Query psy10924
Match_columns 322
No_of_seqs 192 out of 1256
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 21:59:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10924.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10924hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tig_A TTL protein; ATP-grAsp, 100.0 5.6E-54 1.9E-58 410.2 19.4 229 8-259 131-367 (380)
2 4fu0_A D-alanine--D-alanine li 99.2 3E-10 1E-14 107.8 14.9 167 30-253 179-351 (357)
3 1i7n_A Synapsin II; synapse, p 99.1 2.6E-10 8.9E-15 106.4 11.8 146 29-244 153-302 (309)
4 4eg0_A D-alanine--D-alanine li 99.1 8E-10 2.7E-14 102.9 14.4 145 30-233 148-292 (317)
5 3se7_A VANA; alpha-beta struct 99.1 3.4E-09 1.1E-13 100.0 17.5 152 30-233 167-318 (346)
6 1pk8_A RAT synapsin I; ATP bin 99.1 6.7E-10 2.3E-14 107.1 11.6 147 29-245 265-415 (422)
7 2p0a_A Synapsin-3, synapsin II 99.1 5.4E-10 1.9E-14 105.6 10.7 149 29-247 170-322 (344)
8 1e4e_A Vancomycin/teicoplanin 99.0 9.2E-09 3.2E-13 96.7 18.6 150 30-231 167-316 (343)
9 3tqt_A D-alanine--D-alanine li 99.0 5E-09 1.7E-13 100.2 16.3 146 31-233 183-329 (372)
10 2i87_A D-alanine-D-alanine lig 99.0 6.3E-09 2.1E-13 98.8 16.4 145 30-231 173-317 (364)
11 2fb9_A D-alanine:D-alanine lig 99.0 9.5E-09 3.3E-13 96.0 15.9 55 30-93 152-207 (322)
12 1iow_A DD-ligase, DDLB, D-ALA\ 99.0 6.6E-09 2.3E-13 95.3 14.3 142 30-231 140-281 (306)
13 3e5n_A D-alanine-D-alanine lig 99.0 1.1E-08 3.8E-13 98.2 15.9 165 30-250 200-370 (386)
14 3i12_A D-alanine-D-alanine lig 98.9 2.4E-08 8.3E-13 94.9 16.9 148 30-233 181-328 (364)
15 3k3p_A D-alanine--D-alanine li 98.9 1.1E-08 3.6E-13 98.3 14.4 147 30-233 203-349 (383)
16 2r85_A PURP protein PF1517; AT 98.9 9.3E-09 3.2E-13 95.5 12.6 54 29-88 127-184 (334)
17 2q7d_A Inositol-tetrakisphosph 98.9 3.3E-08 1.1E-12 93.6 15.3 152 27-234 161-320 (346)
18 1ehi_A LMDDL2, D-alanine:D-lac 98.9 6.2E-08 2.1E-12 92.5 16.6 150 30-231 176-327 (377)
19 3r5x_A D-alanine--D-alanine li 98.9 6.2E-08 2.1E-12 89.2 16.1 54 30-92 135-188 (307)
20 3lwb_A D-alanine--D-alanine li 98.8 4.4E-08 1.5E-12 93.5 14.5 166 30-251 190-367 (373)
21 2pvp_A D-alanine-D-alanine lig 98.8 4.2E-08 1.4E-12 93.5 13.1 56 29-91 186-243 (367)
22 1z2n_X Inositol 1,3,4-trisphos 98.7 4E-08 1.4E-12 91.2 10.7 50 29-92 136-188 (324)
23 1uc8_A LYSX, lysine biosynthes 98.7 4E-09 1.4E-13 95.3 3.6 57 30-92 125-184 (280)
24 3k5i_A Phosphoribosyl-aminoimi 98.7 7E-07 2.4E-11 85.9 18.0 55 30-94 162-217 (403)
25 4e4t_A Phosphoribosylaminoimid 98.7 4.9E-07 1.7E-11 87.6 16.8 54 30-93 173-227 (419)
26 3q2o_A Phosphoribosylaminoimid 98.7 5.8E-07 2E-11 85.8 17.0 55 30-94 149-204 (389)
27 3vot_A L-amino acid ligase, BL 98.6 7.1E-07 2.4E-11 86.1 16.3 55 30-90 147-211 (425)
28 1gsa_A Glutathione synthetase; 98.6 5.2E-07 1.8E-11 82.6 13.2 58 30-92 156-214 (316)
29 3ax6_A Phosphoribosylaminoimid 98.6 2.4E-07 8.3E-12 88.0 11.1 133 29-229 133-266 (380)
30 3ouz_A Biotin carboxylase; str 98.5 1.8E-06 6.2E-11 83.9 15.9 59 30-95 158-221 (446)
31 4dim_A Phosphoribosylglycinami 98.5 2.6E-06 8.8E-11 81.3 16.7 56 30-91 146-202 (403)
32 2vpq_A Acetyl-COA carboxylase; 98.5 3E-06 1E-10 82.3 16.0 58 30-94 153-215 (451)
33 3mjf_A Phosphoribosylamine--gl 98.5 2.6E-06 8.8E-11 82.7 14.9 56 30-93 144-204 (431)
34 2yw2_A Phosphoribosylamine--gl 98.5 1.2E-06 4E-11 84.4 12.4 46 30-75 139-189 (424)
35 1kjq_A GART 2, phosphoribosylg 98.4 5E-06 1.7E-10 78.9 16.5 58 30-94 150-210 (391)
36 3orq_A N5-carboxyaminoimidazol 98.4 2.1E-06 7.3E-11 81.7 13.8 55 30-94 147-202 (377)
37 2z04_A Phosphoribosylaminoimid 98.4 2.8E-07 9.7E-12 87.0 7.6 56 30-94 128-184 (365)
38 3aw8_A PURK, phosphoribosylami 98.4 5.5E-06 1.9E-10 78.2 16.5 56 29-94 132-188 (369)
39 1ulz_A Pyruvate carboxylase N- 98.4 2.3E-06 7.8E-11 83.2 13.9 58 30-94 153-215 (451)
40 2ip4_A PURD, phosphoribosylami 98.4 3.2E-06 1.1E-10 81.3 14.6 56 30-93 138-194 (417)
41 3lp8_A Phosphoribosylamine-gly 98.4 2.2E-06 7.5E-11 83.5 13.3 56 30-93 160-220 (442)
42 2yrx_A Phosphoribosylglycinami 98.4 4.2E-06 1.4E-10 81.4 15.3 56 30-93 160-220 (451)
43 3glk_A Acetyl-COA carboxylase 98.4 5.6E-06 1.9E-10 82.7 16.3 143 30-235 230-373 (540)
44 1vkz_A Phosphoribosylamine--gl 98.4 6.8E-06 2.3E-10 79.0 16.2 147 29-229 142-294 (412)
45 2xcl_A Phosphoribosylamine--gl 98.4 3.1E-06 1.1E-10 81.4 13.4 56 30-93 139-199 (422)
46 3ln6_A Glutathione biosynthesi 98.4 5.6E-07 1.9E-11 93.2 8.3 57 28-93 520-579 (750)
47 3jrx_A Acetyl-COA carboxylase 98.4 6.5E-06 2.2E-10 83.0 15.7 142 30-235 246-389 (587)
48 2dwc_A PH0318, 433AA long hypo 98.3 6.6E-06 2.3E-10 79.4 14.5 57 30-93 158-217 (433)
49 2qk4_A Trifunctional purine bi 98.3 1.1E-05 3.6E-10 78.5 15.1 55 31-93 167-226 (452)
50 3df7_A Putative ATP-grAsp supe 98.3 9.8E-07 3.3E-11 81.8 7.2 47 25-93 130-176 (305)
51 2w70_A Biotin carboxylase; lig 98.3 1.1E-05 3.9E-10 78.2 14.3 58 30-94 155-217 (449)
52 1w96_A ACC, acetyl-coenzyme A 98.2 1.1E-05 3.6E-10 80.9 14.0 58 30-94 236-294 (554)
53 2dzd_A Pyruvate carboxylase; b 98.2 2.3E-05 7.9E-10 76.2 15.4 58 30-94 159-221 (461)
54 2pn1_A Carbamoylphosphate synt 98.2 6.5E-06 2.2E-10 76.2 10.6 51 29-90 150-200 (331)
55 3ln7_A Glutathione biosynthesi 98.2 4.1E-06 1.4E-10 86.8 9.9 56 28-92 525-584 (757)
56 3t7a_A Inositol pyrophosphate 98.2 3.5E-06 1.2E-10 77.8 7.9 59 176-247 253-311 (330)
57 3vmm_A Alanine-anticapsin liga 98.2 1.7E-05 6E-10 77.9 13.2 48 30-77 176-234 (474)
58 1a9x_A Carbamoyl phosphate syn 98.0 0.0001 3.6E-09 79.2 15.4 46 30-75 711-757 (1073)
59 3u9t_A MCC alpha, methylcroton 98.0 6.8E-06 2.3E-10 84.2 5.9 158 30-250 180-343 (675)
60 3n6r_A Propionyl-COA carboxyla 97.9 6.9E-06 2.4E-10 84.3 5.7 159 30-251 154-318 (681)
61 3eth_A Phosphoribosylaminoimid 97.9 0.00013 4.3E-09 69.1 13.6 39 30-75 116-157 (355)
62 1a9x_A Carbamoyl phosphate syn 97.9 0.00022 7.4E-09 76.8 15.9 58 30-94 165-223 (1073)
63 3hbl_A Pyruvate carboxylase; T 97.8 9.1E-05 3.1E-09 80.1 12.1 58 30-94 157-219 (1150)
64 2qf7_A Pyruvate carboxylase pr 97.7 8.8E-05 3E-09 80.3 9.4 58 30-94 173-235 (1165)
65 4ffl_A PYLC; amino acid, biosy 97.7 0.00014 4.7E-09 68.4 9.1 40 28-75 125-164 (363)
66 2r7k_A 5-formaminoimidazole-4- 97.7 0.00018 6E-09 68.3 9.9 47 29-75 151-203 (361)
67 3va7_A KLLA0E08119P; carboxyla 97.6 0.00014 4.9E-09 79.0 9.5 58 30-94 182-244 (1236)
68 2pbz_A Hypothetical protein; N 97.0 0.00048 1.7E-08 64.2 4.8 42 29-75 126-167 (320)
69 3n6x_A Putative glutathionylsp 96.9 0.00095 3.2E-08 65.3 5.3 79 29-115 363-453 (474)
70 2cqy_A Propionyl-COA carboxyla 96.4 0.0045 1.5E-07 47.1 5.5 47 30-76 47-98 (108)
71 2io8_A Bifunctional glutathion 90.5 0.11 3.9E-06 52.3 2.6 46 30-77 529-574 (619)
72 2vob_A Trypanothione synthetas 89.8 0.22 7.5E-06 50.5 4.1 58 30-90 544-601 (652)
73 3k1t_A Glutamate--cysteine lig 87.9 1.8 6.3E-05 40.9 8.6 119 2-129 252-379 (432)
74 1wr2_A Hypothetical protein PH 78.9 2.5 8.7E-05 36.7 5.3 46 30-75 58-117 (238)
75 2fp4_B Succinyl-COA ligase [GD 65.3 12 0.00041 35.3 6.7 45 31-75 43-110 (395)
76 3ufx_B Succinyl-COA synthetase 59.0 17 0.00058 34.3 6.5 46 30-75 41-95 (397)
77 3n6x_A Putative glutathionylsp 48.2 12 0.00041 36.3 3.5 28 200-227 141-169 (474)
78 2nu8_B SCS-beta, succinyl-COA 46.2 29 0.00099 32.5 5.9 45 31-75 43-103 (388)
79 4e9m_A Nucleotide-binding olig 32.9 2.3 8E-05 34.3 -3.5 17 213-229 105-121 (144)
80 3kal_A Homoglutathione synthet 29.6 1.1E+02 0.0039 29.6 7.0 45 199-243 147-193 (499)
81 3le4_A Microprocessor complex 26.2 87 0.003 22.2 4.1 30 90-119 33-62 (79)
No 1
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=100.00 E-value=5.6e-54 Score=410.19 Aligned_cols=229 Identities=31% Similarity=0.520 Sum_probs=166.7
Q ss_pred HHHHHHHHHHhhhhhhhcCCcceEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeecccccccc--CCcee
Q psy10924 8 AKHVVESVEEYNKQEMYDGTHNVWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLI--HGVKF 85 (322)
Q Consensus 8 ~~~~l~~~~~~~pq~~~~~~~~~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi--~grKF 85 (322)
+.++++++.+ ...+|.+++||+||+++|+|+||.++++++++.+++... ...+|||+||++|+|+ +||||
T Consensus 131 ~~~F~~~~~~----~~~~~~~~~wI~KP~~~srG~GI~l~~~~~~i~~~~~~~----~~~~VvQkYI~~PlLi~~~grKF 202 (380)
T 3tig_A 131 REEFRSSFNK----KKENEEGNVWIAKSSSGAKGEGILISSDATELLDFIDNQ----GQVHVIQKYLESPLLLEPGHRKF 202 (380)
T ss_dssp CHHHHHHHHH----HHHTTCCCCEEEEESCC----CCBCCSCSHHHHHHHHHH----TSCEEEEECCSSBCCBTTTTBCE
T ss_pred HHHHHHHHHH----hhhcCCCCeEEEeCCccCCCCCEEEeCCHHHHHHHHhcc----CCcEEEEecccCceeecCCCcee
Confidence 3445555443 345689999999999999999999999999999887643 4689999999999999 99999
Q ss_pred eEEEEEEEeeecCcEEEEecceEEEecCCCCCCCccc-ccccchhhhhhhhc-ccCCCCCCCCCCCccchHHHHHHHHHh
Q psy10924 86 DLRVWYVITNIDKFKIWVYHEGYVRFCSKPYSNILLD-EARHLTNVRIQKQY-RNVRDPPQLPAELMWDFKQLRDYFTKN 163 (322)
Q Consensus 86 DiR~yvlvts~~pl~vy~y~~g~vR~s~~~y~~~~~d-~~~HLTN~~iqk~~-~~~~~~~~~~~~~~ws~~~~~~~L~~~ 163 (322)
|||+|||||| |+++|+|++|++|||+.+|++.+++ .++||||+|+||++ +++. ..+.+++|++++|..||.+.
T Consensus 203 DlR~Yvlvts--~l~vy~y~~g~~Rfa~~~y~~~~~~~~~~HLTN~~iqk~~~~~y~---~~~~g~~~~~~~f~~yL~~~ 277 (380)
T 3tig_A 203 DIRSWVLVDN--QYNIYLYREGVLRTSSEPYSDTNFQDMTSHLTNHCIQKEHSKNYG---RYEEGNEMFFEEFNQYLVTS 277 (380)
T ss_dssp EEEEEEEECT--TCCEEECSCCEEEECC-------------------------------------CCBCHHHHHHHHSTT
T ss_pred EEEEEEEEcC--CCEEEEEcCCEEEecCCCcCccchhhhhhhccccccccccccccc---cccCCCcCcHHHHHHHHHHh
Confidence 9999999997 9999999999999999999999885 69999999999974 4453 22368899999999999874
Q ss_pred cCChhhH-HHHHHHHHHHHHHHHHHhcccccccc---CCCceeEEeeeEEeecCCceEEEEecCCCCCCCCChhHHHHHH
Q psy10924 164 MNLPRKW-DMIMKAMEESIVTIMRCAQSINYIDL---RKNSFQLFGADFLIHENYQPCLIEVNNGPGLSPTTSIIAKKTT 239 (322)
Q Consensus 164 ~g~~~~~-~~i~~~i~~~i~~~l~a~~~~~~~~~---~~~~Fel~G~DfllD~~~kpwLIEVN~~P~l~~~~~~~~~l~~ 239 (322)
.|. .| +.|+++|+++++.++.|+++ .+.. +.+|||+||+|||||++++|||||||++|++.. .+.+
T Consensus 278 ~~~--~~~~~i~~~I~~ii~~~l~a~~~--~i~~~~~~~~~FEl~G~D~lid~~l~~wllEVN~~P~~~q------~~i~ 347 (380)
T 3tig_A 278 LNI--NLENSILCQIKEIIRVCLSCLEP--AISTKYLPYHSFQLFGFDFMVDKNLKVWLIEVNGAPACAQ------KLYA 347 (380)
T ss_dssp SSC--CHHHHTHHHHHHHHHHHHHHHHH--HHCCTTSSSEECEEEEEEEEEBTTCCEEEEEEESSCCCCT------TTHH
T ss_pred cCc--cHHHHHHHHHHHHHHHHHHHHHH--HhhhcccCCceEEEEeEEEEEcCCCcEEEEEEeCCCCccH------HhHH
Confidence 443 34 46799999999999999887 4433 468999999999999999999999999999975 3889
Q ss_pred HHHHHHhhchhcCCCCCCCC
Q psy10924 240 ELLTDMVKVVTAERNPLSSF 259 (322)
Q Consensus 240 ~li~d~l~lv~d~~~p~~~~ 259 (322)
+|+++++++++|+.+|++..
T Consensus 348 ~l~~~~~~iavdp~f~~~~~ 367 (380)
T 3tig_A 348 ELCKGIVDLAISSVFPLNEE 367 (380)
T ss_dssp HHHHHHHHHTTTTTSCCCC-
T ss_pred HHHHHHHHHhcccccCCccc
Confidence 99999999999999976544
No 2
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=99.18 E-value=3e-10 Score=107.78 Aligned_cols=167 Identities=16% Similarity=0.149 Sum_probs=97.6
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEEEeeecCcEEEEecceEE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIWVYHEGYV 109 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvts~~pl~vy~y~~g~v 109 (322)
.+|+||+.+..|+|+.++++.+++.+.+...... ...+++|+||+ |+.+.+ -|+... ...+ ..-+..
T Consensus 179 PvvVKP~~gg~s~Gv~~v~~~~el~~~~~~a~~~-~~~vlvE~~i~------G~e~~v--~vl~~~--~~~~--~~v~~~ 245 (357)
T 4fu0_A 179 PLFIKPVRAGSSFGITKVIEKQELDAAIELAFEH-DTEVIVEETIN------GFEVGC--AVLGID--ELIV--GRVDEI 245 (357)
T ss_dssp SEEEEETTCSSSTTCEEESSHHHHHHHHHHHTTT-CSEEEEEECCC------SEEEEE--EEEESS--SEEE--CCCEEE
T ss_pred CEEEEECCCCCCCceEEeccHHhHHHHHHHHhcc-CCeEEEEEecC------CEEEEE--EEEecC--CceE--EEEEEE
Confidence 5999999999999999999999998877653322 56799999997 765544 444321 1111 000111
Q ss_pred EecCCCCCCCcccccccchhhhhhhhcccCCCCCCCCCCCccchHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhc
Q psy10924 110 RFCSKPYSNILLDEARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIMKAMEESIVTIMRCAQ 189 (322)
Q Consensus 110 R~s~~~y~~~~~d~~~HLTN~~iqk~~~~~~~~~~~~~~~~ws~~~~~~~L~~~~g~~~~~~~i~~~i~~~i~~~l~a~~ 189 (322)
.....-|+.. ..+. .+.. .. .-.....+++..+|+++...++++.
T Consensus 246 ~~~~~~~d~~-----------------~k~~------~~~~---~~--------~~pa~l~~~~~~~i~~~A~~~~~aL- 290 (357)
T 4fu0_A 246 ELSSGFFDYT-----------------EKYT------LKSS---KI--------YMPARIDAEAEKRIQEAAVTIYKAL- 290 (357)
T ss_dssp EECHHHHTSC-----------------SBCS------SCCE---EE--------ESSCSCCHHHHHHHHHHHHHHHHHT-
T ss_pred Eccccccccc-----------------cccc------CCCc---eE--------ecCCCCCHHHHHHHHHHHHHHHHHh-
Confidence 1110001000 0000 0000 00 0000111334455666666666554
Q ss_pred cccccccCCCceeEEeeeEEeecCCceEEEEecCCCCCCCCChhHHHH------HHHHHHHHhhchhcCC
Q psy10924 190 SINYIDLRKNSFQLFGADFLIHENYQPCLIEVNNGPGLSPTTSIIAKK------TTELLTDMVKVVTAER 253 (322)
Q Consensus 190 ~~~~~~~~~~~Fel~G~DfllD~~~kpwLIEVN~~P~l~~~~~~~~~l------~~~li~d~l~lv~d~~ 253 (322)
+|-.+.++||++|++|++|+||||+.|+|+..+-+.... .++|++.++++.+++.
T Consensus 291 ---------g~~G~~~VDf~~~~dg~~~vlEvNt~PG~t~~S~~p~~~~~~G~~~~~li~~li~~aler~ 351 (357)
T 4fu0_A 291 ---------GCSGFSRVDMFYTPSGEIVFNEVNTIPGFTSHSRYPNMMKGIGLSFSQMLDKLIGLYVELE 351 (357)
T ss_dssp ---------TCCEEEEEEEEECTTCCEEEEEEESSCCCSTTCHHHHHHHTTTCCHHHHHHHHHHTTC---
T ss_pred ---------CCcceEEEEEEEeCCCCEEEEEEeCCCCCCcccHHHHHHHHhCcCHHHHHHHHHHHHhccc
Confidence 345788999999999999999999999998765432211 3577777777776643
No 3
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=99.13 E-value=2.6e-10 Score=106.38 Aligned_cols=146 Identities=14% Similarity=0.144 Sum_probs=92.2
Q ss_pred ceEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEEEeeecCcEEEEecceE
Q psy10924 29 NVWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIWVYHEGY 108 (322)
Q Consensus 29 ~~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvts~~pl~vy~y~~g~ 108 (322)
-.-|+||..||+|+|+.++++.+++...+..-... ...+++|+||+ + .+|||++|+-. ++ . ++
T Consensus 153 ~PvVvK~~~Gs~G~GV~lv~~~~~~~~~~~~~~~~-~~~~~vQefI~-~------g~DiRv~VvGg-----~v---~-a~ 215 (309)
T 1i7n_A 153 FPVVVKIGHAHSGMGKVKVENHYDFQDIASVVALT-QTYATAEPFID-A------KYDIRVQKIGN-----NY---K-AY 215 (309)
T ss_dssp SSEEEEESSCSTTTTEEEECSHHHHHHHHHHHHHH-TCCEEEEECCC-E------EEEEEEEEETT-----EE---E-EE
T ss_pred CCEEEEeCCCCceeCeEEECCHHHHHHHHHHHhcc-CCeEEEEeecC-C------CceEEEEEECC-----EE---E-EE
Confidence 47899999999999999999998887766521111 35678999998 3 58999999942 22 1 46
Q ss_pred EEecC-CCCCCCcccccccchhhhhhhhcccCCCCCCCCCCCccchHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH
Q psy10924 109 VRFCS-KPYSNILLDEARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIMKAMEESIVTIMRC 187 (322)
Q Consensus 109 vR~s~-~~y~~~~~d~~~HLTN~~iqk~~~~~~~~~~~~~~~~ws~~~~~~~L~~~~g~~~~~~~i~~~i~~~i~~~l~a 187 (322)
.|.+. ..|. ||.+ .+. .+. ... -++.++++..+.++
T Consensus 216 ~Rr~~~g~wr----------tN~~---------------~~~---~e~--------~~l-------~~e~~~la~~A~~a 252 (309)
T 1i7n_A 216 MRTSISGNWK----------TNTG---------------SAM---LEQ--------IAM-------SDRYKLWVDACSEM 252 (309)
T ss_dssp EEESSCTTTS----------CSCC---------------CSS---EEE--------ECC-------CHHHHHHHHHHTTG
T ss_pred EEEcCCCCCe----------ecCC---------------cce---eee--------cCC-------CHHHHHHHHHHHHH
Confidence 67663 2222 2210 000 000 000 11123333333333
Q ss_pred hccccccccCCCceeEEeeeEEeecCCceEEEEecC--CCCCCCCChhHHH-HHHHHHHH
Q psy10924 188 AQSINYIDLRKNSFQLFGADFLIHENYQPCLIEVNN--GPGLSPTTSIIAK-KTTELLTD 244 (322)
Q Consensus 188 ~~~~~~~~~~~~~Fel~G~DfllD~~~kpwLIEVN~--~P~l~~~~~~~~~-l~~~li~d 244 (322)
. +..+++|+|++.+.+|++.++|||+ +|++......+.. +..-+++.
T Consensus 253 ~----------gGldi~GVDll~~~~g~~~V~EVN~~~~P~~~~~~~~~~~~ia~~ii~~ 302 (309)
T 1i7n_A 253 F----------GGLDICAVKAVHGKDGKDYIFEVMDCSMPLIGEHQVEDRQLITDLVISK 302 (309)
T ss_dssp G----------GCCSEEEEEEEEETTSCEEEEEEECTTCCCCSSCHHHHHHHHHHHHHHH
T ss_pred h----------CCCCEEEEEEEEcCCCCEEEEEECCCCCCCccchhhhhHHHHHHHHHHH
Confidence 2 1358999999999999999999999 9999866554444 33444443
No 4
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=99.12 E-value=8e-10 Score=102.85 Aligned_cols=145 Identities=13% Similarity=0.099 Sum_probs=80.0
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEEEeeecCcEEEEecceEE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIWVYHEGYV 109 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvts~~pl~vy~y~~g~v 109 (322)
.+|+||..++.|+|+.++++.+++.+.+...... ...++||+||+. |+ ++++.|+.....|.......+++.
T Consensus 148 PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~-~~~~lvEe~i~~-----G~--E~~v~vl~~~~~~~~~i~~~~~~~ 219 (317)
T 4eg0_A 148 PLFVKPASEGSSVAVLKVKTADALPAALSEAATH-DKIVIVEKSIEG-----GG--EYTACIAGDLDLPLIKIVPAGEFY 219 (317)
T ss_dssp CEEEEECC-----CCEEECSGGGHHHHHHHHTTT-CSEEEEEECCCS-----SE--EEEEEEETTCCCCCEEEEC-----
T ss_pred CEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhC-CCeEEEEcCCCC-----Cc--EEEEEEECCcccceEEEeeCCcee
Confidence 4899999999999999999999998877642211 568999999983 54 666766643222211111010000
Q ss_pred EecCCCCCCCcccccccchhhhhhhhcccCCCCCCCCCCCccchHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhc
Q psy10924 110 RFCSKPYSNILLDEARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIMKAMEESIVTIMRCAQ 189 (322)
Q Consensus 110 R~s~~~y~~~~~d~~~HLTN~~iqk~~~~~~~~~~~~~~~~ws~~~~~~~L~~~~g~~~~~~~i~~~i~~~i~~~l~a~~ 189 (322)
.+.. +|... ...+ .-......++.+++.+.+..++++.
T Consensus 220 ~~~~-k~~~g---~~~~-------------------------------------~~P~~l~~~~~~~l~~~a~~~~~~l- 257 (317)
T 4eg0_A 220 DYHA-KYVAN---DTQY-------------------------------------LIPCGLPAEQETELKRIARRAFDVL- 257 (317)
T ss_dssp --------------CEE-------------------------------------ESSCSSCHHHHHHHHHHHHHHHHTT-
T ss_pred chhh-cccCC---CeeE-------------------------------------EcCCCCCHHHHHHHHHHHHHHHHHh-
Confidence 0000 00000 0000 0000011223344555555444432
Q ss_pred cccccccCCCceeEEeeeEEeecCCceEEEEecCCCCCCCCChh
Q psy10924 190 SINYIDLRKNSFQLFGADFLIHENYQPCLIEVNNGPGLSPTTSI 233 (322)
Q Consensus 190 ~~~~~~~~~~~Fel~G~DfllD~~~kpwLIEVN~~P~l~~~~~~ 233 (322)
++....++||++|+++++|+||||+.|+++..+-.
T Consensus 258 ---------g~~G~~~vD~~~~~~g~~~vlEiN~~pg~t~~s~~ 292 (317)
T 4eg0_A 258 ---------GCTDWGRADFMLDAAGNAYFLEVNTAPGMTDHSLP 292 (317)
T ss_dssp ---------TCCSEEEEEEEECTTCCEEEEEEESSCCCSTTSHH
T ss_pred ---------CCCceEEEEEEEeCCCCEEEEEeeCCCCCCcccHH
Confidence 34468899999999999999999999999876544
No 5
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=99.09 E-value=3.4e-09 Score=100.02 Aligned_cols=152 Identities=13% Similarity=0.124 Sum_probs=87.0
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEEEeeecCcEEEEecceEE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIWVYHEGYV 109 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvts~~pl~vy~y~~g~v 109 (322)
.+|+||..++.|.|+.++++.+++.+.+...... ...++||+||+ |+ ++++.++...-.+ .+ +--+..
T Consensus 167 PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~-~~~vlvEe~I~------G~--E~~v~vl~~~~~~-~~--~~~~e~ 234 (346)
T 3se7_A 167 PVFVKPARSGSSFGVSKVAREEDLQGAVEAAREY-DSKVLIEEAVI------GT--EIGCAVMGNGPEL-IT--GEVDQI 234 (346)
T ss_dssp SEEEEESSCCTTTTCEEECSHHHHHHHHHHHTTT-CSEEEEEECCC------SE--EEEEEEEEETTEE-EE--CCCEEE
T ss_pred CEEEEeCCCCCCcCEEEECCHHHHHHHHHHHHhC-CCcEEEEeCcC------CE--EEEEEEEecCCCe-EE--EeeEEE
Confidence 5899999999999999999999998877653211 56899999998 65 7777777642111 11 111111
Q ss_pred EecCCCCCCCcccccccchhhhhhhhcccCCCCCCCCCCCccchHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhc
Q psy10924 110 RFCSKPYSNILLDEARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIMKAMEESIVTIMRCAQ 189 (322)
Q Consensus 110 R~s~~~y~~~~~d~~~HLTN~~iqk~~~~~~~~~~~~~~~~ws~~~~~~~L~~~~g~~~~~~~i~~~i~~~i~~~l~a~~ 189 (322)
.....-|+. .|....++. .+.... .-.....+++..++.+++..++++.
T Consensus 235 ~~~~~~~d~-------------~q~~~~ky~------~~~~~~-----------~~pa~l~~~~~~~i~~~a~~~~~~l- 283 (346)
T 3se7_A 235 TLSHGFFKI-------------HQESTPESG------SDNSAV-----------TVPADISTTSRSLVQDTAKAVYRAL- 283 (346)
T ss_dssp CCC---------------------------C------GGGSCE-----------ESSCCCCHHHHHHHHHHHHHHHHHH-
T ss_pred ecCCCCcCc-------------ccchhcccc------CCCeeE-----------EeCCCCCHHHHHHHHHHHHHHHHHh-
Confidence 111100110 000000000 000000 0000011233444555555555543
Q ss_pred cccccccCCCceeEEeeeEEeecCCceEEEEecCCCCCCCCChh
Q psy10924 190 SINYIDLRKNSFQLFGADFLIHENYQPCLIEVNNGPGLSPTTSI 233 (322)
Q Consensus 190 ~~~~~~~~~~~Fel~G~DfllD~~~kpwLIEVN~~P~l~~~~~~ 233 (322)
++-.+.++||++|+++++|+||||+.|+++..+..
T Consensus 284 ---------g~~G~~~vD~~~~~~g~~~vlEiN~rPG~t~~s~~ 318 (346)
T 3se7_A 284 ---------GCRGLSRVDLFLTEDGKVVLNEVNTFPGMTSYSRY 318 (346)
T ss_dssp ---------TCCEEEEEEEEECTTSCEEEEEEESSCCCSTTCHH
T ss_pred ---------CCceEEEEEEEEeCCCCEEEEEEeCCCCCCcccHH
Confidence 23478999999999999999999999999876543
No 6
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=99.06 E-value=6.7e-10 Score=107.12 Aligned_cols=147 Identities=16% Similarity=0.147 Sum_probs=93.3
Q ss_pred ceEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEEEeeecCcEEEEecceE
Q psy10924 29 NVWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIWVYHEGY 108 (322)
Q Consensus 29 ~~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvts~~pl~vy~y~~g~ 108 (322)
-.-|+||..|++|+|+.++++.+++...+...... ...+++|+||+ + ++|||++|+-. ++ + ++
T Consensus 265 ~PvVvKp~~GS~G~GV~lve~~~~l~~ii~~~~~~-~~~~~vQEfI~-~------g~DIRv~VVGg-----~v-v---a~ 327 (422)
T 1pk8_A 265 YPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALT-KTYATAEPFID-A------KYDVRVQKIGQ-----NY-K---AY 327 (422)
T ss_dssp SSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHHH-TSCEEEEECCC-E------EEEEEEEEETT-----EE-E---EE
T ss_pred CCEEEEeCCCCceeCeEEeCCHHHHHHHHHHHhcc-CceEEEEeecC-C------CceEEEEEECC-----EE-E---EE
Confidence 36799999999999999999998888766531110 35678999998 3 58999999942 22 1 46
Q ss_pred EEecC-CCCCCCcccccccchhhhhhhhcccCCCCCCCCCCCccchHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH
Q psy10924 109 VRFCS-KPYSNILLDEARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIMKAMEESIVTIMRC 187 (322)
Q Consensus 109 vR~s~-~~y~~~~~d~~~HLTN~~iqk~~~~~~~~~~~~~~~~ws~~~~~~~L~~~~g~~~~~~~i~~~i~~~i~~~l~a 187 (322)
.|.+. ..|. ||.. . + .++. .. +-+++++++..+.++
T Consensus 328 ~Rr~~~g~Wr----------tNvg-~--------------g---~~e~--------i~-------lt~e~~elA~kAaka 364 (422)
T 1pk8_A 328 MRTSVSGNWK----------TNTG-S--------------A---MLEQ--------IA-------MSDRYKLWVDTCSEI 364 (422)
T ss_dssp EEEESSSCSS----------TTSS-C--------------E---EEEE--------EC-------CCHHHHHHHHHHTTG
T ss_pred EEEcCCCCce----------eccC-c--------------e---eeee--------eC-------CCHHHHHHHHHHHHH
Confidence 66653 2232 2211 0 0 0000 00 011233344433333
Q ss_pred hccccccccCCCceeEEeeeEEeecCCceEEEEecC--CCCCCCCChhHHH-HHHHHHHHH
Q psy10924 188 AQSINYIDLRKNSFQLFGADFLIHENYQPCLIEVNN--GPGLSPTTSIIAK-KTTELLTDM 245 (322)
Q Consensus 188 ~~~~~~~~~~~~~Fel~G~DfllD~~~kpwLIEVN~--~P~l~~~~~~~~~-l~~~li~d~ 245 (322)
. +..+++|+|++.++++++.+||||+ +|.+......+.. +...+++.+
T Consensus 365 ~----------gGldiaGVDlL~s~dG~~~VlEVN~s~~P~~~g~~~~~~~~IA~~ii~~i 415 (422)
T 1pk8_A 365 F----------GGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKM 415 (422)
T ss_dssp G----------GCCSEEEEEEEEETTSCEEEEEEECTTCCCCTTCHHHHHHHHHHHHHHHH
T ss_pred h----------CCCCEEEEEEEEcCCCCEEEEEECCCCCCCccchhhhHHHHHHHHHHHHH
Confidence 3 2368999999999999999999999 9999866555544 344444443
No 7
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=99.06 E-value=5.4e-10 Score=105.58 Aligned_cols=149 Identities=12% Similarity=0.147 Sum_probs=92.6
Q ss_pred ceEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEEEeeecCcEEEEecceE
Q psy10924 29 NVWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIWVYHEGY 108 (322)
Q Consensus 29 ~~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvts~~pl~vy~y~~g~ 108 (322)
-.-|+||..||+|+|+.++++.+++...+..-.. ....+++|+||+ + ++|||++|+-. ++ . ++
T Consensus 170 ~PvVvK~~~Gs~G~GV~lve~~~~~~~~~~~~~~-~~~~~~vQefI~-~------g~DiRv~VVGg-----~v---v-a~ 232 (344)
T 2p0a_A 170 FPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAM-AKTYATTEAFID-S------KYDIRIQKIGS-----NY---K-AY 232 (344)
T ss_dssp SSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHH-HTCCEEEEECCC-E------EEEEEEEEETT-----EE---E-EE
T ss_pred CCEEEEeCCCCceeCeEEECCHHHHHHHHHHHhc-cCCeEEEEeccC-C------CccEEEEEECC-----EE---E-EE
Confidence 3679999999999999999999888765542110 035677999998 3 58999999942 22 1 46
Q ss_pred EEecC-CCCCCCcccccccchhhhhhhhcccCCCCCCCCCCCccchHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH
Q psy10924 109 VRFCS-KPYSNILLDEARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIMKAMEESIVTIMRC 187 (322)
Q Consensus 109 vR~s~-~~y~~~~~d~~~HLTN~~iqk~~~~~~~~~~~~~~~~ws~~~~~~~L~~~~g~~~~~~~i~~~i~~~i~~~l~a 187 (322)
.|.+. ..|. ||.+ . + ..+. ... -++.++++..+.++
T Consensus 233 ~R~~~~g~wr----------tN~~-~--------------~---~~e~--------~~l-------~~e~~~la~~Aa~a 269 (344)
T 2p0a_A 233 MRTSISGNWK----------ANTG-S--------------A---MLEQ--------VAM-------TERYRLWVDSCSEM 269 (344)
T ss_dssp EEEESSSCSS----------TTSS-S--------------E---EEEE--------ECC-------CHHHHHHHHHHTTG
T ss_pred EEecCCCCCe----------ecCC-c--------------e---EEEe--------eCC-------CHHHHHHHHHHHHH
Confidence 66663 3332 2211 0 0 0000 000 11233334333333
Q ss_pred hccccccccCCCceeEEeeeEEeecCCceEEEEecC--CCCCCCCChhHHH-HHHHHHHHHhh
Q psy10924 188 AQSINYIDLRKNSFQLFGADFLIHENYQPCLIEVNN--GPGLSPTTSIIAK-KTTELLTDMVK 247 (322)
Q Consensus 188 ~~~~~~~~~~~~~Fel~G~DfllD~~~kpwLIEVN~--~P~l~~~~~~~~~-l~~~li~d~l~ 247 (322)
. +..+++|+|++.+.+|++.+||||+ +|++......+.. +...+++.+-+
T Consensus 270 ~----------gGldi~GVDll~~~~G~~~VlEVN~~~~P~~~~~~~~~~~~Ia~~ii~~i~~ 322 (344)
T 2p0a_A 270 F----------GGLDICAVKAVHSKDGRDYIIEVMDSSMPLIGEHVEEDRQLMADLVVSKMSQ 322 (344)
T ss_dssp G----------GCCSEEEEEEEEETTSCEEEEEEECTTCCCCGGGHHHHHHHHHHHHHHHHHT
T ss_pred h----------CCCCEEEEEEEEcCCCCEEEEEEcCCCCCcccchhhhHHHHHHHHHHHHHHH
Confidence 2 1358999999999999999999999 9999755444433 44444444433
No 8
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=99.05 E-value=9.2e-09 Score=96.74 Aligned_cols=150 Identities=14% Similarity=0.160 Sum_probs=87.6
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEEEeeecCcEEEEecceEE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIWVYHEGYV 109 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvts~~pl~vy~y~~g~v 109 (322)
.+|+||..++.|+|+.++++.+++.+.+...... ...++||+||+ |+ ++++.++....+ ..+ .--+-+
T Consensus 167 PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~-~~~~lvEe~I~------G~--E~~v~vl~~~~~-~~~--~~~~ei 234 (343)
T 1e4e_A 167 PVFVKPARSGSSFGVKKVNSADELDYAIESARQY-DSKILIEQAVS------GC--EVGCAVLGNSAA-LVV--GEVDQI 234 (343)
T ss_dssp CEEEEESSCCTTTTCEEECSGGGHHHHHHHHTTT-CSSEEEEECCC------SE--EEEEEEEEETTC-CEE--CCCEEE
T ss_pred CEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc-CCcEEEEeCcC------Ce--EEEEEEEeCCCC-eEE--eeeEEE
Confidence 6999999999999999999999998877642211 46899999997 75 666666654311 111 111112
Q ss_pred EecCCCCCCCcccccccchhhhhhhhcccCCCCCCCCCCCccchHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhc
Q psy10924 110 RFCSKPYSNILLDEARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIMKAMEESIVTIMRCAQ 189 (322)
Q Consensus 110 R~s~~~y~~~~~d~~~HLTN~~iqk~~~~~~~~~~~~~~~~ws~~~~~~~L~~~~g~~~~~~~i~~~i~~~i~~~l~a~~ 189 (322)
.....-|+... .+ |. + .. .+..... ... ...+.+.+++++++..++++.
T Consensus 235 ~~~~~~~~~~~--k~-~~-~---------~~------~g~~~~~----------~p~-~l~~~~~~~i~~~a~~~~~al- 283 (343)
T 1e4e_A 235 RLQYGIFRIHQ--EV-EP-E---------KG------SENAVIT----------VPA-DLSAEERGRIQETVKKIYKTL- 283 (343)
T ss_dssp EESSSCCCGGG--SS-SG-G---------GC------CSSEEEC----------SSC-SSCHHHHHHHHHHHHHHHHHT-
T ss_pred eeCCCccCHhh--cc-cc-c---------CC------CCCeeEE----------eCC-CCCHHHHHHHHHHHHHHHHHc-
Confidence 22111111100 00 00 0 00 0000000 000 011233444555555555543
Q ss_pred cccccccCCCceeEEeeeEEeecCCceEEEEecCCCCCCCCC
Q psy10924 190 SINYIDLRKNSFQLFGADFLIHENYQPCLIEVNNGPGLSPTT 231 (322)
Q Consensus 190 ~~~~~~~~~~~Fel~G~DfllD~~~kpwLIEVN~~P~l~~~~ 231 (322)
++...+++||++|+++++|+||||+.|++...+
T Consensus 284 ---------g~~G~~~vD~~~~~~g~~~viEiN~rpg~t~~s 316 (343)
T 1e4e_A 284 ---------GCRGLARVDMFLQDNGRIVLNEVNTLPGFTSYS 316 (343)
T ss_dssp ---------TCEEEEEEEEEECTTCCEEEEEEESSCCCSTTC
T ss_pred ---------CCceEEEEEEEEeCCCCEEEEEeeCCCCCCccc
Confidence 345889999999999999999999999998654
No 9
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=99.03 E-value=5e-09 Score=100.17 Aligned_cols=146 Identities=14% Similarity=0.154 Sum_probs=86.5
Q ss_pred EEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEEEeeecCcEEEEecceEEE
Q psy10924 31 WVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIWVYHEGYVR 110 (322)
Q Consensus 31 WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvts~~pl~vy~y~~g~vR 110 (322)
+|+||..++.|.||.++++.+++.+.+...... ...++||+||+ |+ ++++-|+... . ..+ .--+-+.
T Consensus 183 vvVKP~~ggss~Gv~~v~~~~eL~~a~~~a~~~-~~~vlVEe~I~------G~--E~~v~vl~~~-~-~~~--~~~~ei~ 249 (372)
T 3tqt_A 183 LFVKAVSLGSSVATLPVKTETEFTKAVKEVFRY-DDRLMVEPRIR------GR--EIECAVLGNG-A-PKA--SLPGEII 249 (372)
T ss_dssp EEEEESSCCSGGGEEEECSHHHHHHHHHHHTTT-CSCEEEEECCC------SE--EEEEEEEESS-S-CEE--CCCEEEE
T ss_pred EEEEECCCCCCCCEEEECCHHHHHHHHHHHHhc-CCCEEEECCCC------CE--EEEEEEEeCC-C-ceE--eeeEEEe
Confidence 999999999999999999999998877643221 56899999998 75 5666666532 1 111 0111111
Q ss_pred ecCCCCCCCcccccccchhhhhhhhcccCCCCCCCCCC-CccchHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhc
Q psy10924 111 FCSKPYSNILLDEARHLTNVRIQKQYRNVRDPPQLPAE-LMWDFKQLRDYFTKNMNLPRKWDMIMKAMEESIVTIMRCAQ 189 (322)
Q Consensus 111 ~s~~~y~~~~~d~~~HLTN~~iqk~~~~~~~~~~~~~~-~~ws~~~~~~~L~~~~g~~~~~~~i~~~i~~~i~~~l~a~~ 189 (322)
....-|+... ++.. ++ .... ... ...+++..+++++...++++.
T Consensus 250 ~~~~~~d~~~--------------ky~~--------g~~~~~~-----------~Pa-~l~~~~~~~i~~~a~~~~~aL- 294 (372)
T 3tqt_A 250 PHHDYYSYDA--------------KYLD--------PNGATTT-----------TSV-DLSESVTKQIQQIAIDAFKMV- 294 (372)
T ss_dssp CC-------------------------------------CEEE-----------SCC-CCCHHHHHHHHHHHHHHHHHT-
T ss_pred cCCCccchhh--------------cccC--------CCceEEE-----------eCC-CCCHHHHHHHHHHHHHHHHHh-
Confidence 1111111000 0000 00 0000 000 011233445666666655543
Q ss_pred cccccccCCCceeEEeeeEEeecCCceEEEEecCCCCCCCCChh
Q psy10924 190 SINYIDLRKNSFQLFGADFLIHENYQPCLIEVNNGPGLSPTTSI 233 (322)
Q Consensus 190 ~~~~~~~~~~~Fel~G~DfllD~~~kpwLIEVN~~P~l~~~~~~ 233 (322)
+|-.+.++||++|++++||+||||+.|+|+..+-.
T Consensus 295 ---------g~~G~~rvDf~~~~dg~~~vlEINt~PG~t~~S~~ 329 (372)
T 3tqt_A 295 ---------HCSGMARVDFFVTPNNKVLVNEINTIPGFTNISMY 329 (372)
T ss_dssp ---------TCCEEEEEEEEECTTCCEEEEEEESSCCCSTTCHH
T ss_pred ---------CCccEEEEEEEEeCCCcEEEEEEECCCCcCccCHH
Confidence 34578999999999999999999999999976544
No 10
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=99.02 E-value=6.3e-09 Score=98.76 Aligned_cols=145 Identities=15% Similarity=0.145 Sum_probs=86.2
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEEEeeecCcEEEEecceEE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIWVYHEGYV 109 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvts~~pl~vy~y~~g~v 109 (322)
.+|+||..++.|+||.++++.+++.+.+...... ...++||+||+ |+ ++++.++... ++ .+ ...|-+
T Consensus 173 PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~~~-~~~~lvEe~I~------G~--E~~v~vl~~~-~~-~~--~~~~e~ 239 (364)
T 2i87_A 173 PVFVKPANLGSSVGISKCNNEAELKEGIKEAFQF-DRKLVIEQGVN------AR--EIEVAVLGND-YP-EA--TWPGEV 239 (364)
T ss_dssp SEEEEESSCSSCTTCEEESSHHHHHHHHHHHHTT-CSEEEEEECCC------CE--EEEEEEEESS-SC-EE--CCCEEE
T ss_pred CEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhc-CCeEEEEeCcc------Ce--EEEEEEEcCC-Cc-EE--eeeEEE
Confidence 5999999999999999999999988777542111 46899999998 65 6777777632 11 11 111111
Q ss_pred EecCCCCCCCcccccccchhhhhhhhcccCCCCCCCCCCCccchHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhc
Q psy10924 110 RFCSKPYSNILLDEARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIMKAMEESIVTIMRCAQ 189 (322)
Q Consensus 110 R~s~~~y~~~~~d~~~HLTN~~iqk~~~~~~~~~~~~~~~~ws~~~~~~~L~~~~g~~~~~~~i~~~i~~~i~~~l~a~~ 189 (322)
.....-|+... .+ | ++ +... .-.......+.+++++++..++++.
T Consensus 240 ~~~~~~~~~~~--k~-~-~g------------------~~~~------------~~pa~l~~~~~~~i~~~a~~~~~al- 284 (364)
T 2i87_A 240 VKDVAFYDYKS--KY-K-DG------------------KVQL------------QIPADLDEDVQLTLRNMALEAFKAT- 284 (364)
T ss_dssp CCSCCC---------------------------------CCE------------ESSCSSCHHHHHHHHHHHHHHHHHT-
T ss_pred ecCCCcCCHHH--cc-c-CC------------------CeeE------------EeCCCCCHHHHHHHHHHHHHHHHHc-
Confidence 11100111000 00 0 00 0000 0000011233445666666655543
Q ss_pred cccccccCCCceeEEeeeEEeecCCceEEEEecCCCCCCCCC
Q psy10924 190 SINYIDLRKNSFQLFGADFLIHENYQPCLIEVNNGPGLSPTT 231 (322)
Q Consensus 190 ~~~~~~~~~~~Fel~G~DfllD~~~kpwLIEVN~~P~l~~~~ 231 (322)
++..+.++||++|+++++||||||+.|++...+
T Consensus 285 ---------g~~G~~~vD~~~~~~g~~~viEiN~rpg~t~~s 317 (364)
T 2i87_A 285 ---------DCSGLVRADFFVTEDNQIYINETNAMPGFTAFS 317 (364)
T ss_dssp ---------TCCEEEEEEEEECTTCCEEEEEEESSCCCSTTS
T ss_pred ---------CCCcEEEEEEEEecCCCEEEEEEeCCCCCCchh
Confidence 234789999999999999999999999997654
No 11
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=98.99 E-value=9.5e-09 Score=96.00 Aligned_cols=55 Identities=22% Similarity=0.276 Sum_probs=43.9
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCC-ceeeEEEEEEE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHG-VKFDLRVWYVI 93 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~g-rKFDiR~yvlv 93 (322)
.+|+||..++.|.|+.++++.+++.+.+...... ...++||+||+ | + ++++-|+.
T Consensus 152 PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~~~-~~~vlvEe~I~------G~~--E~~v~vl~ 207 (322)
T 2fb9_A 152 PFFVKPANTGSSVGISRVERFQDLEAALALAFRY-DEKAVVEKALS------PVR--ELEVGVLG 207 (322)
T ss_dssp CEEEEETTCCTTTTCEEESSHHHHHHHHHHHTTT-CSEEEEEECCS------SCE--EEEEEEES
T ss_pred CEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhc-CCeEEEEeCCC------CCe--eEEEEEEe
Confidence 6999999999999999999999988877643211 46899999998 5 5 56666664
No 12
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=98.98 E-value=6.6e-09 Score=95.31 Aligned_cols=142 Identities=13% Similarity=0.149 Sum_probs=83.8
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEEEeeecCcEEEEecceEE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIWVYHEGYV 109 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvts~~pl~vy~y~~g~v 109 (322)
.+|+||..++.|+|+.++++.+++.+.+...... ...++||+||+ |+ ++|+.++ . . +++ +.+
T Consensus 140 p~vvKP~~g~~~~gv~~v~~~~el~~~~~~~~~~-~~~~lvee~i~------g~--e~~v~~~-~---g-~~~----~~~ 201 (306)
T 1iow_A 140 PVIVKPSREGSSVGMSKVVAENALQDALRLAFQH-DEEVLIEKWLS------GP--EFTVAIL-G---E-EIL----PSI 201 (306)
T ss_dssp SEEEEETTCCTTTTCEEESSGGGHHHHHHHHTTT-CSEEEEEECCC------CC--EEEEEEE-T---T-EEC----CCE
T ss_pred CEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhh-CCCEEEEeCcC------CE--EEEEEEE-C---C-Ccc----ceE
Confidence 5999999999999999999999988877642211 46899999998 55 7777776 1 1 210 111
Q ss_pred EecCCCCCCCcccccccchhhhhhhhcccCCCCCCCCCCCccchHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhc
Q psy10924 110 RFCSKPYSNILLDEARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIMKAMEESIVTIMRCAQ 189 (322)
Q Consensus 110 R~s~~~y~~~~~d~~~HLTN~~iqk~~~~~~~~~~~~~~~~ws~~~~~~~L~~~~g~~~~~~~i~~~i~~~i~~~l~a~~ 189 (322)
+..... .-.+ .-+|+. .|..... ... .....+.+++.+++..++.+.
T Consensus 202 ~~~~~~---~~~~---~~~~~~---------------~g~~~~~----------~p~-~l~~~~~~~i~~~a~~~~~~l- 248 (306)
T 1iow_A 202 RIQPSG---TFYD---YEAKFL---------------SDETQYF----------CPA-GLEASQEANLQALVLKAWTTL- 248 (306)
T ss_dssp EEECSS---SSSC---HHHHHT---------------CSCCEEE----------SSC-CCCHHHHHHHHHHHHHHHHHH-
T ss_pred EEEeCC---CeEc---hhheec---------------CCCeeEE----------cCC-CCCHHHHHHHHHHHHHHHHHc-
Confidence 111110 0000 001110 0000000 000 001223344555555554443
Q ss_pred cccccccCCCceeEEeeeEEeecCCceEEEEecCCCCCCCCC
Q psy10924 190 SINYIDLRKNSFQLFGADFLIHENYQPCLIEVNNGPGLSPTT 231 (322)
Q Consensus 190 ~~~~~~~~~~~Fel~G~DfllD~~~kpwLIEVN~~P~l~~~~ 231 (322)
++...+|+||++|++|++|+||||..|++...+
T Consensus 249 ---------g~~G~~~vD~~~~~~g~~~~iEiN~rpg~~~~s 281 (306)
T 1iow_A 249 ---------GCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHS 281 (306)
T ss_dssp ---------TCCSEEEEEEEECTTSCEEEEEEESSCCCSTTC
T ss_pred ---------CCceEEEEEEEEcCCCCEEEEEecCCCCCCCCC
Confidence 235788999999999999999999999997653
No 13
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=98.97 E-value=1.1e-08 Score=98.19 Aligned_cols=165 Identities=13% Similarity=0.085 Sum_probs=93.2
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEEEeeecCcEEEEecceEE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIWVYHEGYV 109 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvts~~pl~vy~y~~g~v 109 (322)
.+|+||..++.|+||.++++.+++.+.+...... ...++||+||+ |+ ++++-|+... ...+. .-|-+
T Consensus 200 PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~~-~~~vlVEe~I~------G~--E~~v~vl~~~--~~~~~--~~gei 266 (386)
T 3e5n_A 200 PLFVKPANQGSSVGVSQVRTADAFAAALALALAY-DHKVLVEAAVA------GR--EIECAVLGNA--VPHAS--VCGEV 266 (386)
T ss_dssp SEEEEESBSCSSTTCEEECSGGGHHHHHHHHTTT-CSEEEEEECCC------SE--EEEEEEECSS--SCEEE--EEEEE
T ss_pred CEEEEECCCCcCCCEEEECCHHHHHHHHHHHHhC-CCcEEEEcCCC------Ce--EEEEEEEeCC--CceEE--EeEEE
Confidence 4899999999999999999999998877642211 46799999998 64 5666665432 12221 11111
Q ss_pred EecCCCCCCCcccccccchhhhhhhhcccCCCCCCCCCCCccchHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhc
Q psy10924 110 RFCSKPYSNILLDEARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIMKAMEESIVTIMRCAQ 189 (322)
Q Consensus 110 R~s~~~y~~~~~d~~~HLTN~~iqk~~~~~~~~~~~~~~~~ws~~~~~~~L~~~~g~~~~~~~i~~~i~~~i~~~l~a~~ 189 (322)
.....-|+... .+. .+ .+... .-....-.++..++++++..++++.
T Consensus 267 ~~~~~~~d~~~--ky~--~~-----------------~~~~~------------~~Pa~l~~~~~~~i~~~a~~~~~aL- 312 (386)
T 3e5n_A 267 VVHDAFYSYAT--KYI--SE-----------------HGAEI------------VIPADIDAQTQQRIQQIAVQAYQAL- 312 (386)
T ss_dssp CC--------------------------------------CE------------ESSCSSCHHHHHHHHHHHHHHHHHH-
T ss_pred EeCCcccchhc--ccC--CC-----------------CCeEE------------EECCCCCHHHHHHHHHHHHHHHHHh-
Confidence 11110011000 000 00 00000 0000011233445566665555543
Q ss_pred cccccccCCCceeEEeeeEEeecCCceEEEEecCCCCCCCCChhHHHH------HHHHHHHHhhchh
Q psy10924 190 SINYIDLRKNSFQLFGADFLIHENYQPCLIEVNNGPGLSPTTSIIAKK------TTELLTDMVKVVT 250 (322)
Q Consensus 190 ~~~~~~~~~~~Fel~G~DfllD~~~kpwLIEVN~~P~l~~~~~~~~~l------~~~li~d~l~lv~ 250 (322)
+|..+.++||++|+++++|+||||+.|+|+..+-+.... ..+++..+++..+
T Consensus 313 ---------g~~G~~~vDf~~~~dg~~~vlEiN~~PG~t~~S~~p~~~~~~Gi~~~~li~~li~~a~ 370 (386)
T 3e5n_A 313 ---------GCAGMARVDVFLCADGRIVINEVNTLPGFTRISVYPKLWQASGLDYRGLITRLIELAL 370 (386)
T ss_dssp ---------TCCSEEEEEEEECTTCCEEEEEEESSCCCSTTCHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred ---------CCccEEEEEEEEECCCcEEEEEeECCCCCCccCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 344788999999999999999999999998765432211 3455555555444
No 14
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=98.94 E-value=2.4e-08 Score=94.88 Aligned_cols=148 Identities=11% Similarity=0.130 Sum_probs=86.4
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEEEeeecCcEEEEecceEE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIWVYHEGYV 109 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvts~~pl~vy~y~~g~v 109 (322)
.+|+||..++.|.||.++++.+++.+.+...... ...++||+||+ |+ ++++-|+... .+ .+ ..-|-+
T Consensus 181 PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~~-~~~vlVEe~I~------G~--E~~v~vl~~~-~~-~~--~~~~ei 247 (364)
T 3i12_A 181 PLFVKPANQGSSVGVSKVANEAQYQQAVALAFEF-DHKVVVEQGIK------GR--EIECAVLGND-NP-QA--STCGEI 247 (364)
T ss_dssp SEEEEETTCCTTTTCEEESSHHHHHHHHHHHHHH-CSEEEEEECCC------SE--EEEEEEEESS-SC-EE--EEEEEE
T ss_pred CEEEEECCCCCCcCeEEeCCHHHHHHHHHHHHhc-CCcEEEEcCcC------Ce--EEEEEEEeCC-Cc-eE--eeeEEE
Confidence 4899999999999999999999988766532111 46899999998 74 6666666532 11 11 111222
Q ss_pred EecCCCCCCCcccccccchhhhhhhhcccCCCCCCCCCCCccchHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhc
Q psy10924 110 RFCSKPYSNILLDEARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIMKAMEESIVTIMRCAQ 189 (322)
Q Consensus 110 R~s~~~y~~~~~d~~~HLTN~~iqk~~~~~~~~~~~~~~~~ws~~~~~~~L~~~~g~~~~~~~i~~~i~~~i~~~l~a~~ 189 (322)
.....-|+... .+ ..+.. .... ... ..-.++..++.+++..++++.
T Consensus 248 ~~~~~~~~~~~--ky--~~~~~-----------------~~~~-----------~Pa-~l~~~~~~~i~~~a~~~~~al- 293 (364)
T 3i12_A 248 VLNSEFYAYDT--KY--IDDNG-----------------AQVV-----------VPA-QIPSEVNDKIRAIAIQAYQTL- 293 (364)
T ss_dssp ECCTTCC--TT--TT--SGGGG-----------------CEEE-----------SSC-SSCHHHHHHHHHHHHHHHHHT-
T ss_pred ecCCCccCHHH--cc--cCCCc-----------------eEEE-----------eCC-CCCHHHHHHHHHHHHHHHHHh-
Confidence 21111111110 00 00000 0000 000 011233444555555555443
Q ss_pred cccccccCCCceeEEeeeEEeecCCceEEEEecCCCCCCCCChh
Q psy10924 190 SINYIDLRKNSFQLFGADFLIHENYQPCLIEVNNGPGLSPTTSI 233 (322)
Q Consensus 190 ~~~~~~~~~~~Fel~G~DfllD~~~kpwLIEVN~~P~l~~~~~~ 233 (322)
+|..+.++||++|+++++|+||||+.|+++..+-.
T Consensus 294 ---------g~~G~~~vD~~~~~~g~~~vlEiN~~Pg~t~~s~~ 328 (364)
T 3i12_A 294 ---------GCAGMARVDVFLTADNEVVINEINTLPGFTNISMY 328 (364)
T ss_dssp ---------TCCEEEEEEEEECTTCCEEEEEEESSCCCSTTCHH
T ss_pred ---------CCceEEEEEEEEecCCCEEEEEeeCCCCCCCCCHH
Confidence 34578899999999999999999999999876543
No 15
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=98.94 E-value=1.1e-08 Score=98.28 Aligned_cols=147 Identities=18% Similarity=0.166 Sum_probs=77.1
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEEEeeecCcEEEEecceEE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIWVYHEGYV 109 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvts~~pl~vy~y~~g~v 109 (322)
.+|+||..++.|.||.++++.+++.+.+...... ...++||+||+ |+ ++++-|+.. +...++.- +-+
T Consensus 203 PvvVKP~~ggss~GV~~v~~~~el~~al~~a~~~-~~~vlVEe~I~------G~--E~~v~vl~d--~~~~~~~~--~ei 269 (383)
T 3k3p_A 203 PVFVKPANMGSSVGISKAENRTDLKQAIALALKY-DSRVLIEQGVD------AR--EIEVGILGN--TDVKTTLP--GEI 269 (383)
T ss_dssp SEEEEECC------CEEESSHHHHHHHHHHHHHH-CSEEEEEECCC------SE--EEEEEEEES--SSCEECCC--EEE
T ss_pred CEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhC-CCeEEEEcCCC------Ce--EEEEEEEeC--CCeeEEee--EEE
Confidence 4999999999999999999999988776532111 46899999998 76 555555542 22222100 000
Q ss_pred EecCCCCCCCcccccccchhhhhhhhcccCCCCCCCCCCCccchHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhc
Q psy10924 110 RFCSKPYSNILLDEARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIMKAMEESIVTIMRCAQ 189 (322)
Q Consensus 110 R~s~~~y~~~~~d~~~HLTN~~iqk~~~~~~~~~~~~~~~~ws~~~~~~~L~~~~g~~~~~~~i~~~i~~~i~~~l~a~~ 189 (322)
.....-|+-.. + |. .+.. ...-....-+++..++++....++++.
T Consensus 270 ~~~~~~~d~~~--------------k---y~------~g~~-----------~~~~Pa~l~~~~~~~i~~~a~~~~~aL- 314 (383)
T 3k3p_A 270 VKDVAFYDYEA--------------K---YI------DNKI-----------TMAIPAEIDPVIVEKMRDYAATAFRTL- 314 (383)
T ss_dssp C---------------------------------------------------CEESSCCCCHHHHHHHHHHHHHHHHHT-
T ss_pred ecCCCccchhh--------------c---cc------CCCe-----------eEEecCCCCHHHHHHHHHHHHHHHHHc-
Confidence 00000000000 0 00 0000 000000011233445555555555543
Q ss_pred cccccccCCCceeEEeeeEEeecCCceEEEEecCCCCCCCCChh
Q psy10924 190 SINYIDLRKNSFQLFGADFLIHENYQPCLIEVNNGPGLSPTTSI 233 (322)
Q Consensus 190 ~~~~~~~~~~~Fel~G~DfllD~~~kpwLIEVN~~P~l~~~~~~ 233 (322)
+|-.+.++||++|++++||+||||+.|+|+..+-.
T Consensus 315 ---------g~~G~~~vDf~~~~~g~~~vlEINtrPG~t~~S~~ 349 (383)
T 3k3p_A 315 ---------GCCGLSRCDFFLTEDGKVYLNELNTMPGFTQWSMY 349 (383)
T ss_dssp ---------TCCEEEEEEEEECTTCCEEEEEEESSCCCC--CHH
T ss_pred ---------CCceEEEEEEEEECCCCEEEEEeeCCCCCCcccHH
Confidence 34478899999999999999999999999876543
No 16
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=98.91 E-value=9.3e-09 Score=95.49 Aligned_cols=54 Identities=20% Similarity=0.292 Sum_probs=37.7
Q ss_pred ceEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCC----CCCceeEeeccccccccCCceeeEE
Q psy10924 29 NVWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNL----TCPRCVVQKYIEKPLLIHGVKFDLR 88 (322)
Q Consensus 29 ~~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~----~~~~~IvQkYI~~PlLi~grKFDiR 88 (322)
..+|+||..++.|+|+.++++.+++...+..-... ....++||+||+ |..+++.
T Consensus 127 ~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~lvee~i~------G~e~~~~ 184 (334)
T 2r85_A 127 KPVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQEYVL------GVPVYPH 184 (334)
T ss_dssp SCEEEEECC----TTCEEESSHHHHHHHHHHHHCCCSGGGCCSEEEEECCC------CEEEEEE
T ss_pred CCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhcccCCCCcEEEEeccC------CceeEEE
Confidence 47999999999999999999999888766432100 136899999998 7777643
No 17
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=98.88 E-value=3.3e-08 Score=93.57 Aligned_cols=152 Identities=20% Similarity=0.242 Sum_probs=83.6
Q ss_pred CcceEEEeCCC--CCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEEEeeecCcEEEEe
Q psy10924 27 THNVWVLKPVA--NCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIWVY 104 (322)
Q Consensus 27 ~~~~WIvKP~~--~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvts~~pl~vy~y 104 (322)
-.-..|+||.. ||.|+|+.++.+.+++..+ ...++||+||+.+ | .|+|+||+-. ++.
T Consensus 161 lg~P~VvKP~~g~Gs~s~~v~~v~~~~~l~~~--------~~~~lvQefI~~~----G--~dirv~VvG~-----~v~-- 219 (346)
T 2q7d_A 161 LTFPFICKTRVAHGTNSHEMAIVFNQEGLNAI--------QPPCVVQNFINHN----A--VLYKVFVVGE-----SYT-- 219 (346)
T ss_dssp CCSSEEEECSBCSSTTCCEEEEECSGGGTTC----------CCEEEEECCCCT----T--EEEEEEEETT-----EEE--
T ss_pred CCCCEEEEecCCCcceeeeeEEecCHHHHHhc--------CCCEEEEEeeCCC----C--eEEEEEEECC-----EEE--
Confidence 34478999985 4558899999998876542 4579999999853 5 5999999732 221
Q ss_pred cceEEEecCCCCCCCcc-----cccccchhhhhhhhcccCCCCCCCCCCCccchHHHHHHHHHhcCChhhHHHHHHHHHH
Q psy10924 105 HEGYVRFCSKPYSNILL-----DEARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIMKAMEE 179 (322)
Q Consensus 105 ~~g~vR~s~~~y~~~~~-----d~~~HLTN~~iqk~~~~~~~~~~~~~~~~ws~~~~~~~L~~~~g~~~~~~~i~~~i~~ 179 (322)
++.|.+...+..... +-.+| |++ +. +...+ ..+.+.. +. . ..... .+.+++
T Consensus 220 --~~~r~sl~~~~~~~~~~~~~~f~s~--~~~--~~--g~~~~-~~~~~~~---~~------~-~~~~~-----~~el~~ 275 (346)
T 2q7d_A 220 --VVQRPSLKNFSAGTSDRESIFFNSH--NVS--KP--ESSSV-LTELDKI---EG------V-FERPS-----DEVIRE 275 (346)
T ss_dssp --EEEEECCCCCC----CCCCEEEEGG--GTS--ST--TCCCG-GGCCSCC---CS------C-CCCCC-----HHHHHH
T ss_pred --EEEEecCCCcCcCccccccccccce--eec--cC--Ccccc-ccccccc---cc------c-ccCCC-----hHHHHH
Confidence 134555443322110 00011 000 00 00000 0000000 00 0 00000 223455
Q ss_pred HHHHHHHHhccccccccCCCceeEEeeeEEeec-CCceEEEEecCCCCCCCCChhH
Q psy10924 180 SIVTIMRCAQSINYIDLRKNSFQLFGADFLIHE-NYQPCLIEVNNGPGLSPTTSII 234 (322)
Q Consensus 180 ~i~~~l~a~~~~~~~~~~~~~Fel~G~DfllD~-~~kpwLIEVN~~P~l~~~~~~~ 234 (322)
+...+.++..- .++|+|+++|+ ++++++||||+.|++.......
T Consensus 276 lA~~a~~alGl-----------~~~gvDii~~~~~g~~~VlEVN~~PG~~g~~~~~ 320 (346)
T 2q7d_A 276 LSRALRQALGV-----------SLFGIDIIINNQTGQHAVIDINAFPGYEGVSEFF 320 (346)
T ss_dssp HHHHHHHHHCC-----------CEEEEEEEECTTTCCEEEEEEEESCCCTTCTTHH
T ss_pred HHHHHHHHhCC-----------ceEeeEEEeecCCCCEEEEEEeCCccccccchHH
Confidence 55555555432 58899999997 6899999999999999875543
No 18
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=98.86 E-value=6.2e-08 Score=92.51 Aligned_cols=150 Identities=16% Similarity=0.193 Sum_probs=86.7
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCC-ceeeEEEEEEEeeecCcEEEEecceE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHG-VKFDLRVWYVITNIDKFKIWVYHEGY 108 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~g-rKFDiR~yvlvts~~pl~vy~y~~g~ 108 (322)
.+|+||..++.|+|+.++++.+++.+.+...... ...++||+||+ | + ++++-|+... ++ .+. .-+-
T Consensus 176 PvvVKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~-~~~vlvEe~I~------G~~--E~~v~vl~~~-~~-~~~--~~~e 242 (377)
T 1ehi_A 176 IVFVKAANQGSSVGISRVTNAEEYTEALSDSFQY-DYKVLIEEAVN------GAR--ELEVGVIGND-QP-LVS--EIGA 242 (377)
T ss_dssp CEEEEESSCCTTTTEEEECSHHHHHHHHHHHTTT-CSCEEEEECCC------CSC--EEEEEEEESS-SC-EEE--EEEE
T ss_pred CEEEEeCCCCCCcCEEEeCCHHHHHHHHHHHHhc-CCcEEEEcCCC------CCc--eEEEEEEcCC-Cc-EEE--eeEE
Confidence 5899999999999999999999998877642211 46899999998 5 5 6667766532 11 211 1111
Q ss_pred EEecCCCCCCCcccccccchhhhhhhhcccCCCCCCCCC-CCccchHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH
Q psy10924 109 VRFCSKPYSNILLDEARHLTNVRIQKQYRNVRDPPQLPA-ELMWDFKQLRDYFTKNMNLPRKWDMIMKAMEESIVTIMRC 187 (322)
Q Consensus 109 vR~s~~~y~~~~~d~~~HLTN~~iqk~~~~~~~~~~~~~-~~~ws~~~~~~~L~~~~g~~~~~~~i~~~i~~~i~~~l~a 187 (322)
+..........-.+- ..++.. + +.... ... ..-+++.+++++++..++++
T Consensus 243 i~~~~~~~~~~~~d~---------~~k~~~--------g~~~~~~-----------~Pa-~l~~~~~~~i~~~a~~~~~a 293 (377)
T 1ehi_A 243 HTVPNQGSGDGWYDY---------NNKFVD--------NSAVHFQ-----------IPA-QLSPEVTKEVKQMALDAYKV 293 (377)
T ss_dssp EECTTSSSSSCCCCH---------HHHTTC--------CTTCEEE-----------SSC-CCCHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCcCceeCH---------HhcccC--------CCCeeEE-----------eCC-CCCHHHHHHHHHHHHHHHHH
Confidence 221100000000000 000000 0 00000 000 01123345566666665554
Q ss_pred hccccccccCCCceeEEeeeEEeecCCceEEEEecCCCCCCCCC
Q psy10924 188 AQSINYIDLRKNSFQLFGADFLIHENYQPCLIEVNNGPGLSPTT 231 (322)
Q Consensus 188 ~~~~~~~~~~~~~Fel~G~DfllD~~~kpwLIEVN~~P~l~~~~ 231 (322)
. ++-.+.++||++|+++++||||||+.|++...+
T Consensus 294 l----------g~~G~~~vD~~~~~~g~~~vlEiN~rpg~t~~s 327 (377)
T 1ehi_A 294 L----------NLRGEARMDFLLDENNVPYLGEPNTLPGFTNMS 327 (377)
T ss_dssp T----------TCCEEEEEEEEECTTCCEEEEEEESSCCCSTTC
T ss_pred c----------CCCcEEEEEEEEeCCCCEEEEEEeCCCCCCccc
Confidence 3 344789999999999999999999999987653
No 19
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=98.86 E-value=6.2e-08 Score=89.20 Aligned_cols=54 Identities=22% Similarity=0.373 Sum_probs=38.8
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYV 92 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvl 92 (322)
.+|+||..++.|+|+.++++.+++.+.+...... ...++||+||+ |+ ++++.++
T Consensus 135 P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~~~-~~~~lvee~i~------G~--e~~v~v~ 188 (307)
T 3r5x_A 135 PLVVKPNSGGSSVGVKIVYDKDELISMLETVFEW-DSEVVIEKYIK------GE--EITCSIF 188 (307)
T ss_dssp SEEEEECC----CCCEEECSHHHHHHHHHHHHHH-CSEEEEEECCC------SE--EEEEEEE
T ss_pred CEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc-CCCEEEECCcC------CE--EEEEEEE
Confidence 5899999999999999999999888776542111 46899999998 64 7777764
No 20
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=98.83 E-value=4.4e-08 Score=93.54 Aligned_cols=166 Identities=16% Similarity=0.215 Sum_probs=96.1
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEEEeeecCcEEEEecceEE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIWVYHEGYV 109 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvts~~pl~vy~y~~g~v 109 (322)
.+|+||..++.|.||.++++.+++.+.+...... ...++||+||+ |+ ++++-|+... ...+.+.--+-+
T Consensus 190 PvvVKP~~ggss~GV~~v~~~~eL~~a~~~a~~~-~~~vlVEe~I~------G~--E~~v~vl~~~--~~~~~~~~~~ei 258 (373)
T 3lwb_A 190 PVFVKPARGGSSIGVSRVSSWDQLPAAVARARRH-DPKVIVEAAIS------GR--ELECGVLEMP--DGTLEASTLGEI 258 (373)
T ss_dssp CEEEEESBCSTTTTCEEECSGGGHHHHHHHHHTT-CSSEEEEECCE------EE--EEEEEEEECT--TSCEEECCCEEE
T ss_pred CEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc-CCCEEEeCCCC------Ce--EEEEEEEECC--CCceEEeeeeEE
Confidence 5899999999999999999999988776542211 56899999998 65 6666666532 121111122222
Q ss_pred Eec--CC----CCCCCcccccccchhhhhhhhcccCCCCCCCCCCCccchHHHHHHHHHhcCChhhHHHHHHHHHHHHHH
Q psy10924 110 RFC--SK----PYSNILLDEARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIMKAMEESIVT 183 (322)
Q Consensus 110 R~s--~~----~y~~~~~d~~~HLTN~~iqk~~~~~~~~~~~~~~~~ws~~~~~~~L~~~~g~~~~~~~i~~~i~~~i~~ 183 (322)
... .. -|+. ..++.. ++... .-....-+.+..+++++...
T Consensus 259 ~~~~~~~~~~~~~d~--------------~~ky~~--------~~~~~------------~~Pa~l~~~~~~~i~~~a~~ 304 (373)
T 3lwb_A 259 RVAGVRGREDSFYDF--------------ATKYLD--------DAAEL------------DVPAKVDDQVAEAIRQLAIR 304 (373)
T ss_dssp ECCSTTCSEESSSCH--------------HHHHTC--------TTCEE------------ESSCCCCHHHHHHHHHHHHH
T ss_pred EccCCCCccccccch--------------hhcccC--------CCceE------------EeCCCCCHHHHHHHHHHHHH
Confidence 222 11 0100 000000 00000 00001112344556666666
Q ss_pred HHHHhccccccccCCCceeEEeeeEEeecCCceEEEEecCCCCCCCCChhHH--H----HHHHHHHHHhhchhc
Q psy10924 184 IMRCAQSINYIDLRKNSFQLFGADFLIHENYQPCLIEVNNGPGLSPTTSIIA--K----KTTELLTDMVKVVTA 251 (322)
Q Consensus 184 ~l~a~~~~~~~~~~~~~Fel~G~DfllD~~~kpwLIEVN~~P~l~~~~~~~~--~----l~~~li~d~l~lv~d 251 (322)
++++. +|..+.++||++|+++. ||||||+.|+++..+-... . =.+.++..+++..+.
T Consensus 305 ~~~aL----------g~~G~~~vDf~~~~dg~-~vlEIN~~PG~t~~S~~p~~~~a~Gi~~~~li~~li~~a~~ 367 (373)
T 3lwb_A 305 AFAAI----------DCRGLARVDFFLTDDGP-VINEINTMPGFTTISMYPRMWAASGVDYPTLLATMIETTLA 367 (373)
T ss_dssp HHHHT----------TCCSEEEEEEEEETTEE-EEEEEESSCCCSTTSHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHh----------CCccEEEEEEEEECCCC-EEEEecCCCCCCcccHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 65553 34478999999999999 9999999999987653321 1 135556666555544
No 21
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=98.80 E-value=4.2e-08 Score=93.52 Aligned_cols=56 Identities=13% Similarity=0.328 Sum_probs=44.1
Q ss_pred ceEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCC-ceee-EEEEE
Q psy10924 29 NVWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHG-VKFD-LRVWY 91 (322)
Q Consensus 29 ~~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~g-rKFD-iR~yv 91 (322)
-.+|+||..++.|.|+.++++.+++.+.+...... ...++||+||+ | +-|. +++.|
T Consensus 186 ~PvvVKP~~g~ss~Gv~~v~~~~el~~a~~~~~~~-~~~vlVEe~I~------G~~E~svi~v~v 243 (367)
T 2pvp_A 186 FPFIVKPSNAGSSLGVNVVKEEKELIYALDSAFEY-SKEVLIEPFIQ------GVKEYNLAGCKI 243 (367)
T ss_dssp SCEEEEESSCCTTTTCEEESSTTSHHHHHHHHTTT-CSCEEEEECCT------TCEEEEEEEEEE
T ss_pred CCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhc-CCcEEEEeCCC------CCceeeEEEEEE
Confidence 36999999999999999999999888877643211 46899999998 7 6655 55555
No 22
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=98.74 E-value=4e-08 Score=91.17 Aligned_cols=50 Identities=22% Similarity=0.408 Sum_probs=40.3
Q ss_pred ceEEEeCCCCCCC---CCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEE
Q psy10924 29 NVWVLKPVANCSG---HGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYV 92 (322)
Q Consensus 29 ~~WIvKP~~~s~G---~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvl 92 (322)
-.+|+||..|+.| +|+.++.+.+++.. . ...+++|+||+.+ | +|+|++|+
T Consensus 136 ~P~vvKP~~g~g~~~s~gv~~v~~~~~l~~-------~-~~~~lvqe~i~~~----g--~~~~v~v~ 188 (324)
T 1z2n_X 136 LPFIVKPENAQGTFNAHQMKIVLEQEGIDD-------I-HFPCLCQHYINHN----N--KIVKVFCI 188 (324)
T ss_dssp SSEEEEESBCSSSSGGGEEEEECSGGGGTT-------C-CSSEEEEECCCCT----T--CEEEEEEE
T ss_pred CCEEEeeCCCCCCccceeeEEEeCHHHHhh-------c-CCCEEEEEccCCC----C--cEEEEEEE
Confidence 3599999999999 99999999877532 1 4689999999842 3 79999886
No 23
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=98.73 E-value=4e-09 Score=95.34 Aligned_cols=57 Identities=23% Similarity=0.229 Sum_probs=39.8
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhC---CCCCCCceeEeeccccccccCCceeeEEEEEE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTL---KNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYV 92 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~---~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvl 92 (322)
.+|+||..++.|+|+.++++.+++.+.+... .......+++|+||+ |..+++|++++
T Consensus 125 p~vvKp~~g~~~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvqe~i~------~~~~e~~v~v~ 184 (280)
T 1uc8_A 125 PVVLKPVIGSWGRLLAXXXXXXXXXXXXXXKEVLGGFQHQLFYIQEYVE------KPGRDIRVFVV 184 (280)
T ss_dssp SEEEECSBCCBCSHHHHHHHHHC------------CTTTTCEEEEECCC------CSSCCEEEEEE
T ss_pred CEEEEECCCCCcccceecccccccchhhhhHhhhcccCCCcEEEEeccC------CCCceEEEEEE
Confidence 5999999999999999998887777655431 100146899999998 45689999986
No 24
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=98.69 E-value=7e-07 Score=85.95 Aligned_cols=55 Identities=25% Similarity=0.224 Sum_probs=43.1
Q ss_pred eEEEeCCCCC-CCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEEEe
Q psy10924 30 VWVLKPVANC-SGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVIT 94 (322)
Q Consensus 30 ~WIvKP~~~s-~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvt 94 (322)
.+|+||..++ .|+|+.++++.+++.+.+..-. ...++||+||+. | .++.+.++..
T Consensus 162 P~VvKp~~gg~~g~Gv~~v~~~~el~~a~~~~~---~~~~lvEe~i~~-----~--~E~sv~v~~~ 217 (403)
T 3k5i_A 162 PLMLKSKTMAYDGRGNFRVNSQDDIPEALEALK---DRPLYAEKWAYF-----K--MELAVIVVKT 217 (403)
T ss_dssp SEEEEESSSCCTTTTEEEECSTTSHHHHHHHTT---TSCEEEEECCCE-----E--EEEEEEEEEC
T ss_pred CEEEEeCCCCcCCCCEEEECCHHHHHHHHHhcC---CCcEEEecCCCC-----C--eEEEEEEEEc
Confidence 4899998886 9999999999999888776532 568999999972 2 3666666654
No 25
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=98.68 E-value=4.9e-07 Score=87.56 Aligned_cols=54 Identities=19% Similarity=0.262 Sum_probs=42.9
Q ss_pred eEEEeCC-CCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEEE
Q psy10924 30 VWVLKPV-ANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVI 93 (322)
Q Consensus 30 ~WIvKP~-~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlv 93 (322)
.+|+||. .|+.|+|+.++++.+++.+.+..-. ...++||+||+. ..++.+.++.
T Consensus 173 P~VvKp~~~g~~G~Gv~~v~~~~el~~a~~~~~---~~~~lvEe~i~~-------~~Eisv~v~~ 227 (419)
T 4e4t_A 173 PGILKTARLGYDGKGQVRVSTAREARDAHAALG---GVPCVLEKRLPL-------KYEVSALIAR 227 (419)
T ss_dssp SEEEEESSSCCTTTTEEEECSHHHHHHHHHHTT---TCCEEEEECCCE-------EEEEEEEEEE
T ss_pred CEEEEecCCCCCCCceEEECCHHHHHHHHHhcC---CCcEEEeecCCC-------CeEEEEEEEE
Confidence 4899999 8999999999999999988876532 578999999982 2355555554
No 26
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=98.68 E-value=5.8e-07 Score=85.81 Aligned_cols=55 Identities=20% Similarity=0.320 Sum_probs=41.8
Q ss_pred eEEEeCCCCCC-CCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEEEe
Q psy10924 30 VWVLKPVANCS-GHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVIT 94 (322)
Q Consensus 30 ~WIvKP~~~s~-G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvt 94 (322)
.+|+||..+.. |+|+.++++.+++.+.+.... ...++||+||+ | ..++.+.++..
T Consensus 149 P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~---~~~~lvEe~i~------g-~~E~~v~~~~~ 204 (389)
T 3q2o_A 149 PSVLKTTTGGYDGKGQVVLRSEADVDEARKLAN---AAECILEKWVP------F-EKEVSVIVIRS 204 (389)
T ss_dssp SEEEEESSCCSSSCCEEEESSGGGHHHHHHHHH---HSCEEEEECCC------C-SEEEEEEEEEC
T ss_pred CEEEEeCCCCCCCCCeEEECCHHHHHHHHHhcC---CCCEEEEeccc------C-ceEEEEEEEEc
Confidence 48999999864 899999999999887765422 46899999998 3 13566666653
No 27
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=98.63 E-value=7.1e-07 Score=86.09 Aligned_cols=55 Identities=20% Similarity=0.378 Sum_probs=37.6
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCC----------CCCCCceeEeeccccccccCCceeeEEEE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLK----------NLTCPRCVVQKYIEKPLLIHGVKFDLRVW 90 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~----------~~~~~~~IvQkYI~~PlLi~grKFDiR~y 90 (322)
.+|+||..|+.|+|+.++++.+++.+.+..-. ......+++|+||+ |+-|.+.++
T Consensus 147 P~vvKp~~g~gs~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~~~~lvEe~i~------G~e~sv~~~ 211 (425)
T 3vot_A 147 PLVVKPVNGFSSQGVVRVDDRKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQFID------GPEFAIETL 211 (425)
T ss_dssp SEEEEESCC-----CEEECSHHHHHHHHHHHHHHTTSSHHHHHTTCCCEEEEECCC------SCEEEEEEE
T ss_pred cEEEEECCCCCCCCceEechHHHHHHHHHHHHhhhhhhhhhhccCCCcEEEEEEec------CcEEEEEEE
Confidence 58999999999999999999999887665310 00146799999998 777776554
No 28
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=98.59 E-value=5.2e-07 Score=82.59 Aligned_cols=58 Identities=24% Similarity=0.265 Sum_probs=44.2
Q ss_pred eEEEeCCCCCCCCCeEEeC-ChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEE
Q psy10924 30 VWVLKPVANCSGHGIRIYR-QLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYV 92 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~-~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvl 92 (322)
.+|+||..|+.|+|+.+++ +.+++...+..-.......+++|+||+-+ +.+|+|+.++
T Consensus 156 p~vvKP~~g~~g~Gv~~v~~~~~~l~~~~~~~~~~~~~~~lvqe~i~~~-----~~~~~~v~~~ 214 (316)
T 1gsa_A 156 DIILKPLDGMGGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAI-----KDGDKRVLVV 214 (316)
T ss_dssp SEEEECSSCCTTTTCEEECTTCTTHHHHHHHHTTTTTSCEEEEECCGGG-----GGCEEEEEEE
T ss_pred CEEEEECCCCCcccEEEecCChHHHHHHHHHHHhcCCceEEEecccCCC-----CCCCEEEEEE
Confidence 4999999999999999998 77777665543211113689999999831 3689999886
No 29
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=98.58 E-value=2.4e-07 Score=87.97 Aligned_cols=133 Identities=17% Similarity=0.210 Sum_probs=76.6
Q ss_pred ceEEEeCCCCC-CCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEEEeeecCcEEEEecce
Q psy10924 29 NVWVLKPVANC-SGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIWVYHEG 107 (322)
Q Consensus 29 ~~WIvKP~~~s-~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvts~~pl~vy~y~~g 107 (322)
-.+|+||..++ .|+|+.++++.+++.+.+. ..+++|+||+. | .++++.++....+...++-..+-
T Consensus 133 ~P~vvKp~~~~y~g~Gv~~v~~~~el~~~~~-------~~~lvEe~i~~-----g--~e~sv~~~~~~~G~~~~~~~~~~ 198 (380)
T 3ax6_A 133 FPVVQKARKGGYDGRGVFIIKNEKDLENAIK-------GETYLEEFVEI-----E--KELAVMVARNEKGEIACYPVVEM 198 (380)
T ss_dssp SSEEEEESCCC-----EEEECSGGGGGGCCC-------SSEEEEECCCE-----E--EEEEEEEEECSSCCEEEEEEEEE
T ss_pred CCEEEEecCCCCCCCCeEEECCHHHHHHHhc-------CCEEEEeccCC-----C--eeEEEEEEECCCCCEEEECCeee
Confidence 36999999999 9999999999988765432 57999999983 3 47888877642211222110000
Q ss_pred EEEecCCCCCCCcccccccchhhhhhhhcccCCCCCCCCCCCccchHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH
Q psy10924 108 YVRFCSKPYSNILLDEARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIMKAMEESIVTIMRC 187 (322)
Q Consensus 108 ~vR~s~~~y~~~~~d~~~HLTN~~iqk~~~~~~~~~~~~~~~~ws~~~~~~~L~~~~g~~~~~~~i~~~i~~~i~~~l~a 187 (322)
+ +..... . + ... + ... ...+++.+++++++..++.+
T Consensus 199 ~--~~~~~~----~----~--------------------~~~-~------------~p~-~l~~~~~~~~~~~a~~~~~~ 234 (380)
T 3ax6_A 199 Y--FDEDAN----I----C--------------------DTV-I------------APA-RIEEKYSKIAREIATSVVEA 234 (380)
T ss_dssp C--------------------------------------CEE-E------------ESC-SSCHHHHHHHHHHHHHHHHH
T ss_pred e--ecccCC----e----e--------------------EEE-E------------CCC-CCCHHHHHHHHHHHHHHHHH
Confidence 0 000000 0 0 000 0 000 01122334455555555554
Q ss_pred hccccccccCCCceeEEeeeEEeecCCceEEEEecCCCCCCC
Q psy10924 188 AQSINYIDLRKNSFQLFGADFLIHENYQPCLIEVNNGPGLSP 229 (322)
Q Consensus 188 ~~~~~~~~~~~~~Fel~G~DfllD~~~kpwLIEVN~~P~l~~ 229 (322)
. ++...+++||++|+++++|+||||..|+.+.
T Consensus 235 l----------g~~G~~~vd~~~~~~g~~~viEiN~R~~~~~ 266 (380)
T 3ax6_A 235 L----------EGVGIFGIEMFLTKQGEILVNEIAPRPHNSG 266 (380)
T ss_dssp H----------TCCEEEEEEEEEETTSCEEEEEEESSCCGGG
T ss_pred C----------CCeEEEEEEEEEeCCCcEEEEEecCCCCCCc
Confidence 3 2347899999999999999999999998864
No 30
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=98.53 E-value=1.8e-06 Score=83.87 Aligned_cols=59 Identities=22% Similarity=0.366 Sum_probs=44.4
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCC-----CCCCceeEeeccccccccCCceeeEEEEEEEee
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-----LTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITN 95 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~-----~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvts 95 (322)
.+|+||..|+.|+|+.++++.+++.+.+..... .....+++|+||+.| + ++.+.++...
T Consensus 158 PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~-----~--e~~v~v~~d~ 221 (446)
T 3ouz_A 158 PVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNP-----R--HIEVQVIGDS 221 (446)
T ss_dssp SEEEEETTCCTTCSEEEECSGGGHHHHHHHHHHHHHHHHSCCCEEEEECCSSC-----E--EEEEEEEECT
T ss_pred CEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCC-----c--EEEEEEEEcC
Confidence 499999999999999999999998877653110 014679999999842 3 6777776643
No 31
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=98.52 E-value=2.6e-06 Score=81.35 Aligned_cols=56 Identities=21% Similarity=0.371 Sum_probs=39.3
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCC-CCCCceeEeeccccccccCCceeeEEEEE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-LTCPRCVVQKYIEKPLLIHGVKFDLRVWY 91 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~-~~~~~~IvQkYI~~PlLi~grKFDiR~yv 91 (322)
.+|+||..++.|+|+.++++.+++.+.+..... .....+++|+||+ |..|++.+++
T Consensus 146 P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~------g~e~sv~~~~ 202 (403)
T 4dim_A 146 PVIVKATDLQGSKGIYIAKKEEEAIDGFNETMNLTKRDYCIVEEFIE------GYEFGAQAFV 202 (403)
T ss_dssp SEEEECSCC-----CEEESSHHHHHHHHHHHHHHCSSSCCEEEECCC------SEEEEEEEEE
T ss_pred CEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhcCcCCcEEEEEccC------CcEEEEEEEE
Confidence 599999999999999999999998876654110 0146799999998 7778877664
No 32
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=98.48 E-value=3e-06 Score=82.33 Aligned_cols=58 Identities=19% Similarity=0.282 Sum_probs=43.6
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCC-----CCCCCceeEeeccccccccCCceeeEEEEEEEe
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLK-----NLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVIT 94 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~-----~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvt 94 (322)
.+|+||..++.|+|+.++++.+++.+.+.... ......++||+||+.+ -++++-++..
T Consensus 153 PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~-------~e~~v~v~~~ 215 (451)
T 2vpq_A 153 PVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENF-------RHIEIQIVGD 215 (451)
T ss_dssp SEEEEETTCCTTCSEEEESSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCCSE-------EEEEEEEEEC
T ss_pred cEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCC-------eEEEEEEEEc
Confidence 49999999999999999999998887665310 0014689999999832 2677777764
No 33
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=98.46 E-value=2.6e-06 Score=82.74 Aligned_cols=56 Identities=18% Similarity=0.314 Sum_probs=42.2
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCC-----CCCCceeEeeccccccccCCceeeEEEEEEE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-----LTCPRCVVQKYIEKPLLIHGVKFDLRVWYVI 93 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~-----~~~~~~IvQkYI~~PlLi~grKFDiR~yvlv 93 (322)
.+|+||..++.|+|+.++++.+++.+.+..-.. .....+|||+||+ |+ ++.+.++.
T Consensus 144 PvVvKp~~~~gg~GV~iv~~~~el~~a~~~~~~~~~~g~~~~~vlvEe~i~------G~--E~sv~~~~ 204 (431)
T 3mjf_A 144 PIVIKADGLAAGKGVIVAMTQEEAETAVNDMLAGNAFGDAGHRIVVEEFLD------GE--EASFIVMV 204 (431)
T ss_dssp SEEEEESSSCTTCSEEEECSHHHHHHHHHHHHTTHHHHCCCCCEEEEECCC------SE--EEEEEEEE
T ss_pred eEEEEECCCCCCCcEEEeCCHHHHHHHHHHHHhhccccCCCCeEEEEEeeC------Cc--EEEEEEEE
Confidence 499999999999999999999988876653110 0035899999998 65 55555554
No 34
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=98.45 E-value=1.2e-06 Score=84.42 Aligned_cols=46 Identities=20% Similarity=0.395 Sum_probs=36.6
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCC---C--CCCceeEeeccc
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN---L--TCPRCVVQKYIE 75 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~---~--~~~~~IvQkYI~ 75 (322)
.+|+||..++.|+|+.++++.+++.+.+..-.. . ....++||+||+
T Consensus 139 PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~ 189 (424)
T 2yw2_A 139 PIVVKADGLAAGKGAVVCETVEKAIETLDRFLNKKIFGKSSERVVIEEFLE 189 (424)
T ss_dssp SEEEEESSCCTTCSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC
T ss_pred cEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC
Confidence 499999999999999999999988877653211 0 025799999997
No 35
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=98.45 E-value=5e-06 Score=78.91 Aligned_cols=58 Identities=21% Similarity=0.309 Sum_probs=40.2
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCC---CCCceeEeeccccccccCCceeeEEEEEEEe
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNL---TCPRCVVQKYIEKPLLIHGVKFDLRVWYVIT 94 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~---~~~~~IvQkYI~~PlLi~grKFDiR~yvlvt 94 (322)
.+|+||..++.|+|+.++++.+++.+.+...... ....++||+||+. |+ ++++.++..
T Consensus 150 P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~-----g~--E~sv~~~~~ 210 (391)
T 1kjq_A 150 PCIVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKF-----DF--EITLLTVSA 210 (391)
T ss_dssp SEEEEESCC---CCCEEECSGGGHHHHHHHHHHHSGGGCCCEEEEECCCC-----SE--EEEEEEEEE
T ss_pred CEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEEecCC-----Ce--EEEEEEEEe
Confidence 4999999999999999999998888766531100 1468999999983 43 666666653
No 36
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=98.45 E-value=2.1e-06 Score=81.71 Aligned_cols=55 Identities=16% Similarity=0.326 Sum_probs=43.0
Q ss_pred eEEEeCCCCC-CCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEEEe
Q psy10924 30 VWVLKPVANC-SGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVIT 94 (322)
Q Consensus 30 ~WIvKP~~~s-~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvt 94 (322)
.+|+||..+. .|+|+.++++.+++.+.+..-. ...+|+|+||+ | ..++.+.++..
T Consensus 147 P~vvKp~~gg~~g~Gv~~v~~~~el~~a~~~~~---~~~~ivEe~i~------g-~~E~sv~~~~~ 202 (377)
T 3orq_A 147 PFIVKTRFGGYDGKGQVLINNEKDLQEGFKLIE---TSECVAEKYLN------I-KKEVSLTVTRG 202 (377)
T ss_dssp SEEEEESSSCCTTTTEEEECSTTSHHHHHHHHT---TSCEEEEECCC------E-EEEEEEEEEEC
T ss_pred CEEEEeCCCCCCCCCeEEECCHHHHHHHHHhcC---CCcEEEEccCC------C-CEEEEEEEEEe
Confidence 4899999985 8999999999999887776432 46899999998 2 24666666643
No 37
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=98.45 E-value=2.8e-07 Score=86.95 Aligned_cols=56 Identities=14% Similarity=0.212 Sum_probs=21.9
Q ss_pred eEEEeCCCCC-CCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEEEe
Q psy10924 30 VWVLKPVANC-SGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVIT 94 (322)
Q Consensus 30 ~WIvKP~~~s-~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvt 94 (322)
.+|+||..++ .|+|+.++++.+++.+.+..-. ....+++|+||+. |+ ++++.++..
T Consensus 128 P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~--~~~~~lvEe~i~~-----g~--e~sv~~~~d 184 (365)
T 2z04_A 128 PVVIKAEKLGYDGKGQYRIKKLEDANQVVKNHD--KEESFIIEEFVKF-----EA--EISCIGVRD 184 (365)
T ss_dssp CEEEECC--------------------------------CEEEECCCC-----SE--EEEEEEEEC
T ss_pred CEEEEEcCCCcCCCCeEEECCHHHHHHHHHHhc--cCCCEEEEccCCC-----CE--EEEEEEEEC
Confidence 5999999999 9999999999988887665321 1468999999983 44 777777764
No 38
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=98.44 E-value=5.5e-06 Score=78.20 Aligned_cols=56 Identities=16% Similarity=0.175 Sum_probs=40.0
Q ss_pred ceEEEeCCCCC-CCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEEEe
Q psy10924 29 NVWVLKPVANC-SGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVIT 94 (322)
Q Consensus 29 ~~WIvKP~~~s-~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvt 94 (322)
-.+|+||..++ .|+|+.++++.+++.+.+..-. ...+++|+||+. |+ ++.+.++..
T Consensus 132 ~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~---~~~~lvEe~i~~-----g~--e~sv~~~~d 188 (369)
T 3aw8_A 132 LPALLKTRRGGYDGKGQALVRTEEEALEALKALG---GRGLILEGFVPF-----DR--EVSLLAVRG 188 (369)
T ss_dssp SSEEEEECCC------EEEECSHHHHHHHHTTTC---SSSEEEEECCCC-----SE--EEEEEEEEC
T ss_pred CCEEEEEcCCCCCcceEEEECCHHHHHHHHHhcC---CCcEEEEEcCCC-----CE--EEEEEEEEC
Confidence 36999999999 9999999999999988876432 468999999983 55 566666653
No 39
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=98.43 E-value=2.3e-06 Score=83.15 Aligned_cols=58 Identities=24% Similarity=0.351 Sum_probs=43.7
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCC-----CCCCCceeEeeccccccccCCceeeEEEEEEEe
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLK-----NLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVIT 94 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~-----~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvt 94 (322)
.+|+||..++.|+|+.++++.+++.+.+.... ......++||+||+.+ + ++++-++..
T Consensus 153 PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~-----~--e~~v~v~~~ 215 (451)
T 1ulz_A 153 PVLLKATAGGGGRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIENP-----K--HIEYQVLGD 215 (451)
T ss_dssp SEEEEECSSSSCCSCEEESSHHHHHHHHHHHHHHHHHTTSCCCEEEEECCCSC-----E--EEEEEEEEC
T ss_pred CEEEEECCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEcccCC-----e--EEEEEEEEc
Confidence 49999999999999999999988877664310 0114689999999832 3 677777764
No 40
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=98.43 E-value=3.2e-06 Score=81.26 Aligned_cols=56 Identities=25% Similarity=0.382 Sum_probs=43.5
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCC-CCCCceeEeeccccccccCCceeeEEEEEEE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-LTCPRCVVQKYIEKPLLIHGVKFDLRVWYVI 93 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~-~~~~~~IvQkYI~~PlLi~grKFDiR~yvlv 93 (322)
.+|+||..++.|+|+.++++.+++.+.+..-.. .....++||+||+ |+ ++++.++.
T Consensus 138 P~vvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~------g~--E~sv~~~~ 194 (417)
T 2ip4_A 138 PVVVKDSGLAAGKGVTVAFDLHQAKQAVANILNRAEGGEVVVEEYLE------GE--EATVLALT 194 (417)
T ss_dssp SEEEECTTSCSSTTCEEESCHHHHHHHHHHHTTSSSCCCEEEEECCC------SC--EEEEEEEE
T ss_pred CEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHhhccCCeEEEEECcc------Cc--EEEEEEEE
Confidence 599999999999999999999998877654210 0026899999998 54 66776665
No 41
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=98.42 E-value=2.2e-06 Score=83.52 Aligned_cols=56 Identities=16% Similarity=0.337 Sum_probs=41.6
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCC---CC--CCCceeEeeccccccccCCceeeEEEEEEE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLK---NL--TCPRCVVQKYIEKPLLIHGVKFDLRVWYVI 93 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~---~~--~~~~~IvQkYI~~PlLi~grKFDiR~yvlv 93 (322)
.+|+||..++.|+|+.++++.+++.+.+..-. .. ....+|||+||+ |+-+ .+.+++
T Consensus 160 PvVvKp~~~~gg~GV~iv~~~eel~~a~~~~~~~~~~g~~~~~vlvEe~i~------G~E~--sv~~~~ 220 (442)
T 3lp8_A 160 PLVVKADGLAQGKGTVICHTHEEAYNAVDAMLVHHKFGEAGCAIIIEEFLE------GKEI--SFFTLV 220 (442)
T ss_dssp SEEEEESSCCTTTSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC------SEEE--EEEEEE
T ss_pred cEEEeECCCCCCCeEEEeCCHHHHHHHHHHHHhhcccCCCCCeEEEEEeec------CcEE--EEEEEE
Confidence 49999999999999999999998887665311 01 025799999998 6544 444444
No 42
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=98.41 E-value=4.2e-06 Score=81.43 Aligned_cols=56 Identities=18% Similarity=0.358 Sum_probs=37.9
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCC---CC--CCCceeEeeccccccccCCceeeEEEEEEE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLK---NL--TCPRCVVQKYIEKPLLIHGVKFDLRVWYVI 93 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~---~~--~~~~~IvQkYI~~PlLi~grKFDiR~yvlv 93 (322)
.+|+||..++.|+|+.++++.+++.+.+..-. .. ....++||+||+ |+ ++.+.++.
T Consensus 160 PvVvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~------G~--E~sv~~~~ 220 (451)
T 2yrx_A 160 PIVIKADGLAAGKGVTVAQTVEEALAAAKAALVDGQFGTAGSQVVIEEYLE------GE--EFSFMAFV 220 (451)
T ss_dssp SEEEEECC----CCEEEESSHHHHHHHHHHHHHHSCCBTTBCCEEEEECCC------SE--EEEEEEEE
T ss_pred cEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhccccCCCCCeEEEEECCc------Cc--EEEEEEEE
Confidence 59999999999999999999998887664310 00 136899999998 65 55555554
No 43
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=98.41 E-value=5.6e-06 Score=82.71 Aligned_cols=143 Identities=15% Similarity=0.185 Sum_probs=79.1
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCC-CCCCceeEeeccccccccCCceeeEEEEEEEeeecCcEEEEecceE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-LTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIWVYHEGY 108 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~-~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvts~~pl~vy~y~~g~ 108 (322)
.+|+||..|+.|+|+.++++.+++.+.+..-.. .....++||+||+.+ + ++.+-++...... .+.++
T Consensus 230 PvVVKp~~ggGG~Gv~iv~~~~eL~~a~~~~~~~~~~~~vlVEe~I~g~-----r--ei~V~vl~d~~G~-vv~l~---- 297 (540)
T 3glk_A 230 PLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQHA-----R--HLEVQILADQYGN-AVSLF---- 297 (540)
T ss_dssp SEEEEETTCC----EEEECSTTTHHHHHHHHHHHSTTCCEEEEECCSSE-----E--EEEEEEEECTTSC-EEEEE----
T ss_pred cEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhhccCCCEEEEEecCCC-----c--EEEEEEEEcCCCC-EEEEe----
Confidence 389999999999999999999988877654110 014679999999831 3 6666666643222 22221
Q ss_pred EEecCCCCCCCcccccccchhhhhhhhcccCCCCCCCCCCCccchHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHh
Q psy10924 109 VRFCSKPYSNILLDEARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIMKAMEESIVTIMRCA 188 (322)
Q Consensus 109 vR~s~~~y~~~~~d~~~HLTN~~iqk~~~~~~~~~~~~~~~~ws~~~~~~~L~~~~g~~~~~~~i~~~i~~~i~~~l~a~ 188 (322)
.|-|+. |..+.... .. .........+.++|.+.+...+++.
T Consensus 298 ~rd~s~------------------qr~~~k~i------e~---------------~Pa~~l~~~~~~~l~~~a~~~~~al 338 (540)
T 3glk_A 298 GRDCSI------------------QRRHQKIV------EE---------------APATIAPLAIFEFMEQCAIRLAKTV 338 (540)
T ss_dssp EEEEEE------------------C---CCSE------EE---------------ESCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred ceeeee------------------eecccceE------Ee---------------cCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 122211 00000000 00 0000001223344555555554443
Q ss_pred ccccccccCCCceeEEeeeEEeecCCceEEEEecCCCCCCCCChhHH
Q psy10924 189 QSINYIDLRKNSFQLFGADFLIHENYQPCLIEVNNGPGLSPTTSIIA 235 (322)
Q Consensus 189 ~~~~~~~~~~~~Fel~G~DfllD~~~kpwLIEVN~~P~l~~~~~~~~ 235 (322)
+.....++||++|+++++|+||||..|+-+ .+++.
T Consensus 339 ----------G~~G~~~VEf~~d~dg~~~~lEiNpR~~~~--~~vte 373 (540)
T 3glk_A 339 ----------GYVSAGTVEYLYSQDGSFHFLELNPRLQVE--HPCTE 373 (540)
T ss_dssp ----------TCCEEEEEEEEEETTSCEEEEEEECSCCTT--HHHHH
T ss_pred ----------CCccceEEEEEEcCCCCEEEEEEECCCCCc--chhhH
Confidence 233677899999999999999999999754 34444
No 44
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=98.40 E-value=6.8e-06 Score=79.05 Aligned_cols=147 Identities=15% Similarity=0.146 Sum_probs=81.6
Q ss_pred ceEEEeCCCCCCCCCeEEeCChhHHHHHHhhCC----CCC-CCceeEeeccccccccCCceeeEEEEEEEeeecCcEEEE
Q psy10924 29 NVWVLKPVANCSGHGIRIYRQLEDIKRAIGTLK----NLT-CPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIWV 103 (322)
Q Consensus 29 ~~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~----~~~-~~~~IvQkYI~~PlLi~grKFDiR~yvlvts~~pl~vy~ 103 (322)
-.+|+||..++.|+|+.++++.+++.+.+..-. ... ...++||+||+ |+ ++.+.++.. .-.++.
T Consensus 142 ~PvvvKp~~~~gg~Gv~~v~~~~el~~a~~~~~~~~~~~g~~~~vlvEe~i~------G~--E~sv~~~~d---g~~~~~ 210 (412)
T 1vkz_A 142 PPYVIKADGLARGKGVLILDSKEETIEKGSKLIIGELIKGVKGPVVIDEFLA------GN--ELSAMAVVN---GRNFVI 210 (412)
T ss_dssp SSEEEEESSCCSSCCEEEESSHHHHHHHHHHHHHTSSSTTCCSCEEEEECCC------SE--EEEEEEEEE---TTEEEE
T ss_pred CCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECCc------Cc--EEEEEEEEC---CCEEEE
Confidence 369999999999999999999998887654310 110 13899999998 65 455555542 112221
Q ss_pred ecceEEEecCCCCCC-CcccccccchhhhhhhhcccCCCCCCCCCCCccchHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q psy10924 104 YHEGYVRFCSKPYSN-ILLDEARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIMKAMEESIV 182 (322)
Q Consensus 104 y~~g~vR~s~~~y~~-~~~d~~~HLTN~~iqk~~~~~~~~~~~~~~~~ws~~~~~~~L~~~~g~~~~~~~i~~~i~~~i~ 182 (322)
.- ....+.. .+.+...| + +.+... .... ..+++..++++++.
T Consensus 211 ~~------~~~~~~~~~~~~~~~~------------~--------g~~~~~----------~P~~-l~~~~~~~i~~~a~ 253 (412)
T 1vkz_A 211 LP------FVRDYKRLMDGDRGPN------------T--------GGMGSW----------GPVE-IPSDTIKKIEELFD 253 (412)
T ss_dssp CC------CCEECCEEETTTEEEE------------C--------SCSEEE----------ECCC-CCHHHHHHHHHHHH
T ss_pred ee------eeEeeeeccCCCCCCC------------C--------CCceEE----------ECCC-CCHHHHHHHHHHHH
Confidence 10 0000000 00000000 0 000000 0000 11233445566666
Q ss_pred HHHHHhccccccccCCCceeEEeeeEEeecCCceEEEEecCCCCCCC
Q psy10924 183 TIMRCAQSINYIDLRKNSFQLFGADFLIHENYQPCLIEVNNGPGLSP 229 (322)
Q Consensus 183 ~~l~a~~~~~~~~~~~~~Fel~G~DfllD~~~kpwLIEVN~~P~l~~ 229 (322)
.++.+... ...+.-..+++||++++++ |++||||..|+...
T Consensus 254 ~~~~~l~~-----~g~~~~G~~~ve~~~~~~g-~~viEiN~R~g~~~ 294 (412)
T 1vkz_A 254 KTLWGVEK-----EGYAYRGFLYLGLMLHDGD-PYILEYNVRLGDPE 294 (412)
T ss_dssp HHHHHHHH-----TTCCCEEEEEEEEEEETTE-EEEEEEESSCCTTH
T ss_pred HHHHHHHh-----cCCCcEEEEEEEEEEECCC-cEEEEEecCCCCCc
Confidence 66665532 0113448899999999998 99999999998653
No 45
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=98.38 E-value=3.1e-06 Score=81.39 Aligned_cols=56 Identities=14% Similarity=0.328 Sum_probs=42.2
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCC---C--CCCceeEeeccccccccCCceeeEEEEEEE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN---L--TCPRCVVQKYIEKPLLIHGVKFDLRVWYVI 93 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~---~--~~~~~IvQkYI~~PlLi~grKFDiR~yvlv 93 (322)
.+|+||..++.|+|+.++++.+++.+.+..-.. . ....++||+||+ |+ ++++.++.
T Consensus 139 P~vvKp~~~~~g~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~------g~--E~sv~~~~ 199 (422)
T 2xcl_A 139 PIVIKADGLAAGKGVTVAMTEEEAIACLHDFLEDEKFGDASASVVIEEYLS------GE--EFSLMAFV 199 (422)
T ss_dssp SEEEEESSCGGGTCEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC------SE--EEEEEEEE
T ss_pred CEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCc------Cc--EEEEEEEE
Confidence 499999999999999999999988876653210 0 036799999998 55 55555554
No 46
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=98.37 E-value=5.6e-07 Score=93.22 Aligned_cols=57 Identities=28% Similarity=0.457 Sum_probs=44.8
Q ss_pred cceEEEeCCCCCCCCCeEEeC---ChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEEE
Q psy10924 28 HNVWVLKPVANCSGHGIRIYR---QLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVI 93 (322)
Q Consensus 28 ~~~WIvKP~~~s~G~GI~~~~---~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlv 93 (322)
...+|+||..|+.|+||.+++ +.+++.+.+...... ...++||+||+ |+ |+|+.|+-
T Consensus 520 g~PvVVKP~~G~~G~GV~iv~~~~s~eel~~a~~~~~~~-~~~vlVEefI~------G~--E~~v~Vvg 579 (750)
T 3ln6_A 520 DKPIVVKPKSTNFGLGISIFKTSANLASYEKAIDIAFTE-DSAILVEEYIE------GT--EYRFFVLE 579 (750)
T ss_dssp SSCEEEEETTCCSSSSCEEESSCCCHHHHHHHHHHHHHH-CSEEEEEECCC------SE--EEEEEEET
T ss_pred CCcEEEEeCCCCCCCCEEEEeCCCCHHHHHHHHHHHHhh-CCcEEEEeccC------CC--EEEEEEEC
Confidence 346999999999999999998 788877766531101 46899999998 64 99998873
No 47
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=98.37 E-value=6.5e-06 Score=82.96 Aligned_cols=142 Identities=15% Similarity=0.159 Sum_probs=83.5
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCC-CCCCceeEeeccccccccCCceeeEEEEEEEeeecCcEEEEecceE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-LTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIWVYHEGY 108 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~-~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvts~~pl~vy~y~~g~ 108 (322)
.+|+||..|+.|+|+.++++.+++.+.+..-.. .....++||+||+.| + ++.+-++....... +.++
T Consensus 246 PvVVKp~~GgGGkGv~iV~s~eEL~~a~~~a~~~~~~~~vlVEeyI~g~-----r--ei~V~vl~D~~G~v-v~l~---- 313 (587)
T 3jrx_A 246 PLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQHA-----R--HLEVQILADQYGNA-VSLF---- 313 (587)
T ss_dssp SEEEEETTCCSSSSEEEECSTTTHHHHHHHHHHHSTTCCEEEEECCCSC-----E--EEEEEEEECSSSCE-EEEE----
T ss_pred eEEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHhhccCCCEEEEEecCCC-----c--EEEEEEEEcCCCCE-EEEe----
Confidence 389999999999999999999988877654110 014689999999842 3 66666666432222 2221
Q ss_pred EEecCC-CCCCCcccccccchhhhhhhhcccCCCCCCCCCCCccchHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH
Q psy10924 109 VRFCSK-PYSNILLDEARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIMKAMEESIVTIMRC 187 (322)
Q Consensus 109 vR~s~~-~y~~~~~d~~~HLTN~~iqk~~~~~~~~~~~~~~~~ws~~~~~~~L~~~~g~~~~~~~i~~~i~~~i~~~l~a 187 (322)
.|-|+. .+. ||..+.. ........+.++|.+.+..++++
T Consensus 314 ~rd~siqrr~---------------qk~ie~a-------------------------Pa~~l~~~~~~~i~~~A~~~a~a 353 (587)
T 3jrx_A 314 GRDCSIQRRH---------------QKIVEEA-------------------------PATIAPLAIFEFMEQCAIRLAKT 353 (587)
T ss_dssp EEEEEEESSS---------------CEEEEEE-------------------------SCCSSCHHHHHHHHHHHHHHHHH
T ss_pred eeeccccccc---------------cceeEec-------------------------CCCCCCHHHHHHHHHHHHHHHHH
Confidence 121210 000 0000000 00000122334455555555544
Q ss_pred hccccccccCCCceeEEeeeEEeecCCceEEEEecCCCCCCCCChhHH
Q psy10924 188 AQSINYIDLRKNSFQLFGADFLIHENYQPCLIEVNNGPGLSPTTSIIA 235 (322)
Q Consensus 188 ~~~~~~~~~~~~~Fel~G~DfllD~~~kpwLIEVN~~P~l~~~~~~~~ 235 (322)
. +.....++||++|.++++|+||||..|+-+ .+++.
T Consensus 354 l----------Gy~G~~~VEfl~d~dG~~yflEINpRl~~e--~~vte 389 (587)
T 3jrx_A 354 V----------GYVSAGTVEYLYSQDGSFHFLELNPRLQVE--HPCTE 389 (587)
T ss_dssp H----------TCCEEEEEEEEECSSSCEEEEEEESSCCTT--HHHHH
T ss_pred c----------CCcceeEEEEEEeCCCCEEEEEEeCCCCCc--cceec
Confidence 3 223677899999999999999999999754 34444
No 48
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=98.34 E-value=6.6e-06 Score=79.42 Aligned_cols=57 Identities=23% Similarity=0.263 Sum_probs=36.0
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCC---CCCceeEeeccccccccCCceeeEEEEEEE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNL---TCPRCVVQKYIEKPLLIHGVKFDLRVWYVI 93 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~---~~~~~IvQkYI~~PlLi~grKFDiR~yvlv 93 (322)
.+|+||..++.|+|+.++++.+++.+.+...... ....++||+||+. |+ ++++.++.
T Consensus 158 P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~-----g~--E~sv~~~~ 217 (433)
T 2dwc_A 158 PCHTKAIMSSSGKGSYFVKGPEDIPKAWEEAKTKARGSAEKIIVEEHIDF-----DV--EVTELAVR 217 (433)
T ss_dssp SEEEEECCC------EEECSGGGHHHHHHC---------CCEEEEECCCC-----SE--EEEECCEE
T ss_pred CEEEEECCCcCCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEccCCC-----Ce--eEEEEEEe
Confidence 4999999999999999999999998877642110 1367999999983 43 55555554
No 49
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=98.30 E-value=1.1e-05 Score=78.54 Aligned_cols=55 Identities=15% Similarity=0.336 Sum_probs=39.0
Q ss_pred EEEeCCCCCCCCCeEEeCChhHHHHHHhhCCC---C--CCCceeEeeccccccccCCceeeEEEEEEE
Q psy10924 31 WVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN---L--TCPRCVVQKYIEKPLLIHGVKFDLRVWYVI 93 (322)
Q Consensus 31 WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~---~--~~~~~IvQkYI~~PlLi~grKFDiR~yvlv 93 (322)
+|+||..++.|+|+.++++.+++.+.+..-.. . ....++||+||+ |+ ++.+.++.
T Consensus 167 vvvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~------G~--E~sv~~~~ 226 (452)
T 2qk4_A 167 LVVKASGLAAGKGVIVAKSKEEACKAVQEIMQEKAFGAAGETIVIEELLD------GE--EVSCLCFT 226 (452)
T ss_dssp EEEEESBC---CCEEECSSHHHHHHHHHHHTTC-------CCEEEEECCC------SE--EEEEEEEE
T ss_pred EEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC------CC--eEEEEEEE
Confidence 99999999999999999999998877653211 0 036799999998 54 66666664
No 50
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=98.29 E-value=9.8e-07 Score=81.81 Aligned_cols=47 Identities=26% Similarity=0.518 Sum_probs=33.7
Q ss_pred cCCcceEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEEE
Q psy10924 25 DGTHNVWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVI 93 (322)
Q Consensus 25 ~~~~~~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlv 93 (322)
......||+||..|+.|+|+.++++ . ...+++|+||+ |+ ++++.++.
T Consensus 130 ~~~~~P~vvKP~~g~gs~Gv~~v~~-----------~---~~~~lvEe~I~------G~--e~sv~v~~ 176 (305)
T 3df7_A 130 RPLDCKFIIKPRTACAGEGIGFSDE-----------V---PDGHIAQEFIE------GI--NLSVSLAV 176 (305)
T ss_dssp SCCSSSEEEEESSCC----CBCCSS-----------C---CTTEEEEECCC------SE--EEEEEEEE
T ss_pred ccCCCCEEEEeCCCCCCCCEEEEec-----------C---CCCEEEEeccC------Cc--EEEEEEEe
Confidence 3344569999999999999999987 1 57899999998 65 66776665
No 51
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=98.26 E-value=1.1e-05 Score=78.16 Aligned_cols=58 Identities=16% Similarity=0.332 Sum_probs=43.1
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCC-----CCCCceeEeeccccccccCCceeeEEEEEEEe
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-----LTCPRCVVQKYIEKPLLIHGVKFDLRVWYVIT 94 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~-----~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvt 94 (322)
.+|+||..++.|+|+.++++.+++.+.+..... .....++||+||+. ++ ++++-++..
T Consensus 155 PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g-----~~--e~~v~~~~~ 217 (449)
T 2w70_A 155 PVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLEN-----PR--HVEIQVLAD 217 (449)
T ss_dssp SEEEEETTCCTTTTCEEECSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCSS-----CE--EEEEEEEEC
T ss_pred cEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEeccCC-----Ce--EEEEEEEEc
Confidence 499999999999999999999888776643100 01458999999983 13 567766664
No 52
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=98.24 E-value=1.1e-05 Score=80.87 Aligned_cols=58 Identities=19% Similarity=0.210 Sum_probs=42.8
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCC-CCCCceeEeeccccccccCCceeeEEEEEEEe
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-LTCPRCVVQKYIEKPLLIHGVKFDLRVWYVIT 94 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~-~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvt 94 (322)
.+|+||..++.|+|+.++++.+++...+..... .....++||+||+. |+ ++.+-++..
T Consensus 236 PvVvKp~~g~gg~Gv~~v~~~~el~~a~~~~~~~~~~~~vlvEe~i~g-----~~--e~sv~vl~d 294 (554)
T 1w96_A 236 PVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIPGSPIFIMKLAGR-----AR--HLEVQLLAD 294 (554)
T ss_dssp SEEEEETTCCTTTTEEEECSHHHHHHHHHHHHHHSTTCCEEEEECCCS-----CE--EEEEEEEEC
T ss_pred CEEEEECCCCCCceEEEECCHHHHHHHHHHHHhhccCCCEEEEEecCC-----Cc--EEEEEEEEc
Confidence 399999999999999999999988876653110 01468999999984 34 555555553
No 53
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=98.22 E-value=2.3e-05 Score=76.25 Aligned_cols=58 Identities=24% Similarity=0.334 Sum_probs=42.9
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCC-----CCCCCceeEeeccccccccCCceeeEEEEEEEe
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLK-----NLTCPRCVVQKYIEKPLLIHGVKFDLRVWYVIT 94 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~-----~~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvt 94 (322)
.+|+||..++.|+|+.++++.+++.+.+.... ......++||+||+. ++ ++++-++..
T Consensus 159 PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g-----~~--e~~v~v~~~ 221 (461)
T 2dzd_A 159 PIIIKAALGGGGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIEN-----PK--HIEVQILGD 221 (461)
T ss_dssp CEEEEESTTCSSSSEEEECCGGGHHHHHHHHHHHHHHHTSCCCEEEEECCCS-----CE--EEEEEEEEC
T ss_pred cEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEECCCC-----Ce--EEEEEEEEc
Confidence 49999999999999999999998877665310 011467999999983 13 566666653
No 54
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=98.20 E-value=6.5e-06 Score=76.24 Aligned_cols=51 Identities=14% Similarity=0.281 Sum_probs=21.9
Q ss_pred ceEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEE
Q psy10924 29 NVWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVW 90 (322)
Q Consensus 29 ~~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~y 90 (322)
-.+|+||..++.|+|+.++++.+++.+.+.. ...+++|+||+ |+-+.+.++
T Consensus 150 ~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~-----~~~~lvee~i~------G~e~~v~~~ 200 (331)
T 2pn1_A 150 LPVFVKPRNGSASIEVRRVETVEEVEQLFSK-----NTDLIVQELLV------GQELGVDAY 200 (331)
T ss_dssp SCEEEEESBC----------------------------CEEEEECCC------SEEEEEEEE
T ss_pred CCEEEEeCCCCCCCCeEEeCCHHHHHHHHHh-----CCCeEEEecCC------CcEEEEEEE
Confidence 4699999999999999999999888877653 35899999998 765554433
No 55
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=98.19 E-value=4.1e-06 Score=86.75 Aligned_cols=56 Identities=25% Similarity=0.452 Sum_probs=43.7
Q ss_pred cceEEEeCCCCCCCCCeEEe----CChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEEEE
Q psy10924 28 HNVWVLKPVANCSGHGIRIY----RQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVWYV 92 (322)
Q Consensus 28 ~~~WIvKP~~~s~G~GI~~~----~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yvl 92 (322)
+-..|+||..|+.|+||.++ .+.+++.+.+...... ...++||+||+ |+ |+|+.|+
T Consensus 525 g~PvVVKP~~g~~G~GV~iv~~~v~~~eel~~al~~a~~~-~~~vlVEefI~------G~--Ei~v~Vl 584 (757)
T 3ln7_A 525 NRAVVIKPKSTNYGLGITIFQQGVQNREDFAKALEIAFRE-DKEVMVEDYLV------GT--EYRFFVL 584 (757)
T ss_dssp SSCEEEEESSCSTTTTCEECSSCCCCHHHHHHHHHHHHHH-CSSEEEEECCC------SE--EEEEEEE
T ss_pred CCCEEEEeCCCCCCCCeEEecCCCCCHHHHHHHHHHHHhc-CCcEEEEEcCC------Cc--EEEEEEE
Confidence 34699999999999999999 7888887766431111 46799999996 64 9999887
No 56
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=98.18 E-value=3.5e-06 Score=77.77 Aligned_cols=59 Identities=14% Similarity=0.102 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhccccccccCCCceeEEeeeEEeecCCceEEEEecCCCCCCCCChhHHHHHHHHHHHHhh
Q psy10924 176 AMEESIVTIMRCAQSINYIDLRKNSFQLFGADFLIHENYQPCLIEVNNGPGLSPTTSIIAKKTTELLTDMVK 247 (322)
Q Consensus 176 ~i~~~i~~~l~a~~~~~~~~~~~~~Fel~G~DfllD~~~kpwLIEVN~~P~l~~~~~~~~~l~~~li~d~l~ 247 (322)
+.+++...+.++... .+.|+|++.++ ++++++|||.-|-...+... .+-+..+|.+++-
T Consensus 253 eek~iA~kaa~a~G~-----------~v~GVDlLrs~-~~~~V~EVNg~~fvk~~~~y-yd~~a~il~~~~~ 311 (330)
T 3t7a_A 253 REKLIAWKVCLAFKQ-----------TVCGFDLLRAN-GQSYVCDVNGFSFVKNSMKY-YDDCAKILGNIVM 311 (330)
T ss_dssp HHHHHHHHHHHHTTB-----------SEEEEEEEEET-TEEEEEEEEESCCCSSCHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-----------ceEEEEEEEEC-CccEEEEeCCCccccCchhH-HHHHHHHHHHHHH
Confidence 345666666666554 78899999985 67899999999999876333 3334455555543
No 57
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=98.16 E-value=1.7e-05 Score=77.88 Aligned_cols=48 Identities=13% Similarity=0.257 Sum_probs=37.3
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCC----C-------CCCCceeEeeccccc
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLK----N-------LTCPRCVVQKYIEKP 77 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~----~-------~~~~~~IvQkYI~~P 77 (322)
..|+||..++.|+|+.++++.+++.+.+.... . .....++||+||+.+
T Consensus 176 PvVVKP~~g~gg~Gv~iv~~~eel~~a~~~~~~~~~~~~~~~a~~~~~~vlVEe~I~G~ 234 (474)
T 3vmm_A 176 PLILKPTYLASSIGVTLITDTETAEDEFNRVNDYLKSINVPKAVTFEAPFIAEEFLQGE 234 (474)
T ss_dssp SEEEEESSCCTTTTCEEECCTTSHHHHHHHHHHHHTTSCCCTTCCCSCSEEEEECCCBC
T ss_pred CEEEEECCCCcCceEEEECCHHHHHHHHHHHHHHHhhccccccccCCCeEEEEeCCCCc
Confidence 48999999999999999999988877664310 0 014689999999844
No 58
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=97.96 E-value=0.0001 Score=79.22 Aligned_cols=46 Identities=13% Similarity=0.265 Sum_probs=28.0
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCC-CCCceeEeeccc
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNL-TCPRCVVQKYIE 75 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~-~~~~~IvQkYI~ 75 (322)
.+|+||..++.|+|+.++.+.+++.+.+...... ....++||+||+
T Consensus 711 PvvVKP~~~~gG~Gv~iv~~~~el~~~~~~a~~~~~~~~vlvEefI~ 757 (1073)
T 1a9x_A 711 PLVVRASYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLD 757 (1073)
T ss_dssp SEEEEC-------CEEEECSHHHHHHHHHHCC--------EEEBCCT
T ss_pred CEEEEECCCCCCCCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEccC
Confidence 4899999999999999999999999888653211 146799999998
No 59
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=97.95 E-value=6.8e-06 Score=84.25 Aligned_cols=158 Identities=20% Similarity=0.270 Sum_probs=83.9
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCC-----CCCCceeEeeccccccccCCceeeEEEEEEEeeecCcEEEEe
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-----LTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIWVY 104 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~-----~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvts~~pl~vy~y 104 (322)
..|+||..|+.|+|+.++++.+++.+.+..... .....+++|+||+.| + ++.+-++..... -.+++
T Consensus 180 PvvvKp~~G~Gg~Gv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEeyI~g~-----r--eiev~v~~d~~G-~vv~l- 250 (675)
T 3u9t_A 180 PVLLKAAAGGGGKGMKVVEREAELAEALSSAQREAKAAFGDARMLVEKYLLKP-----R--HVEIQVFADRHG-HCLYL- 250 (675)
T ss_dssp SBCCBCCC------CCCBCCTTTHHHHHSCCCC--------CCCBCCBCCSSC-----B--CEEEEEEECSSS-CEEEE-
T ss_pred cEEEEECCCCCCccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEeecCCC-----c--EEEEEEEEcCCC-CEEEE-
Confidence 479999999999999999999999988864221 113579999999953 3 555656554321 12222
Q ss_pred cceEEEecCCCCCCCcccccccchhhhhhhhcccCCCCCCCCCCCccchHHHHHHHHHhcCChhhHHHHHHHHHHHHHHH
Q psy10924 105 HEGYVRFCSKPYSNILLDEARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIMKAMEESIVTI 184 (322)
Q Consensus 105 ~~g~vR~s~~~y~~~~~d~~~HLTN~~iqk~~~~~~~~~~~~~~~~ws~~~~~~~L~~~~g~~~~~~~i~~~i~~~i~~~ 184 (322)
+-|-|+.... | |+..+. ......-..+..+|.+.+...
T Consensus 251 ---~~rd~s~qr~--------~------qk~ie~-------------------------~Pa~~l~~~~~~~l~~~a~~~ 288 (675)
T 3u9t_A 251 ---NERDCSIQRR--------H------QKVVEE-------------------------APAPGLGAELRRAMGEAAVRA 288 (675)
T ss_dssp ---EEEECCCBSS--------S------SBCEEE-------------------------ESCSSCCHHHHHHHHHHHHHH
T ss_pred ---eccccceeec--------c------ceEEEE-------------------------CCCCCCCHHHHHHHHHHHHHH
Confidence 1222221100 0 000000 000001122334455555555
Q ss_pred HHHhccccccccCCCceeEEeeeEEeecCCceEEEEecCCCCCCCCChhHHHH-HHHHHHHHhhchh
Q psy10924 185 MRCAQSINYIDLRKNSFQLFGADFLIHENYQPCLIEVNNGPGLSPTTSIIAKK-TTELLTDMVKVVT 250 (322)
Q Consensus 185 l~a~~~~~~~~~~~~~Fel~G~DfllD~~~kpwLIEVN~~P~l~~~~~~~~~l-~~~li~d~l~lv~ 250 (322)
+++.. ....+++||++|+++++|+||||..|+-. .+++... --.+++-.+++..
T Consensus 289 ~~alg----------~~G~~~vEf~~~~dG~~~~iEiNpR~~~~--~~~te~~tGvdl~~~~l~~a~ 343 (675)
T 3u9t_A 289 AQAIG----------YVGAGTVEFLLDERGQFFFMEMNTRLQVE--HPVTEAITGLDLVAWQIRVAR 343 (675)
T ss_dssp HHHTT----------CCSEEEEECCBCTTSCBCBCEEESSCCTT--HHHHHHTTTCCHHHHHHHHHT
T ss_pred HHHcC----------CccceEEEEEEcCCCCEEEEeccccccCC--chhhhhhcCCCHHHHHHHHHC
Confidence 54432 23678999999999999999999999764 2333321 1234444455444
No 60
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=97.94 E-value=6.9e-06 Score=84.26 Aligned_cols=159 Identities=18% Similarity=0.248 Sum_probs=55.7
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCC-----CCCCceeEeeccccccccCCceeeEEEEEEEeeecCcEEEEe
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-----LTCPRCVVQKYIEKPLLIHGVKFDLRVWYVITNIDKFKIWVY 104 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~-----~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvts~~pl~vy~y 104 (322)
..|+||..|+.|+|+.++++.+++.+.+..... .....++||+||+.| -++.+-++.........+.
T Consensus 154 PvVvKp~~ggggkGv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEe~I~g~-------rei~V~v~~d~~G~vv~l~- 225 (681)
T 3n6r_A 154 PVMIKASAGGGGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQP-------RHIEIQVLCDSHGNGIYLG- 225 (681)
T ss_dssp -------------------------------------------------CCSC-------EEEEEEEECCSSSCCEEEE-
T ss_pred cEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhCCCCcEEEEeccCCC-------cEEEEEEEEeCCCCEEEEe-
Confidence 489999999999999999999988877654211 113579999999953 3666666654322222211
Q ss_pred cceEEEecCCCCCCCcccccccchhhhhhhhcccCCCCCCCCCCCccchHHHHHHHHHhcCChhhHHHHHHHHHHHHHHH
Q psy10924 105 HEGYVRFCSKPYSNILLDEARHLTNVRIQKQYRNVRDPPQLPAELMWDFKQLRDYFTKNMNLPRKWDMIMKAMEESIVTI 184 (322)
Q Consensus 105 ~~g~vR~s~~~y~~~~~d~~~HLTN~~iqk~~~~~~~~~~~~~~~~ws~~~~~~~L~~~~g~~~~~~~i~~~i~~~i~~~ 184 (322)
.|-|+. |..+.... .. ......-..+..+|.+.+...
T Consensus 226 ----~rd~s~------------------qr~~~k~~------e~---------------~Pa~~l~~~~~~~l~~~a~~~ 262 (681)
T 3n6r_A 226 ----ERECSI------------------QRRNQKVV------EE---------------APSPFLDEATRRAMGEQAVAL 262 (681)
T ss_dssp ----EEECCC------------------EETTEECE------EE---------------ESCSSCCHHHHHHHHHHHHHH
T ss_pred ----eeecce------------------eccCccEE------Ee---------------cCCCCCCHHHHHHHHHHHHHH
Confidence 122211 00000000 00 000000122334455555554
Q ss_pred HHHhccccccccCCCceeEEeeeEEeecCCceEEEEecCCCCCCCCChhHHHH-HHHHHHHHhhchhc
Q psy10924 185 MRCAQSINYIDLRKNSFQLFGADFLIHENYQPCLIEVNNGPGLSPTTSIIAKK-TTELLTDMVKVVTA 251 (322)
Q Consensus 185 l~a~~~~~~~~~~~~~Fel~G~DfllD~~~kpwLIEVN~~P~l~~~~~~~~~l-~~~li~d~l~lv~d 251 (322)
+++.. .-...++||++|+++++|+||||..|+-+ .+++... --.+++-.++++..
T Consensus 263 ~~alg----------~~G~~~vEf~~d~dg~~~~lEiNpR~~~~--~~~te~~tGvdl~~~~l~~a~G 318 (681)
T 3n6r_A 263 AKAVG----------YASAGTVEFIVDGQKNFYFLEMNTRLQVE--HPVTELITGVDLVEQMIRVAAG 318 (681)
T ss_dssp HHTTT----------CCSEEEEEEEECTTSCCCCCEEECSCCTT--HHHHHHHHTCCHHHHHHHHHTS
T ss_pred HHHcC----------CCceEEEEEEEeCCCCEEEEecccccCCC--cHHhHHHhCCCHHHHHHHHHCC
Confidence 44332 22567899999999999999999999765 3444322 23455555555543
No 61
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=97.92 E-value=0.00013 Score=69.15 Aligned_cols=39 Identities=21% Similarity=0.318 Sum_probs=32.0
Q ss_pred eEEEeCCCC-CCCCCeEEeCC--hhHHHHHHhhCCCCCCCceeEeeccc
Q psy10924 30 VWVLKPVAN-CSGHGIRIYRQ--LEDIKRAIGTLKNLTCPRCVVQKYIE 75 (322)
Q Consensus 30 ~WIvKP~~~-s~G~GI~~~~~--~~~i~~~~~~~~~~~~~~~IvQkYI~ 75 (322)
..|+||..+ +.|+|+.++++ .+++.+... . .+|||+||+
T Consensus 116 P~VvKp~~~G~~GkGv~~v~~~~~~el~~a~~------~-~vivEe~I~ 157 (355)
T 3eth_A 116 LAIVKRRTGGYDGRGQWRLRANETEQLPAECY------G-ECIVEQGIN 157 (355)
T ss_dssp EEEEEESSSCCTTTTEEEEETTCGGGSCGGGT------T-TEEEEECCC
T ss_pred CEEEEecCCCCCCCeEEEEcCCCHHHHHHHhh------C-CEEEEEccC
Confidence 489999985 99999999999 888765321 2 699999998
No 62
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=97.87 E-value=0.00022 Score=76.76 Aligned_cols=58 Identities=10% Similarity=0.075 Sum_probs=42.8
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCC-CCCCceeEeeccccccccCCceeeEEEEEEEe
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-LTCPRCVVQKYIEKPLLIHGVKFDLRVWYVIT 94 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~-~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvt 94 (322)
.+|+||..+..|+|+.++++.+++.+.+..... .....++||+||+-+ + ++.+-++..
T Consensus 165 PvVvKp~~~~Gg~Gv~iv~~~eel~~~~~~~~~~~~~~~vlvEe~I~G~-----~--E~~v~v~~d 223 (1073)
T 1a9x_A 165 PCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGW-----K--EYEMEVVRD 223 (1073)
T ss_dssp SEEEEETTCCTTTTCEEESSHHHHHHHHHHHHHHCTTSCEEEEECCTTS-----E--EEEEEEEEC
T ss_pred CEEEEECCCCCCCceEEeCCHHHHHHHHHHHHhhCCCCcEEEEEccCCC-----e--EEEEEEEEe
Confidence 489999999999999999999998877653110 014589999999831 3 566666653
No 63
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=97.82 E-value=9.1e-05 Score=80.06 Aligned_cols=58 Identities=21% Similarity=0.396 Sum_probs=35.6
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCC-----CCCceeEeeccccccccCCceeeEEEEEEEe
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNL-----TCPRCVVQKYIEKPLLIHGVKFDLRVWYVIT 94 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~-----~~~~~IvQkYI~~PlLi~grKFDiR~yvlvt 94 (322)
.+|+||..|+.|+|+.++++.+++.+.+...... ....++||+||+.| + ++.+-++..
T Consensus 157 PvVVKP~~GgGg~Gv~vv~s~eeL~~a~~~a~~~a~~~fg~~~vlVEeyI~G~-----r--eieV~vl~d 219 (1150)
T 3hbl_A 157 PLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNP-----K--HIEVQVIGD 219 (1150)
T ss_dssp SEEEECCC-------CEECCSSSCTHHHHSSSSSCC------CBEEECCCSSC-----E--EEEEEEEEC
T ss_pred CEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEccCCC-----c--EEEEEEEEe
Confidence 5899999999999999999999888877653211 13579999999853 3 555555554
No 64
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=97.69 E-value=8.8e-05 Score=80.31 Aligned_cols=58 Identities=17% Similarity=0.261 Sum_probs=10.5
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCC-----CCCCceeEeeccccccccCCceeeEEEEEEEe
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-----LTCPRCVVQKYIEKPLLIHGVKFDLRVWYVIT 94 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~-----~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvt 94 (322)
.+|+||..++.|+|+.++++.+++.+.+..... .....++||+||+. |+ ++.+-++..
T Consensus 173 PvVVKp~~g~GG~Gv~iv~s~eEL~~a~~~~~~~a~~~fg~~~vlVEefI~g-----g~--EisV~vl~D 235 (1165)
T 2qf7_A 173 PVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVER-----AR--HVESQILGD 235 (1165)
T ss_dssp -----------------------------------------------CCCSS-----EE--EEEEEEEEC
T ss_pred CEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEeccC-----Cc--EEEEEEEEc
Confidence 589999999999999999999888776653211 11357999999984 33 666666654
No 65
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=97.65 E-value=0.00014 Score=68.40 Aligned_cols=40 Identities=28% Similarity=0.484 Sum_probs=29.0
Q ss_pred cceEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccc
Q psy10924 28 HNVWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIE 75 (322)
Q Consensus 28 ~~~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~ 75 (322)
.-.+|+||..++.|+|+.++++.+++... ...+++|+||+
T Consensus 125 g~P~vvKp~~g~g~~gv~~v~~~~~~~~~--------~~~~~~ee~i~ 164 (363)
T 4ffl_A 125 KPPYFVKPPCESSSVGARIIYDDKDLEGL--------EPDTLVEEYVE 164 (363)
T ss_dssp SSCEEEECSSCCTTTTCEEEC------CC--------CTTCEEEECCC
T ss_pred CCCEEEEECCCCCCcCeEEeccHHHhhhh--------ccchhhhhhcc
Confidence 34699999999999999999998776421 56799999997
No 66
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=97.65 E-value=0.00018 Score=68.30 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=33.4
Q ss_pred ceEEEeCCCCCCCCCeEEeCChhHHHHHHhhC---CCC--C-CCceeEeeccc
Q psy10924 29 NVWVLKPVANCSGHGIRIYRQLEDIKRAIGTL---KNL--T-CPRCVVQKYIE 75 (322)
Q Consensus 29 ~~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~---~~~--~-~~~~IvQkYI~ 75 (322)
-..|+||..++.|+|++++++.+++.+.+..- ... . ...+|||+||+
T Consensus 151 ~PvVVK~~~~a~GkGv~v~~s~ee~~~a~~~~~~~~~~~~~~~~~viIEEfl~ 203 (361)
T 2r7k_A 151 GTVIVKFPGARGGRGYFIASSTEEFYKKAEDLKKRGILTDEDIANAHIEEYVV 203 (361)
T ss_dssp SCEEEECSCCCC---EEEESSHHHHHHHHHHHHHTTSCCHHHHHHCEEEECCC
T ss_pred CCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHhccccccCCCCeEEEEeccc
Confidence 46899999999999999999999988765431 100 0 14699999998
No 67
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=97.60 E-value=0.00014 Score=78.95 Aligned_cols=58 Identities=14% Similarity=0.283 Sum_probs=6.4
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCC-----CCCCceeEeeccccccccCCceeeEEEEEEEe
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKN-----LTCPRCVVQKYIEKPLLIHGVKFDLRVWYVIT 94 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~-----~~~~~~IvQkYI~~PlLi~grKFDiR~yvlvt 94 (322)
..|+||..++.|+|+.++++.+++.+.+..-.. .....++||+||+. ++ ++.+-++..
T Consensus 182 PvVVKP~~GgGGkGV~iv~s~eEL~~a~~~~~~~a~~~~~~~~vlVEeyI~G-----~r--EisV~vl~D 244 (1236)
T 3va7_A 182 PVMVKSTAGGGGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVNN-----AR--HVEIQMMGD 244 (1236)
T ss_dssp ---------------------------------------------------C-----CE--EEEEEEEEE
T ss_pred CEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeeccCC-----Ce--EEEEEEEec
Confidence 479999999999999999999988877654211 11457999999993 13 666666654
No 68
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=97.03 E-value=0.00048 Score=64.21 Aligned_cols=42 Identities=17% Similarity=0.323 Sum_probs=20.4
Q ss_pred ceEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccc
Q psy10924 29 NVWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIE 75 (322)
Q Consensus 29 ~~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~ 75 (322)
-.-|+||..++.|+|++++++ +++....... ...+|||+||+
T Consensus 126 ~PviVKp~~g~ggkG~~~v~~-eel~~~~~~~----~~~~IiEEfI~ 167 (320)
T 2pbz_A 126 ELYFVRIEGPRGGSGHFIVEG-SELEERLSTL----EEPYRVERFIP 167 (320)
T ss_dssp CCEEEECC------------C-EECSCCCC--------CCEEEECCC
T ss_pred CcEEEEECCCCCCCCEEEECh-HHHHHHHHhc----CCCEEEEeeec
Confidence 357999999999999999999 8875432211 14799999998
No 69
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=96.85 E-value=0.00095 Score=65.29 Aligned_cols=79 Identities=16% Similarity=0.207 Sum_probs=52.5
Q ss_pred ceEEEeCCCCCCCCCeEEeCCh--hHHHH---HHhhCCCCCCCceeEeecccc---ccccCC----ceeeEEEEEEEeee
Q psy10924 29 NVWVLKPVANCSGHGIRIYRQL--EDIKR---AIGTLKNLTCPRCVVQKYIEK---PLLIHG----VKFDLRVWYVITNI 96 (322)
Q Consensus 29 ~~WIvKP~~~s~G~GI~~~~~~--~~i~~---~~~~~~~~~~~~~IvQkYI~~---PlLi~g----rKFDiR~yvlvts~ 96 (322)
.-|++||+.++.|.|+.+=... ++..+ .+... ...||+|++|+- |...+| |++|+|.|++..
T Consensus 363 ~~lViKp~~g~gg~gv~iG~~~s~~e~~~~~~~i~~~----p~~yIaQe~v~ls~~P~~~~~~~~~r~~dlR~F~~~g-- 436 (474)
T 3n6x_A 363 AELVVKEVQGSGGYGMLVGPAASKQELEDFRQRILAN----PANYIAQPTLALSTCPTLVETGIAPRHVDLRPFVLSG-- 436 (474)
T ss_dssp GGEEEEECCCE-----EEGGGCCHHHHHHHHHHHHHS----GGGEEEEECCCCCEEEEEETTEEEEEEEEEECEEEES--
T ss_pred hheEEEecCCCCCCceEECCcCCHHHHHHHHHHHHhC----CCCEEEeeccCCcccceeeCCceeeeeEEEEEEEEcC--
Confidence 3699999999999999884432 33333 33332 356999999973 333444 799999999973
Q ss_pred cCcEEEEecceEEEecCCC
Q psy10924 97 DKFKIWVYHEGYVRFCSKP 115 (322)
Q Consensus 97 ~pl~vy~y~~g~vR~s~~~ 115 (322)
-..++.-.|+.|++..+
T Consensus 437 --~~~~v~pGgltRva~~~ 453 (474)
T 3n6x_A 437 --KTVSLVPGALCRVALRE 453 (474)
T ss_dssp --SSEEECSCCEEEEECST
T ss_pred --CceEEecceEEEEecCC
Confidence 23678899999999753
No 70
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.41 E-value=0.0045 Score=47.10 Aligned_cols=47 Identities=21% Similarity=0.360 Sum_probs=36.7
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCC-----CCCCCceeEeecccc
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLK-----NLTCPRCVVQKYIEK 76 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~-----~~~~~~~IvQkYI~~ 76 (322)
.+|+||..++.|+|+.++++.+++.+.+..-. ......++||+||+-
T Consensus 47 P~vvKp~~~~~~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvee~i~g 98 (108)
T 2cqy_A 47 PVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDRLLIEKFIDN 98 (108)
T ss_dssp SEEEEETTSCCTTTCEEESSHHHHHHHHHHHHHHHHHHTSSCCEEEEECCSS
T ss_pred CEEEEECCCCCCccEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEeeccCC
Confidence 38999999999999999999988887664210 001367999999984
No 71
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=90.46 E-value=0.11 Score=52.35 Aligned_cols=46 Identities=20% Similarity=0.304 Sum_probs=32.2
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccc
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKP 77 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~P 77 (322)
-||+||..|..|.||.+++...+..+ ..........+|.|+|++.|
T Consensus 529 ~yV~KPi~gReG~nV~i~~~~~~~~~--~~~~~y~~~~~IyQe~~~lp 574 (619)
T 2io8_A 529 GYAVKPIAGRCGSNIDLVSHHEEVLD--KTSGKFAEQKNIYQQLWCLP 574 (619)
T ss_dssp CEEEEETTCCTTTTCEEECTTSCEEE--ECCCTTTTSCEEEEECCCCC
T ss_pred CEEEccCCCCCCCCEEEEeCCChhHh--hccccccCCCeEEEEecCCC
Confidence 49999999999999999986222110 11111225789999999966
No 72
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=89.85 E-value=0.22 Score=50.54 Aligned_cols=58 Identities=12% Similarity=0.059 Sum_probs=21.0
Q ss_pred eEEEeCCCCCCCCCeEEeCChhHHHHHHhhCCCCCCCceeEeeccccccccCCceeeEEEE
Q psy10924 30 VWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLRVW 90 (322)
Q Consensus 30 ~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~y 90 (322)
-||+||..|..|.||.+.+.-.++.... ........+|+|+|++-| .++|.-.-+.+|
T Consensus 544 ~yV~KPi~gReG~nV~I~~~~~~~~~~~--~g~y~~~~~IyQe~~~lp-~f~~~~~~iG~~ 601 (652)
T 2vob_A 544 GYAKKPIVGRVGSNVIITSGDGVVHAES--GGKYGKRNMIYQQLFELK-KQDDYYAIIGGW 601 (652)
T ss_dssp CEEEEECC-----------------------------CEEEEECCC---CBTTBCCEEEEE
T ss_pred CeEeccCCCCCCCCEEEEcCCchhhhhc--ccccCCCCeEEEecccCC-ccCCcceEEEEE
Confidence 4999999999999999987543322111 111225789999999966 445433333333
No 73
>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine synthetase; HET: MSE; 1.90A {Methylobacillus flagellatus KT}
Probab=87.92 E-value=1.8 Score=40.86 Aligned_cols=119 Identities=11% Similarity=0.161 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhcCCcceEEEeCCCCCCCCCeEEeCChhHHHHHHhh--------CCCCCCCceeEeec
Q psy10924 2 QHVFARAKHVVESVEEYNKQEMYDGTHNVWVLKPVANCSGHGIRIYRQLEDIKRAIGT--------LKNLTCPRCVVQKY 73 (322)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~pq~~~~~~~~~WIvKP~~~s~G~GI~~~~~~~~i~~~~~~--------~~~~~~~~~IvQkY 73 (322)
+..++...++|..+.+.+-+|.++ +.+--|+|-.+|.-|-||.-+++.+++...-.. +.+..-...|||+.
T Consensus 252 ~~La~~Vd~lL~kIr~KY~eygI~-~~PfV~VKADaGTYGMGImtV~s~~ev~~LNrK~RnKM~~~Keg~~v~~VIIQEG 330 (432)
T 3k1t_A 252 EQLAEKVDSLLAKIRRKYAEYGVK-QEPFVIVKADAGTYGMGIMTVKSADDVRDLNRKQRNKMSVVKEGLKVSEVILQEG 330 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCC-SCCCEEEEEECGGGCEEEEEESSGGGGSSCCHHHHHHHHCSSSSSCCCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC-CCceEEEEcCCCCCCceEEEecCHHHHHHHhHHhhhhhhhccCCCccceEEEecC
Confidence 456788899999999999988885 456679999999999999999999887642211 22222568999999
Q ss_pred cccccccCCceeeEEEEEEEeeecCcEEEEecceEEEecCCCCCCCccc-ccccchh
Q psy10924 74 IEKPLLIHGVKFDLRVWYVITNIDKFKIWVYHEGYVRFCSKPYSNILLD-EARHLTN 129 (322)
Q Consensus 74 I~~PlLi~grKFDiR~yvlvts~~pl~vy~y~~g~vR~s~~~y~~~~~d-~~~HLTN 129 (322)
|..--.++|---.-=+|++= -. --.|+-|+.+..=.-.|++ ..+|..-
T Consensus 331 V~T~E~~~~avAEPVVYmid----~~----vvGgFyRvh~~rg~dENLNapGm~F~p 379 (432)
T 3k1t_A 331 VYTFEHLKDAVAEPVIYMMD----HF----VVGGFYRVHTSRGADENLNAPGMHFEP 379 (432)
T ss_dssp CCCCEEETTEEEEEEEEEET----TE----EEEEEEEEESCCSTTTTTSCCTTCEEE
T ss_pred cchhhhhCCccccceEEEEC----CE----EEEEEEEecCCCCCccCCCCCCCEeee
Confidence 98544566654444344331 11 1367888888876666776 4666543
No 74
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=78.91 E-value=2.5 Score=36.67 Aligned_cols=46 Identities=13% Similarity=0.198 Sum_probs=33.9
Q ss_pred eEEEeCCCC-----CCCCCeEE-eCChhHHHHHHhhC--------CCCCCCceeEeeccc
Q psy10924 30 VWVLKPVAN-----CSGHGIRI-YRQLEDIKRAIGTL--------KNLTCPRCVVQKYIE 75 (322)
Q Consensus 30 ~WIvKP~~~-----s~G~GI~~-~~~~~~i~~~~~~~--------~~~~~~~~IvQkYI~ 75 (322)
..++||..+ +.|.|+.+ +++.+++.+.+..- +......++||+||+
T Consensus 58 PvvvKp~~~~~~~r~~~gGv~~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~vlVEe~i~ 117 (238)
T 1wr2_A 58 PVVLKLMSPQILHKSDAKVVMLNIKNEEELKKKWEEIHENAKKYRPDAEILGVLVAPMLK 117 (238)
T ss_dssp SEEEEEECTTCCCHHHHTCEEEEECSHHHHHHHHHHHHHHHHHHCTTCCCCEEEEEECCC
T ss_pred CEEEEEccCCCCcCCccCCEEEeCCCHHHHHHHHHHHHHhhhhhCCCCccceEEEEECCC
Confidence 479999998 67788988 79988887665431 111136799999998
No 75
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=65.25 E-value=12 Score=35.32 Aligned_cols=45 Identities=18% Similarity=0.307 Sum_probs=32.2
Q ss_pred EEEeCC--CCCCCCC---------eEEeCChhHHHHHHhhCCCC------------CCCceeEeeccc
Q psy10924 31 WVLKPV--ANCSGHG---------IRIYRQLEDIKRAIGTLKNL------------TCPRCVVQKYIE 75 (322)
Q Consensus 31 WIvKP~--~~s~G~G---------I~~~~~~~~i~~~~~~~~~~------------~~~~~IvQkYI~ 75 (322)
+++||. .|.||+| +.+.++.+++.+....-... .....+||+|++
T Consensus 43 vVvK~~i~~GGrGKg~~ks~~~GGV~l~~s~~e~~~a~~~~l~~~~~t~q~g~~g~~~~~vlVEe~v~ 110 (395)
T 2fp4_B 43 IVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALD 110 (395)
T ss_dssp EEEEECCSSSCGGGCEETTSCBCSEEEESCHHHHHHHHHTTTTSEEECTTSCTTCEECCCEEEEECCC
T ss_pred EEEEEeeccCCCccCccccCCcCCEEEECCHHHHHHHHHHHhhcchhhhccCCCCCccceEEEEEccC
Confidence 699994 5667765 99999999998887642111 023688999886
No 76
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=58.96 E-value=17 Score=34.31 Aligned_cols=46 Identities=15% Similarity=0.311 Sum_probs=32.7
Q ss_pred eEEEeCCCCCCCC----CeEEeCChhHHHHHHhhCCC-----CCCCceeEeeccc
Q psy10924 30 VWVLKPVANCSGH----GIRIYRQLEDIKRAIGTLKN-----LTCPRCVVQKYIE 75 (322)
Q Consensus 30 ~WIvKP~~~s~G~----GI~~~~~~~~i~~~~~~~~~-----~~~~~~IvQkYI~ 75 (322)
.+++||.....|+ |+.+.++.+++.+....-.. ......+||+|++
T Consensus 41 PvVvKa~~~~ggkg~~GGV~l~~s~ee~~~a~~~~~~~~~~g~~~~~vlVEe~v~ 95 (397)
T 3ufx_B 41 RVVIKAQVHVGGRGKAGGVKLADTPQEAYEKAQAILGMNIKGLTVKKVLVAEAVD 95 (397)
T ss_dssp CEEEEECCSSSCTTTTTCEEEESSHHHHHHHHHHHTTCEETTEECCCEEEEECCC
T ss_pred CEEEEEccccCCCCccceEEEeCCHHHHHHHHHHhhhhhccCCccceEEEEEeec
Confidence 4999998844444 99999999998877764211 0135688888886
No 77
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=48.20 E-value=12 Score=36.31 Aligned_cols=28 Identities=18% Similarity=0.167 Sum_probs=24.5
Q ss_pred ceeEEeeeEEeecCCceEEEEecC-CCCC
Q psy10924 200 SFQLFGADFLIHENYQPCLIEVNN-GPGL 227 (322)
Q Consensus 200 ~Fel~G~DfllD~~~kpwLIEVN~-~P~l 227 (322)
...+.|+|+..|.+|+-|+||-|. .||-
T Consensus 141 ~~~i~~~Dl~r~~dG~~~vlEdn~~~PSG 169 (474)
T 3n6x_A 141 YAHIAGVDLVRTGENDFYVLEDNLRTPSG 169 (474)
T ss_dssp SCSEEEEEEEECSSSCEEEEEEECSSCCC
T ss_pred EEEEEEEEEEECCCCCEEEEEeCCCCCch
Confidence 356899999999999999999997 5774
No 78
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=46.24 E-value=29 Score=32.53 Aligned_cols=45 Identities=20% Similarity=0.395 Sum_probs=31.9
Q ss_pred EEEeCCCCCCCC----CeEEeCChhHHHHHHhhCCC------------CCCCceeEeeccc
Q psy10924 31 WVLKPVANCSGH----GIRIYRQLEDIKRAIGTLKN------------LTCPRCVVQKYIE 75 (322)
Q Consensus 31 WIvKP~~~s~G~----GI~~~~~~~~i~~~~~~~~~------------~~~~~~IvQkYI~ 75 (322)
.++||.....|| |+.+.++.+++.+....-.. .....++||+|++
T Consensus 43 vVvK~~~~~ggrg~~gGV~l~~s~eel~~a~~~~~~~~~~t~q~g~~g~~~~~vlVEe~v~ 103 (388)
T 2nu8_B 43 WVVKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATD 103 (388)
T ss_dssp EEEEECCSSSCTTTTTCEEEECSHHHHHHHHHHHTTSEECCTTSCTTCEECCCEEEEECCC
T ss_pred EEEEEecCCCCCCccCCEEEECCHHHHHHHHHHHhhhhhhccccCCCCcccceEEEEEccc
Confidence 699998863333 99999999998877654211 0124689999987
No 79
>4e9m_A Nucleotide-binding oligomerization domain-contain protein 1; innate immunity, RIPK2, protein binding; HET: FLC; 2.15A {Homo sapiens} PDB: 2b1w_A 2dbd_A
Probab=32.90 E-value=2.3 Score=34.35 Aligned_cols=17 Identities=29% Similarity=0.618 Sum_probs=11.4
Q ss_pred CCceEEEEecCCCCCCC
Q psy10924 213 NYQPCLIEVNNGPGLSP 229 (322)
Q Consensus 213 ~~kpwLIEVN~~P~l~~ 229 (322)
+++|||-||+.+|+-..
T Consensus 105 dl~pwl~ei~~~p~~~~ 121 (144)
T 4e9m_A 105 DLRPWLLEIGFSPSLLT 121 (144)
T ss_dssp GGHHHHHHTTCC-----
T ss_pred chhHHHHHhCCCcHHHh
Confidence 68999999999998764
No 80
>3kal_A Homoglutathione synthetase; dimer, ATP-grAsp domain; HET: ADP HGS; 1.90A {Glycine max} PDB: 3kak_A* 3kaj_A*
Probab=29.65 E-value=1.1e+02 Score=29.65 Aligned_cols=45 Identities=20% Similarity=0.374 Sum_probs=32.5
Q ss_pred CceeEEeeeEEeecCCceEE-EEecC-CCCCCCCChhHHHHHHHHHH
Q psy10924 199 NSFQLFGADFLIHENYQPCL-IEVNN-GPGLSPTTSIIAKKTTELLT 243 (322)
Q Consensus 199 ~~Fel~G~DfllD~~~kpwL-IEVN~-~P~l~~~~~~~~~l~~~li~ 243 (322)
-...++.=|+|+|.+...+. +|+|+ +=+|..-+.....++.-++.
T Consensus 147 l~Lgl~RSDYMld~~~~~lkQVEfNTIsaSFggls~~v~~lHr~l~~ 193 (499)
T 3kal_A 147 IRMGIVRSDYMIDEKTKSLLQIEMNTISTSFALIGCLMTGLHKSLLS 193 (499)
T ss_dssp EEEEEEEEEEEEETTTTEEEEEEEECSSCCCHHHHHHHHHHHHHHHH
T ss_pred eeeeeeehhhhcCCCCCceEEEEeechhhhcchHHHHHHHHHHHHHH
Confidence 45799999999997766554 99997 55666555556666666654
No 81
>3le4_A Microprocessor complex subunit DGCR8; WW motif, dimerization, 3D domain swapping, heme binding, MI processing, heme, iron, metal-binding, nucleus; 1.70A {Homo sapiens}
Probab=26.22 E-value=87 Score=22.22 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=27.3
Q ss_pred EEEEeeecCcEEEEecceEEEecCCCCCCC
Q psy10924 90 WYVITNIDKFKIWVYHEGYVRFCSKPYSNI 119 (322)
Q Consensus 90 yvlvts~~pl~vy~y~~g~vR~s~~~y~~~ 119 (322)
|++++....+-+|+|+.--+..-+.+|.+.
T Consensus 33 W~~v~H~SGmP~YlH~~trV~T~SrPY~lG 62 (79)
T 3le4_A 33 WIMTFHNSGVPVYLHRESRVVTWSRPYFLG 62 (79)
T ss_dssp EEEEECTTSSEEEEETTTTEEESSCCCCCT
T ss_pred cEEEEecCCceEEEeccceEEeccCCeEec
Confidence 899998889999999999898889999885
Done!