RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10924
(322 letters)
>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA,
C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]}
Length = 228
Score = 35.4 bits (80), Expect = 0.005
Identities = 23/141 (16%), Positives = 39/141 (27%), Gaps = 2/141 (1%)
Query: 90 WYVITNIDKFKIWVYHEGYVRFCSKPYSNILLDEARHLTNVRIQKQYRNVRDPPQLPAEL 149
+ + + ++ K ++ AR L I V +
Sbjct: 54 VGISRVTNAEEYTEALSDSFQYDYKVLIEEAVNGARELEVGVIGNDQPLVSEIGAHTVPN 113
Query: 150 MWDFKQLRDYFTKNMNLPRKWDMIMKAMEESIVTIMRCAQSINYIDLRKNSFQLFGADFL 209
DY K ++ I + + ++ Y L DFL
Sbjct: 114 QGSGDGWYDYNNKFVDNSAVHFQIPAQLSPEVTKEVKQMALDAYKVLNLRG--EARMDFL 171
Query: 210 IHENYQPCLIEVNNGPGLSPT 230
+ EN P L E N PG +
Sbjct: 172 LDENNVPYLGEPNTLPGFTNM 192
>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide
ribonucleotide synthetase PurP {Methanocaldococcus
jannaschii [TaxId: 2190]}
Length = 238
Score = 35.1 bits (80), Expect = 0.006
Identities = 25/213 (11%), Positives = 51/213 (23%), Gaps = 46/213 (21%)
Query: 32 VLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLT------CPRCVVQKYIEKPLLIHGVKF 85
++K G G I E+ + LK +++Y+ +
Sbjct: 31 IVKFPGARGGRGYFIASSTEEFYKKAEDLKKRGILTDEDIANAHIEEYVVGTNFCIHYFY 90
Query: 86 DLRVWYVITNIDKFKIWVYHEGYVRFCSKPYSNILLDEARHLTNVRIQKQYRNVRDPPQL 145
V + +G VR +K + I Y + P
Sbjct: 91 SPLKDEVELLGMDKRYESNIDGLVRIPAK-----------DQLEMNINPSYVITGNIPV- 138
Query: 146 PAELMWDFKQLRDYFTKNMNLPRKWDMIMKAMEESIVTIMRCAQSINYIDLRKNSFQLFG 205
+ + M + +V + I F
Sbjct: 139 -------------------VIRESLLPQVFEMGDKLVAKAKELVPPGMI-------GPFC 172
Query: 206 ADFLIHENYQPCLIEVNNGPGLSPTTSIIAKKT 238
L +EN + + E++ + T+
Sbjct: 173 LQSLCNENLELVVFEMS--ARVDGGTNSFMNGG 203
>d1agre_ a.91.1.1 (E:) Regulator of G-protein signaling 4, RGS4 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 128
Score = 30.3 bits (68), Expect = 0.14
Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 134 KQYRNVRDPPQLPAELMWDFKQ-LRDYFTKNMNLPRK-WDMIMKAMEESIVTIMRCAQSI 191
++Y+ ++ P +L + + + + TK +NL + + M E +T AQ
Sbjct: 46 EEYKKIKSPSKLSPKAKKIYNEFISVQATKEVNLDSCTREETSRNMLEPTITCFDEAQKK 105
Query: 192 NYIDLRKNSFQLF 204
+ + K+S++ F
Sbjct: 106 IFNLMEKDSYRRF 118
>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 206
Score = 30.8 bits (68), Expect = 0.17
Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 1/81 (1%)
Query: 11 VVESVEEYNKQEMYDGTHNVWVLKPVANCSGHGIRIYRQLEDIKRAIGTLKNLTCPRCVV 70
++E N +EM V+K SG G + I ++ LT
Sbjct: 33 LIEQTYYPNHREMLTLPTFPVVVKIGHAHSGMGKVKVEN-HYDFQDIASVVALTQTYATA 91
Query: 71 QKYIEKPLLIHGVKFDLRVWY 91
+ +I+ I K
Sbjct: 92 EPFIDAKYDIRVQKIGNNYKA 112
>d2ik8b1 a.91.1.1 (B:65-180) Regulator of G-protein signaling 16,
RGS16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 116
Score = 29.2 bits (65), Expect = 0.22
Identities = 9/73 (12%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Query: 134 KQYRNVRDPPQLP--AELMWDFKQLRDYFTKNMNLPRKWDMIMKAMEESIVTIMRCAQSI 191
++++ +R +L A +++ + + ++ ++ + T AQ
Sbjct: 35 EEFKKIRSATKLASRAHQIFEEFICSEAPKEVNIDHETRELTRMNLQTATATCFDAAQGK 94
Query: 192 NYIDLRKNSFQLF 204
+ K+S+ F
Sbjct: 95 TRTLMEKDSYPRF 107
>d2jm5a1 a.91.1.1 (A:3-134) Regulator of G-protein signaling 18,
RGS18 {Human (Homo sapiens) [TaxId: 9606]}
Length = 132
Score = 29.2 bits (65), Expect = 0.34
Identities = 13/87 (14%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 134 KQYRNVRDPPQLP--AELMWDFKQLRDYFTKNMNLPRKWDMIMKAMEESIVTIMRCAQSI 191
+ ++ + P Q+ A+ +++ D + ++I ++ + + AQS
Sbjct: 46 EDFKKSKGPQQIHLKAKAIYEKFIQTDAPKEVNLDFHTKEVITNSITQPTLHSFDAAQSR 105
Query: 192 NYIDLRKNSFQLFGADFLIHENYQPCL 218
Y + ++S+ FL + Y +
Sbjct: 106 VYQLMEQDSYTR----FLKSDIYLDLM 128
>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain
{Escherichia coli, gene ddlB [TaxId: 562]}
Length = 210
Score = 28.2 bits (61), Expect = 1.0
Identities = 9/104 (8%), Positives = 29/104 (27%), Gaps = 6/104 (5%)
Query: 150 MWDFKQLRDYFTKNMNLPRKWDMIMKAMEESIVTIMRCAQSINYIDLRKNSFQLFGADFL 209
+ ++ + D +
Sbjct: 104 SIRIQPSGTFYDYEAKFLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVM 163
Query: 210 IHENYQPCLIEVNNGPGLSPTTSI--IAKKT----TELLTDMVK 247
+ + Q L+E N PG++ + + A++ ++L+ +++
Sbjct: 164 LDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 207
>d1cmza_ a.91.1.1 (A:) Galpha interacting protein, GaIP {Human (Homo
sapiens) [TaxId: 9606]}
Length = 128
Score = 26.5 bits (58), Expect = 2.6
Identities = 14/87 (16%), Positives = 33/87 (37%), Gaps = 6/87 (6%)
Query: 134 KQYRNVRDPPQLPAELMWDFKQ-LRDYFTKNMNLPRK-WDMIMKAMEESIVTIMRCAQSI 191
++ + + + + ++ + K ++L + + I K M+E AQ
Sbjct: 46 EELKAEANQHVVDEKARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQ 105
Query: 192 NYIDLRKNSFQLFGADFLIHENYQPCL 218
Y + ++S+ FL Y+ L
Sbjct: 106 IYTLMHRDSYPR----FLSSPTYRALL 128
>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA,
C-domain {Enterococcus faecium [TaxId: 1352]}
Length = 211
Score = 25.5 bits (54), Expect = 7.6
Identities = 18/164 (10%), Positives = 41/164 (25%), Gaps = 9/164 (5%)
Query: 90 WYVITNIDKFKIWVYHEGYVRFCSKPYSNILLDEARHLTNVRIQKQYRNVRDPPQLPAEL 149
+ + ++ Y R + + V
Sbjct: 47 SFGVKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQ 106
Query: 150 MWDFKQLRDYFTKNMNLPRKWDMIMKAMEESIVTIMRCAQSINYIDLRKNSFQLFGADFL 209
F+ ++ + + + E I + I + L D
Sbjct: 107 YGIFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETVKKIYKTLGCRG---LARVDMF 163
Query: 210 IHENYQPCLIEVNNGPGLSPTTSI--IAKKT----TELLTDMVK 247
+ +N + L EVN PG + + + EL+ ++
Sbjct: 164 LQDNGRIVLNEVNTLPGFTSYSRYPRMMAAAGISLPELIDRLIV 207
>d1u5ta1 a.4.5.54 (A:20-164) Vacuolar sorting protein SNF8 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 145
Score = 25.1 bits (55), Expect = 8.8
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 39 CSGHGIRIYRQLEDIKRAIGTLKNLTC 65
H ++ L+D++++I LK+L C
Sbjct: 101 EKVHFRKLNVGLDDLEKSIDMLKSLEC 127
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.135 0.416
Gapped
Lambda K H
0.267 0.0505 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,256,484
Number of extensions: 59981
Number of successful extensions: 135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 15
Length of query: 322
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 237
Effective length of database: 1,240,546
Effective search space: 294009402
Effective search space used: 294009402
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.7 bits)