGKFDLRYIV 469 (631)
T ss_pred hHHHHHHHHHHHhcCcCceEEechhhhhhcccchhhhhHHHHHHHHh------cCchHHHHhcCCcceeecCccceEEEE
Confidence 67888889999999999999999999999999999999999999998 467899999999999988899999999
Q ss_pred EEeeecCcEEEEecceEEEecCCCCCCCcccc-cccchhhhhhhhcccCCCCCCCCCCCccchHHHHHHHHHhcCChhhH
Q psy10924 92 VITNIDKFKIWVYHEGYVRFCSKPYSNILLDE-ARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKW 170 (322)
Q Consensus 92 lvts~~pl~vy~y~~g~vR~s~~~y~~~~~d~-~~HLTN~~iqk~~~~~~~~~~~~~~~~ws~~~~~~~L~~~~g~~~~~ 170 (322)
++.|+.|+++|+|.--.+|||..+|+++|++. ..|.|-...-.+ -+....++|-.-+.+ .-....|
T Consensus 470 llrsi~Pl~~yvy~~FWiRfsnn~fsL~~f~dyEtHFTVmNY~~k------------l~q~~ceeFi~~~ek-~yp~~pw 536 (631)
T KOG2155|consen 470 LLRSIAPLTAYVYNRFWIRFSNNEFSLSNFEDYETHFTVMNYLEK------------LLQMKCEEFIGEFEK-GYPCFPW 536 (631)
T ss_pred EEccccchhhhheeheeeeecCCccchhhhhhhhhhhhhhhHHHH------------HhhccHHHHHHHHhh-cCCCCCc
Confidence 99999999999999999999999999999865 689885332211 111234556555555 2334578
Q ss_pred HHHHHHHHHHHHHHHHHhccc---cccccCCCceeEEeeeEEe--ecC--CceEEEEecCCCCCCCCChhHHHHHHHHHH
Q psy10924 171 DMIMKAMEESIVTIMRCAQSI---NYIDLRKNSFQLFGADFLI--HEN--YQPCLIEVNNGPGLSPTTSIIAKKTTELLT 243 (322)
Q Consensus 171 ~~i~~~i~~~i~~~l~a~~~~---~~~~~~~~~Fel~G~Dfll--D~~--~kpwLIEVN~~P~l~~~~~~~~~l~~~li~ 243 (322)
.++...|..++.+.+.++... ......+++-.+||+|+|+ |.+ .+|-|||||.+|+....+.... ....
T Consensus 537 ~dvq~~i~~aire~~eaaak~~~e~g~a~~p~sramygvDlml~~~~~pVmq~qILEVNFnPDc~RACrYhp----dFfn 612 (631)
T KOG2155|consen 537 EDVQCSIVPAIREPFEAAAKLNPECGAALLPNSRAMYGVDLMLAGDLTPVMQPQILEVNFNPDCKRACRYHP----DFFN 612 (631)
T ss_pred chhhhHHHHHHHHHHhhhhccCCcccccCCchhhhhhhheeeeccCCCccccceeEEEecCcchHHHhhcCh----hHHH
Confidence 888888888888888877652 2333456778999999999 666 8899999999999987666544 4445
Q ss_pred HHhhch
Q psy10924 244 DMVKVV 249 (322)
Q Consensus 244 d~l~lv 249 (322)
++|.-+
T Consensus 613 nVFstL 618 (631)
T KOG2155|consen 613 NVFSTL 618 (631)
T ss_pred hHHHHh
Confidence 555433
No 6
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=99.89 E-value=2.5e-21 Score=178.66 Aligned_cols=163 Identities=23% Similarity=0.286 Sum_probs=117.9
Q ss_pred ceEEEeCCCCCCCCCeEE----------------------eCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceee
Q psy10924 29 NVWVLKPVANCSGHGIRI----------------------YRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFD 86 (322)
Q Consensus 29 ~~WIvKP~~~s~G~GI~~----------------------~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFD 86 (322)
+.-++||..||+|+||.. +.+.+++..++.... ..+.||||++|+ ...++||.||
T Consensus 56 ~~vylKP~~Gs~G~gI~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~yIiQq~I~-l~~~~gr~fD 132 (262)
T PF14398_consen 56 KSVYLKPDNGSKGKGIIRIEKKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKELL--GKRRYIIQQGIP-LATYDGRPFD 132 (262)
T ss_pred CEEEEEeCCCCCCccEEEEEEeCCEEEEEEccCCceeEEEeCCHHHHHHHHHHhc--CCCcEEEeCCcc-ccccCCCeEE
Confidence 468999999999999976 334567777776533 267999999998 6889999999
Q ss_pred EEEEEEEeeecCcEEEEecceEEEecCCCCCCCcccccccchhhhhhhhcccCCCCCCCCCCCccchHHHHHHHHHhcCC
Q psy10924 87 LRVWYVITNIDKFKIWVYHEGYVRFCSKPYSNILLDEARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMNL 166 (322)
Q Consensus 87 iR~yvlvts~~pl~vy~y~~g~vR~s~~~y~~~~~d~~~HLTN~~iqk~~~~~~~~~~~~~~~~ws~~~~~~~L~~~~g~ 166 (322)
+|+.|+....+. |-.....+|+|....-++|+.. +|..++++ ..|.. .
T Consensus 133 ~RvlvqK~~~G~---W~vtg~~~Rva~~~~ivTN~~~-----------------------GG~~~~~~---~~l~~-~-- 180 (262)
T PF14398_consen 133 FRVLVQKNGSGK---WQVTGIVARVAKPGSIVTNLSQ-----------------------GGTALPFE---EVLRQ-S-- 180 (262)
T ss_pred EEEEEEECCCCC---EEEEEEEEEEcCCCCceeccCC-----------------------CceecCHH---HHHHh-h--
Confidence 999999976444 5559999999988754433222 34444444 44444 2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhccccccccCCCc-eeEEeeeEEeecCCceEEEEecCCCCCCCCChh
Q psy10924 167 PRKWDMIMKAMEESIVTIMRCAQSINYIDLRKNS-FQLFGADFLIHENYQPCLIEVNNGPGLSPTTSI 233 (322)
Q Consensus 167 ~~~~~~i~~~i~~~i~~~l~a~~~~~~~~~~~~~-Fel~G~DfllD~~~kpwLIEVN~~P~l~~~~~~ 233 (322)
.....+..+|+++...+..+... ..+. |..+|+||.||.+|++||||||+.|+.......
T Consensus 181 -~~~~~~~~~l~~~a~~ia~~le~------~~~~~~gElGiDl~iD~~g~iWliEvN~kP~~~~~~~~ 241 (262)
T PF14398_consen 181 -EEAEKIREELEDLALEIAQALEK------HFGGHLGELGIDLGIDKNGKIWLIEVNSKPGKFDFRDI 241 (262)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHH------hcCCceeEEEEEEEEcCCCCEEEEEEeCCCCcchhhcc
Confidence 12445556666666555555443 2233 889999999999999999999999998776554
No 7
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.29 E-value=4.9e-11 Score=104.96 Aligned_cols=134 Identities=25% Similarity=0.391 Sum_probs=63.1
Q ss_pred EEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEEEeeecCcEEEEecceEEE
Q psy10924 31 WVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIWVYHEGYVR 110 (322)
Q Consensus 31 WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvts~~pl~vy~y~~g~vR 110 (322)
-|+||..|+.|+|+.++++.+++...+...... ....++|+||+.+ .| -|+|++|+-. ++ -.++.|
T Consensus 42 ~ViKp~~g~~G~gV~~i~~~~~~~~~l~~~~~~-~~~~~~Q~fI~~~---~g--~d~Rv~Vig~-----~v---v~a~~r 107 (190)
T PF08443_consen 42 VVIKPLRGSSGRGVFLINSPDELESLLDAFKRL-ENPILVQEFIPKD---GG--RDLRVYVIGG-----KV---VGAYRR 107 (190)
T ss_dssp EEEE-SB-------EEEESHCHHHHHHH------TTT-EEEE----S---S-----EEEEEETT-----EE---EEEEE-
T ss_pred EEEeeCCCCCCCEEEEecCHHHHHHHHHHHHhc-cCcceEeccccCC---CC--cEEEEEEECC-----EE---EEEEEE
Confidence 899999999999999999999988887642222 5678999999952 12 5999999842 22 112334
Q ss_pred ecCC-CCCCCcccccccchhhhhhhhcccCCCCCCCCCCCccchHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhc
Q psy10924 111 FCSK-PYSNILLDEARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIMKAMEESIVTIMRCAQ 189 (322)
Q Consensus 111 ~s~~-~y~~~~~d~~~HLTN~~iqk~~~~~~~~~~~~~~~~ws~~~~~~~L~~~~g~~~~~~~i~~~i~~~i~~~l~a~~ 189 (322)
.+.. .| .+|.+ .|.....-++-+++++++..++.+..
T Consensus 108 ~~~~~d~----------r~n~~--------------------------------~g~~~~~~~l~~e~~~~a~~~~~~lg 145 (190)
T PF08443_consen 108 SSPEGDF----------RTNLS--------------------------------RGGKVEPYDLPEEIKELALKAARALG 145 (190)
T ss_dssp -----------------------------------------------------------EE----HHHHHHHHHHHHHTT
T ss_pred ecCcccc----------hhhhc--------------------------------cCceEEEecCCHHHHHHHHHHHHHhC
Confidence 3322 11 12211 11100001223345566555555543
Q ss_pred cccccccCCCceeEEeeeEEeecCCceEEEEecCCCCCCCCCh
Q psy10924 190 SINYIDLRKNSFQLFGADFLIHENYQPCLIEVNNGPGLSPTTS 232 (322)
Q Consensus 190 ~~~~~~~~~~~Fel~G~DfllD~~~kpwLIEVN~~P~l~~~~~ 232 (322)
..+.|+| +++.++++|++|||.+|++.....
T Consensus 146 -----------l~~~giD-i~~~~~~~~v~EvN~~~~~~~~~~ 176 (190)
T PF08443_consen 146 -----------LDFAGID-ILDTNDGPYVLEVNPNPGFRGIEE 176 (190)
T ss_dssp ------------SEEEEE-EEEETTEEEEEEEETT---TTHHH
T ss_pred -----------CCEEEEE-EEecCCCeEEEEecCCchHhHHHH
Confidence 4789999 566677899999999999987533
No 8
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=9.3e-10 Score=104.32 Aligned_cols=137 Identities=22% Similarity=0.187 Sum_probs=89.4
Q ss_pred ceEEEeCCCCCCCCCeEEeCChh-HHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEEEeeecCcEEEEecce
Q psy10924 29 NVWVLKPVANCSGHGIRIYRQLE-DIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIWVYHEG 107 (322)
Q Consensus 29 ~~WIvKP~~~s~G~GI~~~~~~~-~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvts~~pl~vy~y~~g 107 (322)
.--|+||..||.|+||+++++.+ ++...++.........+++|+||+.+ +=|+|.++++... |...| +
T Consensus 156 ~pvVlKp~~Gs~G~gV~~v~~~d~~l~~~~e~~~~~~~~~~ivQeyi~~~------~~~~rrivv~~~~-~~~~y----~ 224 (318)
T COG0189 156 FPVVLKPLDGSGGRGVFLVEDADPELLSLLETLTQEGRKLIIVQEYIPKA------KRDDRRVLVGGGE-VVAIY----A 224 (318)
T ss_pred CCEEEeeCCCCCccceEEecCCChhHHHHHHHHhccccceEehhhhcCcc------cCCcEEEEEeCCE-EeEEe----e
Confidence 35899999999999999999998 87777766443223569999999975 3477777777431 33333 5
Q ss_pred EEEecCCCCCCCcccccccchhhhhhhhcccCCCCCCCCCCCccchHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH
Q psy10924 108 YVRFCSKPYSNILLDEARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIMKAMEESIVTIMRC 187 (322)
Q Consensus 108 ~vR~s~~~y~~~~~d~~~HLTN~~iqk~~~~~~~~~~~~~~~~ws~~~~~~~L~~~~g~~~~~~~i~~~i~~~i~~~l~a 187 (322)
+.|.+...=-. ||.+ .|......++-++++++...+..+
T Consensus 225 ~~R~~~~~~~R---------~N~a--------------------------------~Gg~~e~~~l~~e~~elA~kaa~~ 263 (318)
T COG0189 225 LARIPASGDFR---------SNLA--------------------------------RGGRAEPCELTEEEEELAVKAAPA 263 (318)
T ss_pred eccccCCCCce---------eecc--------------------------------ccccccccCCCHHHHHHHHHHHHH
Confidence 66655432111 1211 111111112233445555555554
Q ss_pred hccccccccCCCceeEEeeeEEeecCCceEEEEecCCCCCCC
Q psy10924 188 AQSINYIDLRKNSFQLFGADFLIHENYQPCLIEVNNGPGLSP 229 (322)
Q Consensus 188 ~~~~~~~~~~~~~Fel~G~DfllD~~~kpwLIEVN~~P~l~~ 229 (322)
.. ..++|+|++.+ +...+++|||.+|+...
T Consensus 264 lG-----------l~~~GVDiie~-~~g~~V~EVN~sP~~~~ 293 (318)
T COG0189 264 LG-----------LGLVGVDIIED-KDGLYVTEVNVSPTGKG 293 (318)
T ss_pred hC-----------CeEEEEEEEec-CCCcEEEEEeCCCcccc
Confidence 43 48999999999 88899999999998765
No 9
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.10 E-value=7.6e-10 Score=101.95 Aligned_cols=57 Identities=30% Similarity=0.373 Sum_probs=43.8
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCC--CCCceeEeeccccccccCCce-eeEEEEEE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNL--TCPRCVVQKYIEKPLLIHGVK-FDLRVWYV 92 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~--~~~~~IvQkYI~~PlLi~grK-FDiR~yvl 92 (322)
.+|+||..|+.|+|+.++++.+++...+...... ....+++|+||+. .. +|+|++++
T Consensus 125 p~vvKP~~g~~g~gv~~i~~~~~l~~~~~~~~~~~~~~~~~lvQe~I~~------~~~~~~rv~v~ 184 (277)
T TIGR00768 125 PVVLKPVFGSWGRLVSLARDKQAAETLLEHFEQLNGPQNLFYVQEYIKK------PGGRDIRVFVV 184 (277)
T ss_pred CEEEEECcCCCCCceEEEcCHHHHHHHHHHHHHhcccCCcEEEEeeecC------CCCceEEEEEE
Confidence 5999999999999999999998887655431110 1247999999983 33 69999986
No 10
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=99.08 E-value=4.3e-09 Score=93.73 Aligned_cols=150 Identities=20% Similarity=0.290 Sum_probs=87.0
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEEEeeecCcEEEEecceEE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIWVYHEGYV 109 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvts~~pl~vy~y~~g~v 109 (322)
.+|+||..+....||..+++.+++...+..-... ....+|++||+ ||-| .+-|+-. +...+. .-+-+
T Consensus 35 P~~VKP~~~GsS~Gi~~v~~~~el~~ai~~~~~~-~~~vlVEefI~------G~E~--tv~vl~~--~~~~~~--~~~ei 101 (203)
T PF07478_consen 35 PLFVKPASEGSSIGISKVHNEEELEEAIEKAFKY-DDDVLVEEFIS------GREF--TVGVLGN--GEPRVL--PPVEI 101 (203)
T ss_dssp SEEEEESSTSTTTTEEEESSHHHHHHHHHHHTTT-HSEEEEEE--S------SEEE--EEEEEES--SSTEEE--EEEEE
T ss_pred CEEEEECCCCccEEEEEcCCHHHHHHHHHHHhhh-cceEEEEeeec------ccce--EEEEEec--CCcccC--ceEEE
Confidence 4999999999999999999999999888763322 56899999996 8844 4445542 223321 11111
Q ss_pred EecCCCCCCCcccccccchhhhhhhhcccCCCCCCCCCCCccchHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhc
Q psy10924 110 RFCSKPYSNILLDEARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIMKAMEESIVTIMRCAQ 189 (322)
Q Consensus 110 R~s~~~y~~~~~d~~~HLTN~~iqk~~~~~~~~~~~~~~~~ws~~~~~~~L~~~~g~~~~~~~i~~~i~~~i~~~l~a~~ 189 (322)
.+...-|+- ..++.... ..... .-.......+..+|+++...++.+.
T Consensus 102 ~~~~~~~d~--------------~~Ky~~~~------~~~~~------------~~pa~l~~~~~~~i~~~a~~a~~~l- 148 (203)
T PF07478_consen 102 VFPSEFYDY--------------EAKYQPAD------SETEY------------IIPADLSEELQEKIKEIAKKAFKAL- 148 (203)
T ss_dssp EESSSEEEH--------------HHHHSGCC------SCEEE------------ESS-SS-HHHHHHHHHHHHHHHHHT-
T ss_pred EcCCCceeh--------------hheeccCC------CceEE------------EecCCCCHHHHHHHHHHHHHHHHHH-
Confidence 111111110 00000000 00000 0000122345566777777776654
Q ss_pred cccccccCCCceeEEeeeEEeecCCceEEEEecCCCCCCCCChhH
Q psy10924 190 SINYIDLRKNSFQLFGADFLIHENYQPCLIEVNNGPGLSPTTSII 234 (322)
Q Consensus 190 ~~~~~~~~~~~Fel~G~DfllD~~~kpwLIEVN~~P~l~~~~~~~ 234 (322)
+|-..-.+||.+|++++||+||||+.|+|+..+...
T Consensus 149 ---------g~~~~~RiD~rv~~~g~~~~lEiNt~PGlt~~S~~p 184 (203)
T PF07478_consen 149 ---------GCRGYARIDFRVDEDGKPYFLEINTIPGLTPTSLFP 184 (203)
T ss_dssp ---------TTCSEEEEEEEEETTTEEEEEEEESS-G-STTSHHH
T ss_pred ---------cCCCceeEEEEeccCCceEEEeccCcccccCCCHHH
Confidence 345678999999999999999999999999876553
No 11
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.08 E-value=7.6e-10 Score=104.09 Aligned_cols=57 Identities=25% Similarity=0.384 Sum_probs=44.2
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYV 92 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvl 92 (322)
.+|+||..|+.|+|++++++.+++...+...... ...++||+||+.. .-.|+|+.|+
T Consensus 137 P~VvKP~~g~~g~GV~~v~~~~~~~~~~~~~~~~-~~~~lvQe~I~~~-----~g~d~rv~vi 193 (300)
T PRK10446 137 PLVVKLVEGTQGIGVVLAETRQAAESVIDAFRGL-NAHILVQEYIKEA-----QGCDIRCLVV 193 (300)
T ss_pred CEEEEECCCCCcccEEEEcCHHHHHHHHHHHHhc-CCCEEEEeeeccC-----CCceEEEEEE
Confidence 5999999999999999999988777666532111 4579999999731 2469999987
No 12
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=99.06 E-value=4.8e-09 Score=100.55 Aligned_cols=152 Identities=14% Similarity=0.176 Sum_probs=86.0
Q ss_pred ceEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEEEeeecCcEEEEecceE
Q psy10924 29 NVWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIWVYHEGY 108 (322)
Q Consensus 29 ~~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvts~~pl~vy~y~~g~ 108 (322)
-.||+||..++.+.||.++++.+++.+.+...... ....+||+||+ |+-+. +-++... ..+.+ ..-..
T Consensus 166 ~P~iVKP~~~gsS~Gv~~v~~~~eL~~a~~~a~~~-~~~vlVEe~I~------G~E~s--v~vl~~~-~~~~~--~~~~~ 233 (343)
T PRK14568 166 YPVFVKPARSGSSFGVSKVNSADELDYAIESARQY-DSKVLIEEAVV------GSEVG--CAVLGNG-ADLVV--GEVDQ 233 (343)
T ss_pred CCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc-CCcEEEECCcC------CEEEE--EEEEcCC-CCcce--ecceE
Confidence 36999999999999999999999998877642211 45799999997 77544 4444321 01111 00011
Q ss_pred EEecCCCCCCCcccccccchhhhhhhhcccCCCCCCCCCCCccchHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHh
Q psy10924 109 VRFCSKPYSNILLDEARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIMKAMEESIVTIMRCA 188 (322)
Q Consensus 109 vR~s~~~y~~~~~d~~~HLTN~~iqk~~~~~~~~~~~~~~~~ws~~~~~~~L~~~~g~~~~~~~i~~~i~~~i~~~l~a~ 188 (322)
++....-|+.. +|.. +. .+...+ ... .. ...-.++..+|++.+..++++.
T Consensus 234 i~~~~~~~~~~-------------~k~~------~~--~g~~~~-~~~-------~P-a~l~~~~~~~i~~~a~~~~~~L 283 (343)
T PRK14568 234 IRLSHGFFRIH-------------QENE------PE--KGSENS-TII-------VP-ADISAEERSRVQETAKAIYRAL 283 (343)
T ss_pred EecCCCccchh-------------hhhc------cc--cCCCCe-eEE-------eC-CCCCHHHHHHHHHHHHHHHHHh
Confidence 11111111100 0000 00 000000 000 00 0011233445566665555543
Q ss_pred ccccccccCCCceeEEeeeEEeecCCceEEEEecCCCCCCCCCh
Q psy10924 189 QSINYIDLRKNSFQLFGADFLIHENYQPCLIEVNNGPGLSPTTS 232 (322)
Q Consensus 189 ~~~~~~~~~~~~Fel~G~DfllD~~~kpwLIEVN~~P~l~~~~~ 232 (322)
+|....++||++|+++++||+|||+.|+|+..+.
T Consensus 284 ----------g~~G~~rvDf~l~~~g~~~llEINt~Pg~t~~S~ 317 (343)
T PRK14568 284 ----------GCRGLARVDMFLQEDGTVVLNEVNTLPGFTSYSR 317 (343)
T ss_pred ----------CCCcEEEEEEEEeCCCCEEEEEeeCCCCCCccCH
Confidence 3558899999999999999999999999987653
No 13
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=99.04 E-value=8.3e-09 Score=98.55 Aligned_cols=145 Identities=17% Similarity=0.183 Sum_probs=87.2
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEEEeeecCcEEEEecceEE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIWVYHEGYV 109 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvts~~pl~vy~y~~g~v 109 (322)
.||+||..+..|.||.++++.+++.+.+...... ...++||+||+ |+ ++++-++.. ++ .+. --+.+
T Consensus 164 P~vVKP~~~gsS~Gv~~v~~~~el~~a~~~~~~~-~~~vlvEefI~------G~--E~~v~vl~~--~~-~~~--~~~ei 229 (333)
T PRK01966 164 PVFVKPANLGSSVGISKVKNEEELAAALDLAFEY-DRKVLVEQGIK------GR--EIECAVLGN--DP-KAS--VPGEI 229 (333)
T ss_pred CEEEEeCCCCCccCEEEECCHHHHHHHHHHHHhc-CCcEEEEcCcC------CE--EEEEEEECC--CC-eEc--ccEEE
Confidence 5999999999999999999999998877642211 46899999998 75 667777653 11 111 11111
Q ss_pred EecCCCCCCCcccccccchhhhhhhhcccCCCCCCCCCCCccchHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhc
Q psy10924 110 RFCSKPYSNILLDEARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIMKAMEESIVTIMRCAQ 189 (322)
Q Consensus 110 R~s~~~y~~~~~d~~~HLTN~~iqk~~~~~~~~~~~~~~~~ws~~~~~~~L~~~~g~~~~~~~i~~~i~~~i~~~l~a~~ 189 (322)
..+..-|+.. .+ |. .+.. .. .-....-.++..++++++..++++.
T Consensus 230 ~~~~~~~d~~--------------~k---y~------~~~~---~~--------~~Pa~l~~~~~~~i~~~a~~~~~aL- 274 (333)
T PRK01966 230 VKPDDFYDYE--------------AK---YL------DGSA---EL--------IIPADLSEELTEKIRELAIKAFKAL- 274 (333)
T ss_pred ecCCceEcHH--------------Hc---cC------CCCc---eE--------EeCCCCCHHHHHHHHHHHHHHHHHh-
Confidence 1111111100 00 00 0000 00 0000011233445555555555543
Q ss_pred cccccccCCCceeEEeeeEEeecCCceEEEEecCCCCCCCCCh
Q psy10924 190 SINYIDLRKNSFQLFGADFLIHENYQPCLIEVNNGPGLSPTTS 232 (322)
Q Consensus 190 ~~~~~~~~~~~Fel~G~DfllD~~~kpwLIEVN~~P~l~~~~~ 232 (322)
+|-...++||++|++++||+||||+.|+|...+-
T Consensus 275 ---------g~~G~~rvDf~~~~~g~~~vlEiNt~Pg~t~~s~ 308 (333)
T PRK01966 275 ---------GCSGLARVDFFLTEDGEIYLNEINTMPGFTPISM 308 (333)
T ss_pred ---------CCcceEEEEEEEcCCCCEEEEEeeCCCCCCcccH
Confidence 3447889999999999999999999999987643
No 14
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=99.04 E-value=1e-08 Score=96.32 Aligned_cols=164 Identities=18% Similarity=0.176 Sum_probs=92.8
Q ss_pred ceEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEEEeeecCcEEEEecceE
Q psy10924 29 NVWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIWVYHEGY 108 (322)
Q Consensus 29 ~~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvts~~pl~vy~y~~g~ 108 (322)
-.||+||..++.|+|+.++++.+++.+.+...... ...++||+||+ |+ ++++-|+...-+ ..++ --..
T Consensus 126 ~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~-~~~vlVEeyI~------G~--E~sv~vl~~~~~-~~vl--~~~e 193 (299)
T PRK14571 126 YPCVVKPRREGSSIGVFICESDEEFQHALKEDLPR-YGSVIVQEYIP------GR--EMTVSILETEKG-FEVL--PILE 193 (299)
T ss_pred CCEEEecCCCCCcCCEEEECCHHHHHHHHHHHHhh-CCcEEEEcccc------ce--EEEEEEEcCCCC-eeee--ceEE
Confidence 46999999999999999999999988776542111 45799999997 65 777877764311 1111 1000
Q ss_pred EEecCCCCCCCcccccccchhhhhhhhcccCCCCCCCCCCCccchHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHh
Q psy10924 109 VRFCSKPYSNILLDEARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIMKAMEESIVTIMRCA 188 (322)
Q Consensus 109 vR~s~~~y~~~~~d~~~HLTN~~iqk~~~~~~~~~~~~~~~~ws~~~~~~~L~~~~g~~~~~~~i~~~i~~~i~~~l~a~ 188 (322)
.+....-|+. . ++ +. .+.. . +. ... ..-.++..+|++++..++.+.
T Consensus 194 ~~~~~~~~~~---~-----~k---------~~------~g~~---~----~~---~p~-~l~~~~~~~i~~~a~~~~~~l 239 (299)
T PRK14571 194 LRPKRRFYDY---V-----AK---------YT------KGET---E----FI---LPA-PLNPEEERLVKETALKAFVEA 239 (299)
T ss_pred EecCCCcccc---c-----cc---------cC------CCCe---e----EE---eCC-CCCHHHHHHHHHHHHHHHHHh
Confidence 1100000000 0 00 00 0000 0 00 000 011233444555555555543
Q ss_pred ccccccccCCCceeEEeeeEEeecCCceEEEEecCCCCCCCCChhHHHH------HHHHHHHHhhch
Q psy10924 189 QSINYIDLRKNSFQLFGADFLIHENYQPCLIEVNNGPGLSPTTSIIAKK------TTELLTDMVKVV 249 (322)
Q Consensus 189 ~~~~~~~~~~~~Fel~G~DfllD~~~kpwLIEVN~~P~l~~~~~~~~~l------~~~li~d~l~lv 249 (322)
+|....++||+++ +++||+||||+.|++...+.+.... +.+|++.+++..
T Consensus 240 ----------g~~g~~rvD~~~~-~~~~~viEiN~~Pg~~~~s~~~~~~~~~G~~~~~li~~ii~~a 295 (299)
T PRK14571 240 ----------GCRGFGRVDGIFS-DGRFYFLEINTVPGLTELSDLPASAKAGGIEFEELVDIIIKSA 295 (299)
T ss_pred ----------CCCceEEEEEEEE-CCcEEEEEeeCCCCCCccCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3447889999997 5799999999999999765443221 345555554443
No 15
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.03 E-value=2e-09 Score=99.78 Aligned_cols=57 Identities=26% Similarity=0.428 Sum_probs=43.4
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCC---CCCCCceeEeeccccccccCCceeeEEEEEE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLK---NLTCPRCVVQKYIEKPLLIHGVKFDLRVWYV 92 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~---~~~~~~~IvQkYI~~PlLi~grKFDiR~yvl 92 (322)
.+|+||..|+.|+|+.++.+.+++.+.+.... ......+++|+||+.| ..|+|++++
T Consensus 124 P~vvKP~~g~~g~gv~~v~~~~~l~~~~~~~~~~~~~~~~~~ivQefI~~~------~~d~~v~vi 183 (280)
T TIGR02144 124 PVVLKPVIGSWGRLVALIRDKDELESLLEHKEVLGGSQHKLFYIQEYINKP------GRDIRVFVI 183 (280)
T ss_pred CEEEEECcCCCcCCEEEECCHHHHHHHHHHHHhhcCCcCCeEEEEcccCCC------CCceEEEEE
Confidence 48999999999999999999988876553211 0013579999999843 358999986
No 16
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=99.01 E-value=1.7e-08 Score=94.73 Aligned_cols=54 Identities=24% Similarity=0.372 Sum_probs=42.8
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYV 92 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvl 92 (322)
.+|+||..++.|+|+.++.+.+++.+.+...... ...++||+||+ |+ ++++.|+
T Consensus 135 P~ivKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~-~~~~lvEe~i~------G~--E~~v~vi 188 (304)
T PRK01372 135 PLVVKPAREGSSVGVSKVKEEDELQAALELAFKY-DDEVLVEKYIK------GR--ELTVAVL 188 (304)
T ss_pred CEEEeeCCCCCCCCEEEeCCHHHHHHHHHHHHhc-CCcEEEEcccC------CE--EEEEEEE
Confidence 5899999999999999999999988766542111 46799999997 65 6677665
No 17
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=98.98 E-value=1.9e-08 Score=94.83 Aligned_cols=145 Identities=17% Similarity=0.191 Sum_probs=85.7
Q ss_pred ceEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEEEeee-cCcEEEEecce
Q psy10924 29 NVWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNI-DKFKIWVYHEG 107 (322)
Q Consensus 29 ~~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvts~-~pl~vy~y~~g 107 (322)
-.+|+||..++.|+|+.++.+.+++.+.+...... ...++||+||+ |+ ++++.++.... -|..... .+.
T Consensus 147 ~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~~~-~~~~lvEe~i~------G~--e~~v~vi~~~~~~~~~~~~-~~~ 216 (315)
T TIGR01205 147 FPVIVKPAREGSSVGVSKVKSEEELQAALDEAFEY-DEEVLVEQFIK------GR--ELEVSILGNEEALPIIEIV-PEI 216 (315)
T ss_pred CCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHhc-CCcEEEEcCCC------CE--EEEEEEECCCCccceEEec-CCC
Confidence 35899999999999999999999988876542111 45799999995 65 77777775220 0111000 000
Q ss_pred EEEecCCCCCCCcccccccchhhhhhhhcccCCCCCCCCCCCccchHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH
Q psy10924 108 YVRFCSKPYSNILLDEARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIMKAMEESIVTIMRC 187 (322)
Q Consensus 108 ~vR~s~~~y~~~~~d~~~HLTN~~iqk~~~~~~~~~~~~~~~~ws~~~~~~~L~~~~g~~~~~~~i~~~i~~~i~~~l~a 187 (322)
.++ ..|.. ++. ..+.... ... ..-+.+.++|++.+..++++
T Consensus 217 -~~~--~~~~~-------------------~~~-----~~~~~~~-----------~p~-~l~~~~~~~i~~~a~~~~~~ 257 (315)
T TIGR01205 217 -EGF--YDYEA-------------------KYL-----DGSTEYV-----------IPA-PLDEELEEKIKELALKAYKA 257 (315)
T ss_pred -CCe--eCccc-------------------ccC-----CCCeeEE-----------eCC-CCCHHHHHHHHHHHHHHHHH
Confidence 000 00000 000 0000000 000 01123344566666666555
Q ss_pred hccccccccCCCceeEEeeeEEeecCCceEEEEecCCCCCCCCCh
Q psy10924 188 AQSINYIDLRKNSFQLFGADFLIHENYQPCLIEVNNGPGLSPTTS 232 (322)
Q Consensus 188 ~~~~~~~~~~~~~Fel~G~DfllD~~~kpwLIEVN~~P~l~~~~~ 232 (322)
.. +-..+++||++|.+++||+||||..|++...+.
T Consensus 258 lg----------~~G~~~vD~~~~~~g~~~viEvN~~pg~~~~s~ 292 (315)
T TIGR01205 258 LG----------CRGLARVDFFLDEEGEIYLNEINTIPGMTAISL 292 (315)
T ss_pred hC----------CCceEEEEEEEeCCCCEEEEEeeCCCCCCCccH
Confidence 43 236789999999999999999999999988653
No 18
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=98.96 E-value=2.5e-08 Score=93.67 Aligned_cols=142 Identities=11% Similarity=0.172 Sum_probs=84.4
Q ss_pred ceEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEEEeeecCcEEEEecceE
Q psy10924 29 NVWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIWVYHEGY 108 (322)
Q Consensus 29 ~~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvts~~pl~vy~y~~g~ 108 (322)
-.+|+||..++.|.|+.++++.+++.+.+..... ...++||+||+ |+ ++.+-|+-. ..+... .
T Consensus 131 ~P~vVKP~~ggss~Gv~~v~~~~eL~~a~~~~~~--~~~~lvEefI~------G~--E~tv~vl~~--~~~~~~-----~ 193 (296)
T PRK14569 131 FPVAVKPSSGGSSIATFKVKSIQELKHAYEEASK--YGEVMIEQWVT------GK--EITVAIVND--EVYSSV-----W 193 (296)
T ss_pred CCEEEEeCCCCCCcCeEEcCCHHHHHHHHHHHHh--cCCEEEEcccc------cE--EEEEEEECC--cCcceE-----E
Confidence 3589999999999999999999999887765321 34799999996 76 566666532 111110 0
Q ss_pred EEecCCCCCCCcccccccchhhhhhhhcccCCCCCCCCCCCccchHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHh
Q psy10924 109 VRFCSKPYSNILLDEARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIMKAMEESIVTIMRCA 188 (322)
Q Consensus 109 vR~s~~~y~~~~~d~~~HLTN~~iqk~~~~~~~~~~~~~~~~ws~~~~~~~L~~~~g~~~~~~~i~~~i~~~i~~~l~a~ 188 (322)
+.....-|+.. ..| . ....+. .. ....+++..+++++...++++.
T Consensus 194 i~~~~~~~~~~----~k~----------~---------~~~~~~-----------~P-~~l~~~~~~~i~~~a~~~~~~L 238 (296)
T PRK14569 194 IEPQNEFYDYE----SKY----------S---------GKSIYH-----------SP-SGLCEQKELEVRQLAKKAYDLL 238 (296)
T ss_pred EecCCCcCChh----hcc----------C---------CCcEEE-----------eC-CCCCHHHHHHHHHHHHHHHHHh
Confidence 11000001100 000 0 000000 00 0001122334555555555543
Q ss_pred ccccccccCCCceeEEeeeEEeecCCceEEEEecCCCCCCCCCh
Q psy10924 189 QSINYIDLRKNSFQLFGADFLIHENYQPCLIEVNNGPGLSPTTS 232 (322)
Q Consensus 189 ~~~~~~~~~~~~Fel~G~DfllD~~~kpwLIEVN~~P~l~~~~~ 232 (322)
+|-...++||++|++++||+||||+.|+|+.++.
T Consensus 239 ----------g~~G~~rvD~~~~~~g~~~vlEIN~~Pg~t~~s~ 272 (296)
T PRK14569 239 ----------GCSGHARVDFIYDDRGNFYIMEINSSPGMTDNSL 272 (296)
T ss_pred ----------CCceEEEEEEEEcCCCCEEEEEeeCCCCCCCcCH
Confidence 3458889999999999999999999999987653
No 19
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=98.95 E-value=3.3e-08 Score=95.60 Aligned_cols=170 Identities=16% Similarity=0.197 Sum_probs=100.3
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEEEeeecCcEEEEecceEE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIWVYHEGYV 109 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvts~~pl~vy~y~~g~v 109 (322)
..|+||..+..|.||.++++.+++.+.+...... ....+||+||+ || ++++-|+-. +...+ +..+-+
T Consensus 173 PviVKP~~~GsS~Gv~~v~~~~el~~al~~a~~~-~~~vlVEefI~------Gr--Ei~v~Vlg~--~~~~v--~~~~Ei 239 (364)
T PRK14570 173 PVIVKPAVLGSSIGINVAYNENQIEKCIEEAFKY-DLTVVIEKFIE------AR--EIECSVIGN--EQIKI--FTPGEI 239 (364)
T ss_pred CEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhC-CCCEEEECCcC------CE--EEEEEEECC--CCceE--eeeEEE
Confidence 5899999988899999999999988877653221 45699999998 76 777777732 11122 122222
Q ss_pred EecCCCCCCCcccccccchhhhhhhhcccCCCCCCCCCCCccchHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhc
Q psy10924 110 RFCSKPYSNILLDEARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIMKAMEESIVTIMRCAQ 189 (322)
Q Consensus 110 R~s~~~y~~~~~d~~~HLTN~~iqk~~~~~~~~~~~~~~~~ws~~~~~~~L~~~~g~~~~~~~i~~~i~~~i~~~l~a~~ 189 (322)
.+....| -+.+ .++. .+ +... .. . .-.....+++..+|+++...+.++.
T Consensus 240 ~~~~~~f--~dy~-----------~Ky~---~~---~~~~---~~-~-------~~Pa~l~~e~~~~i~~~A~~~~~aL- 288 (364)
T PRK14570 240 VVQDFIF--YDYD-----------AKYS---TI---PGNS---IV-F-------NIPAHLDTKHLLDIKEYAFLTYKNL- 288 (364)
T ss_pred EeCCCCc--cCHH-----------HhcC---CC---CCCc---eE-E-------ECCCCCCHHHHHHHHHHHHHHHHHh-
Confidence 2211110 0000 0000 00 0000 00 0 0000112344556666666666654
Q ss_pred cccccccCCCceeEEeeeEEeec-CCceEEEEecCCCCCCCCChhHHHH------HHHHHHHHhhchhcC
Q psy10924 190 SINYIDLRKNSFQLFGADFLIHE-NYQPCLIEVNNGPGLSPTTSIIAKK------TTELLTDMVKVVTAE 252 (322)
Q Consensus 190 ~~~~~~~~~~~Fel~G~DfllD~-~~kpwLIEVN~~P~l~~~~~~~~~l------~~~li~d~l~lv~d~ 252 (322)
+|-.+..+||++|+ +++||++|||+.|+|+..+.+.... ..+|++.+++..+.+
T Consensus 289 ---------g~~G~~RvDf~l~~~~g~~yvlEiNt~PG~t~~S~~p~~~~~~G~~~~~li~~li~~a~~r 349 (364)
T PRK14570 289 ---------ELRGMARIDFLIEKDTGLIYLNEINTIPGFTDISMFAKMCEHDGLQYKSLVDNLIDLAFQS 349 (364)
T ss_pred ---------CCcceEEEEEEEECCCCcEEEEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 45688999999996 5999999999999998865443221 466777777666643
No 20
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=98.90 E-value=1.7e-08 Score=95.91 Aligned_cols=151 Identities=17% Similarity=0.186 Sum_probs=91.4
Q ss_pred CCcceEEEeCCCC---CCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEEEeeecCcEEE
Q psy10924 26 GTHNVWVLKPVAN---CSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIW 102 (322)
Q Consensus 26 ~~~~~WIvKP~~~---s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvts~~pl~vy 102 (322)
+-+-.-|+||..| +.|+|+.++.+.+.+... ...+++|+||.+| | .|+|+||+-.. +
T Consensus 150 ~l~~P~V~KPl~g~Gss~gh~m~lv~~~~~L~~l--------~~p~~lQEfVnh~----g--~d~RVfVvGd~-----v- 209 (328)
T PLN02941 150 GLKFPLVAKPLVADGSAKSHKMSLAYDQEGLSKL--------EPPLVLQEFVNHG----G--VLFKVYVVGDY-----V- 209 (328)
T ss_pred cCCCCEEEeecccCCCccccceEEecCHHHHHhc--------CCcEEEEEecCCC----C--EEEEEEEECCE-----E-
Confidence 3344589999999 999999999998877652 3479999999876 5 49999999532 1
Q ss_pred EecceEEEecCCCCCCCc--cc----ccccchhhhhhhhcccCCCCCCCCCCCccchHHHHHHHHHhcCChhhHHHHHHH
Q psy10924 103 VYHEGYVRFCSKPYSNIL--LD----EARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIMKA 176 (322)
Q Consensus 103 ~y~~g~vR~s~~~y~~~~--~d----~~~HLTN~~iqk~~~~~~~~~~~~~~~~ws~~~~~~~L~~~~g~~~~~~~i~~~ 176 (322)
.+..|.|..++.... .. .+..++|.+....... +. .++ . ...+ -...+.
T Consensus 210 ---~~~~R~S~~n~~~~~~n~~~G~~~f~~vs~~~~~~~~~~---------~~--~~~-------~-~~~~---~p~~~~ 264 (328)
T PLN02941 210 ---KCVRRFSLPDVSEEELSSAEGVLPFPRVSNAAASADDAD---------NG--GLD-------P-EVAE---LPPRPF 264 (328)
T ss_pred ---EEEEecCCccccccccccccccccccccccccccccccc---------cc--ccc-------c-cccc---CCChHH
Confidence 235565555544211 11 1223333322111000 00 000 0 0000 001223
Q ss_pred HHHHHHHHHHHhccccccccCCCceeEEeeeEEeecC--CceEEEEecCCCCCCCCCh
Q psy10924 177 MEESIVTIMRCAQSINYIDLRKNSFQLFGADFLIHEN--YQPCLIEVNNGPGLSPTTS 232 (322)
Q Consensus 177 i~~~i~~~l~a~~~~~~~~~~~~~Fel~G~DfllD~~--~kpwLIEVN~~P~l~~~~~ 232 (322)
++++...+-++... +++|+|++.|.+ .+.++||||..|++..-..
T Consensus 265 l~~La~~~r~alGl-----------~l~GvDvI~~~~~~~~~~VidVN~fP~~k~~p~ 311 (328)
T PLN02941 265 LEDLARELRRRLGL-----------RLFNFDMIREHGTGDRYYVIDINYFPGYAKMPG 311 (328)
T ss_pred HHHHHHHHHHHhCC-----------ceEEEEEEeecCCCCceEEEEecCCCccccCCc
Confidence 55555555555544 899999999974 5789999999999986544
No 21
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=98.90 E-value=1.6e-08 Score=95.42 Aligned_cols=27 Identities=30% Similarity=0.678 Sum_probs=26.0
Q ss_pred eEEeeeEEeecCCceEEEEecCCCCCC
Q psy10924 202 QLFGADFLIHENYQPCLIEVNNGPGLS 228 (322)
Q Consensus 202 el~G~DfllD~~~kpwLIEVN~~P~l~ 228 (322)
.++|+||++|+++.||+||||+.|+|.
T Consensus 247 ~~~GvDii~~~~~g~~VlEVN~~Pg~t 273 (317)
T TIGR02291 247 GYMGVDMVLDKEEGPLVLELNARPGLA 273 (317)
T ss_pred CeEEEEEEEeCCCCEEEEEeCCCCCCC
Confidence 899999999988999999999999998
No 22
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=98.85 E-value=6.3e-08 Score=83.38 Aligned_cols=58 Identities=24% Similarity=0.413 Sum_probs=41.8
Q ss_pred ceEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCC---CCCCceeEeeccccccccCCceeeEEEEEE
Q psy10924 29 NVWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN---LTCPRCVVQKYIEKPLLIHGVKFDLRVWYV 92 (322)
Q Consensus 29 ~~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~---~~~~~~IvQkYI~~PlLi~grKFDiR~yvl 92 (322)
..||+||..++.|+|+.++++.+++.+++..-.. .....+|+|+||+ |.-|+++.++.
T Consensus 40 ~p~vvKp~~g~gs~gv~~~~~~~~l~~~~~~~~~~~~~~~~~~ivqe~i~------g~e~~~~~~~~ 100 (184)
T PF13535_consen 40 FPFVVKPVDGSGSRGVFIVHSPEELEAALAEIREDSPLGNGPVIVQEYIP------GDEYSVDGVVD 100 (184)
T ss_dssp SSEEEEESS-STTTT-EEESSHHHHHHHHHHHHHHHS-HSSSEEEEE---------SEEEEEEEEEE
T ss_pred CCEEEEcCccccCCCEEEeCCHHHHHHHHHHHHHhcccCCccEEEEEeee------eeeEEEEEEEE
Confidence 3599999999999999999999999888664211 0135799999999 77888887777
No 23
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=98.84 E-value=1.4e-07 Score=90.56 Aligned_cols=55 Identities=15% Similarity=0.174 Sum_probs=43.2
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEEE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVI 93 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlv 93 (322)
.+|+||..++.+.||.++++.+++.+.+...... ...+|||+||+ |+ ++++-|+.
T Consensus 173 PvvVKP~~ggsS~GV~~v~~~~el~~a~~~~~~~-~~~vlVEefI~------G~--E~sv~vi~ 227 (347)
T PRK14572 173 PQFLKPVEGGSSVSTYKITNAEQLMTLLALIFES-DSKVMSQSFLS------GT--EVSCGVLE 227 (347)
T ss_pred CEEEecCCCCCCCCEEEECCHHHHHHHHHHHHhc-CCCEEEEcCcc------cE--EEEEEEEe
Confidence 5999999999999999999999988776642111 46799999997 76 56666664
No 24
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=98.79 E-value=1.4e-07 Score=88.25 Aligned_cols=167 Identities=18% Similarity=0.226 Sum_probs=91.8
Q ss_pred ceEEEeCCCCCCCCCeEEeCChh---------HHHHHHhhCCCCCCCceeEeeccccc-cc---cCCceeeEEEEEEEee
Q psy10924 29 NVWVLKPVANCSGHGIRIYRQLE---------DIKRAIGTLKNLTCPRCVVQKYIEKP-LL---IHGVKFDLRVWYVITN 95 (322)
Q Consensus 29 ~~WIvKP~~~s~G~GI~~~~~~~---------~i~~~~~~~~~~~~~~~IvQkYI~~P-lL---i~grKFDiR~yvlvts 95 (322)
...++||+.|++|+||.++...+ .+...+.... ...||+|++|+.= .+ ....--+||+..++..
T Consensus 74 ~~~viKP~~G~~G~Gi~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~ 150 (285)
T PF14397_consen 74 DRFVIKPANGSGGKGILVIDRRDGSEINRDISALYAGLESLG---GKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDD 150 (285)
T ss_pred CcEEEEeCCCCCccCEEEEEeecCcccccchhHHHHHHHhcC---CccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeC
Confidence 57999999999999999987544 2323332211 1289999999832 11 1345569999999865
Q ss_pred ecCcEEEEecceEEEecCCCCCCCcccc---------cccchhhh-hhhhcccCCCCCCCCCCCccchHHHHHHHHHhcC
Q psy10924 96 IDKFKIWVYHEGYVRFCSKPYSNILLDE---------ARHLTNVR-IQKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMN 165 (322)
Q Consensus 96 ~~pl~vy~y~~g~vR~s~~~y~~~~~d~---------~~HLTN~~-iqk~~~~~~~~~~~~~~~~ws~~~~~~~L~~~~g 165 (322)
+ .+++ -.++.|++...-..+|+.. ..-++..+ .......+..||+. + -. | .|
T Consensus 151 -~--~~~~-~~a~lRlg~~~~~~DN~~~Ggi~~~ID~~tGl~~~~~~~~~~~~~~~HPdT--g--~~---~-------~g 212 (285)
T PF14397_consen 151 -G--EVEV-LMAMLRLGRGGSGVDNFHQGGIGVGIDLATGLGRFAGYDQDGERYEHHPDT--G--AP---F-------SG 212 (285)
T ss_pred -C--eeEE-EEEEEEeCCCCCcccccCCCCEEEEEecCCCccccccccCCCCEeeeCCCC--C--Cc---c-------CC
Confidence 2 2222 3467888744444444322 11122221 00010111112211 0 00 0 11
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhccccccccCCCceeEEeeeEEeecCCceEEEEecCC--CCCCCC
Q psy10924 166 LPRKWDMIMKAMEESIVTIMRCAQSINYIDLRKNSFQLFGADFLIHENYQPCLIEVNNG--PGLSPT 230 (322)
Q Consensus 166 ~~~~~~~i~~~i~~~i~~~l~a~~~~~~~~~~~~~Fel~G~DfllD~~~kpwLIEVN~~--P~l~~~ 230 (322)
. + .|...+++..+..+++. -..+..+|.|+.+|++| |.|||.|+. |++...
T Consensus 213 ~-----~-IP~w~~~~~l~~~~~~~-------~p~~~~iGWDvait~~G-p~llE~N~~~~pgl~~~ 265 (285)
T PF14397_consen 213 F-----Q-IPNWDEILELAKEAHRK-------FPGLGYIGWDVAITEDG-PVLLEGNARWDPGLMIQ 265 (285)
T ss_pred c-----c-CCCHHHHHHHHHHHHHH-------CCCCCeEEEEEEEcCCC-cEEEEeeCCCCCCcHhh
Confidence 0 1 12222223333333321 12368899999999999 999999999 998743
No 25
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=98.77 E-value=1.5e-08 Score=86.81 Aligned_cols=55 Identities=27% Similarity=0.568 Sum_probs=23.7
Q ss_pred hcCCcceEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEEE
Q psy10924 24 YDGTHNVWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVI 93 (322)
Q Consensus 24 ~~~~~~~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlv 93 (322)
.......||+||..|+.|.||+++++.++...... ...++|+||+ |..+- +.++.
T Consensus 27 ~~~~~~~~viKp~~G~Gg~~i~~~~~~~~~~~~~~-------~~~i~Qe~i~------G~~~S--v~~l~ 81 (161)
T PF02655_consen 27 PEPIDGPWVIKPRDGAGGEGIRIVDSEDELEEFLN-------KLRIVQEFIE------GEPYS--VSFLA 81 (161)
T ss_dssp SS--SSSEEEEESS-------B--SS--TTE--------------EEEE---------SEEEE--EEEEE
T ss_pred ccccCCcEEEEeCCCCCCCCeEEECCchhhccccc-------cceEEeeeeC------CEEeE--EEEEE
Confidence 34457789999999999999999999876654432 2339999998 76544 44444
No 26
>PRK05246 glutathione synthetase; Provisional
Probab=98.69 E-value=1.2e-07 Score=89.87 Aligned_cols=69 Identities=19% Similarity=0.178 Sum_probs=47.3
Q ss_pred eEEEeCCCCCCCCCeEEeCCh----hHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEEEeeecCcEEEEec
Q psy10924 30 VWVLKPVANCSGHGIRIYRQL----EDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIWVYH 105 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~----~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvts~~pl~vy~y~ 105 (322)
..|+||..|++|+||++++.. +.+.+.+.... ...+++|+||+.+- + -|+|++|+- . ++ -
T Consensus 156 ~vVlKP~~G~~G~gV~~i~~~~~~~~~~~~~l~~~~---~~~~lvQ~~I~~~~--~---~D~Rv~vv~----g-~v---v 219 (316)
T PRK05246 156 DIILKPLDGMGGAGIFRVKADDPNLGSILETLTEHG---REPVMAQRYLPEIK--E---GDKRILLVD----G-EP---V 219 (316)
T ss_pred CEEEEECCCCCccceEEEeCCCccHHHHHHHHHHcc---CCeEEEEeccccCC--C---CCEEEEEEC----C-EE---h
Confidence 589999999999999999543 23444444321 46899999998432 2 399999883 1 22 3
Q ss_pred c-eEEEecCC
Q psy10924 106 E-GYVRFCSK 114 (322)
Q Consensus 106 ~-g~vR~s~~ 114 (322)
. ++.|.+..
T Consensus 220 ~~a~~R~~~~ 229 (316)
T PRK05246 220 GYALARIPAG 229 (316)
T ss_pred hheeEecCCC
Confidence 4 67787654
No 27
>PLN02257 phosphoribosylamine--glycine ligase
Probab=98.66 E-value=7.5e-07 Score=88.14 Aligned_cols=169 Identities=14% Similarity=0.171 Sum_probs=89.3
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhC---CC--CCCCceeEeeccccccccCCceeeEEEEEEEeeecCcEEEEe
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTL---KN--LTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIWVY 104 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~---~~--~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvts~~pl~vy~y 104 (322)
..|+||..++.|+|+.++++.+++.+.+..- .. .....+|||+||+ |+ .+-+.+++.. -.++..
T Consensus 139 PvVVKp~~~~~GkGV~iv~~~~el~~a~~~~~~~~~fg~~~~~vlIEefi~------G~--E~Sv~~~~dG---~~~~pl 207 (434)
T PLN02257 139 PIVVKADGLAAGKGVVVAMTLEEAYEAVDSMLVKGAFGSAGSEVVVEEFLD------GE--EASFFALVDG---ENAIPL 207 (434)
T ss_pred CEEEEcCCCCCCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC------CC--EEEEEEEECC---CcEEEE
Confidence 4799999999999999999999887766431 00 0135799999998 66 4444444321 111110
Q ss_pred cceEEEecCCCCCCCcccccccchhhhhhhhcccCCCCCCCCCCCccchHHHHHHHHHhcCChhhHHHHHHHH-HHHHHH
Q psy10924 105 HEGYVRFCSKPYSNILLDEARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIMKAM-EESIVT 183 (322)
Q Consensus 105 ~~g~vR~s~~~y~~~~~d~~~HLTN~~iqk~~~~~~~~~~~~~~~~ws~~~~~~~L~~~~g~~~~~~~i~~~i-~~~i~~ 183 (322)
- .++-...-|+- |. .+ ..+.|..... .+...+++..++ +.++..
T Consensus 208 ~--~~~dhkr~~d~---d~------------------g~--ntggmg~~sp----------~p~l~~~~~~~i~~~i~~~ 252 (434)
T PLN02257 208 E--SAQDHKRVGDG---DT------------------GP--NTGGMGAYSP----------APVLTPELESKVMETIIYP 252 (434)
T ss_pred E--eeeecccccCC---CC------------------CC--CCCCCeeEec----------CCCCCHHHHHHHHHHHHHH
Confidence 0 00000000000 00 00 0111111100 000112233332 333333
Q ss_pred HHHHhccccccccCCCceeEEeeeEEee-cCCceEEEEecCCCCCCCCChhHHHHHHHHHHHHhhch
Q psy10924 184 IMRCAQSINYIDLRKNSFQLFGADFLIH-ENYQPCLIEVNNGPGLSPTTSIIAKKTTELLTDMVKVV 249 (322)
Q Consensus 184 ~l~a~~~~~~~~~~~~~Fel~G~DfllD-~~~kpwLIEVN~~P~l~~~~~~~~~l~~~li~d~l~lv 249 (322)
++.+... .......++.+|||++ +++.||+||+|+.|+..........+...+++-+++++
T Consensus 253 ~~~al~~-----~g~~y~Gvl~ve~ml~~~~g~p~vLE~N~R~Gdpe~~~~l~~l~~Dl~~~~~~~~ 314 (434)
T PLN02257 253 TVKGMAA-----EGCKFVGVLYAGLMIEKKSGLPKLLEYNVRFGDPECQVLMMRLESDLAQVLLAAC 314 (434)
T ss_pred HHHHHHH-----cCCCcEEEEEEEEEEEcCCCCEEEEEEECCCCCCchheEehhhcCCHHHHHHHHH
Confidence 4443332 1113468889999999 78899999999999986554444445555555444443
No 28
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=98.58 E-value=2.7e-06 Score=81.72 Aligned_cols=43 Identities=26% Similarity=0.390 Sum_probs=36.5
Q ss_pred eEEEeCCCCC-CCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccc
Q psy10924 30 VWVLKPVANC-SGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIE 75 (322)
Q Consensus 30 ~WIvKP~~~s-~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~ 75 (322)
.+|+||..++ .|+|+.++++.+++.+.+..-. ...+|+|+||+
T Consensus 135 P~vvKp~~~g~~g~Gv~~v~~~~el~~a~~~~~---~~~~lvEe~I~ 178 (352)
T TIGR01161 135 PVVLKARTGGYDGRGQYRIRNEADLPQAAKELG---DRECIVEEFVP 178 (352)
T ss_pred CEEEEeCCCCCCCCCEEEECCHHHHHHHHHhcC---CCcEEEEecCC
Confidence 5999999975 8999999999999988776532 45899999997
No 29
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=98.56 E-value=1.6e-06 Score=88.22 Aligned_cols=54 Identities=33% Similarity=0.662 Sum_probs=43.2
Q ss_pred EEEeCCCCCCCCCeEE-eCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEEE
Q psy10924 31 WVLKPVANCSGHGIRI-YRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVI 93 (322)
Q Consensus 31 WIvKP~~~s~G~GI~~-~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlv 93 (322)
-|+||..|++|+||.+ +++.+++.+.+...... ...++||+||+ |+ |+|+.|+-
T Consensus 334 vVVKP~~G~~G~Gv~v~v~~~~eL~~a~~~a~~~-~~~vlvEe~i~------G~--d~Rv~Vig 388 (547)
T TIGR03103 334 VVVKPVRGEQGKGISVDVRTPDDLEAAIAKARQF-CDRVLLERYVP------GE--DLRLVVID 388 (547)
T ss_pred EEEEECCCCCCcCeEEecCCHHHHHHHHHHHHhc-CCcEEEEEecc------CC--eEEEEEEC
Confidence 6999999999999997 89998888776643221 45799999997 43 99997773
No 30
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=98.54 E-value=1.2e-06 Score=86.53 Aligned_cols=46 Identities=22% Similarity=0.422 Sum_probs=36.3
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhC---CCC--CCCceeEeeccc
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTL---KNL--TCPRCVVQKYIE 75 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~---~~~--~~~~~IvQkYI~ 75 (322)
..|+||..++.|+|+.++.+.+++.+.+..- ... ....+|||+||+
T Consensus 145 PvVVKp~~~~~gkGV~vv~~~eel~~a~~~~~~~~~~g~~~~~vlIEEfl~ 195 (426)
T PRK13789 145 PIVIKADGLAAGKGVTVATEKKMAKRALKEIFKDKKFGQSGNQVVIEEFME 195 (426)
T ss_pred CEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECcC
Confidence 5899999999999999999999888766541 100 124799999998
No 31
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=98.50 E-value=2.8e-06 Score=90.32 Aligned_cols=170 Identities=12% Similarity=0.038 Sum_probs=95.7
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEEEeeecCcEEEEecceEE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIWVYHEGYV 109 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvts~~pl~vy~y~~g~v 109 (322)
.-|+||..+..+.||.++++.+++.+.+...... ....+|++||.. ||-+ .+-|+..... .+.-....-
T Consensus 612 P~iVKP~~~GsS~Gv~~v~~~~el~~a~~~a~~~-~~~vlVEe~i~~-----grEi--~v~vl~~~~~---~~~~~~~~e 680 (809)
T PRK14573 612 PMFVKTAHLGSSIGVFEVHNVEELRDKISEAFLY-DTDVFVEESRLG-----SREI--EVSCLGDGSS---AYVIAGPHE 680 (809)
T ss_pred CEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHhc-CCcEEEEeccCC-----CEEE--EEEEEeCCCC---ceEeccceE
Confidence 4799999999999999999999998877642111 457899998862 5644 4444442211 110000000
Q ss_pred EecCCC-CCCCcccccccchhhhhhhhcccCCCCCCCCCCCccchHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHh
Q psy10924 110 RFCSKP-YSNILLDEARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIMKAMEESIVTIMRCA 188 (322)
Q Consensus 110 R~s~~~-y~~~~~d~~~HLTN~~iqk~~~~~~~~~~~~~~~~ws~~~~~~~L~~~~g~~~~~~~i~~~i~~~i~~~l~a~ 188 (322)
+.+... |+-. .+ |.. .+.. ..... .. ...-+++..+|+++...+.++.
T Consensus 681 ~~~~~~f~dy~--------------~K---y~~-----~g~~-~~~~~-------~P-a~l~~~~~~~i~~~a~~~~~aL 729 (809)
T PRK14573 681 RRGSGGFIDYQ--------------EK---YGL-----SGKS-SAQIV-------FD-LDLSKESQEQVLELAERIYRLL 729 (809)
T ss_pred EccCCCeeCch--------------hc---ccC-----CCCC-ceEEe-------cC-CCCCHHHHHHHHHHHHHHHHHh
Confidence 111000 0000 00 000 0000 00000 00 0112344555666666666554
Q ss_pred ccccccccCCCceeEEeeeEEeecCCceEEEEecCCCCCCCCChhHHHH------HHHHHHHHhhchhc
Q psy10924 189 QSINYIDLRKNSFQLFGADFLIHENYQPCLIEVNNGPGLSPTTSIIAKK------TTELLTDMVKVVTA 251 (322)
Q Consensus 189 ~~~~~~~~~~~~Fel~G~DfllD~~~kpwLIEVN~~P~l~~~~~~~~~l------~~~li~d~l~lv~d 251 (322)
+|-.+..+||++|+++++|++|||+.|+|...+...... ..+|++.+++..+.
T Consensus 730 ----------g~~G~~riDf~v~~~g~~yv~EiNt~PG~t~~s~~p~~~~~~G~~~~~li~~ii~~a~~ 788 (809)
T PRK14573 730 ----------QGKGSCRIDFFLDEEGNFWLSEMNPIPGMTEASPFLTAFVRKGWTYEQIVHQLIIDGLH 788 (809)
T ss_pred ----------CCceEEEEEEEEcCCCCEEEEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 367899999999999999999999999998865443221 45666666665554
No 32
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=98.48 E-value=3.2e-06 Score=80.02 Aligned_cols=54 Identities=19% Similarity=0.345 Sum_probs=45.1
Q ss_pred cceEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEE
Q psy10924 28 HNVWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYV 92 (322)
Q Consensus 28 ~~~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvl 92 (322)
.-.+|+||..++.|+|+.++++.+++.+++.. ...++||+||. |+-+++.+++-
T Consensus 148 ~~P~viKP~~g~~s~gv~~v~~~~el~~~~~~-----~~~~lvqeyi~------G~e~~v~~~~~ 201 (326)
T PRK12767 148 QFPLFVKPRDGSASIGVFKVNDKEELEFLLEY-----VPNLIIQEFIE------GQEYTVDVLCD 201 (326)
T ss_pred CCCEEEEeCCCCCccCeEEeCCHHHHHHHHHh-----CCCeEEEeccC------CceEEEEEEEc
Confidence 34699999999999999999999999988875 34899999996 77777666553
No 33
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=98.44 E-value=4.8e-06 Score=81.03 Aligned_cols=56 Identities=23% Similarity=0.350 Sum_probs=43.8
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCC-CCCCCceeEeeccccccccCCceeeEEEEE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLK-NLTCPRCVVQKYIEKPLLIHGVKFDLRVWY 91 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~-~~~~~~~IvQkYI~~PlLi~grKFDiR~yv 91 (322)
..|+||..++.|+|+.++.+.+++.+.+..-. ......+|||+||+ |+-+.+.+++
T Consensus 104 PvVvKp~~~~~gkGV~iv~~~~el~~a~~~~~~~~~~~~vlvEe~i~------G~E~sv~~~~ 160 (379)
T PRK13790 104 PVVVKKDGLAAGKGVIIADTIEAARSAIEIMYGDEEEGTVVFETFLE------GEEFSLMTFV 160 (379)
T ss_pred CEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhcCCCCeEEEEEccc------CceEEEEEEe
Confidence 58999999999999999999999887775411 11135799999998 7777776654
No 34
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=98.44 E-value=1.2e-05 Score=79.11 Aligned_cols=54 Identities=20% Similarity=0.348 Sum_probs=41.0
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCC-----CCCCceeEeeccccccccCCceeeEEE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-----LTCPRCVVQKYIEKPLLIHGVKFDLRV 89 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~-----~~~~~~IvQkYI~~PlLi~grKFDiR~ 89 (322)
..|+||..++.|+|+.++.+.+++.+.+..-.. .....++||+||+ |+-|.+-+
T Consensus 139 P~VvKP~~~~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~------G~E~sv~~ 197 (420)
T PRK00885 139 PIVVKADGLAAGKGVVVAMTLEEAKAAVDDMLAGNKFGDAGARVVIEEFLD------GEEASFFA 197 (420)
T ss_pred CEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHhhcccccCCCCeEEEEEccC------CcEEEEEE
Confidence 489999999999999999999988877654210 0135799999997 76555443
No 35
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=98.44 E-value=8.8e-06 Score=78.92 Aligned_cols=44 Identities=25% Similarity=0.420 Sum_probs=37.2
Q ss_pred ceEEEeCCCC-CCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccc
Q psy10924 29 NVWVLKPVAN-CSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIE 75 (322)
Q Consensus 29 ~~WIvKP~~~-s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~ 75 (322)
-.+|+||..+ +.|+|+.++++.+++.+....-. ...+|||+||+
T Consensus 136 ~P~vlKp~~~g~~g~Gv~~v~~~~el~~a~~~~~---~~~~ivEe~I~ 180 (372)
T PRK06019 136 LPAVLKTRRGGYDGKGQWVIRSAEDLEAAWALLG---SVPCILEEFVP 180 (372)
T ss_pred CcEEEEeCCCCcCCCCeEEECCHHHHHHHHHhcC---CCCEEEEecCC
Confidence 3599999985 68999999999999988877532 46899999997
No 36
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=98.40 E-value=4.9e-06 Score=86.64 Aligned_cols=55 Identities=24% Similarity=0.492 Sum_probs=41.5
Q ss_pred eEEEeCCCCCCCCCeEEeCC---hhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEEE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQ---LEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVI 93 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~---~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlv 93 (322)
.-||||..++.|+||.++.+ .+++.+.+...... ....|||+||+ |+ |+|+.|+-
T Consensus 513 PVVVKP~~g~~G~GVsi~~~~~~~eel~~Al~~A~~~-~~~VLVEefI~------G~--EyRv~VIg 570 (737)
T TIGR01435 513 AIVVKPKSTNYGLGITIFKNGFTLEDFQEALNIAFSE-DSSVIIEEFLP------GT--EYRFFVLN 570 (737)
T ss_pred CEEEeeCCCCCcCCeEEecCcCCHHHHHHHHHHHHhc-CCeEEEEeccc------CC--EEEEEEEC
Confidence 36999999999999999876 56665554421111 45799999997 75 99998884
No 37
>PRK06524 biotin carboxylase-like protein; Validated
Probab=98.40 E-value=1.2e-05 Score=79.91 Aligned_cols=142 Identities=17% Similarity=0.090 Sum_probs=82.4
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEEEeeecCcEEEEecc--e
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIWVYHE--G 107 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvts~~pl~vy~y~~--g 107 (322)
.-++||..|+.|+|+.++++.+++.+....... ....+||+||. |+-+.+=+++.- .+........+ |
T Consensus 183 PvVVKP~~GGSS~GV~~Vkn~eELe~a~~~~~~--~~~viVEe~I~------GrEitVev~vd~--dG~Vv~~~~~e~vg 252 (493)
T PRK06524 183 DLVVQTPYGDSGSTTFFVRGQRDWDKYAGGIVG--QPEIKVMKRIR------NVEVCIEACVTR--HGTVIGPAMTSLVG 252 (493)
T ss_pred cEEEEECCCCCCcCEEEeCCHHHHHHHHHHhcC--CCCEEEEeccC------cEEEEEEEEEeC--CCCEEecccccccc
Confidence 479999999999999999999999887765321 35689999986 776655444321 11111000000 0
Q ss_pred EEEecCCCCCCCcccccccchhhhhhhhcccCCCCCCCCCCCccchHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH
Q psy10924 108 YVRFCSKPYSNILLDEARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIMKAMEESIVTIMRC 187 (322)
Q Consensus 108 ~vR~s~~~y~~~~~d~~~HLTN~~iqk~~~~~~~~~~~~~~~~ws~~~~~~~L~~~~g~~~~~~~i~~~i~~~i~~~l~a 187 (322)
..++. +|... |.... ......-..+..++++++..+..+
T Consensus 253 ~~Ei~--~yr~G-------------------------------~~~~~--------i~PA~L~~ei~eeIqeiA~ka~~a 291 (493)
T PRK06524 253 YPELT--PYRGG-------------------------------WCGND--------IWPGALPPAQTRKAREMVRKLGDV 291 (493)
T ss_pred ceEEE--EccCC-------------------------------eEEEE--------EccCCCCHHHHHHHHHHHHHHHHH
Confidence 00110 01000 00000 000001123344555666666555
Q ss_pred hccccccccCCCceeEEeeeEEeec-CCceEEEEecCCCCCCC
Q psy10924 188 AQSINYIDLRKNSFQLFGADFLIHE-NYQPCLIEVNNGPGLSP 229 (322)
Q Consensus 188 ~~~~~~~~~~~~~Fel~G~DfllD~-~~kpwLIEVN~~P~l~~ 229 (322)
... .+|..++++||++|. ++++|++|||..|+=..
T Consensus 292 L~~-------lG~~Gv~rVDFfvd~ddgevYfnEINPR~~G~t 327 (493)
T PRK06524 292 LSR-------EGYRGYFEVDLLHDLDADELYLGEVNPRLSGAS 327 (493)
T ss_pred hhc-------CCCEEEEEEEEEEECCCCeEEEEEEeCCccccc
Confidence 421 257899999999995 69999999999987743
No 38
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=98.38 E-value=1.2e-05 Score=77.90 Aligned_cols=47 Identities=32% Similarity=0.475 Sum_probs=37.3
Q ss_pred ceEEEeCCCCCCCCCeEEeCChhHHHHHHhhCC---CCCCCceeEeeccc
Q psy10924 29 NVWVLKPVANCSGHGIRIYRQLEDIKRAIGTLK---NLTCPRCVVQKYIE 75 (322)
Q Consensus 29 ~~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~---~~~~~~~IvQkYI~ 75 (322)
-.+|+||..++.|+|+.++++.+++.+.+.... ......+|||+||+
T Consensus 137 ~P~VvKP~~g~~s~gv~~v~~~~el~~~~~~~~~~~~~~~~~~ivEe~i~ 186 (380)
T TIGR01142 137 YPCVVKPVMSSSGKGQSVVRGPEDIEKAWEYAQEGARGGAGRVIVEEFID 186 (380)
T ss_pred CCEEEEECCCcCCCCeEEECCHHHHHHHHHHHHhhccCCCCCEEEEEecC
Confidence 358999999999999999999999887765421 00135799999997
No 39
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=98.37 E-value=9.9e-06 Score=80.45 Aligned_cols=47 Identities=23% Similarity=0.468 Sum_probs=37.4
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhC-----CCCCCCceeEeecccc
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTL-----KNLTCPRCVVQKYIEK 76 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~-----~~~~~~~~IvQkYI~~ 76 (322)
.+|+||..++.|+|+.++++.+++.+.+... .......++||+||+.
T Consensus 154 PvvvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g 205 (449)
T TIGR00514 154 PVIIKATAGGGGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIEN 205 (449)
T ss_pred CEEEEeCCCCCCCccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 4899999999999999999999988876531 0111457999999984
No 40
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=98.36 E-value=3.4e-06 Score=73.18 Aligned_cols=68 Identities=22% Similarity=0.293 Sum_probs=40.0
Q ss_pred EEEeCCCCCCCCCeEEeCC----hhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEEEeeecCcEEEEecc
Q psy10924 31 WVLKPVANCSGHGIRIYRQ----LEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIWVYHE 106 (322)
Q Consensus 31 WIvKP~~~s~G~GI~~~~~----~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvts~~pl~vy~y~~ 106 (322)
||+||..|..|+|++.++. .+.+.+.+.... ...+++|+||+. . -+| |.|+.++=.. + .+
T Consensus 34 ~VlKPl~g~gG~gV~~i~~~~~n~~~i~e~~~~~~---~~~~mvQ~flp~-i-~~G---DkRii~~nG~------~--~~ 97 (173)
T PF02955_consen 34 IVLKPLDGMGGRGVFRISRDDPNLNSILETLTKNG---ERPVMVQPFLPE-I-KEG---DKRIILFNGE------P--SH 97 (173)
T ss_dssp EEEEESS--TTTT-EEE-TT-TTHHHHHHHHTTTT---TS-EEEEE--GG-G-GG----EEEEEEETTE------E---S
T ss_pred EEEEECCCCCCcCEEEEcCCCCCHHHHHHHHHhcC---CccEEEEecccc-c-cCC---CEEEEEECCE------E--hH
Confidence 9999999999999999987 344555443322 467999999986 2 366 8898888322 1 33
Q ss_pred eEEEecCC
Q psy10924 107 GYVRFCSK 114 (322)
Q Consensus 107 g~vR~s~~ 114 (322)
++.|....
T Consensus 98 av~R~P~~ 105 (173)
T PF02955_consen 98 AVRRIPAK 105 (173)
T ss_dssp EEEEE--S
T ss_pred HeecCCCC
Confidence 67777654
No 41
>PRK12458 glutathione synthetase; Provisional
Probab=98.35 E-value=3.3e-06 Score=80.91 Aligned_cols=57 Identities=16% Similarity=0.328 Sum_probs=40.0
Q ss_pred eEEEeCCCCCCCCCeEEeCChhH--HHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEEE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLED--IKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVI 93 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~--i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlv 93 (322)
..|+||..|+.|+||+++.+.+. +...++.... ...+++|+||+.+ ...|+|++|+-
T Consensus 164 pvVvKPl~G~gG~gV~~v~~~~~~~~~~ile~~~~--~~~~ivQeyI~~~-----~~gDiRv~vv~ 222 (338)
T PRK12458 164 KMILKPLQGSGGQGVFLIEKSAQSNLNQILEFYSG--DGYVIAQEYLPGA-----EEGDVRILLLN 222 (338)
T ss_pred eEEEEECCCCCccCeEEEecCChhhHHHHHHHHhh--CCCEEEEEcccCC-----CCCCEEEEEEC
Confidence 38999999999999999975542 3233321111 3579999999843 23699999753
No 42
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=98.35 E-value=4e-06 Score=79.49 Aligned_cols=56 Identities=21% Similarity=0.250 Sum_probs=39.6
Q ss_pred eEEEeCCCCCCCCCeEEeCChh----HHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEEE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLE----DIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVI 93 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~----~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlv 93 (322)
-.|+||..|++|+|++.++..+ .+.+.+.... ...+++|+||+.+ ..-|+|++|+-
T Consensus 155 ~vVvKPl~G~~G~gv~~v~~~~~~~~~~~~~~~~~~---~~~~~vQ~yI~~~-----~~~D~Rv~vv~ 214 (312)
T TIGR01380 155 DIVLKPLDGMGGEGIFRLDPGDPNFNSILETMTQRG---REPVMAQRYLPEI-----KEGDKRILLID 214 (312)
T ss_pred CEEEEECCCCCCceEEEEcCCCccHHHHHHHHHhcc---CCcEEEEeccccc-----cCCCEEEEEEC
Confidence 4899999999999999887532 2333333211 4579999999842 12499999873
No 43
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=98.34 E-value=1.6e-05 Score=78.22 Aligned_cols=52 Identities=19% Similarity=0.371 Sum_probs=39.1
Q ss_pred EEEeCCCCCCCCCeEEeCChhHHHHHHhhCCC----CCCCceeEeeccccccccCCceeeEE
Q psy10924 31 WVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN----LTCPRCVVQKYIEKPLLIHGVKFDLR 88 (322)
Q Consensus 31 WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~----~~~~~~IvQkYI~~PlLi~grKFDiR 88 (322)
+|+||..++.|+|+.++++.+++.+.+..-.. .....++||+||+ |.-|.+-
T Consensus 143 ~VvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~g~~~~~~lvEe~i~------G~E~sv~ 198 (423)
T TIGR00877 143 IVVKADGLAAGKGVIVAKTNEEAIKAVEEILEQKFGDAGERVVIEEFLD------GEEVSLL 198 (423)
T ss_pred EEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHhcCCCCCeEEEEECcc------CceEEEE
Confidence 99999999999999999999988776543110 0135799999997 6555443
No 44
>PRK14016 cyanophycin synthetase; Provisional
Probab=98.33 E-value=6e-06 Score=86.69 Aligned_cols=54 Identities=28% Similarity=0.463 Sum_probs=43.0
Q ss_pred eEEEeCCCCCCCCCeEE-eCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEE
Q psy10924 30 VWVLKPVANCSGHGIRI-YRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYV 92 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~-~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvl 92 (322)
.-|+||..|+.|+|+.+ +++.+++.+.+...... ...++||+||+ | .|+|++|+
T Consensus 251 PvVVKP~~G~~G~GV~~~v~~~~el~~a~~~a~~~-~~~viVEe~I~------G--~d~Rv~Vv 305 (727)
T PRK14016 251 PVVVKPLDGNHGRGVTVNITTREEIEAAYAVASKE-SSDVIVERYIP------G--KDHRLLVV 305 (727)
T ss_pred CEEEEECCCCCCCceEEecCCHHHHHHHHHHHHHh-CCeEEEEEecC------C--ceEEEEEE
Confidence 47999999999999998 89998888776542211 46799999997 4 38998775
No 45
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=98.30 E-value=7.1e-06 Score=77.85 Aligned_cols=144 Identities=18% Similarity=0.204 Sum_probs=89.9
Q ss_pred cCCcceEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEE---------Eee
Q psy10924 25 DGTHNVWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYV---------ITN 95 (322)
Q Consensus 25 ~~~~~~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvl---------vts 95 (322)
.+.+-..+|||+..-..-|+..++...+.....+.-.. ..+..++++|+. ||++.+.+.-- ..=
T Consensus 139 ~~l~~p~~Vkp~~~gSSvg~~~v~~~~d~~~~~e~a~~-~d~~vl~e~~~~------~rei~v~vl~~~~~~~~l~~~eI 211 (317)
T COG1181 139 EGLGFPLFVKPAREGSSVGRSPVNVEGDLQSALELAFK-YDRDVLREQGIT------GREIEVGVLGNDYEEQALPLGEI 211 (317)
T ss_pred cccCCCEEEEcCCccceeeEEEeeeccchHHHHHHHHH-hCCceeeccCCC------cceEEEEecCCcccceecCceEE
Confidence 34555689999998778899999888777664432111 167889999997 77666544322 110
Q ss_pred ecC-cEEEEecceEEEecCCCCCCCcccccccchhhhhhhhcccCCCCCCCCCCCccchHHHHHHHHHhcCChhhHHHHH
Q psy10924 96 IDK-FKIWVYHEGYVRFCSKPYSNILLDEARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIM 174 (322)
Q Consensus 96 ~~p-l~vy~y~~g~vR~s~~~y~~~~~d~~~HLTN~~iqk~~~~~~~~~~~~~~~~ws~~~~~~~L~~~~g~~~~~~~i~ 174 (322)
..+ -.+|.|..-|+-.....+.. .....+++.
T Consensus 212 ~~~~~~fydye~Ky~~~gg~~~~~-----------------------------------------------pa~lt~~~~ 244 (317)
T COG1181 212 PPKGEEFYDYEAKYLSTGGAQYDI-----------------------------------------------PAGLTDEIH 244 (317)
T ss_pred ecCCCeEEeeeccccCCCCceeeC-----------------------------------------------CCCCCHHHH
Confidence 001 23333332222211110000 001234566
Q ss_pred HHHHHHHHHHHHHhccccccccCCCceeEEeeeEEeec-CCceEEEEecCCCCCCCCCh
Q psy10924 175 KAMEESIVTIMRCAQSINYIDLRKNSFQLFGADFLIHE-NYQPCLIEVNNGPGLSPTTS 232 (322)
Q Consensus 175 ~~i~~~i~~~l~a~~~~~~~~~~~~~Fel~G~DfllD~-~~kpwLIEVN~~P~l~~~~~ 232 (322)
++++++...+.++. +|-.+-|+||++|+ .+++||+|||++|+|...+-
T Consensus 245 ~~i~~lA~~a~~al----------g~~g~~rvDf~~~~~~g~~~l~EvNt~PG~t~~sl 293 (317)
T COG1181 245 EEIKELALRAYKAL----------GCLGLARVDFFVDDDEGEFVLLEVNTNPGMTAMSL 293 (317)
T ss_pred HHHHHHHHHHHHhc----------CCCceEEEEEEEECCCCCEEEEEEeCCCCCccccc
Confidence 77777777777665 35688899999999 99999999999999876543
No 46
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=98.29 E-value=1.7e-05 Score=78.57 Aligned_cols=46 Identities=22% Similarity=0.344 Sum_probs=36.9
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhC-----CCCCCCceeEeeccc
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTL-----KNLTCPRCVVQKYIE 75 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~-----~~~~~~~~IvQkYI~ 75 (322)
.+|+||..++.|+|+.++++.+++.+.+... .......++||+||+
T Consensus 154 P~VvKP~~g~gs~Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~ 204 (450)
T PRK06111 154 PVMLKASAGGGGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIE 204 (450)
T ss_pred CEEEEeCCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccC
Confidence 5999999999999999999999988776531 001145799999998
No 47
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=98.28 E-value=2.1e-05 Score=75.88 Aligned_cols=151 Identities=15% Similarity=0.244 Sum_probs=87.1
Q ss_pred ceEEEeCCCCCCCCCeEEeCChhHHHHHHhhCC---CC-CCCceeEeeccccccccCCceeeEEEEEEEeeecCcEE---
Q psy10924 29 NVWVLKPVANCSGHGIRIYRQLEDIKRAIGTLK---NL-TCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKI--- 101 (322)
Q Consensus 29 ~~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~---~~-~~~~~IvQkYI~~PlLi~grKFDiR~yvlvts~~pl~v--- 101 (322)
...|+||..++.|+|++++++.+++.+.++.-. .. ....++||+||+ |.-|.+=+|+-.-. +-+.+
T Consensus 150 ~PvIVKp~~g~ggkGv~i~~s~~El~~~~~~l~~~~~~~~~~~~iIEEfI~------G~e~sv~~f~s~~~-~~~e~l~i 222 (358)
T PRK13278 150 RPVIVKLPGAKGGRGYFIAKSPEEFKEKIDKLIERGLITEVEEAIIQEYVV------GVPYYFHYFYSPIK-NRLELLGI 222 (358)
T ss_pred CCEEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHhccccCCCCeEEEEecCC------CcEEEEEEEEeccC-CeEEEEee
Confidence 357999999999999999999999887765411 00 146899999998 87777776553100 11111
Q ss_pred ---EEe-cceEEEecCCCCCCCcccccccchhhhhhhhcccCCCCCCCC-CCCccchHHHHHHHHHhcCChhhHHHHHHH
Q psy10924 102 ---WVY-HEGYVRFCSKPYSNILLDEARHLTNVRIQKQYRNVRDPPQLP-AELMWDFKQLRDYFTKNMNLPRKWDMIMKA 176 (322)
Q Consensus 102 ---y~y-~~g~vR~s~~~y~~~~~d~~~HLTN~~iqk~~~~~~~~~~~~-~~~~ws~~~~~~~L~~~~g~~~~~~~i~~~ 176 (322)
|.- .+|..|+....+..... ++.++ .|+ |.. ...+.+.++
T Consensus 223 d~r~~~~~d~~~r~p~~~~~~~~~--------------------~p~~v~~Gn-~P~--------------~~resll~~ 267 (358)
T PRK13278 223 DRRYESNIDGLVRIPAKDQLELGI--------------------DPTYVVVGN-IPV--------------VLRESLLPQ 267 (358)
T ss_pred ceeeeecccceeeccchhhhhccc--------------------CCceeEecc-eec--------------cchHhHHHH
Confidence 110 22444433222110000 01000 111 110 112334555
Q ss_pred HHHHHHHHHHHhccccccccCCCceeEEeeeEEeecCCceEEEEecCCC
Q psy10924 177 MEESIVTIMRCAQSINYIDLRKNSFQLFGADFLIHENYQPCLIEVNNGP 225 (322)
Q Consensus 177 i~~~i~~~l~a~~~~~~~~~~~~~Fel~G~DfllD~~~kpwLIEVN~~P 225 (322)
+.+.....++++.. .+. .+...-+.+|+++++++++|++|||+.+
T Consensus 268 v~~~~~~~v~a~~~--~~~--~~~~Gp~~ie~~~~~d~~~~V~Eis~R~ 312 (358)
T PRK13278 268 VFEYGERFVETSKE--LVP--PGMIGPFCLESVVTDNLEIVVFEISARI 312 (358)
T ss_pred HHHHHHHHHHHHHH--hcC--ccccCCceEEEEEcCCCCEEEEEEeCcc
Confidence 55566666666543 221 1445777899999999999999998876
No 48
>PRK07206 hypothetical protein; Provisional
Probab=98.28 E-value=1.5e-05 Score=78.18 Aligned_cols=55 Identities=24% Similarity=0.385 Sum_probs=42.7
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCC------CCCCceeEeeccccccccCCceeeEEEE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN------LTCPRCVVQKYIEKPLLIHGVKFDLRVW 90 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~------~~~~~~IvQkYI~~PlLi~grKFDiR~y 90 (322)
.+|+||..|+.|+|+.++++.+++.+.+..... .....++||+||+ |.-|.+-++
T Consensus 148 P~VvKP~~g~gs~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~i~------G~E~sv~~~ 208 (416)
T PRK07206 148 PVVIKPLESAGSDGVFICPAKGDWKHAFNAILGKANKLGLVNETVLVQEYLI------GTEYVVNFV 208 (416)
T ss_pred CEEEeCCCCCCCCCEEEeCCHHHHHHHHHHHHhccccCCCCCCeEEEEEccc------cEEEEEEEE
Confidence 689999999999999999999998877654110 1135799999998 777776554
No 49
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=98.26 E-value=1.2e-05 Score=87.68 Aligned_cols=138 Identities=20% Similarity=0.281 Sum_probs=82.2
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCC-----CCCCCceeEeeccccccccCCceeeEEEEEEEeeecCcEEEEe
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLK-----NLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIWVY 104 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~-----~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvts~~pl~vy~y 104 (322)
.+|+||..|+.|+|+.++++.+++...+.... ......++||+||+.| + ++.+-++....+. .+.++
T Consensus 154 PvIVKP~~GGGGrG~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~g~-----r--eIeVqVlgD~~G~-vv~l~ 225 (1143)
T TIGR01235 154 PVIIKASWGGGGRGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIERP-----R--HIEVQLLGDKHGN-VVHLF 225 (1143)
T ss_pred CEEEEECCCCCCCccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCCC-----e--EEEEEEEEeCCCC-EEEEE
Confidence 59999999999999999999999887665311 1114579999999853 2 6777777543221 22222
Q ss_pred cceEEEecCCCCCCCcccccccchhhhhhhhcccCCCCCCCCCCCccchHHHHHHHHHhcCChhhHHHHHHHHHHHHHHH
Q psy10924 105 HEGYVRFCSKPYSNILLDEARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIMKAMEESIVTI 184 (322)
Q Consensus 105 ~~g~vR~s~~~y~~~~~d~~~HLTN~~iqk~~~~~~~~~~~~~~~~ws~~~~~~~L~~~~g~~~~~~~i~~~i~~~i~~~ 184 (322)
-|-|+. |..+... .+ . .+....-..+.++|.+.+...
T Consensus 226 ----eRdcsv------------------qrr~qk~-------------ie-------~-aPa~~L~~e~r~~I~~~A~kl 262 (1143)
T TIGR01235 226 ----ERDCSV------------------QRRHQKV-------------VE-------V-APAPYLSREVRDEIAEYAVKL 262 (1143)
T ss_pred ----eccccc------------------cccCceE-------------EE-------E-eCCCCCCHHHHHHHHHHHHHH
Confidence 122221 1100000 00 0 000011123344555555555
Q ss_pred HHHhccccccccCCCceeEEeeeEEeecCCceEEEEecCCCCCC
Q psy10924 185 MRCAQSINYIDLRKNSFQLFGADFLIHENYQPCLIEVNNGPGLS 228 (322)
Q Consensus 185 l~a~~~~~~~~~~~~~Fel~G~DfllD~~~kpwLIEVN~~P~l~ 228 (322)
+++.. .-....+||++|+++++|+||||..|.-+
T Consensus 263 a~aLg----------y~G~gtVEFlvd~dg~~yfIEVNPRiqve 296 (1143)
T TIGR01235 263 AKAVN----------YINAGTVEFLVDNDGKFYFIEVNPRIQVE 296 (1143)
T ss_pred HHHcC----------CcceEEEEEEEeCCCcEEEEEeecCCCcc
Confidence 54432 22356899999999999999999999754
No 50
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=98.23 E-value=3e-05 Score=76.91 Aligned_cols=47 Identities=23% Similarity=0.504 Sum_probs=37.1
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCC-----CCCCCceeEeecccc
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLK-----NLTCPRCVVQKYIEK 76 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~-----~~~~~~~IvQkYI~~ 76 (322)
.+|+||..++.|+|+.++++.+++.+.+.... ......++||+||+.
T Consensus 154 PvvvKP~~g~gs~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g 205 (451)
T PRK08591 154 PVIIKATAGGGGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLEN 205 (451)
T ss_pred CEEEEECCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCC
Confidence 58999999999999999999999887776411 011357999999983
No 51
>PRK08462 biotin carboxylase; Validated
Probab=98.21 E-value=2.3e-05 Score=77.67 Aligned_cols=48 Identities=19% Similarity=0.286 Sum_probs=37.4
Q ss_pred ceEEEeCCCCCCCCCeEEeCChhHHHHHHhhC-----CCCCCCceeEeecccc
Q psy10924 29 NVWVLKPVANCSGHGIRIYRQLEDIKRAIGTL-----KNLTCPRCVVQKYIEK 76 (322)
Q Consensus 29 ~~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~-----~~~~~~~~IvQkYI~~ 76 (322)
-.+|+||..|+.|+|+.++++.+++...+... .......+++|+||+.
T Consensus 155 ~PvvvKP~~g~gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~g 207 (445)
T PRK08462 155 YPVILKAAAGGGGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFINN 207 (445)
T ss_pred CCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCCC
Confidence 35999999999999999999999988766421 1111356899999984
No 52
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=98.21 E-value=3.3e-05 Score=82.72 Aligned_cols=54 Identities=26% Similarity=0.416 Sum_probs=42.8
Q ss_pred eEEEeCCCCCCCCCeEE-eCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEE
Q psy10924 30 VWVLKPVANCSGHGIRI-YRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYV 92 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~-~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvl 92 (322)
..++||..++.|+|+.+ +.+.+++.+.+..-... ...++||+||+ |+ |+|++|+
T Consensus 250 PvVVKP~~g~~G~GV~l~v~s~~el~~a~~~a~~~-~~~vlVEefI~------G~--e~rvlVv 304 (864)
T TIGR02068 250 PVVIKPYDGNHGRGVTINILTRDEIESAYEAAVEE-SSGVIVERFIT------GR--DHRLLVV 304 (864)
T ss_pred CEEEEECCCCCccCEEEEeCCHHHHHHHHHHHHhh-CCcEEEEEecc------CC--EEEEEEE
Confidence 47999999999999998 89998888766542211 45799999996 64 8898775
No 53
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=98.19 E-value=3.1e-05 Score=81.45 Aligned_cols=54 Identities=28% Similarity=0.502 Sum_probs=40.1
Q ss_pred eEEEeCCCCCCCCCeEEeCC---hhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQ---LEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYV 92 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~---~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvl 92 (322)
.-|+||..|+.|+||.++++ .+++.+.+..-... ...++||+||. |+ |+|+.|+
T Consensus 526 PvVVKP~~g~~G~GV~~~~~~~~~eel~~A~~~a~~~-~~~vlVEEfI~------G~--E~Rv~Vi 582 (752)
T PRK02471 526 AIVVKPKSTNFGLGISIFKEPASLEDYEKALEIAFRE-DSSVLVEEFIV------GT--EYRFFVL 582 (752)
T ss_pred CEEEEECCCCCcCCeEEecCcCCHHHHHHHHHHHHhc-CCcEEEEeccc------CC--EEEEEEE
Confidence 48999999999999998754 56666555431111 45799999996 65 9998776
No 54
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=98.19 E-value=4.4e-05 Score=76.57 Aligned_cols=47 Identities=26% Similarity=0.442 Sum_probs=37.3
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCC-----CCCCCceeEeecccc
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLK-----NLTCPRCVVQKYIEK 76 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~-----~~~~~~~IvQkYI~~ 76 (322)
.+|+||..|+.|+|+.++++.+++...+.... ......++||+||+.
T Consensus 154 PvvvKP~~ggGg~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~~ 205 (478)
T PRK08463 154 PVILKASGGGGGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVVN 205 (478)
T ss_pred CEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCC
Confidence 58999999999999999999999887665310 011467999999974
No 55
>PRK02186 argininosuccinate lyase; Provisional
Probab=98.18 E-value=1.9e-05 Score=84.90 Aligned_cols=57 Identities=21% Similarity=0.382 Sum_probs=45.2
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYV 92 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvl 92 (322)
.+|+||..++.|+|+.++++.+++.+.+..-.......++||+||+ |.-|++..++.
T Consensus 144 PvVVKP~~g~gS~GV~~v~~~~el~~a~~~~~~~~~~~~lvEEfI~------G~E~sVe~i~~ 200 (887)
T PRK02186 144 PVVVKPRMGSGSVGVRLCASVAEAAAHCAALRRAGTRAALVQAYVE------GDEYSVETLTV 200 (887)
T ss_pred CEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHhcCCCcEEEeeccc------CCcEEEEEEEE
Confidence 5899999999999999999999988776542111156899999998 77787776554
No 56
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=98.15 E-value=6.1e-05 Score=73.26 Aligned_cols=47 Identities=32% Similarity=0.483 Sum_probs=37.2
Q ss_pred ceEEEeCCCCCCCCCeEEeCChhHHHHHHhhCC---CCCCCceeEeeccc
Q psy10924 29 NVWVLKPVANCSGHGIRIYRQLEDIKRAIGTLK---NLTCPRCVVQKYIE 75 (322)
Q Consensus 29 ~~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~---~~~~~~~IvQkYI~ 75 (322)
-..|+||..++.|+|+.++++.+++.+.+.... +.....+|||+||+
T Consensus 150 ~P~VvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEefi~ 199 (395)
T PRK09288 150 YPCVVKPVMSSSGKGQSVVRSPEDIEKAWEYAQEGGRGGAGRVIVEEFID 199 (395)
T ss_pred CCEEEEeCCCcCCCCeEEECCHHHHHHHHHHHHhhccccCCCEEEEEecC
Confidence 358999999999999999999999887765421 00135799999997
No 57
>PRK06849 hypothetical protein; Provisional
Probab=98.15 E-value=1.4e-05 Score=77.90 Aligned_cols=53 Identities=19% Similarity=0.217 Sum_probs=37.6
Q ss_pred cceEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEE
Q psy10924 28 HNVWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVW 90 (322)
Q Consensus 28 ~~~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~y 90 (322)
...+|+||..++.|+|+.++.+.+.+..... .....+|+|+||+ |..+.+..+
T Consensus 152 ~~P~vlKP~~~~~~~~v~~~~~~~~l~~~~~----~~~~~~ivQe~I~------G~e~~~~~~ 204 (389)
T PRK06849 152 HTPYVLKPIYSRFVRRVDLLPKEAALKELPI----SKDNPWVMQEFIQ------GKEYCSYSI 204 (389)
T ss_pred CCcEEEEeCcccCCCeEEEecCHHHhccccc----CCCCCeEEEEEec------CCeEEEEEE
Confidence 4579999999999999999888544332211 1134699999998 776665544
No 58
>PRK05586 biotin carboxylase; Validated
Probab=98.15 E-value=4.6e-05 Score=75.66 Aligned_cols=57 Identities=28% Similarity=0.397 Sum_probs=41.5
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCC-----CCCCCceeEeeccccccccCCceeeEEEEEEE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLK-----NLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVI 93 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~-----~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlv 93 (322)
..|+||..++.|+|+.++++.+++.+.+.... ......+++|+||+.+ + ++.+-++.
T Consensus 154 PvvvKP~~gggg~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~g~-----~--ei~v~v~~ 215 (447)
T PRK05586 154 PVMVKASAGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENP-----K--HIEFQILG 215 (447)
T ss_pred CEEEEECCCCCCCeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCCC-----e--EEEEEEEE
Confidence 48999999999999999999999877665210 0113579999999832 2 45555554
No 59
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=98.08 E-value=8.8e-05 Score=73.51 Aligned_cols=72 Identities=10% Similarity=0.097 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHhccccccccCCCceeEEeeeEEeecCCceEEEEecCCCCCCCCChhHHHHHHHHHHHHhhch
Q psy10924 172 MIMKAMEESIVTIMRCAQSINYIDLRKNSFQLFGADFLIHENYQPCLIEVNNGPGLSPTTSIIAKKTTELLTDMVKVV 249 (322)
Q Consensus 172 ~i~~~i~~~i~~~l~a~~~~~~~~~~~~~Fel~G~DfllD~~~kpwLIEVN~~P~l~~~~~~~~~l~~~li~d~l~lv 249 (322)
++..++++++..++.+... .. ....+++.++||+.+++ ||+||+|..++=.....+...+...+++-++.++
T Consensus 246 ~~~~~i~~i~~~~~~~l~~----~~-~~~~G~l~~~~~lt~~g-p~ViE~n~R~gdpe~~~il~~l~~d~~~~~~~~~ 317 (435)
T PRK06395 246 DAPERAKHILNDIIRAMKD----EN-NPFKGIMYGQFMDTPNG-VKVIEINARFADPEGINVLYLLKSDFVETLHQIY 317 (435)
T ss_pred HHHHHHHHHHHHHHHHHHh----cC-CceEEEEEEEEEEeCCC-cEEEEEeCCCCCccHHhhhhhcccCHHHHHHHHh
Confidence 4445566666666666543 11 12447889999997555 9999999988754443444444444444444443
No 60
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=98.08 E-value=9.4e-05 Score=73.96 Aligned_cols=47 Identities=15% Similarity=0.307 Sum_probs=37.0
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhC-----CCCCCCceeEeecccc
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTL-----KNLTCPRCVVQKYIEK 76 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~-----~~~~~~~~IvQkYI~~ 76 (322)
.+|+||..|+.|+|+.++++.+++.+.+... .......++||+||+.
T Consensus 157 PvvvKp~~gggg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~ 208 (467)
T PRK12833 157 PLMIKAAAGGGGRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIAR 208 (467)
T ss_pred CEEEEECCCCCCCeEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCC
Confidence 5999999999999999999999988765421 0111457999999984
No 61
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=98.07 E-value=0.00015 Score=72.67 Aligned_cols=47 Identities=21% Similarity=0.347 Sum_probs=36.3
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhC-----CCCCCCceeEeecccc
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTL-----KNLTCPRCVVQKYIEK 76 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~-----~~~~~~~~IvQkYI~~ 76 (322)
..|+||..|+.|+|+.++++.+++.+.+... ........++++||+.
T Consensus 153 PvvvKp~~ggGg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~~ 204 (472)
T PRK07178 153 PVMLKATSGGGGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVN 204 (472)
T ss_pred cEEEEeCCCCCCCCceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCC
Confidence 5899999999999999999999988765421 0111356899999974
No 62
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=98.06 E-value=0.0001 Score=74.33 Aligned_cols=47 Identities=26% Similarity=0.437 Sum_probs=37.7
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCC-----CCCCCceeEeecccc
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLK-----NLTCPRCVVQKYIEK 76 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~-----~~~~~~~IvQkYI~~ 76 (322)
.+|+||..|+.|+|+.++++.+++.+.+.... ......+++|+||+.
T Consensus 154 PvvIKp~~GgGG~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~~ 205 (499)
T PRK08654 154 PVIIKASAGGGGIGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEK 205 (499)
T ss_pred CEEEEeCCCCCCCeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 59999999999999999999999887766421 111457999999985
No 63
>PRK12999 pyruvate carboxylase; Reviewed
Probab=98.01 E-value=0.00014 Score=79.90 Aligned_cols=58 Identities=28% Similarity=0.419 Sum_probs=43.0
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCC-----CCCCCceeEeeccccccccCCceeeEEEEEEEe
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLK-----NLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVIT 94 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~-----~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvt 94 (322)
.+|+||..|+.|+|+.++++.+++.+.+.... ......+++|+||+.| + ++.+-++..
T Consensus 158 PvVVKP~~GgGGrGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~g~-----~--~ieVqvl~D 220 (1146)
T PRK12999 158 PIMLKASAGGGGRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVENP-----R--HIEVQILGD 220 (1146)
T ss_pred CEEEEECCCCCCCCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCC-----e--EEEEEEEEE
Confidence 59999999999999999999999887665311 1114579999999842 2 466656654
No 64
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=98.00 E-value=8.9e-05 Score=71.12 Aligned_cols=59 Identities=15% Similarity=0.269 Sum_probs=45.0
Q ss_pred cceEEEeCCCCCC--CCCeEEeCChhHHHHHHhhCCC---C---CCCceeEeeccccccccCCceeeEEEEEE
Q psy10924 28 HNVWVLKPVANCS--GHGIRIYRQLEDIKRAIGTLKN---L---TCPRCVVQKYIEKPLLIHGVKFDLRVWYV 92 (322)
Q Consensus 28 ~~~WIvKP~~~s~--G~GI~~~~~~~~i~~~~~~~~~---~---~~~~~IvQkYI~~PlLi~grKFDiR~yvl 92 (322)
+...||||..+++ |+|++++++.+++......... . ....++||+||. |.-|.+=+|+-
T Consensus 152 d~PVIVKp~~asG~~srG~f~a~s~eEl~~~a~~l~~~g~I~~~~~~~~iIQEyI~------G~ey~~d~F~s 218 (366)
T PRK13277 152 DRPVIVKLPEAKRRLERGFFTASSYEDFYEKSEELIKAGVIDREDLKNARIEEYVI------GAHFNFNYFYS 218 (366)
T ss_pred CccEEEEECCCCCccccCeEeeCCHHHHHHHHHhhhhcCcccccccccceeEeccC------CCEEEEEEEEe
Confidence 4468999999999 9999999999998877654221 0 024667999998 88887776643
No 65
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=98.00 E-value=1.4e-05 Score=72.38 Aligned_cols=30 Identities=23% Similarity=0.419 Sum_probs=26.2
Q ss_pred CCceeEEeeeEEeecCCceEEEEecCCCCCCC
Q psy10924 198 KNSFQLFGADFLIHENYQPCLIEVNNGPGLSP 229 (322)
Q Consensus 198 ~~~Fel~G~DfllD~~~kpwLIEVN~~P~l~~ 229 (322)
.++++..|+|+++. ..|++||||..|.-..
T Consensus 231 ~Gl~GYVGVDlVls--D~pYvIEINpR~TTp~ 260 (307)
T COG1821 231 PGLNGYVGVDLVLS--DEPYVIEINPRPTTPT 260 (307)
T ss_pred ccccceeeEEEEec--CCcEEEEecCCCCcce
Confidence 46899999999998 8899999999887653
No 66
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.99 E-value=0.00015 Score=79.38 Aligned_cols=55 Identities=16% Similarity=0.309 Sum_probs=43.4
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCC-CCCCceeEeeccccccccCCc-eeeEEEE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-LTCPRCVVQKYIEKPLLIHGV-KFDLRVW 90 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~-~~~~~~IvQkYI~~PlLi~gr-KFDiR~y 90 (322)
.+|+||+.++.|+|+.++.+.+++...+..... ....+++||+||+ |. -+++.+.
T Consensus 706 PvvVKP~~~~Gg~Gv~iv~~~eeL~~~~~~a~~~s~~~~vlIEefI~------G~~E~sV~~v 762 (1066)
T PRK05294 706 PVLVRPSYVLGGRAMEIVYDEEELERYMREAVKVSPDHPVLIDKFLE------GAIEVDVDAI 762 (1066)
T ss_pred CeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhCCCCcEEEEecCC------CCEEEEEEEE
Confidence 599999999999999999999999887764211 1146799999998 55 6777653
No 67
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=97.99 E-value=0.0002 Score=73.41 Aligned_cols=45 Identities=20% Similarity=0.272 Sum_probs=35.4
Q ss_pred eEEEeCCCCC-CCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccc
Q psy10924 30 VWVLKPVANC-SGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIE 75 (322)
Q Consensus 30 ~WIvKP~~~s-~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~ 75 (322)
..|+||..++ .|+|+.++++.+++.+.+..-... ...++|++||+
T Consensus 158 P~VvKP~~ggs~g~Gv~~v~~~~eL~~a~~~~~~~-~~~vlvEefI~ 203 (577)
T PLN02948 158 PLMLKSRRLAYDGRGNAVAKTEEDLSSAVAALGGF-ERGLYAEKWAP 203 (577)
T ss_pred cEEEEeCCCCCCCCCeEEECCHHHHHHHHHHhhCC-CCcEEEEecCC
Confidence 4899999765 799999999999988877642211 35789999985
No 68
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=97.85 E-value=0.00025 Score=77.53 Aligned_cols=57 Identities=18% Similarity=0.279 Sum_probs=44.9
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCC-CCCCCceeEeeccccccccCCceeeEEEEE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLK-NLTCPRCVVQKYIEKPLLIHGVKFDLRVWY 91 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~-~~~~~~~IvQkYI~~PlLi~grKFDiR~yv 91 (322)
.+|+||+.++.|+|+.++.+.+++.+.+.... .....+++||+||+. |+-+++.+++
T Consensus 706 PvIVKP~~~~Gg~gv~iv~~~eeL~~~l~~a~~~s~~~~vlVeefI~~-----G~E~~Vd~l~ 763 (1050)
T TIGR01369 706 PVLVRPSYVLGGRAMEIVYNEEELRRYLEEAVEVSPEHPVLIDKYLED-----AVEVDVDAVS 763 (1050)
T ss_pred CEEEEECCCCCCCCeEEECCHHHHHHHHHHHHHhCCCCCEEEeecCCC-----CeEEEEEEEE
Confidence 48999999999999999999999988776421 011457999999985 7778876553
No 69
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.78 E-value=0.00065 Score=74.48 Aligned_cols=54 Identities=9% Similarity=0.271 Sum_probs=43.7
Q ss_pred ceEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEE
Q psy10924 29 NVWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRV 89 (322)
Q Consensus 29 ~~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~ 89 (322)
-.+|+||+.++.|+|+.++.+.+++.+.+.... ....+++||+||+ |+.+++-+
T Consensus 706 yPvVVKP~~~~Gg~gv~iv~~~eeL~~~l~~~~-s~~~~vlIeefI~------G~E~~Vd~ 759 (1068)
T PRK12815 706 YPVLIRPSYVIGGQGMAVVYDEPALEAYLAENA-SQLYPILIDQFID------GKEYEVDA 759 (1068)
T ss_pred CCEEEEeCCCCCCCCEEEECCHHHHHHHHHHhh-cCCCCEEEEEeec------CceEEEEE
Confidence 359999999999999999999999988877531 1256899999996 77776555
No 70
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=97.75 E-value=0.00091 Score=59.04 Aligned_cols=143 Identities=15% Similarity=0.226 Sum_probs=75.8
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhC---CCC--CCCceeEeeccccccccCCceeeEEEEEEEee--ecCcEEE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTL---KNL--TCPRCVVQKYIEKPLLIHGVKFDLRVWYVITN--IDKFKIW 102 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~---~~~--~~~~~IvQkYI~~PlLi~grKFDiR~yvlvts--~~pl~vy 102 (322)
..++||...+.|+|+.++.+.++..+.+..- ... .....||++|++ |..+. +.+++.. +-|+-.
T Consensus 40 ~~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~~~~fg~~~~~vvIEE~l~------G~E~S--~~a~~dG~~~~~lp~- 110 (194)
T PF01071_consen 40 YVVIKADGLAAGKGVVIADDREEALEALREIFVDRKFGDAGSKVVIEEFLE------GEEVS--LFALTDGKNFVPLPP- 110 (194)
T ss_dssp EEEEEESSSCTTTSEEEESSHHHHHHHHHHHHTSSTTCCCGSSEEEEE---------SEEEE--EEEEEESSEEEEEEE-
T ss_pred ceEEccCCCCCCCEEEEeCCHHHHHHHHHHhccccccCCCCCcEEEEeccC------CeEEE--EEEEEcCCeEEECcc-
Confidence 3799999999999999999988776665541 111 146899999998 66544 3444332 111111
Q ss_pred EecceEEEecCCCCCCCcccccccchhhhhhhhcccCCCCCCCCCCCccchHHHHHHHHHhcCChhhHHHHHHHHHH-HH
Q psy10924 103 VYHEGYVRFCSKPYSNILLDEARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIMKAMEE-SI 181 (322)
Q Consensus 103 ~y~~g~vR~s~~~y~~~~~d~~~HLTN~~iqk~~~~~~~~~~~~~~~~ws~~~~~~~L~~~~g~~~~~~~i~~~i~~-~i 181 (322)
..-|=|.... |. .+ ..|.|.+.... +...+++...+.+ ++
T Consensus 111 --aqD~Kr~~dg-------d~------------Gp--------nTGGMGa~sp~----------p~~~~~~~~~i~~~I~ 151 (194)
T PF01071_consen 111 --AQDHKRLFDG-------DT------------GP--------NTGGMGAYSPV----------PFITDELLEEIIEEIL 151 (194)
T ss_dssp --BEEEEEEETT-------TE------------EE--------EESESEEEEST----------TTS-HHHHHHHHHHTH
T ss_pred --hhccccccCC-------CC------------CC--------CCCCccceeec----------ccCCHHHHHHHHHHHH
Confidence 1111111110 00 00 02334433311 0111223333333 55
Q ss_pred HHHHHHhccccccccCCCceeEEeeeEEeecCCceEEEEecCCCC
Q psy10924 182 VTIMRCAQSINYIDLRKNSFQLFGADFLIHENYQPCLIEVNNGPG 226 (322)
Q Consensus 182 ~~~l~a~~~~~~~~~~~~~Fel~G~DfllD~~~kpwLIEVN~~P~ 226 (322)
.-++.+.+. .......++.+.+|+.++| |++||.|...+
T Consensus 152 ~pt~~~l~~-----eg~~y~GvLy~glMlt~~G-p~vlEfN~RfG 190 (194)
T PF01071_consen 152 EPTLKGLKK-----EGIPYRGVLYAGLMLTEDG-PKVLEFNVRFG 190 (194)
T ss_dssp HHHHHHHHH-----TT---EEEEEEEEEEETTE-EEEEEEESSGS
T ss_pred HHHHHHHHh-----cCCCcceeeeeeeEEeCCC-cEEEEEeCCCC
Confidence 555555543 1235678999999999777 99999998754
No 71
>PLN02735 carbamoyl-phosphate synthase
Probab=97.75 E-value=0.00039 Score=76.28 Aligned_cols=55 Identities=18% Similarity=0.260 Sum_probs=41.6
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCC-CCCCceeEeeccccccccCCceeeEEE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-LTCPRCVVQKYIEKPLLIHGVKFDLRV 89 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~-~~~~~~IvQkYI~~PlLi~grKFDiR~ 89 (322)
..|+||+.++.|+|+.++.+.+++.+.+..... ....+++||+||+. |+-+++=+
T Consensus 739 PvvVKP~~g~gG~G~~iV~~~eeL~~al~~a~~~~~~~~vlVEefI~~-----g~Ei~V~v 794 (1102)
T PLN02735 739 PVVVRPSYVLGGRAMEIVYSDDKLKTYLETAVEVDPERPVLVDKYLSD-----ATEIDVDA 794 (1102)
T ss_pred CeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHHhcCCCCEEEEEecCC-----cEEEEEEE
Confidence 489999999999999999999999877664211 11357999999974 56666433
No 72
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=97.66 E-value=0.0012 Score=66.46 Aligned_cols=70 Identities=11% Similarity=0.148 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHhccccccccCCCceeEEeeeEEeecCCceEEEEecCCCCCCCCChhHHHHHHHHHHHHhhc
Q psy10924 175 KAMEESIVTIMRCAQSINYIDLRKNSFQLFGADFLIHENYQPCLIEVNNGPGLSPTTSIIAKKTTELLTDMVKV 248 (322)
Q Consensus 175 ~~i~~~i~~~l~a~~~~~~~~~~~~~Fel~G~DfllD~~~kpwLIEVN~~P~l~~~~~~~~~l~~~li~d~l~l 248 (322)
..+.+++..++.+... .. .......+-.+||++++..|+|||+|+.++=...+.+...+...+++-++++
T Consensus 264 ~~~~~~v~~~l~al~~--~~--g~~~~G~l~~elmlt~~~GP~vIE~n~R~Gdpe~~~llp~l~~dl~~~~~~~ 333 (486)
T PRK05784 264 EEAVEIVKRTIDAIYK--ET--GERYVGVISGQMMLTELWGPTVIEYYSRFGDPEASNIIPRIESDFGELFELA 333 (486)
T ss_pred HHHHHHHHHHHHHHHH--hc--CCCcEEEEEEEEEEecCCCcEEEEEecccCCchHHHHHHhccCCHHHHHHHH
Confidence 3344556666665543 10 1112377888999983445999999998883222233333444444433333
No 73
>PLN02735 carbamoyl-phosphate synthase
Probab=97.66 E-value=0.00093 Score=73.33 Aligned_cols=46 Identities=15% Similarity=0.168 Sum_probs=37.1
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCC-CCCCceeEeeccc
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-LTCPRCVVQKYIE 75 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~-~~~~~~IvQkYI~ 75 (322)
.-|+||+.++.|+|+.++++.+++.+.+..... ......+|++||.
T Consensus 182 PvVVKP~~~~GG~Gv~iv~n~eEL~~a~~~a~~~s~~~~VLVEe~I~ 228 (1102)
T PLN02735 182 PLIIRPAFTLGGTGGGIAYNKEEFETICKAGLAASITSQVLVEKSLL 228 (1102)
T ss_pred CEEEEeCCCCCCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 379999999999999999999999887754210 1146799999998
No 74
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=97.63 E-value=0.00088 Score=66.36 Aligned_cols=47 Identities=30% Similarity=0.589 Sum_probs=38.5
Q ss_pred EEEeCCCCCCCCCeEEeCChhHHHHHHhhCC-----CCCCCceeEeeccccc
Q psy10924 31 WVLKPVANCSGHGIRIYRQLEDIKRAIGTLK-----NLTCPRCVVQKYIEKP 77 (322)
Q Consensus 31 WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~-----~~~~~~~IvQkYI~~P 77 (322)
-|+||+.|..|+|++++++.+++.+.+.... .......+++|||++|
T Consensus 155 VivKa~~GgGg~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~ 206 (449)
T COG0439 155 VIVKAAAGGGGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGP 206 (449)
T ss_pred EEEEECCCCCcccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccCC
Confidence 8999999999999999999999888776421 1124569999999976
No 75
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=97.63 E-value=0.0028 Score=56.82 Aligned_cols=157 Identities=16% Similarity=0.195 Sum_probs=86.4
Q ss_pred EEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCC-----CCCceeEeeccccccccCCceeeEEEEEEEeeecC-cEEEEe
Q psy10924 31 WVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNL-----TCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDK-FKIWVY 104 (322)
Q Consensus 31 WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~-----~~~~~IvQkYI~~PlLi~grKFDiR~yvlvts~~p-l~vy~y 104 (322)
.++||+.+..|+|+.++.+.+++...+...... ...+.++.+||+++ | +|=+-++..+.+- +.++ -
T Consensus 41 VliKas~ggGG~gm~iv~~~~eL~~~~~~~~~~s~~~fg~~~v~iek~i~~~-----r--eiEvqvi~D~~gn~~~~~-~ 112 (211)
T PF02786_consen 41 VLIKASAGGGGRGMRIVHNEEELEEAFERAQRESPAAFGDGPVLIEKFIEGA-----R--EIEVQVIRDGKGNVVHLG-E 112 (211)
T ss_dssp EEEEETTSSTTTSEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSE-----E--EEEEEEEEETTSEEEEEE-E
T ss_pred eEEeecccccccccccccchhhhhhhhhhccccCccccccceEEEeeehhhh-----h--hhhhhhhhccccceeeee-e
Confidence 899999999999999999999988877642111 15789999999953 2 3334444432211 1111 1
Q ss_pred cceEEEecCCCCCCCcccccccchhhhhhhhcccCCCCCCCCCCCccchHHHHHHHHHhcCChhhHHHHHHHHHHHHHHH
Q psy10924 105 HEGYVRFCSKPYSNILLDEARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIMKAMEESIVTI 184 (322)
Q Consensus 105 ~~g~vR~s~~~y~~~~~d~~~HLTN~~iqk~~~~~~~~~~~~~~~~ws~~~~~~~L~~~~g~~~~~~~i~~~i~~~i~~~ 184 (322)
+++.....+. |. ++. .......+++..+|++.....
T Consensus 113 ~e~~~~~hs~-------------------ds-----------------i~~--------~P~~~L~~~~~~~l~~~a~~i 148 (211)
T PF02786_consen 113 RECSEQRHSQ-------------------DS-----------------IEE--------APAQTLSDEERQKLREAAKKI 148 (211)
T ss_dssp EEEEEEETTE-------------------EE-----------------EEE--------ES-SSS-HHHHHHHHHHHHHH
T ss_pred eccccccccc-------------------cc-----------------eeE--------eeccccchHHHHHHHHHHHHH
Confidence 2222221110 00 000 011111233445555555555
Q ss_pred HHHhccccccccCCCceeEEeeeEEeec-CCceEEEEecCCCCCCCCChhHHH-HHHHHHHHHhhchhc
Q psy10924 185 MRCAQSINYIDLRKNSFQLFGADFLIHE-NYQPCLIEVNNGPGLSPTTSIIAK-KTTELLTDMVKVVTA 251 (322)
Q Consensus 185 l~a~~~~~~~~~~~~~Fel~G~DfllD~-~~kpwLIEVN~~P~l~~~~~~~~~-l~~~li~d~l~lv~d 251 (322)
.++. +.-...-+=|++|. +++.|+||||. -++.+++++.. .-..+++-.+++.+.
T Consensus 149 a~~l----------~~~G~~tvef~~~~~~~~~y~lEvNp--R~~~~~p~~e~~tg~dlv~~~~~ia~G 205 (211)
T PF02786_consen 149 ARAL----------GYVGAGTVEFAVDPDDGEFYFLEVNP--RLQREHPVTEKVTGYDLVRVQIRIALG 205 (211)
T ss_dssp HHHT----------T-EEEEEEEEEEETTTTEEEEEEEES--S--TTHHHHHHHHT--HHHHHHHHHTT
T ss_pred HHhh----------CeeecceEEEEEccCccceeeecccC--CCCCcchHHHHHHCCCHHHHHHHHHCC
Confidence 5443 23467788899998 99999999986 45555666655 346666766666553
No 76
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=97.50 E-value=0.0021 Score=71.09 Aligned_cols=48 Identities=19% Similarity=0.308 Sum_probs=37.1
Q ss_pred ceEEEeCCCCCCCCCeEEeCChhHHHHHHhhCC-----CCCCCceeEeecccc
Q psy10924 29 NVWVLKPVANCSGHGIRIYRQLEDIKRAIGTLK-----NLTCPRCVVQKYIEK 76 (322)
Q Consensus 29 ~~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~-----~~~~~~~IvQkYI~~ 76 (322)
-.+|+||..++.|+|+.++++.+++.+.+..-. ......++||+||+.
T Consensus 151 yPvVVKP~~ggGG~GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~g 203 (1201)
T TIGR02712 151 YPVMLKSTAGGGGIGMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVEN 203 (1201)
T ss_pred CeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCC
Confidence 369999999999999999999999886655311 011346999999984
No 77
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.49 E-value=0.0016 Score=71.54 Aligned_cols=46 Identities=11% Similarity=0.185 Sum_probs=36.4
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCC-CCCCceeEeeccc
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-LTCPRCVVQKYIE 75 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~-~~~~~~IvQkYI~ 75 (322)
.-|+||+.+..|+|+.++++.+++.+.+..... .....++||+||+
T Consensus 165 PvVVKP~~g~gg~Gv~iv~~~eeL~~a~~~~~~~s~~~~vlvEe~I~ 211 (1066)
T PRK05294 165 PVIIRPSFTLGGTGGGIAYNEEELEEIVERGLDLSPVTEVLIEESLL 211 (1066)
T ss_pred CeEEEcCCCCCCCCeEEECCHHHHHHHHHHHHhhCCCCeEEEEEccc
Confidence 479999999999999999999998876652110 0135799999997
No 78
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=97.48 E-value=0.0024 Score=70.03 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=36.4
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCC-CCCceeEeeccc
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNL-TCPRCVVQKYIE 75 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~-~~~~~IvQkYI~ 75 (322)
..|+||+.+..|+|+.++++.+++.+.+...... ....++||+||.
T Consensus 164 PvIVKP~~g~gg~Gv~iv~~~eeL~~~~~~~~~~s~~~~vlVEe~I~ 210 (1050)
T TIGR01369 164 PVIVRPAFTLGGTGGGIAYNREELKEIAERALSASPINQVLVEKSLA 210 (1050)
T ss_pred CeEEECCCCCCCCCeEEECCHHHHHHHHHHHHhcCCCCcEEEEEccc
Confidence 4799999999999999999999988765432111 025799999998
No 79
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=97.30 E-value=0.0094 Score=59.80 Aligned_cols=162 Identities=17% Similarity=0.265 Sum_probs=99.3
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCC-----CCCCCceeEeeccccccccCCceeeEEEEEEEeeecCcEEEEe
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLK-----NLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIWVY 104 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~-----~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvts~~pl~vy~y 104 (322)
.-.+|.+.|..|+|.+++.+.+++.+.+.+.. .......+|-||+++| | ||=+-|+-.... -.+|++
T Consensus 154 PVlIKAsaGGGGKGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~P-----R--HIEiQV~aD~HG-Nvv~Lg 225 (645)
T COG4770 154 PVLIKASAGGGGKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDKP-----R--HIEIQVFADQHG-NVVHLG 225 (645)
T ss_pred cEEEEeccCCCCCceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCCC-----c--eEEEEEEecCCC-CEEEee
Confidence 37899999999999999999999988877621 2237889999999987 3 566666654422 233332
Q ss_pred cceEEEecCCCCCCCcccccccchhhhhhhhcccCCCCCCCCCCCccchHHHHHHHHHhcCChhhHHHHHHHHHHHHHHH
Q psy10924 105 HEGYVRFCSKPYSNILLDEARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIMKAMEESIVTI 184 (322)
Q Consensus 105 ~~g~vR~s~~~y~~~~~d~~~HLTN~~iqk~~~~~~~~~~~~~~~~ws~~~~~~~L~~~~g~~~~~~~i~~~i~~~i~~~ 184 (322)
. |= .|+|+.+++.. ++ -..+...++....|......+
T Consensus 226 E----Rd------------------CSlQRRhQKVI--------------------EE-APaP~l~~~~R~amg~aAv~~ 262 (645)
T COG4770 226 E----RD------------------CSLQRRHQKVI--------------------EE-APAPFLTEETREAMGEAAVAA 262 (645)
T ss_pred c----cc------------------cchhhhcchhh--------------------hc-CCCCCCCHHHHHHHHHHHHHH
Confidence 2 21 23555544321 11 111122233344454444444
Q ss_pred HHHhccccccccCCCceeEEeeeEEeecCCceEEEEecCCCCCCCCChhHHHH-HHHHHHHHhhchhcCCC
Q psy10924 185 MRCAQSINYIDLRKNSFQLFGADFLIHENYQPCLIEVNNGPGLSPTTSIIAKK-TTELLTDMVKVVTAERN 254 (322)
Q Consensus 185 l~a~~~~~~~~~~~~~Fel~G~DfllD~~~kpwLIEVN~~P~l~~~~~~~~~l-~~~li~d~l~lv~d~~~ 254 (322)
.+++- ...-+ -+-|++|.++.-|+||+|+. |...++++..+ --.|++.+|++.-....
T Consensus 263 a~avg-----Y~gAG-----TVEFivd~~~~f~FlEMNTR--LQVEHPVTE~iTGiDLVewqiRVA~GekL 321 (645)
T COG4770 263 AKAVG-----YVGAG-----TVEFIVDADGNFYFLEMNTR--LQVEHPVTELITGIDLVEWQIRVASGEKL 321 (645)
T ss_pred HHhcC-----CCcCc-----eEEEEEcCCCcEEEEEeecc--eeccccchhhhhhhHHHHHHHHHhcCCcC
Confidence 44432 11123 35689999999999999996 44455666554 45677888887654443
No 80
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=97.24 E-value=0.035 Score=48.18 Aligned_cols=126 Identities=17% Similarity=0.214 Sum_probs=77.0
Q ss_pred eEEEe-CCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEEEeee-------cCcEE
Q psy10924 30 VWVLK-PVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNI-------DKFKI 101 (322)
Q Consensus 30 ~WIvK-P~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvts~-------~pl~v 101 (322)
..|+| +..|.-|+|..++++.+++.+....-. ..++|++++|+- +--+=|++... -|..-
T Consensus 30 P~vlK~~~~GYDGkGq~~i~~~~dl~~a~~~~~---~~~~ilE~~v~f---------~~EiSvivaR~~~G~~~~yp~~e 97 (172)
T PF02222_consen 30 PAVLKTRRGGYDGKGQFVIRSEEDLEKAWQELG---GGPCILEEFVPF---------DREISVIVARDQDGEIRFYPPVE 97 (172)
T ss_dssp SEEEEESSSSCTTTTEEEESSGGGHHHHHHHTT---TSCEEEEE---E---------SEEEEEEEEEETTSEEEEEEEEE
T ss_pred CEEEEccCcCcCCCccEEECCHHHHHHHHHhcC---CCcEEEEeccCC---------cEEEEEEEEEcCCCCEEEEcCce
Confidence 38999 677899999999999999988776542 688999999973 22222222211 12222
Q ss_pred EEecceEEEecCCCCCCCcccccccchhhhhhhhcccCCCCCCCCCCCccchHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q psy10924 102 WVYHEGYVRFCSKPYSNILLDEARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIMKAMEESI 181 (322)
Q Consensus 102 y~y~~g~vR~s~~~y~~~~~d~~~HLTN~~iqk~~~~~~~~~~~~~~~~ws~~~~~~~L~~~~g~~~~~~~i~~~i~~~i 181 (322)
-+|++|.++.+..|..+ -+.+..+++++.
T Consensus 98 n~~~~~il~~s~~Pa~i---------------------------------------------------~~~~~~~a~~ia 126 (172)
T PF02222_consen 98 NVHRDGILHESIAPARI---------------------------------------------------SDEVEEEAKEIA 126 (172)
T ss_dssp EEEETTEEEEEEESCSS----------------------------------------------------HHHHHHHHHHH
T ss_pred EEEECCEEEEEECCCCC---------------------------------------------------CHHHHHHHHHHH
Confidence 34566666655443111 112333344444
Q ss_pred HHHHHHhccccccccCCCceeEEeeeEEeecCCc-eEEEEecCCCCCC
Q psy10924 182 VTIMRCAQSINYIDLRKNSFQLFGADFLIHENYQ-PCLIEVNNGPGLS 228 (322)
Q Consensus 182 ~~~l~a~~~~~~~~~~~~~Fel~G~DfllD~~~k-pwLIEVN~~P~l~ 228 (322)
...+.+. +..++|++.|.++++|+ +|+-||-..|.-+
T Consensus 127 ~~i~~~l----------~~vGv~~VE~Fv~~~g~~v~vNEiaPRpHnS 164 (172)
T PF02222_consen 127 RKIAEAL----------DYVGVLAVEFFVTKDGDEVLVNEIAPRPHNS 164 (172)
T ss_dssp HHHHHHH----------TSSEEEEEEEEEETTSTEEEEEEEESS--GG
T ss_pred HHHHHHc----------CcEEEEEEEEEEecCCCEEEEEeccCCccCc
Confidence 4444433 24699999999999998 9999998877543
No 81
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.07 E-value=0.012 Score=64.72 Aligned_cols=46 Identities=17% Similarity=0.330 Sum_probs=36.5
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCC-CCCCceeEeeccc
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-LTCPRCVVQKYIE 75 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~-~~~~~~IvQkYI~ 75 (322)
..|+||+.+..|+|+.++++.+++.+.+..... .....++||+||+
T Consensus 165 PvVVKP~~g~gG~Gv~iv~~~eEL~~a~~~~~~~s~~~~vLVEe~I~ 211 (1068)
T PRK12815 165 PIIVRPAYTLGGTGGGIAENLEELEQLFKQGLQASPIHQCLLEESIA 211 (1068)
T ss_pred CEEEEECcCCCCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEccC
Confidence 489999999999999999999998877643211 0135799999997
No 82
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=96.91 E-value=0.017 Score=55.20 Aligned_cols=29 Identities=31% Similarity=0.399 Sum_probs=25.9
Q ss_pred eeEEeeeEEeecCCceEEEEecCCCCCCC
Q psy10924 201 FQLFGADFLIHENYQPCLIEVNNGPGLSP 229 (322)
Q Consensus 201 Fel~G~DfllD~~~kpwLIEVN~~P~l~~ 229 (322)
=.+++++|-.|.+|+|+|||||..|+=..
T Consensus 257 ~g~~NiQ~r~d~~g~p~LLEINpR~sGGi 285 (329)
T PF15632_consen 257 DGLFNIQFRYDEDGNPKLLEINPRPSGGI 285 (329)
T ss_pred CceEEEEEEEcCCCCEEEEEeCCCCccch
Confidence 37889999999999999999999998764
No 83
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=96.61 E-value=0.098 Score=51.11 Aligned_cols=167 Identities=16% Similarity=0.193 Sum_probs=93.1
Q ss_pred ceEEEeCCCCCCCCCeEEeCChhHHHHHHhh---CCC--CCCCceeEeeccccccccCCceeeEEEEEEEeeecCcEEEE
Q psy10924 29 NVWVLKPVANCSGHGIRIYRQLEDIKRAIGT---LKN--LTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIWV 103 (322)
Q Consensus 29 ~~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~---~~~--~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvts~~pl~vy~ 103 (322)
..|++||.....|+|+.+..+.++..+.+.. ... ....+.||-.|++ |--|.+ .+++.. -.++
T Consensus 139 ~piVVKadGLaaGKGV~V~~~~eeA~~a~~~~l~~~~fg~~g~~VVIEEfL~------GeE~S~--~a~~DG---~~v~- 206 (428)
T COG0151 139 APIVVKADGLAAGKGVIVAMTLEEAEAAVDEMLEGNAFGSAGARVVIEEFLD------GEEFSL--QAFVDG---KTVI- 206 (428)
T ss_pred CCEEEecccccCCCCeEEcCCHHHHHHHHHHHHhhccccCCCCcEEEEeccc------ceEEEE--EEEEcC---CeEE-
Confidence 3599999999999999999998887776542 100 1125688898887 655553 333322 1110
Q ss_pred ecceEEEecCCCCCCCcccccccchhhhhhhhcccCCCCCCCCCCCccchHHHHHHHHHhcCChhhHHHHHHH-HHHHHH
Q psy10924 104 YHEGYVRFCSKPYSNILLDEARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIMKA-MEESIV 182 (322)
Q Consensus 104 y~~g~vR~s~~~y~~~~~d~~~HLTN~~iqk~~~~~~~~~~~~~~~~ws~~~~~~~L~~~~g~~~~~~~i~~~-i~~~i~ 182 (322)
.-.. .|.|-.-+..+.--..|.|.+.+.. +...+++..+ +++++.
T Consensus 207 -----p~p~-------------------aQDhKra~dgD~GPNTGGMGaysp~----------P~~t~e~~~~~~~~Iv~ 252 (428)
T COG0151 207 -----PMPT-------------------AQDHKRAYDGDTGPNTGGMGAYSPA----------PFITDEVVERAVEEIVE 252 (428)
T ss_pred -----ECcc-------------------ccccccccCCCCCCCCCCCCCCCCC----------CCCCHHHHHHHHHHHHH
Confidence 0001 1221111111111113555554431 1222333333 336777
Q ss_pred HHHHHhccccccccCCCceeEEeeeEEeecCCceEEEEecCCCCCCCCChhHHHHHHHHHHHHhh
Q psy10924 183 TIMRCAQSINYIDLRKNSFQLFGADFLIHENYQPCLIEVNNGPGLSPTTSIIAKKTTELLTDMVK 247 (322)
Q Consensus 183 ~~l~a~~~~~~~~~~~~~Fel~G~DfllD~~~kpwLIEVN~~P~l~~~~~~~~~l~~~li~d~l~ 247 (322)
.++..... + ......++=.=||++.+| |.+||.|..=+=.....+...+...+++-+..
T Consensus 253 ptv~gm~~----E-G~~f~GvLy~glMlt~~G-PkViEfN~RFGDPEtq~vL~~l~sdl~~~~~a 311 (428)
T COG0151 253 PTVEGMAK----E-GYPFRGVLYAGLMLTADG-PKVIEFNARFGDPETQVVLPLLESDLVELLLA 311 (428)
T ss_pred HHHHHHHH----c-CCCceEEEEeEEEEcCCC-cEEEEEecccCChhHHHHHHhccccHHHHHHH
Confidence 77776654 1 223457777789999999 99999999755444445555555444443333
No 84
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=96.42 E-value=0.066 Score=50.65 Aligned_cols=162 Identities=20% Similarity=0.241 Sum_probs=71.8
Q ss_pred hcCCcceEEEeCCC--CC-CCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEEEeeecCcE
Q psy10924 24 YDGTHNVWVLKPVA--NC-SGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFK 100 (322)
Q Consensus 24 ~~~~~~~WIvKP~~--~s-~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvts~~pl~ 100 (322)
..|-+=.-|+||.. |+ ....+.++-+.+.+.+. ..+.|+|+||.. +|. =+.+||+-..
T Consensus 134 ~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~L--------~~P~VlQeFVNH----ggv--LfKVyVvGd~----- 194 (307)
T PF05770_consen 134 EAGLKFPLICKPLVACGSADSHKMAIVFNEEGLKDL--------KPPCVLQEFVNH----GGV--LFKVYVVGDK----- 194 (307)
T ss_dssp CTTS-SSEEEEESB-SSTSCCCEEEEE-SGGGGTT----------SSEEEEE--------TTE--EEEEEEETTE-----
T ss_pred HCCCcccEEeeehhhcCCccceEEEEEECHHHHhhc--------CCCEEEEEeecC----CCE--EEEEEEecCE-----
Confidence 34455568999976 33 45677788777766432 457899999996 344 3467777421
Q ss_pred EEEecceEEEecCCCCCCCcccc-cccchhhhhhhhcccCCCCCCCCCCCccchHHHHHHHHHhcCChhhHHHHHHHHHH
Q psy10924 101 IWVYHEGYVRFCSKPYSNILLDE-ARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIMKAMEE 179 (322)
Q Consensus 101 vy~y~~g~vR~s~~~y~~~~~d~-~~HLTN~~iqk~~~~~~~~~~~~~~~~ws~~~~~~~L~~~~g~~~~~~~i~~~i~~ 179 (322)
+ ....|.|..+++....+. .+.+.=..+.+. . .... ...+... . .........+..+
T Consensus 195 v----~~v~R~SLpn~~~~~~~~~~~~f~~~~vs~~-~---------~~~~--~~~~d~~--~-~~~~~p~~~~v~~--- 252 (307)
T PF05770_consen 195 V----FVVKRPSLPNVSSGKLDREEIFFDFHQVSKL-E---------SSSD--LSDLDKD--P-SQVEMPPDELVEK--- 252 (307)
T ss_dssp E----EEEEEE------SSS-TCGGCCCEGGGTCST-T---------TSSG--GGSBSS---T-TTTTS--HHHHHH---
T ss_pred E----EEEECCCCCCCCcccccccccceeccccCCc-c---------ccCc--hhhcccC--c-ccccCCCHHHHHH---
Confidence 2 225677777766543321 111111111000 0 0000 0000000 0 0000011122222
Q ss_pred HHHHHHHHhccccccccCCCceeEEeeeEEeecC--CceEEEEecCCCCCCCCChhHHHH
Q psy10924 180 SIVTIMRCAQSINYIDLRKNSFQLFGADFLIHEN--YQPCLIEVNNGPGLSPTTSIIAKK 237 (322)
Q Consensus 180 ~i~~~l~a~~~~~~~~~~~~~Fel~G~DfllD~~--~kpwLIEVN~~P~l~~~~~~~~~l 237 (322)
+...++..- ...|||+|+++|+. ++.++|.||.-|++..-......+
T Consensus 253 -la~~LR~~l----------gL~LFgfDvI~~~~t~~~~~VIDINyFPgY~~vp~f~~~l 301 (307)
T PF05770_consen 253 -LAKELRRAL----------GLTLFGFDVIRENGTGGRYYVIDINYFPGYKKVPDFESVL 301 (307)
T ss_dssp -HHHHHHHHH----------T-SEEEEEEEEGCCT-SSEEEEEEEES--TTTSCTHHHHH
T ss_pred -HHHHHHHHh----------CcceeeeEEEEEcCCCCcEEEEEeccCCCccCCCChHHHH
Confidence 222232222 25899999999975 589999999999998765544433
No 85
>KOG0238|consensus
Probab=95.80 E-value=0.2 Score=49.91 Aligned_cols=163 Identities=17% Similarity=0.276 Sum_probs=95.7
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCC-----CCCCCceeEeeccccccccCCceeeEEEEEEEeeecCcEEEEe
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLK-----NLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIWVY 104 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~-----~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvts~~pl~vy~y 104 (322)
.-++|+++|..|+|..+..+.+++...+...+ .......++.|||+|| | ||-+-|+-...+ --+|++
T Consensus 150 PvMiKa~~GGGGkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~np-----R--HiEvQv~gD~hG-nav~l~ 221 (670)
T KOG0238|consen 150 PVMIKATAGGGGKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFIDNP-----R--HIEVQVFGDKHG-NAVHLG 221 (670)
T ss_pred cEEEEeccCCCCcceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhccCC-----c--eEEEEEEecCCC-cEEEec
Confidence 47899999999999999999999887776522 2236789999999997 3 455555543321 233332
Q ss_pred cceEEEecCCCCCCCcccccccchhhhhhhhcccCCCCCCCCCCCccchHHHHHHHHHhcCChhhHHHHHHHHHHHHHHH
Q psy10924 105 HEGYVRFCSKPYSNILLDEARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIMKAMEESIVTI 184 (322)
Q Consensus 105 ~~g~vR~s~~~y~~~~~d~~~HLTN~~iqk~~~~~~~~~~~~~~~~ws~~~~~~~L~~~~g~~~~~~~i~~~i~~~i~~~ 184 (322)
. |= .|+|+.++.. +++ -..+....+....|.++...+
T Consensus 222 E----Rd------------------CSvQRRnQKi--------------------iEE-aPap~l~~e~R~~lgeaAv~a 258 (670)
T KOG0238|consen 222 E----RD------------------CSVQRRNQKI--------------------IEE-APAPNLPEETRRALGEAAVRA 258 (670)
T ss_pred c----cc------------------cchhhhhhhh--------------------hhc-CCCCCCCHHHHHHHHHHHHHH
Confidence 2 11 2344443321 111 111111223333344444333
Q ss_pred HHHhccccccccCCCceeEEeeeEEeecCCceEEEEecCCCCCCCCChhHHHH-HHHHHHHHhhchhcCCCC
Q psy10924 185 MRCAQSINYIDLRKNSFQLFGADFLIHENYQPCLIEVNNGPGLSPTTSIIAKK-TTELLTDMVKVVTAERNP 255 (322)
Q Consensus 185 l~a~~~~~~~~~~~~~Fel~G~DfllD~~~kpwLIEVN~~P~l~~~~~~~~~l-~~~li~d~l~lv~d~~~p 255 (322)
.+++. .. ..+ .+.|++|+++.-+++|+|+.-.. .++++.-+ -..|++-++++......|
T Consensus 259 a~avg---Y~--~aG-----TVEFi~D~~~~FyFmEmNTRLQV--EHPvTEmItg~DLVewqiRvA~ge~lp 318 (670)
T KOG0238|consen 259 AKAVG---YV--GAG-----TVEFIVDSKDNFYFMEMNTRLQV--EHPVTEMITGTDLVEWQIRVAAGEPLP 318 (670)
T ss_pred HHhhC---Cc--ccc-----eEEEEEcCCCcEEEEEeeceeee--cccchhhccchHHHHHHHHHhcCCCCC
Confidence 33322 11 111 46789999999999999996444 44555433 467788888887644433
No 86
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=95.39 E-value=0.036 Score=54.89 Aligned_cols=79 Identities=20% Similarity=0.289 Sum_probs=48.0
Q ss_pred CcceEEEeCCCCCCCCCeEEeCC--hhHHHHHHhhCCCCCCCceeEeeccccccc-----cCCceeeEEEEEEEeeecCc
Q psy10924 27 THNVWVLKPVANCSGHGIRIYRQ--LEDIKRAIGTLKNLTCPRCVVQKYIEKPLL-----IHGVKFDLRVWYVITNIDKF 99 (322)
Q Consensus 27 ~~~~WIvKP~~~s~G~GI~~~~~--~~~i~~~~~~~~~~~~~~~IvQkYI~~PlL-----i~grKFDiR~yvlvts~~pl 99 (322)
.+.-||+||..+..|+||.+=.. .++-.+.++... ..+||+|+|++-+-+ -+|. +.+.-+... +
T Consensus 337 ~r~~lVLKP~D~Ygg~GV~~G~e~~~eeW~~~l~~a~---~~~yilQe~v~~~~~~~~~~~dg~-~~~~~~~~~-----~ 407 (445)
T PF14403_consen 337 NRDRLVLKPNDEYGGKGVYIGWETSPEEWEAALEEAA---REPYILQEYVRPPREPMPAFEDGE-VVFEEYPYD-----S 407 (445)
T ss_pred chhcEEeccccccCCCCeEECCcCCHHHHHHHHHHHh---cCCcEEEEEecCCccccccccCCc-eeEeeeeee-----c
Confidence 45679999999999999998544 334334443322 469999999984322 1343 222222222 2
Q ss_pred EEEEe----cceEEEecCC
Q psy10924 100 KIWVY----HEGYVRFCSK 114 (322)
Q Consensus 100 ~vy~y----~~g~vR~s~~ 114 (322)
..|+| .++|.|+++.
T Consensus 408 g~fly~~~~~G~~tR~g~~ 426 (445)
T PF14403_consen 408 GPFLYGGKFAGCYTRLGTG 426 (445)
T ss_pred cceeECCEEEEEEEEeccC
Confidence 23444 4678888854
No 87
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=94.90 E-value=0.28 Score=51.51 Aligned_cols=58 Identities=24% Similarity=0.354 Sum_probs=44.5
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCC-----CCCCCceeEeeccccccccCCceeeEEEEEEEe
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLK-----NLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVIT 94 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~-----~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvt 94 (322)
.-++|-+.|..|||..++++.+++.+.+...+ ........|.|||+||- ||-+-+|-.
T Consensus 160 PvmiKA~~GGGGRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve~pk-------HIEVQiLgD 222 (1149)
T COG1038 160 PVMIKAAAGGGGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVENPK-------HIEVQILGD 222 (1149)
T ss_pred cEEEEEccCCCccceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhhhcCcc-------eeEEEEeec
Confidence 48999999999999999999998887766422 12267888999999872 555666654
No 88
>KOG0369|consensus
Probab=94.80 E-value=0.17 Score=52.05 Aligned_cols=58 Identities=24% Similarity=0.371 Sum_probs=43.7
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhC-----CCCCCCceeEeeccccccccCCceeeEEEEEEEe
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTL-----KNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVIT 94 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~-----~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvt 94 (322)
.-|+|-+.|..|||+.++++.+++.+.+... ....+....|.|+|++|- +|-+-+|-.
T Consensus 186 PvI~KAAyGGGGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ekPr-------HIEvQllgD 248 (1176)
T KOG0369|consen 186 PVIIKAAYGGGGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEKPR-------HIEVQLLGD 248 (1176)
T ss_pred cEEEeecccCCCcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcCcc-------eeEEEEecc
Confidence 4899999999999999999999888766531 112267899999999872 555555543
No 89
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=94.73 E-value=0.25 Score=46.82 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=19.9
Q ss_pred eEEeeeEEeecCCceEEEEecCCCCCC
Q psy10924 202 QLFGADFLIHENYQPCLIEVNNGPGLS 228 (322)
Q Consensus 202 el~G~DfllD~~~kpwLIEVN~~P~l~ 228 (322)
+.-|+||++.++| |++||||..+.=+
T Consensus 252 GsnGVDfvl~d~g-pyViEVNPR~qGt 277 (389)
T COG2232 252 GSNGVDFVLNDKG-PYVIEVNPRIQGT 277 (389)
T ss_pred cccccceEeecCC-cEEEEecCcccch
Confidence 3449999997765 8999999766544
No 90
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=93.75 E-value=0.9 Score=42.98 Aligned_cols=55 Identities=29% Similarity=0.466 Sum_probs=41.7
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhh---CCCCCCCceeEeeccccccccCCceeeEEEEEEE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGT---LKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVI 93 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~---~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlv 93 (322)
.=++||..+|.|+|-.++++.+++.+.-+. ..+-...+.||-.+| +||+-+-+|.
T Consensus 151 PcvvKPvMSSSGkGqsvv~~~e~ve~AW~~A~~g~R~~~~RVIVE~fv---------~fd~EiTlLt 208 (394)
T COG0027 151 PCVVKPVMSSSGKGQSVVRSPEDVEKAWEYAQQGGRGGSGRVIVEEFV---------KFDFEITLLT 208 (394)
T ss_pred CeecccccccCCCCceeecCHHHHHHHHHHHHhcCCCCCCcEEEEEEe---------cceEEEEEEE
Confidence 368999999999999999999998864432 222236678888888 4787776665
No 91
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=93.72 E-value=0.16 Score=44.67 Aligned_cols=44 Identities=16% Similarity=0.273 Sum_probs=29.4
Q ss_pred CceeEEeeeEEeecCCceEEEEecCC--CCCCCCChhHHHHHHHHH
Q psy10924 199 NSFQLFGADFLIHENYQPCLIEVNNG--PGLSPTTSIIAKKTTELL 242 (322)
Q Consensus 199 ~~Fel~G~DfllD~~~kpwLIEVN~~--P~l~~~~~~~~~l~~~li 242 (322)
+..++.|+|.+...+|+-++||||.+ |-+......|.++...|+
T Consensus 152 GGlDI~~v~ai~~kdGke~Iievnds~m~L~g~~qeeDr~~I~dlV 197 (203)
T PF02750_consen 152 GGLDICAVDAIHGKDGKEYIIEVNDSSMPLIGEHQEEDRRLIADLV 197 (203)
T ss_dssp G--SEEEEEEEEETTS-EEEEEEE-TT----GGGHHHHHHHHHHHH
T ss_pred CCccEEEEEEEEcCCCCEEEEEecCCcccccchhHHHHHHHHHHHH
Confidence 45689999999999999999999965 555555566666655554
No 92
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=93.69 E-value=2 Score=42.03 Aligned_cols=46 Identities=17% Similarity=0.197 Sum_probs=35.8
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCC-CCceeEeeccc
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLT-CPRCVVQKYIE 75 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~-~~~~IvQkYI~ 75 (322)
.-|+||+.+..|.|-.++.+.+++.+......... ....+++++|.
T Consensus 152 PvIVrP~~~lGG~G~~i~~n~eel~~~~~~~l~~s~~~~vl~eesi~ 198 (400)
T COG0458 152 PVIVKPSFGLGGSGGGIAYNEEELEEIIEEGLRASPVEEVLIEESII 198 (400)
T ss_pred CEEEecCcCCCCCceeEEeCHHHHHHHHHhccccCccccceeeeeec
Confidence 48999999999999999999999998887643221 23556666666
No 93
>KOG2158|consensus
Probab=88.83 E-value=0.094 Score=51.56 Aligned_cols=52 Identities=23% Similarity=0.490 Sum_probs=48.1
Q ss_pred CCceeEEeeeEEeecCCceEEEEecCCCCCCCCChhHHHHHHHHHHHHhhchh
Q psy10924 198 KNSFQLFGADFLIHENYQPCLIEVNNGPGLSPTTSIIAKKTTELLTDMVKVVT 250 (322)
Q Consensus 198 ~~~Fel~G~DfllD~~~kpwLIEVN~~P~l~~~~~~~~~l~~~li~d~l~lv~ 250 (322)
.-||+.+|+|.+. +..++|++|+|..|++..+...+...+..++..+++..-
T Consensus 12 ~v~~~~~~~~~~~-~~~~~w~~~~~~~p~~~~~~~~~~~~~r~~~~~~l~~~~ 63 (565)
T KOG2158|consen 12 SVCFEVLGFDILL-RKLKPWLLEINRAPSFGTDQKIDYDVKRGVLLNALKLLN 63 (565)
T ss_pred eeehHhhhhhhhh-hhcccccchhhcCCCCCCCcCcchhhhhhhhhhcccccC
Confidence 4589999999999 999999999999999999999999999999999988764
No 94
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=88.70 E-value=7.3 Score=37.73 Aligned_cols=117 Identities=12% Similarity=0.141 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhcCCcceEEEeCCCCCCCCCeEEeCChhHHHHHHhhCC--------CCCCCceeEeec
Q psy10924 2 QHVFARAKHVVESVEEYNKQEMYDGTHNVWVLKPVANCSGHGIRIYRQLEDIKRAIGTLK--------NLTCPRCVVQKY 73 (322)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~pq~~~~~~~~~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~--------~~~~~~~IvQkY 73 (322)
+..++....+|..+.+.+-+|.++ +++--|+|..+|.-|-||.-+++.+++..+-.... +..-...|||+.
T Consensus 232 e~lA~~Vd~~L~kir~KY~eYgI~-e~PfViVKADaGTYGMGImtv~~~~ev~~LNrK~RnKM~~~Keg~~V~~VIiQEG 310 (403)
T TIGR02049 232 DALATAVDQVLSKTQKKYEEYGIH-TQPYVIVKADAGTYGMGIMTATSGEEVLGLNRKERNKMAKVKEGLEVSEVIIQEG 310 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCC-CCCeEEEEcCCCCCCceEEEecCHHHHHHhhhhhhhhcccccCCCccceEEEecC
Confidence 456788899999999999988885 56778999999999999999999999987544311 111467999999
Q ss_pred cccccccCCceeeEEEEEEEeeecCcEEEEe----cceEEEecCCCCCCCccc-ccccchhhh
Q psy10924 74 IEKPLLIHGVKFDLRVWYVITNIDKFKIWVY----HEGYVRFCSKPYSNILLD-EARHLTNVR 131 (322)
Q Consensus 74 I~~PlLi~grKFDiR~yvlvts~~pl~vy~y----~~g~vR~s~~~y~~~~~d-~~~HLTN~~ 131 (322)
|..-=.+++--- .|+ ||+- -.|+-|+.+..=.-.|++ ..+|..-.+
T Consensus 311 V~T~E~~~~avA-----------EPV-VYmid~~vvggfYRvh~~Rg~dENLNapG~~F~pla 361 (403)
T TIGR02049 311 VYTFEMFNEAVA-----------EPV-VYMIGRTVTGGFYRVHTGRGVDENLNAPGMHFVPLS 361 (403)
T ss_pred cceeeeeCCccc-----------Cce-EEEECCEEeEEEEEecCCCCCcccCCCCCCeeeecc
Confidence 974223333211 232 2331 367778888776666665 456655433
No 95
>PF08886 GshA: Glutamate-cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria []. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.; PDB: 3K1T_A.
Probab=87.68 E-value=2.6 Score=40.88 Aligned_cols=121 Identities=11% Similarity=0.130 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhcCCcceEEEeCCCCCCCCCeEEeCChhHHHHHHhh--------CCCCCCCceeEeec
Q psy10924 2 QHVFARAKHVVESVEEYNKQEMYDGTHNVWVLKPVANCSGHGIRIYRQLEDIKRAIGT--------LKNLTCPRCVVQKY 73 (322)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~pq~~~~~~~~~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~--------~~~~~~~~~IvQkY 73 (322)
+..++...++|..+.+.+-+|.++ +.+--|+|-.+|.-|-||..+++.+++..+-.. +.+..-...|||+.
T Consensus 235 ~~La~~Vd~lL~kir~KY~eygI~-e~PfV~VKAD~GTYGMGImtV~~~~ev~~LNrK~RnKM~~~Keg~~v~~VIIQEG 313 (404)
T PF08886_consen 235 ECLASAVDQLLAKIRKKYKEYGIK-EKPFVFVKADAGTYGMGIMTVKSGDEVLGLNRKQRNKMSVIKEGLEVSEVIIQEG 313 (404)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---S---EEEEEE-GGG-EEEEEESSGGGGSS--HHHHHHHH-SSSSS---EEEEEE-
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCC-CCceEEEEcCCCCCCceEEEecCHHHHHHHhHHHhhhhhhhcCCCccceeEEecC
Confidence 456788899999999999988885 456779999999999999999999988543221 12222568999999
Q ss_pred cccccccCCceeeEEEEEEEeeecCcEEEEecceEEEecCCCCCCCccc-ccccchhhh
Q psy10924 74 IEKPLLIHGVKFDLRVWYVITNIDKFKIWVYHEGYVRFCSKPYSNILLD-EARHLTNVR 131 (322)
Q Consensus 74 I~~PlLi~grKFDiR~yvlvts~~pl~vy~y~~g~vR~s~~~y~~~~~d-~~~HLTN~~ 131 (322)
|..--.+++---.-=+|++= -. --.|+-|+.+..=.-.|++ ..+|..-.+
T Consensus 314 V~T~E~~~~avAEPVVYmid----~~----vvggfyRvh~~rg~deNLNapGm~F~pla 364 (404)
T PF08886_consen 314 VYTFERFNDAVAEPVVYMID----RY----VVGGFYRVHTERGVDENLNAPGMHFVPLA 364 (404)
T ss_dssp ----EEETTEEEEEEEEEET----TE----EEEEEEEEES--STTTTTS--TT-EEEEE
T ss_pred cchhhhhCCccccceEEEEC----CE----EEEEEEEecCCCCCccCCCCCCCEeeecc
Confidence 98644566643333333331 11 1367888888776666775 456654433
No 96
>COG2308 Uncharacterized conserved protein [Function unknown]
Probab=86.01 E-value=1.3 Score=43.66 Aligned_cols=77 Identities=21% Similarity=0.311 Sum_probs=56.8
Q ss_pred EEEeCCCCCCCCCeEEeCCh-----hHHHHHHhhCCCCCCCceeEeeccc---cccccCC----ceeeEEEEEEEeeecC
Q psy10924 31 WVLKPVANCSGHGIRIYRQL-----EDIKRAIGTLKNLTCPRCVVQKYIE---KPLLIHG----VKFDLRVWYVITNIDK 98 (322)
Q Consensus 31 WIvKP~~~s~G~GI~~~~~~-----~~i~~~~~~~~~~~~~~~IvQkYI~---~PlLi~g----rKFDiR~yvlvts~~p 98 (322)
-++||+.++.|-|..+=..+ .++.+.+... ...||.|.-+. -|..++| |-.|+|.|++.+.
T Consensus 368 lViK~~~~~gg~~~lvGpa~s~~e~a~~~~~i~a~----p~~~IaQ~~~~lST~Pt~v~~~l~pr~vdlR~f~~~~~--- 440 (488)
T COG2308 368 LVIKPVEGSGGYGMLVGPAASKAELAAFAERIKAD----PENYIAQPVLQLSTVPTFVDGGLAPRHVDLRPFALADR--- 440 (488)
T ss_pred heEeeeccCCCCcceeccccCHHHHHHHHHHHHhC----hhhhcccccccccccceEECCeeccccccceeEEEEcC---
Confidence 57999999988887774433 3344555544 46899998765 3455554 7889999999864
Q ss_pred cEEEEecceEEEecCC
Q psy10924 99 FKIWVYHEGYVRFCSK 114 (322)
Q Consensus 99 l~vy~y~~g~vR~s~~ 114 (322)
-.+++.-.|+.|++..
T Consensus 441 ~~~~v~pGGLtRVal~ 456 (488)
T COG2308 441 DGVQVMPGGLTRVALR 456 (488)
T ss_pred CceEEcccceeeeeec
Confidence 4588889999999976
No 97
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=84.48 E-value=1.8 Score=42.46 Aligned_cols=59 Identities=29% Similarity=0.339 Sum_probs=40.8
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYV 92 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvl 92 (322)
-|+.||..|-.|.||.++..-..+. ..........+|.|+|++-| .++|+-.=|.+|++
T Consensus 309 ~yV~KPi~gREG~nV~i~~~g~~~~---~~~g~y~~~~~IyQ~~~~Lp-~f~g~~~~iGsw~v 367 (397)
T PHA02117 309 KYVSKPLLSREGNNIHIFEYGGESE---DTDGNYAEEPRVVQQLIEWG-RFDGCYPMIGVWMV 367 (397)
T ss_pred CEEeccCCCcCCCCEEEEECCeEEe---ccCCCCCCCCeEEEEccCCc-ccCCcEEEEEEEEE
Confidence 4999999999999999997633222 11122236789999999966 56776444555554
No 98
>PF07065 D123: D123; InterPro: IPR009772 This family contains a number of eukaryotic D123 proteins approximately 330 residues long. It has been shown that mutated variants of D123 exhibit temperature-dependent differences in their degradation rate [].
Probab=84.10 E-value=9.3 Score=36.09 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=21.6
Q ss_pred eeEEeeeEEeecC-CceEEEEecCCCC
Q psy10924 201 FQLFGADFLIHEN-YQPCLIEVNNGPG 226 (322)
Q Consensus 201 Fel~G~DfllD~~-~kpwLIEVN~~P~ 226 (322)
.+-|-+|+-++.+ .++||||+|.--.
T Consensus 214 ~~~~v~DVyi~~~~~~v~LID~NPf~~ 240 (299)
T PF07065_consen 214 LDNYVFDVYITRDKDKVWLIDFNPFGP 240 (299)
T ss_pred CCCEEEEEEEcCCCCeEEEEEecCCcc
Confidence 3567899999999 9999999997443
No 99
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=82.93 E-value=1.6 Score=41.86 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=20.2
Q ss_pred CceeEEeeeEEeecCCceEEEEecCCCC
Q psy10924 199 NSFQLFGADFLIHENYQPCLIEVNNGPG 226 (322)
Q Consensus 199 ~~Fel~G~DfllD~~~kpwLIEVN~~P~ 226 (322)
....++|+||..|.+|+.|+||.|++..
T Consensus 66 ~~~~~~g~Dl~r~~dG~w~VleDn~~~P 93 (330)
T PF04174_consen 66 VRLHFYGADLVRDPDGRWRVLEDNTRAP 93 (330)
T ss_dssp -S-SEEEEEEEE-SSS-EEEEEEE-SS-
T ss_pred eEEEEEEEeeeECCCCCEEEEEecCCCC
Confidence 3467999999999999999999998643
No 100
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=75.16 E-value=4.6 Score=41.93 Aligned_cols=84 Identities=13% Similarity=0.226 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhhhhh------hh--cC--CcceEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccc
Q psy10924 6 ARAKHVVESVEEYNKQE------MY--DG--THNVWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIE 75 (322)
Q Consensus 6 ~~~~~~l~~~~~~~pq~------~~--~~--~~~~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~ 75 (322)
-.-|.+|.-|=+.+|.. .. +. ...-|+.||..|-.|.+|.++..-..+.... ........+|.|+|.+
T Consensus 495 lsNKaiLplLW~l~p~Hp~LLpayfe~d~~l~~~~yV~KPi~GREG~nV~i~~~~g~~~~~~--~g~y~~~~~IyQ~~~~ 572 (619)
T PRK10507 495 PGNKAILPVLWSLFPHHRYLLDTDFTVNDELVKTGYAVKPIAGRCGSNIDLVSHQEEVLDKT--SGKFAEQKNIYQQLWC 572 (619)
T ss_pred cccHHHHHHHHHhCCCCcccccccccCCcccccCCeEeccCCCcCCCCEEEEeCCCcEeecc--CCCCCCCCeEEEEecc
Confidence 34456666666555541 11 11 2234999999999999999997632222111 1223367899999999
Q ss_pred cccccCCceeeEEEEEE
Q psy10924 76 KPLLIHGVKFDLRVWYV 92 (322)
Q Consensus 76 ~PlLi~grKFDiR~yvl 92 (322)
-| .++|.-.=|..|++
T Consensus 573 LP-~f~~~~~~iGsw~v 588 (619)
T PRK10507 573 LP-KVDGKYIQVCTFTV 588 (619)
T ss_pred Cc-ccCCCEEEEEEEEE
Confidence 66 45655444555544
No 101
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=65.29 E-value=1e+02 Score=29.61 Aligned_cols=48 Identities=15% Similarity=0.197 Sum_probs=36.2
Q ss_pred cceEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCC---C---CCCceeEeeccc
Q psy10924 28 HNVWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN---L---TCPRCVVQKYIE 75 (322)
Q Consensus 28 ~~~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~---~---~~~~~IvQkYI~ 75 (322)
+..-|||+...-+|||-++.++.+++.+..+.-.. . .-..+.+|+||-
T Consensus 150 dr~VIVK~pgAkggRGyFiA~s~eef~ek~e~l~~~gvi~~edlkna~IeEYv~ 203 (361)
T COG1759 150 DRPVIVKLPGAKGGRGYFIASSPEEFYEKAERLLKRGVITEEDLKNARIEEYVV 203 (361)
T ss_pred CCceEEecCCccCCceEEEEcCHHHHHHHHHHHHHcCCcchhhhhhceeeEEee
Confidence 45799999888889999999999888766554110 0 034688999997
No 102
>KOG3895|consensus
Probab=63.82 E-value=51 Score=31.94 Aligned_cols=52 Identities=13% Similarity=0.155 Sum_probs=40.4
Q ss_pred CceeEEeeeEEeecCCceEEEEecC--CCCCCCCChhHHHHHHHHHHHHhhchh
Q psy10924 199 NSFQLFGADFLIHENYQPCLIEVNN--GPGLSPTTSIIAKKTTELLTDMVKVVT 250 (322)
Q Consensus 199 ~~Fel~G~DfllD~~~kpwLIEVN~--~P~l~~~~~~~~~l~~~li~d~l~lv~ 250 (322)
+...+-.+|.+...+|+-+++|||. -|-+......++++...|+...+.-++
T Consensus 341 GgldICav~alhsKdGrd~i~eV~d~smpliGeh~eeDrql~~~Lvvskmaq~l 394 (488)
T KOG3895|consen 341 GGLDICAVKALHSKDGRDYIIEVMDSSMPLIGEHQEEDRQLISELVVSKMAQLL 394 (488)
T ss_pred CCcceEEeeeeecccchhheeeeccccccccccchhHHHHHHHHHHHHHhhhcc
Confidence 3456778999999999999999996 477777777888887777766555444
No 103
>COG0754 Gsp Glutathionylspermidine synthase [Amino acid transport and metabolism]
Probab=60.48 E-value=5.8 Score=38.21 Aligned_cols=45 Identities=16% Similarity=0.286 Sum_probs=34.7
Q ss_pred EEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccc
Q psy10924 31 WVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKP 77 (322)
Q Consensus 31 WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~P 77 (322)
|+.||..|-.|.+|.++.+.......... ......+|.|+|.+-|
T Consensus 299 yv~KPl~gREGaNv~i~~~~~~~~~~~~G--~Yg~eg~IyQe~~~Lp 343 (387)
T COG0754 299 YVRKPLFGREGANVSIFEDAGKVLDKADG--PYGEEGMIYQEFYPLP 343 (387)
T ss_pred hhccccccccCCCeeEEecCCceeecCCC--CccccchhhhhhccCc
Confidence 99999999999999999875554433322 1236789999999965
No 104
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=57.05 E-value=8.2 Score=37.00 Aligned_cols=39 Identities=28% Similarity=0.381 Sum_probs=19.4
Q ss_pred ceEEEeCCCCCCCCCeEEeCChh----HHHHHHhhCCCCCCCceeEe
Q psy10924 29 NVWVLKPVANCSGHGIRIYRQLE----DIKRAIGTLKNLTCPRCVVQ 71 (322)
Q Consensus 29 ~~WIvKP~~~s~G~GI~~~~~~~----~i~~~~~~~~~~~~~~~IvQ 71 (322)
.-|++||+.++.|+|+.+=.+.+ ++.+.+... ...||+|
T Consensus 288 ~~lvvKp~~g~gg~~~~~G~~~s~e~~~~~~~I~~~----P~~yVAQ 330 (330)
T PF04174_consen 288 DELVVKPADGYGGKGVYIGPKLSAERRALRAEILAR----PHRYVAQ 330 (330)
T ss_dssp GGEEEEE--------EEEGGG--HHHHHHHHHHHHS----GGGEEEE
T ss_pred hhcEEEecCCCCCCcceeCCcCCHHHHHHHHHHHhC----ccCCccC
Confidence 45999999999999999866554 344444433 3489988
No 105
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=55.45 E-value=14 Score=30.35 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=22.5
Q ss_pred eEEeeeEEeecCCceEEEEecCCCCCC
Q psy10924 202 QLFGADFLIHENYQPCLIEVNNGPGLS 228 (322)
Q Consensus 202 el~G~DfllD~~~kpwLIEVN~~P~l~ 228 (322)
.-|.+||.+.++|+..|||+|..=+..
T Consensus 93 ~~~vlDvg~~~~G~~~lVE~N~~~~sG 119 (130)
T PF14243_consen 93 PAYVLDVGVTDDGGWALVEANDGWSSG 119 (130)
T ss_pred CeEEEEEEEeCCCCEEEEEecCccccc
Confidence 567999999999999999999754443
No 106
>PF04556 DpnII: DpnII restriction endonuclease; InterPro: IPR007637 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry is found in type II restriction enzymes such as DpmII (3.1.21.4 from EC), which recognises the double-stranded unmethylated sequence GATC and cleave before G-1 [], where it encompasess the full length of the protein. It is also found in a number of proteins of unknown function, where it is located adjacent to a DNA adenine-specific methyltransferase domain (IPR012327 from INTERPRO).; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=50.77 E-value=13 Score=34.80 Aligned_cols=23 Identities=35% Similarity=0.271 Sum_probs=19.9
Q ss_pred EeeeEEeecCCceEEEEecCCCC
Q psy10924 204 FGADFLIHENYQPCLIEVNNGPG 226 (322)
Q Consensus 204 ~G~DfllD~~~kpwLIEVN~~P~ 226 (322)
=.+||++..+.+.|+||+|.--+
T Consensus 196 KrFDFvi~~~~k~y~IE~NFY~~ 218 (286)
T PF04556_consen 196 KRFDFVIKTNKKIYLIETNFYGS 218 (286)
T ss_pred eEEEEEEEcCCEEEEEEEeeecC
Confidence 36899999999999999997544
No 107
>COG2308 Uncharacterized conserved protein [Function unknown]
Probab=43.41 E-value=44 Score=33.31 Aligned_cols=50 Identities=10% Similarity=0.111 Sum_probs=34.5
Q ss_pred CCCceeEEeeeEEeecCCceEEEEecC-CCCCCCCChhHHHHHHHHHHHHh
Q psy10924 197 RKNSFQLFGADFLIHENYQPCLIEVNN-GPGLSPTTSIIAKKTTELLTDMV 246 (322)
Q Consensus 197 ~~~~Fel~G~DfllD~~~kpwLIEVN~-~P~l~~~~~~~~~l~~~li~d~l 246 (322)
........|+|++-|.+|+.|+||=|. .||=....-...+...+++-|++
T Consensus 141 ~g~y~H~~g~dl~R~~dG~~~VLeDn~r~PSGvsY~LenR~~~~r~~Pely 191 (488)
T COG2308 141 GGHYLHVCGTDLIRDPDGNFQVLEDNLRAPSGVSYALENRRAMARAFPELY 191 (488)
T ss_pred CceEEEEeeeheeECCCCCEEEecccCcCCCchhHHHHhHHHHHHHChHHH
Confidence 445678899999999999999999997 57765544334444444444433
No 108
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=41.55 E-value=86 Score=30.44 Aligned_cols=56 Identities=16% Similarity=0.278 Sum_probs=34.9
Q ss_pred eEEEeCC--CCCCCC--CeEEeCChhHHHHHHhhCCC------------CCCCceeEeeccccccccCCceeeEEEE
Q psy10924 30 VWVLKPV--ANCSGH--GIRIYRQLEDIKRAIGTLKN------------LTCPRCVVQKYIEKPLLIHGVKFDLRVW 90 (322)
Q Consensus 30 ~WIvKP~--~~s~G~--GI~~~~~~~~i~~~~~~~~~------------~~~~~~IvQkYI~~PlLi~grKFDiR~y 90 (322)
.+++||. .+.+|+ |+.+.++.+++.+....-.. .....++||+++.- |+-+-+-+.
T Consensus 42 PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVEe~v~~-----g~E~~v~i~ 113 (386)
T TIGR01016 42 PVVVKAQVHAGGRGKAGGVKVAKSKEEARAAAEKLLGKELVTNQTDPLGQPVNKILIEEATDI-----DKEYYLSIV 113 (386)
T ss_pred cEEEEecccCCCCccCceEEEeCCHHHHHHHHHHHhccceeecccCCCCCEeeEEEEEECccC-----CceEEEEEE
Confidence 5999998 344554 89999998888776543110 00135888888852 565544433
No 109
>PF13635 DUF4143: Domain of unknown function (DUF4143)
Probab=36.93 E-value=34 Score=25.83 Aligned_cols=19 Identities=32% Similarity=0.359 Sum_probs=17.1
Q ss_pred eeeEEeecCCceEEEEecC
Q psy10924 205 GADFLIHENYQPCLIEVNN 223 (322)
Q Consensus 205 G~DfllD~~~kpwLIEVN~ 223 (322)
-+||++...++.+.|||-.
T Consensus 71 EVDfv~~~~~~~~~IEVK~ 89 (90)
T PF13635_consen 71 EVDFVIENGGRIIPIEVKY 89 (90)
T ss_pred EEEEEEEeCCEEEEEEEEE
Confidence 6799999999999999965
No 110
>KOG2983|consensus
Probab=32.41 E-value=1.2e+02 Score=28.24 Aligned_cols=50 Identities=4% Similarity=0.145 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHH-HhhhhhhhcCCc-ceEEEeCCCCCCCCCeEEeCChhHHHHHHhh
Q psy10924 3 HVFARAKHVVESVE-EYNKQEMYDGTH-NVWVLKPVANCSGHGIRIYRQLEDIKRAIGT 59 (322)
Q Consensus 3 ~~~~~~~~~l~~~~-~~~pq~~~~~~~-~~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~ 59 (322)
++.+..++-++.|. +..|.+....++ ..||.=-.. .-++..++|.-.+++
T Consensus 86 El~qki~eaineLGgaV~PKLNWSaPrDA~WI~pn~s-------lkCt~~nei~LLfks 137 (334)
T KOG2983|consen 86 ELEQKIREAINELGGAVIPKLNWSAPRDAAWISPNQS-------LKCTTFNEIALLFKS 137 (334)
T ss_pred HHHHHHHHHHHHccceecccccCCCCCcceeeccCCC-------cccccHHHHHHHHhc
Confidence 45666777778887 678877776655 678864222 234667777766653
No 111
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=31.03 E-value=2.6e+02 Score=24.74 Aligned_cols=31 Identities=26% Similarity=0.378 Sum_probs=24.2
Q ss_pred ceEEEeCCCCCCCC----CeEEeCChhHHHHHHhh
Q psy10924 29 NVWVLKPVANCSGH----GIRIYRQLEDIKRAIGT 59 (322)
Q Consensus 29 ~~WIvKP~~~s~G~----GI~~~~~~~~i~~~~~~ 59 (322)
+.|++||-....|| ||.++++.++...+...
T Consensus 40 ~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~ 74 (202)
T PF08442_consen 40 KPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKE 74 (202)
T ss_dssp SSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHT
T ss_pred CcEEEEEeEeecCcccCCceeecCCHHHHHHHHHH
Confidence 46999997755444 79999999999988775
No 112
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=29.57 E-value=47 Score=32.74 Aligned_cols=27 Identities=30% Similarity=0.555 Sum_probs=22.1
Q ss_pred eEEe-eeEEeecCCceEEEEecC-CCCCC
Q psy10924 202 QLFG-ADFLIHENYQPCLIEVNN-GPGLS 228 (322)
Q Consensus 202 el~G-~DfllD~~~kpwLIEVN~-~P~l~ 228 (322)
.+|| |||..|.++.+-|||.|+ .|..-
T Consensus 106 slyGRfDfa~dg~g~~KllE~NADTPT~L 134 (397)
T PHA02117 106 GLYGRFDLIMTPNGGPKMLEYNADTPTIL 134 (397)
T ss_pred cEEEEEEEEEcCCCCeEEEEecCCCCchH
Confidence 4555 899999999999999997 56654
No 113
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=29.47 E-value=1.2e+02 Score=26.36 Aligned_cols=59 Identities=17% Similarity=0.338 Sum_probs=38.0
Q ss_pred cCCcceEEEeCCC-CCCCCCeEEeCC-------hhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEE
Q psy10924 25 DGTHNVWVLKPVA-NCSGHGIRIYRQ-------LEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRV 89 (322)
Q Consensus 25 ~~~~~~WIvKP~~-~s~G~GI~~~~~-------~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~ 89 (322)
.+...+||+||-. .=+||-+.++.+ ++.+.+++.... .++.-+=-.++.| .+|+.||++
T Consensus 76 ~ssg~v~i~kDld~di~grdVLiVeDIiDsG~TLs~i~~~l~~r~---a~sv~i~tLldK~---~~r~~~i~~ 142 (178)
T COG0634 76 SSSGEVKILKDLDEDIKGRDVLIVEDIIDSGLTLSKVRDLLKERG---AKSVRIATLLDKP---ERRKVDIEA 142 (178)
T ss_pred ccCCceEEecccccCCCCCeEEEEecccccChhHHHHHHHHHhCC---CCeEEEEEEeeCc---ccccCCCCc
Confidence 4456799999955 459999999875 456666666433 3344444445544 466777665
No 114
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=29.09 E-value=58 Score=18.25 Aligned_cols=13 Identities=0% Similarity=-0.110 Sum_probs=10.3
Q ss_pred eeEEeecCCceEE
Q psy10924 206 ADFLIHENYQPCL 218 (322)
Q Consensus 206 ~DfllD~~~kpwL 218 (322)
.++..|.+++.|+
T Consensus 8 ~~i~~D~~G~lWi 20 (24)
T PF07494_consen 8 YSIYEDSDGNLWI 20 (24)
T ss_dssp EEEEE-TTSCEEE
T ss_pred EEEEEcCCcCEEE
Confidence 4788999999997
No 115
>PF13020 DUF3883: Domain of unknown function (DUF3883)
Probab=28.78 E-value=50 Score=24.98 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=20.6
Q ss_pred eEEeeeEEeec-CCceEEEEecCCC
Q psy10924 202 QLFGADFLIHE-NYQPCLIEVNNGP 225 (322)
Q Consensus 202 el~G~DfllD~-~~kpwLIEVN~~P 225 (322)
.-.|+||.+.+ ++...+|||-+.-
T Consensus 27 ~~~gyDi~~~~~~g~~~~IEVKst~ 51 (91)
T PF13020_consen 27 DGLGYDIKSFDEDGEERFIEVKSTT 51 (91)
T ss_pred CCCCeEEEEEeCCCCEEEEEEEEEe
Confidence 34699999998 8999999999866
No 116
>PHA02762 hypothetical protein; Provisional
Probab=27.62 E-value=62 Score=22.39 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=19.4
Q ss_pred eEEeecCCceEEEEecCCCCCCC
Q psy10924 207 DFLIHENYQPCLIEVNNGPGLSP 229 (322)
Q Consensus 207 DfllD~~~kpwLIEVN~~P~l~~ 229 (322)
-+++|.++.-.+||+|.+|--+-
T Consensus 2 ki~idn~fgnlii~~~rs~~ks~ 24 (62)
T PHA02762 2 KILIDNDFGNLIIEFKRNVEKSF 24 (62)
T ss_pred eEEecCCCccEEEEEecCccccc
Confidence 47899999999999999987653
No 117
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=26.39 E-value=1.5e+02 Score=26.88 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=24.4
Q ss_pred eeEEeeeEEeecCCceEEEEecCCCCCCC
Q psy10924 201 FQLFGADFLIHENYQPCLIEVNNGPGLSP 229 (322)
Q Consensus 201 Fel~G~DfllD~~~kpwLIEVN~~P~l~~ 229 (322)
|....+||... ++++++=|+-..|+-..
T Consensus 195 f~fvRVDlY~~-~~~iyFGElTf~p~~G~ 222 (239)
T PF14305_consen 195 FPFVRVDLYNV-DGKIYFGELTFTPGAGF 222 (239)
T ss_pred CCEEEEEEEEe-CCcEEEEeeecCCCCcC
Confidence 88899999875 77899999999998874
No 118
>cd00228 eu-GS Eukaryotic Glutathione Synthetase (eu-GS); catalyses the production of glutathione from gamma-glutamylcysteine and glycine in an ATP-dependent manner. Belongs to the ATP-grasp superfamily.
Probab=26.20 E-value=1.7e+02 Score=29.56 Aligned_cols=46 Identities=17% Similarity=0.294 Sum_probs=35.9
Q ss_pred CCceeEEeeeEEeecC---CceEEEEecC-CCCCCCCChhHHHHHHHHHH
Q psy10924 198 KNSFQLFGADFLIHEN---YQPCLIEVNN-GPGLSPTTSIIAKKTTELLT 243 (322)
Q Consensus 198 ~~~Fel~G~DfllD~~---~kpwLIEVN~-~P~l~~~~~~~~~l~~~li~ 243 (322)
+-...++.=|+|+|.. ..+..+|+|+ +=+|..-+.....++..++.
T Consensus 113 ~~~Lgl~RSDYMl~~~~~~~~~kQVE~NTIS~sfg~ls~~v~~lH~~l~~ 162 (471)
T cd00228 113 PVRLGIFRSDYMFDEKDGTKGLKQIEINTISSSFGGLSSRVTELHRYVLS 162 (471)
T ss_pred ceEEeeeehhcccCCccCCCceeEEEEeeeeeccchHHHHHHHHHHHHHH
Confidence 3567899999999987 5789999997 67777777766777766653
No 119
>COG0754 Gsp Glutathionylspermidine synthase [Amino acid transport and metabolism]
Probab=25.06 E-value=63 Score=31.32 Aligned_cols=28 Identities=25% Similarity=0.258 Sum_probs=22.5
Q ss_pred eEEe-eeEEeecCCceEEEEecC-CCCCCC
Q psy10924 202 QLFG-ADFLIHENYQPCLIEVNN-GPGLSP 229 (322)
Q Consensus 202 el~G-~DfllD~~~kpwLIEVN~-~P~l~~ 229 (322)
.+|| +||..|.+|++-|||.|+ .|..-.
T Consensus 97 sLygRfDl~~dg~g~iKLlEyNADTPTsl~ 126 (387)
T COG0754 97 SLYGRFDLAYDGDGPIKLLEYNADTPTSLY 126 (387)
T ss_pred ceeeeeEEEecCCCCeEEEEecCCCchHHH
Confidence 4444 899999999999999997 566543
No 120
>COG5321 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.95 E-value=59 Score=26.96 Aligned_cols=52 Identities=13% Similarity=0.111 Sum_probs=28.3
Q ss_pred EeecCCceEEEEecCC-CCCCCCChhHHHHHHHHHHHHhhchhcCCCCCCCCCCCc
Q psy10924 209 LIHENYQPCLIEVNNG-PGLSPTTSIIAKKTTELLTDMVKVVTAERNPLSSFQNSV 263 (322)
Q Consensus 209 llD~~~kpwLIEVN~~-P~l~~~~~~~~~l~~~li~d~l~lv~d~~~p~~~~~~~~ 263 (322)
.+..+|.+|+|||.++ -+|..+.+.- -..+.-|.|-....+..|..-++..|
T Consensus 55 als~kGeiwIiEiKssiEDfrvDrKWp---dYr~~cDr~fFAthp~vP~~IfPeec 107 (164)
T COG5321 55 ALSPKGEIWIIEIKSSIEDFRVDRKWP---DYRLHCDRLFFATHPSVPDEIFPEEC 107 (164)
T ss_pred eecCCCcEEEEEeecchhhhcccccCc---chhhhchheeeeccCCCccccCcccC
Confidence 3678999999999875 2222222211 12334455555556666544444433
No 121
>PF03749 SfsA: Sugar fermentation stimulation protein; InterPro: IPR005224 The sugar fermentation stimulation protein is a probable regulatory factor involved in maltose metabolism. It contains a putative DNA-binding domain, and was isolated as a gene which enabled Escherichia coli W3110 (strain MK2001) to use maltose [].
Probab=21.76 E-value=76 Score=28.47 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=20.6
Q ss_pred ceeEEeeeEEeecCCceEEEEecCC
Q psy10924 200 SFQLFGADFLIHENYQPCLIEVNNG 224 (322)
Q Consensus 200 ~Fel~G~DfllD~~~kpwLIEVN~~ 224 (322)
.++--.+||++++++..++|||-+.
T Consensus 100 ~~g~sR~Dfll~~~~~~~~vEVKsv 124 (215)
T PF03749_consen 100 KYGNSRFDFLLEDNGGKCYVEVKSV 124 (215)
T ss_pred eeCCccEEEEEEcCCCCEEEEEeee
Confidence 3455569999999989999999875
No 122
>PF13592 HTH_33: Winged helix-turn helix
Probab=21.37 E-value=1.3e+02 Score=20.86 Aligned_cols=26 Identities=12% Similarity=0.303 Sum_probs=19.8
Q ss_pred CCccchHHHHHHHHHhcCChhhHHHH
Q psy10924 148 ELMWDFKQLRDYFTKNMNLPRKWDMI 173 (322)
Q Consensus 148 ~~~ws~~~~~~~L~~~~g~~~~~~~i 173 (322)
+..|+...+..++.+.+|....-..+
T Consensus 2 ~~~wt~~~i~~~I~~~fgv~ys~~~v 27 (60)
T PF13592_consen 2 GGRWTLKEIAAYIEEEFGVKYSPSGV 27 (60)
T ss_pred CCcccHHHHHHHHHHHHCCEEcHHHH
Confidence 56799999999999888876544444
No 123
>PF08972 DUF1902: Domain of unknown function (DUF1902); InterPro: IPR015066 Members of these prokaryotic proteins adopt a fold consisting of one alpha-helix and four beta-strands. Their function has not, as yet, been elucidated []. ; PDB: 1WV8_A.
Probab=21.32 E-value=2.9e+02 Score=19.18 Aligned_cols=44 Identities=11% Similarity=0.246 Sum_probs=28.2
Q ss_pred eeeEEeecCCceEEEEecCCCCCCCCChhH---HHHHHHHHHHHhhc
Q psy10924 205 GADFLIHENYQPCLIEVNNGPGLSPTTSII---AKKTTELLTDMVKV 248 (322)
Q Consensus 205 G~DfllD~~~kpwLIEVN~~P~l~~~~~~~---~~l~~~li~d~l~l 248 (322)
-+...-|++-.+|.-+...-|++....+.. ....+.|+.+++.+
T Consensus 2 ~I~a~wD~EA~VWvA~s~dvpGLvtEA~Tle~L~~kl~~~ipeLLel 48 (54)
T PF08972_consen 2 TIRAFWDEEAGVWVATSDDVPGLVTEADTLEELIEKLRVMIPELLEL 48 (54)
T ss_dssp EEEEEEETTTTEEEEE-SSSTT---EESSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCEEEEecCCCccceecCccHHHHHHHHHHHHHHHHHh
Confidence 456778999999999999999997654433 33455666666543
No 124
>PF06319 DUF1052: Protein of unknown function (DUF1052); InterPro: IPR009394 This entry is represented by Ralstonia phage RSL1, Orf212. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial proteins of unknown function.; PDB: 3DNX_A.
Probab=21.16 E-value=83 Score=26.81 Aligned_cols=54 Identities=9% Similarity=0.083 Sum_probs=24.0
Q ss_pred eeeEE-eecCCceEEEEecCC-CCCCCCChhHHHHHHHHHHHHhhchhcCCCCCCCCCC
Q psy10924 205 GADFL-IHENYQPCLIEVNNG-PGLSPTTSIIAKKTTELLTDMVKVVTAERNPLSSFQN 261 (322)
Q Consensus 205 G~Dfl-lD~~~kpwLIEVN~~-P~l~~~~~~~~~l~~~li~d~l~lv~d~~~p~~~~~~ 261 (322)
.+|+| ++.+|.+|++||-++ .+|..+.+... ..-.-|-|-.+++..+|..-++.
T Consensus 50 RaDv~al~~kGeI~ivEIKSs~~DF~~D~KW~d---Y~~~CDRfyfAv~~~~p~e~lP~ 105 (157)
T PF06319_consen 50 RADVMALGPKGEIWIVEIKSSRADFRSDRKWPD---YLDWCDRFYFAVPPDFPQELLPD 105 (157)
T ss_dssp -EEEEEE-TT--EEEEEE-SSHHHHHHTTTGGG---GGGG-SEEEEEE-TTS-GGGS-T
T ss_pred eEEEEEECCCCeEEEEEEEcCHHHhhccCcchH---HHHhhceeEEecCCCCChhhCCC
Confidence 56765 678999999999975 33333322211 11123444456677776554443
Done!