RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy10924
         (322 letters)



>gnl|CDD|217380 pfam03133, TTL, Tubulin-tyrosine ligase family.  Tubulins and
           microtubules are subjected to several post-translational
           modifications of which the reversible
           detyrosination/tyrosination of the carboxy-terminal end
           of most alpha-tubulins has been extensively analysed.
           This modification cycle involves a specific
           carboxypeptidase and the activity of the
           tubulin-tyrosine ligase (TTL). The true physiological
           function of TTL has so far not been established.
           Tubulin-tyrosine ligase (TTL) catalyzes the
           ATP-dependent post-translational addition of a tyrosine
           to the carboxy terminal end of detyrosinated
           alpha-tubulin. In normally cycling cells, the
           tyrosinated form of tubulin predominates. However, in
           breast cancer cells, the detyrosinated form frequently
           predominates, with a correlation to tumour
           aggressiveness. On the other hand, 3-nitrotyrosine has
           been shown to be incorporated, by TTL, into the carboxy
           terminal end of detyrosinated alpha-tubulin. This
           reaction is not reversible by the carboxypeptidase
           enzyme. Cells cultured in 3-nitrotyrosine rich medium
           showed evidence of altered microtubule structure and
           function, including altered cell morphology, epithelial
           barrier dysfunction, and apoptosis. Bacterial homologs
           of TTL are predicted to form peptide tags. Some of these
           are fused to a 2-oxoglutarate Fe(II)-dependent
           dioxygenase domain.
          Length = 291

 Score =  177 bits (452), Expect = 6e-54
 Identities = 77/226 (34%), Positives = 118/226 (52%), Gaps = 13/226 (5%)

Query: 29  NVWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKPLLIHGVKFDLR 88
           N W++KP A+  G GIRI   L  I + I +         VVQKYIE+PLLI G KFD+R
Sbjct: 67  NTWIVKPSASARGRGIRITNDLSQILKQIQS------RPLVVQKYIERPLLIDGRKFDIR 120

Query: 89  VWYVITNIDKFKIWVYHEGYVRFCSKPYSNI---LLDEARHLTNVRIQKQYRNVRDPPQL 145
           ++ ++T+++  +++VY EG +RF S  YS     L D   HLTN  IQK+  ++ +    
Sbjct: 121 LYVLVTSVNPLRVYVYREGLLRFASVKYSPSVSDLDDVEMHLTNYSIQKKSSSLNEDYNE 180

Query: 146 PAELMWDFKQLRDYFTKNMNLPRKWDMIMKAMEESIVTIMRCAQ-SINYIDLRKNSFQLF 204
           P    W       Y  +  +    W  I   + ++I+      + S   +    N F+L+
Sbjct: 181 PNGHKWSLFNFWKY-LEEKDKEEIWLEIESIIIKTIL--AAEVEASRLNVQPLYNCFELY 237

Query: 205 GADFLIHENYQPCLIEVNNGPGLSPTTSIIAKKTTELLTDMVKVVT 250
           G DF+I EN +P L+EVN  P L  TT + A+   +L+ D++  V 
Sbjct: 238 GFDFMIDENLKPWLLEVNASPSLHSTTKLDARLKEQLIDDVLNSVV 283


>gnl|CDD|223516 COG0439, AccC, Biotin carboxylase [Lipid metabolism].
          Length = 449

 Score = 33.0 bits (76), Expect = 0.18
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 32  VLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLT-----CPRCVVQKYIEKPLLIH 81
           ++K  A   G G+R+ R  E+++ A    +         PR  ++K+IE P  I 
Sbjct: 156 IVKAAAGGGGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGPRHIE 210


>gnl|CDD|180150 PRK05586, PRK05586, biotin carboxylase; Validated.
          Length = 447

 Score = 30.1 bits (68), Expect = 1.5
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 32  VLKPVANCSGHGIRIYRQLEDIKRAIGTLK-----NLTCPRCVVQKYIEKP 77
           ++K  A   G GIRI R  E++ +A  T K             ++K+IE P
Sbjct: 156 MVKASAGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENP 206


>gnl|CDD|181534 PRK08671, PRK08671, methionine aminopeptidase; Provisional.
          Length = 291

 Score = 29.4 bits (67), Expect = 2.2
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query: 33  LKPVANCSGHGIRIYRQ 49
            KP+ N +GHG+  Y  
Sbjct: 143 FKPIRNLTGHGLERYEL 159


>gnl|CDD|223267 COG0189, RimK, Glutathione synthase/Ribosomal protein S6
           modification enzyme (glutaminyl transferase) [Coenzyme
           metabolism / Translation, ribosomal structure and
           biogenesis].
          Length = 318

 Score = 29.6 bits (67), Expect = 2.3
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 32  VLKPVANCSGHGI-RIYRQLEDIKRAIGTLKNLTCPRCVVQKYIEKP 77
           VLKP+    G G+  +     ++   + TL        +VQ+YI K 
Sbjct: 159 VLKPLDGSGGRGVFLVEDADPELLSLLETLTQEGRKLIIVQEYIPKA 205


>gnl|CDD|222206 pfam13535, ATP-grasp_4, ATP-grasp domain.  This family includes a
          diverse set of enzymes that possess ATP-dependent
          carboxylate-amine ligase activity.
          Length = 183

 Score = 27.6 bits (62), Expect = 6.4
 Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 31 WVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLT--CPRCVVQKYIEKPL 78
           VLKP       G+       +++ A+  L          +V++YI+   
Sbjct: 42 VVLKPRDGAGSLGVFRVDSAAELEAALAALAAEVEDTREYLVEEYIDGDE 91


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.322    0.135    0.416 

Gapped
Lambda     K      H
   0.267   0.0747    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,283,762
Number of extensions: 1538990
Number of successful extensions: 1194
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1191
Number of HSP's successfully gapped: 14
Length of query: 322
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 225
Effective length of database: 6,635,264
Effective search space: 1492934400
Effective search space used: 1492934400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)