Query psy10925
Match_columns 214
No_of_seqs 120 out of 1109
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 22:00:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10925.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10925hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4exq_A UPD, URO-D, uroporphyri 100.0 4.1E-50 1.4E-54 357.4 17.5 195 10-205 5-207 (368)
2 1r3s_A URO-D, uroporphyrinogen 100.0 3.9E-45 1.3E-49 324.8 18.4 197 9-205 9-207 (367)
3 1j93_A UROD, uroporphyrinogen 100.0 3.2E-44 1.1E-48 317.1 17.4 199 4-205 2-203 (353)
4 3cyv_A URO-D, UPD, uroporphyri 100.0 5.5E-44 1.9E-48 315.6 17.5 193 12-205 2-197 (354)
5 2inf_A URO-D, UPD, uroporphyri 100.0 8.9E-43 3E-47 308.7 17.4 193 9-205 9-203 (359)
6 2eja_A URO-D, UPD, uroporphyri 100.0 4.3E-42 1.5E-46 301.8 17.4 186 11-205 1-189 (338)
7 4ay7_A Methylcobalamin\: coenz 100.0 2.3E-41 7.9E-46 298.5 13.8 183 10-205 12-200 (348)
8 1ypx_A Putative vitamin-B12 in 88.2 0.57 1.9E-05 41.0 5.1 136 51-204 33-176 (375)
9 2nq5_A 5-methyltetrahydroptero 82.7 1.7 5.9E-05 41.5 5.9 59 130-205 522-580 (755)
10 1u1j_A 5-methyltetrahydroptero 73.1 2.1 7.3E-05 40.9 3.3 59 130-205 537-595 (765)
11 2nq5_A 5-methyltetrahydroptero 63.4 5.9 0.0002 37.8 4.1 31 51-81 32-62 (755)
12 1f76_A Dihydroorotate dehydrog 50.4 23 0.0008 29.7 5.4 60 129-191 272-334 (336)
13 3zwt_A Dihydroorotate dehydrog 47.5 40 0.0014 29.0 6.5 66 129-197 281-349 (367)
14 3oix_A Putative dihydroorotate 46.6 35 0.0012 29.2 5.9 66 129-197 258-326 (345)
15 1u1j_A 5-methyltetrahydroptero 44.6 6 0.00021 37.8 0.8 31 51-81 29-59 (765)
16 1jub_A Dihydroorotate dehydrog 43.5 41 0.0014 27.7 5.8 65 129-196 225-292 (311)
17 2l3l_A Tubulin-specific chaper 37.9 19 0.00065 25.8 2.4 31 183-213 57-87 (111)
18 1tv5_A Dhodehase, dihydroorota 36.1 45 0.0015 29.6 5.1 64 129-195 356-422 (443)
19 2e6f_A Dihydroorotate dehydrog 34.3 74 0.0025 26.1 6.0 64 129-196 228-294 (314)
20 1t7l_A 5-methyltetrahydroptero 31.7 52 0.0018 31.4 5.0 104 51-164 462-573 (766)
21 3i65_A Dihydroorotate dehydrog 28.2 71 0.0024 28.1 4.9 65 129-196 328-395 (415)
22 1x40_A ARAP2; ASAP-related pro 24.2 61 0.0021 21.9 3.0 36 112-150 49-84 (91)
23 2l9b_A MRNA 3'-END-processing 23.6 1.1E+02 0.0036 21.9 4.2 27 177-203 63-89 (109)
24 3rpd_A Methionine synthase (B1 23.1 49 0.0017 28.4 2.9 100 51-164 44-155 (357)
25 4hnl_A Mandelate racemase/muco 20.5 1.6E+02 0.0055 25.4 5.8 38 127-164 202-239 (421)
No 1
>4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme biosynthesis, structural GENO niaid; 1.65A {Burkholderia thailandensis}
Probab=100.00 E-value=4.1e-50 Score=357.41 Aligned_cols=195 Identities=41% Similarity=0.764 Sum_probs=184.8
Q ss_pred CCCCCccCccc--cCCcccCccchhhhhhhcccchHHHHHHcCC-ChhhhcCCHHHHHHHHHhHHHhcCCCeeeeCCCcc
Q psy10925 10 TFPPLKNDRLL--PRGEEVDKIPIWIMRQAGRYLPEFRELRSKH-DFFTICQTPELAAEITLQPIRRFNLDASIIFSDIL 86 (214)
Q Consensus 10 ~~t~~~~ER~~--l~Ge~~DriPv~~~~~~g~~~p~~~a~~~g~-~~~e~~~d~e~~ae~~~~~~~~~g~D~v~i~~d~~ 86 (214)
.|+|+||||++ ++||++||+|||+|+|||||+|+|++.+.++ ++.|+|.|||++||++++++++||+|++++++|++
T Consensus 5 ~~~~~~~~r~l~al~ge~~dr~Pvw~mrqaGr~lpey~~~r~~~~~f~~~~~~pe~~ae~tl~~~~~~~~Da~i~fsDi~ 84 (368)
T 4exq_A 5 MAQTLINDTFLRALLREPTDYTPIWLMRQAGRYLPEYNATRARAGSFLGLAKHPDYATEVTLQPLERFPLDAAILFSDIL 84 (368)
T ss_dssp SSSCBSCCHHHHHHTTCCCSSCCBCCTTSSSTTSHHHHHHHHHHSSHHHHHHSHHHHHHHHHHHHHHSCCSCEECCCCTT
T ss_pred cCCcccchHHHHHHcCCCCCCCCEEeeHhhhhccHHHHHHHhcCCCHHHHHcCHHHHHHHHHHHHHHhCCCEEEeccccc
Confidence 48889999999 9999999999999999999999999999997 99999999999999999999999999999999999
Q ss_pred hhhhhCCCeeeecCCCCCccCCCCCCHHHHhccCCCccchhhHHHHHHHHHHHHHHcCC-----CccEEEecccHHHHHH
Q psy10925 87 VIPQALGMVVEMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKELNYVFEAITLTRHKLEG-----KVPLIGFSGAPWTLMS 161 (214)
Q Consensus 87 ~~aEa~G~~v~~~~~~~P~v~~~i~~~edl~~l~~~~d~~~r~~~~leai~~l~~~~g~-----~vpv~~~v~gP~TlA~ 161 (214)
+++||||+++.|.++.+|++.+||++.+|+++|+++ |++++++.+++|++++++++++ ++|++|+++||||+|+
T Consensus 85 ~~~ea~G~~v~~~~~~gP~~~~pi~~~~d~~~l~~~-~~~~~l~~v~eai~~l~~~l~~~~~~~~vpligf~gaP~Tla~ 163 (368)
T 4exq_A 85 TIPDAMGLGLDFAAGEGPKFAHPVRTEADVAKLAVP-DIGATLGYVTDAVREIRRALTDGEGRQRVPLIGFSGSPWTLAC 163 (368)
T ss_dssp HHHHHTTTCEEC----CCEESSCCCSHHHHHTCCCC-CHHHHSHHHHHHHHHHHHHTBCTTSCBSSCEEEEEECHHHHHH
T ss_pred hhHHHcCCeEEeCCCCCCCCCCCCCCHHHHHhccCC-ChhHHHHHHHHHHHHHHHHhCCcCcccceeEEEeCCcHHHHHH
Confidence 999999999999998899987799999999999988 8877999999999999999998 8999999999999999
Q ss_pred HHHcCCCCCchHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhc
Q psy10925 162 YMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYPTRLH 205 (214)
Q Consensus 162 ~L~~~~g~~~~~~~~~~l~~~Pe~v~~lL~~~t~~~~~~~~a~~ 205 (214)
+|++|+|++++..++++|+++||.+|++|+++|+.+++|+++|+
T Consensus 164 ~l~~g~~s~~~~~~~~~~~~~Pe~~~~ll~~i~~~~~~y~~~qi 207 (368)
T 4exq_A 164 YMVEGGGSDDFRTVKSMAYARPDLMHRILDVNAQAVAAYLNAQI 207 (368)
T ss_dssp HHHHTBCCSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999985
No 2
>1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A*
Probab=100.00 E-value=3.9e-45 Score=324.79 Aligned_cols=197 Identities=59% Similarity=1.053 Sum_probs=185.8
Q ss_pred CCCCCCccCccc--cCCcccCccchhhhhhhcccchHHHHHHcCCChhhhcCCHHHHHHHHHhHHHhcCCCeeeeCCCcc
Q psy10925 9 MTFPPLKNDRLL--PRGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITLQPIRRFNLDASIIFSDIL 86 (214)
Q Consensus 9 ~~~t~~~~ER~~--l~Ge~~DriPv~~~~~~g~~~p~~~a~~~g~~~~e~~~d~e~~ae~~~~~~~~~g~D~v~i~~d~~ 86 (214)
++||+.++||++ ++|+++||+|||+|+|||+|+|+|++.+.|+++.|+|.|||++++++++++++||+|++++++|+.
T Consensus 9 ~~Mt~~~~er~~~a~~ge~~dr~Pvw~mrqagr~lpey~~~~~~~~~~e~~~~pe~~~e~~l~~~~~~~~D~~~~~~di~ 88 (367)
T 1r3s_A 9 QGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCRSPEACCELTLQPLRRFPLDAAIIFSGIL 88 (367)
T ss_dssp --CCCCSCCHHHHHHHTCCCSSCCBCCTTSSSTTSHHHHHHHHTSCHHHHHTCHHHHHHHHHHHHHHSCCSCEECCCCTT
T ss_pred hhcCcchhHHHHHHHcCCCCCCCceehhhhcCcccHHHHHHhcCCCHHHHhCCHHHHHHHHHHHHHHhCCCEEEeccccc
Confidence 469998899999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhCCCeeeecCCCCCccCCCCCCHHHHhccCCCccchhhHHHHHHHHHHHHHHcCCCccEEEecccHHHHHHHHHcC
Q psy10925 87 VIPQALGMVVEMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEG 166 (214)
Q Consensus 87 ~~aEa~G~~v~~~~~~~P~v~~~i~~~edl~~l~~~~d~~~r~~~~leai~~l~~~~g~~vpv~~~v~gP~TlA~~L~~~ 166 (214)
+++++||+++.|.++.+|++.+||++.+|+++|..+.+++++++.++++++++++++++++|++|+++||||+|++|++|
T Consensus 89 ~~~~a~G~~~~~~~~~gP~~~~pi~~~~d~~~l~~~~~~~~~l~~v~eai~~l~~~~~~~~plig~~~~P~tla~~l~eg 168 (367)
T 1r3s_A 89 VVPQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEG 168 (367)
T ss_dssp HHHHHTTCCCEEETTTEEECSSCCCSGGGGGGSCCGGGHHHHTHHHHHHHHHHHHHHTTSSCEEEEEECHHHHHHHHHHS
T ss_pred ccHHHcCCeEEeCCCCCCCcCCCCCCHHHHHhccCCCCchhhhhHHHHHHHHHHHHcCCCccEEEEcCcHHHHHHHHHcC
Confidence 99999999999999888988779999999999974325678999999999999999999999999999999999999988
Q ss_pred CCCCchHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhc
Q psy10925 167 GGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYPTRLH 205 (214)
Q Consensus 167 ~g~~~~~~~~~~l~~~Pe~v~~lL~~~t~~~~~~~~a~~ 205 (214)
++++++..++++|+++||.+|++|+.+|+.+++|+++|+
T Consensus 169 g~~~~~~~~~~~~~~~Pe~~~~ll~~l~~~~~~~~~~~i 207 (367)
T 1r3s_A 169 GGSSTMAQAKRWLYQRPQASHQLLRILTDALVPYLVGQV 207 (367)
T ss_dssp SCCSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888899999999999999999999999999986
No 3
>1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana tabacum} SCOP: c.1.22.1
Probab=100.00 E-value=3.2e-44 Score=317.06 Aligned_cols=199 Identities=35% Similarity=0.580 Sum_probs=182.2
Q ss_pred cccCCCCCCCCccCccc--cCCcccCccchhhhhhhcccchHHHHHHcCC-ChhhhcCCHHHHHHHHHhHHHhcCCCeee
Q psy10925 4 VSEEKMTFPPLKNDRLL--PRGEEVDKIPIWIMRQAGRYLPEFRELRSKH-DFFTICQTPELAAEITLQPIRRFNLDASI 80 (214)
Q Consensus 4 ~~~~~~~~t~~~~ER~~--l~Ge~~DriPv~~~~~~g~~~p~~~a~~~g~-~~~e~~~d~e~~ae~~~~~~~~~g~D~v~ 80 (214)
|+|.++.||+ +||++ ++|+++||+|||+|+|||||+|+|++.+.|+ ++.++|.|||++++++++++++||+|+++
T Consensus 2 ~~~~~~~~t~--~er~~~a~~g~~~dr~Pv~~mrqagr~lpey~~~~~~~~~~~~~~~~pe~~~e~~l~~~~~~~~D~~~ 79 (353)
T 1j93_A 2 VAEPKAINAT--QPLLLDAVRGKEVERPPVWLMRQAGRYMKSYQLLCEKYPLFRDRSENVDLVVEISLQPWKVFRPDGVI 79 (353)
T ss_dssp ---------C--CCHHHHHHHTCCCSSCCBCCSCCCTTTTTHHHHHHHSSCSTTTTTTCHHHHHHHHHHHHHHHCCSEEE
T ss_pred CccccccCCh--hHHHHHHHCCCCCCcCCeeehHhhccchHHHHHHHhccccHHHHhcCHHHHHHHHHHHHHHhCCCEEE
Confidence 6789999999 69999 9999999999999999999999999999999 99999999999999999999999999999
Q ss_pred eCCCcchhhhhCCCeeeecCCCCCccCCCCCCHHHHhccCCCccchhhHHHHHHHHHHHHHHcCCCccEEEecccHHHHH
Q psy10925 81 IFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLM 160 (214)
Q Consensus 81 i~~d~~~~aEa~G~~v~~~~~~~P~v~~~i~~~edl~~l~~~~d~~~r~~~~leai~~l~~~~g~~vpv~~~v~gP~TlA 160 (214)
+++|+++++++||+++.|.++.+|++.+||++.+|+++|.++ ++.++++.++++++++++++++++|++++++||||+|
T Consensus 80 ~~~di~~~~~a~G~~~~~~~~~gp~~~~pi~~~~d~~~l~~~-~~~~~~~~v~e~~~~l~~~~~~~~~~~g~~~~P~tla 158 (353)
T 1j93_A 80 LFSDILTPLSGMNIPFDIIKGKGPVIFDPLRTAADVEKVREF-IPEKSVPYVGEALTILRKEVNNQAAVLGFVGAPFTLA 158 (353)
T ss_dssp CCCCTTTHHHHTTCCEEEETTTEEEESSCCCSHHHHHHCCCC-CHHHHCHHHHHHHHHHHHHHTTSSEEEEEEECHHHHH
T ss_pred ecCCcccCHHHcCCeEEecCCCCCeeCCCCCCHHHHHhcCCC-ChhhhHHHHHHHHHHHHHHhCCCceEEEecChHHHHH
Confidence 999999999999999999998889887799999999999854 6677899999999999999998999999999999999
Q ss_pred HHHHcCCCCCchHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhc
Q psy10925 161 SYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYPTRLH 205 (214)
Q Consensus 161 ~~L~~~~g~~~~~~~~~~l~~~Pe~v~~lL~~~t~~~~~~~~a~~ 205 (214)
++|++|+|++++..++++++++||.+|++|+.+++.+++|+++|+
T Consensus 159 ~~l~~g~~~~~~~~~~~~~~~~Pe~~~~ll~~l~~~~~~~~~~~~ 203 (353)
T 1j93_A 159 SYVVEGGSSKNFTKIKRLAFAEPKVLHALLQKFATSMAKYIRYQA 203 (353)
T ss_dssp HHHHHSBCCSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCcccHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998889999999999999999999999999999999999986
No 4
>3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri}
Probab=100.00 E-value=5.5e-44 Score=315.60 Aligned_cols=193 Identities=46% Similarity=0.845 Sum_probs=183.8
Q ss_pred CCCccCccc--cCCcccCccchhhhhhhcccchHHHHHHcCC-ChhhhcCCHHHHHHHHHhHHHhcCCCeeeeCCCcchh
Q psy10925 12 PPLKNDRLL--PRGEEVDKIPIWIMRQAGRYLPEFRELRSKH-DFFTICQTPELAAEITLQPIRRFNLDASIIFSDILVI 88 (214)
Q Consensus 12 t~~~~ER~~--l~Ge~~DriPv~~~~~~g~~~p~~~a~~~g~-~~~e~~~d~e~~ae~~~~~~~~~g~D~v~i~~d~~~~ 88 (214)
+++++||++ ++||++||+|||+|+|||+|+|+|++.+.|+ ++.|+|.|||++++++++++++||+|++++++|+.++
T Consensus 2 ~~~~~er~~~a~~g~~~dr~Pv~~mrqagr~~pey~~~~~~~~~~~~~~~~pe~~~e~~l~~~~~~~~D~~~~~~di~~~ 81 (354)
T 3cyv_A 2 TELKNDRYLRALLRQPVDVTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNAELACEVTLQPLRRYPLDAAILFSDILTV 81 (354)
T ss_dssp -CCCCCHHHHHHTTCCCSSCCBCCTTCSSTTSHHHHHHHHHHSSHHHHTTCHHHHHHHHHTGGGTSCCSCEECCCCTTHH
T ss_pred CCCchHHHHHHHcCCCCCCCCeeehhhhccccHHHHHHHhccCCHHHHHcCHHHHHHHHHHHHHHhCCCEEeeccccccc
Confidence 345689999 9999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred hhhCCCeeeecCCCCCccCCCCCCHHHHhccCCCccchhhHHHHHHHHHHHHHHcCCCccEEEecccHHHHHHHHHcCCC
Q psy10925 89 PQALGMVVEMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGG 168 (214)
Q Consensus 89 aEa~G~~v~~~~~~~P~v~~~i~~~edl~~l~~~~d~~~r~~~~leai~~l~~~~g~~vpv~~~v~gP~TlA~~L~~~~g 168 (214)
++|||+++.|.++.+|++.+||++.+|+++|.++ +++++++.++++++++++++++++|++|+++||||+|++|++|+|
T Consensus 82 ~~a~G~~~~~~~~~gp~~~~pi~~~~d~~~l~~~-~~~~~~~~v~eai~~l~~~~~~~~plig~~~~P~tla~~l~~g~~ 160 (354)
T 3cyv_A 82 PDAMGLGLYFEAGEGPRFTSPVTCKADVDKLPIP-DPEDELGYVMNAVRTIRHELKGEVPLIGFSGSPWTLATYMVEGGS 160 (354)
T ss_dssp HHTTTSCEEECSSSCEEESSCCCSHHHHHTCCCC-CTTTTTHHHHHHHHHHHHHTTTSSCEEEEEECHHHHHHHHHHSSC
T ss_pred HHHcCCeEEeCCCCCCccCCCCCCHHHHHhcCCC-ChhhhHHHHHHHHHHHHHHhCCCeeEEEeCCcHHHHHHHHhCCCC
Confidence 9999999999998899887799999999999866 778899999999999999999899999999999999999999889
Q ss_pred CCchHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhc
Q psy10925 169 SKTMSKSKHWLYKYPEESKKLLEILTNVIVDYPTRLH 205 (214)
Q Consensus 169 ~~~~~~~~~~l~~~Pe~v~~lL~~~t~~~~~~~~a~~ 205 (214)
++++..++++|+++||.+|++|+.+++.+++|+++|+
T Consensus 161 ~~~~~~~~~~~~~~Pe~~~~ll~~l~~~~~~~~~~~~ 197 (354)
T 3cyv_A 161 SKAFTVIKKMMYADPQALHALLDKLAKSVTLYLNAQI 197 (354)
T ss_dssp CSSCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999986
No 5
>2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel, eight parallel beta strands surrounded by eight alpha helices, lyase; 2.30A {Bacillus subtilis}
Probab=100.00 E-value=8.9e-43 Score=308.66 Aligned_cols=193 Identities=40% Similarity=0.707 Sum_probs=181.4
Q ss_pred CCCCCCccCccc--cCCcccCccchhhhhhhcccchHHHHHHcCCChhhhcCCHHHHHHHHHhHHHhcCCCeeeeCCCcc
Q psy10925 9 MTFPPLKNDRLL--PRGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITLQPIRRFNLDASIIFSDIL 86 (214)
Q Consensus 9 ~~~t~~~~ER~~--l~Ge~~DriPv~~~~~~g~~~p~~~a~~~g~~~~e~~~d~e~~ae~~~~~~~~~g~D~v~i~~d~~ 86 (214)
..+|+ +||++ ++|+++||+|||+|+|||||+|+|++.+.|+++.|+|.|||+++|++++++++||+|++++++|++
T Consensus 9 ~~~t~--~er~~~al~g~~~dr~Pvw~mrqagr~lpey~~~~~~~~~~~~~~~pe~~~e~~l~~~~~~~~D~~~~~~di~ 86 (359)
T 2inf_A 9 KRETF--NETFLKAARGEKADHTPVWYMRQAGRSQPEYRKLKEKYGLFEITHQPELCAYVTRLPVEQYGVDAAILYKDIM 86 (359)
T ss_dssp ---CC--CCHHHHHHTTCCCSSCCBCCTTSSSTTSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCSCEECCCCTT
T ss_pred ccCCh--HHHHHHHHcCCCCCcCCEeehhhhCcccHHHHHHHcCCCHHHHhCCHHHHHHHHHHHHHHhCCCEEEeccccc
Confidence 45788 69999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhCCCeeeecCCCCCccCCCCCCHHHHhccCCCccchhhHHHHHHHHHHHHHHcCCCccEEEecccHHHHHHHHHcC
Q psy10925 87 VIPQALGMVVEMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEG 166 (214)
Q Consensus 87 ~~aEa~G~~v~~~~~~~P~v~~~i~~~edl~~l~~~~d~~~r~~~~leai~~l~~~~g~~vpv~~~v~gP~TlA~~L~~~ 166 (214)
++++|||+++.|.++.+|++.+||++.+|+++|+++ +++++++.++++++.+++++ +++|++++++||||+|++|++|
T Consensus 87 ~~~~a~G~~~~~~~~~gP~~~~pi~~~~d~~~l~~~-~~~~~l~~~~ea~~~l~~~~-~~~~l~g~~~~P~tla~~l~~g 164 (359)
T 2inf_A 87 TPLPSIGVDVEIKNGIGPVIDQPIRSLADIEKLGQI-DPEQDVPYVLETIKLLVNEQ-LNVPLIGFSGAPFTLASYMTEG 164 (359)
T ss_dssp TTGGGGTCCEECCSSSCCEESSCCCSHHHHHTCCCC-CHHHHSHHHHHHHHHHHHHT-CSSCEEEEEECHHHHHHHHHHC
T ss_pred ccHHHcCCEEEecCCCCCCcCCCCCCHHHHHhcCCC-CccchHHHHHHHHHHHHHHh-CCcceEEEcCcHHHHHHHHHcC
Confidence 999999999999998899887799999999999866 77889999999999999999 6799999999999999999987
Q ss_pred CCCCchHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhc
Q psy10925 167 GGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYPTRLH 205 (214)
Q Consensus 167 ~g~~~~~~~~~~l~~~Pe~v~~lL~~~t~~~~~~~~a~~ 205 (214)
++++++..++++++++||.+|++|+.+++.+++|+++|+
T Consensus 165 g~s~~~~~~~~~~~~~Pe~~~~ll~~i~~~~~~~~~~~~ 203 (359)
T 2inf_A 165 GPSKNYNKTKAFMYSMPDAWNLLMSKLADMIIVYVKAQI 203 (359)
T ss_dssp SCCSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888899999999999999999999999999986
No 6
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus}
Probab=100.00 E-value=4.3e-42 Score=301.76 Aligned_cols=186 Identities=43% Similarity=0.819 Sum_probs=175.5
Q ss_pred CCCCccCccc--cCCcccCccchhhhhhhcccchHHHHHHcCC-ChhhhcCCHHHHHHHHHhHHHhcCCCeeeeCCCcch
Q psy10925 11 FPPLKNDRLL--PRGEEVDKIPIWIMRQAGRYLPEFRELRSKH-DFFTICQTPELAAEITLQPIRRFNLDASIIFSDILV 87 (214)
Q Consensus 11 ~t~~~~ER~~--l~Ge~~DriPv~~~~~~g~~~p~~~a~~~g~-~~~e~~~d~e~~ae~~~~~~~~~g~D~v~i~~d~~~ 87 (214)
||+ +||++ ++||++||+|||+|+|||+|+|+|++.+.|+ ++.+++.|||.+++++++++++||+|++++++|+++
T Consensus 1 Mt~--~er~~~a~~g~~~dr~Pv~~mrqagr~lpe~~~~~~~~~~~~~~~~~pe~~~e~~~~~~~~~~~D~~~~~~di~~ 78 (338)
T 2eja_A 1 MPK--NDLLLRSLRGEPIGRFPVWLMRQAGRYMPEYRKIRNRVKNFLELCKNVDLATEISLLPLKILGVDAIIIFSDILV 78 (338)
T ss_dssp -CC--CCHHHHHHTTCCCSSCCBCCTTCSSTTSHHHHHHHTTSSSHHHHHHCHHHHHHHHHHHHHHHCCSCEECSCCTTG
T ss_pred CCc--hHHHHHHHcCCCCCCCCcchhhhhccccHHHHHHHhccccHHHHhCCHHHHHHHHHHHHHHhCCCEEEeccCcce
Confidence 788 69999 9999999999999999999999999999999 899999999999999999999999999999999999
Q ss_pred hhhhCCCeeeecCCCCCccCCCCCCHHHHhccCCCccchhhHHHHHHHHHHHHHHcCCCccEEEecccHHHHHHHHHcCC
Q psy10925 88 IPQALGMVVEMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGG 167 (214)
Q Consensus 88 ~aEa~G~~v~~~~~~~P~v~~~i~~~edl~~l~~~~d~~~r~~~~leai~~l~~~~g~~vpv~~~v~gP~TlA~~L~~~~ 167 (214)
++++||+++.|.++.+|.+ ++.+|+++|+++ ++ ++++.++++++++++++ +++|++|+++||||+|++|++|+
T Consensus 79 ~~~a~G~~~~~~~~~gP~i----~~~~d~~~l~~~-~~-~~l~~v~eai~~l~~~~-~~~plig~~~~P~tla~~l~egg 151 (338)
T 2eja_A 79 PLEPLGVKVEFVEGEGPKL----SWSGKVSDLKKY-DP-SQNAYVYEIIKRVKEAQ-DEVPVIGFAGAPFTLLSYLIEGG 151 (338)
T ss_dssp GGGGGTCEEEEETTTEEEE----ECCSCGGGSCCC-CG-GGGHHHHHHHHHHHHHC-CSSCEEEEEECHHHHHHHHHHTS
T ss_pred eHHHcCCeEEeCCCCCCCC----CCHHHHHhcCCC-Ch-hhhHHHHHHHHHHHHHh-cCccEEEecchHHHHHHHHHcCC
Confidence 9999999999998777866 677899999766 77 89999999999999999 77999999999999999999987
Q ss_pred CCCchHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhc
Q psy10925 168 GSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYPTRLH 205 (214)
Q Consensus 168 g~~~~~~~~~~l~~~Pe~v~~lL~~~t~~~~~~~~a~~ 205 (214)
+++++..++++++++||.+|++|+.+++.+++|+++|+
T Consensus 152 ~~~~~~~~~~~~~~~Pe~~~~ll~~i~~~~~~~~~~~~ 189 (338)
T 2eja_A 152 ASKDFKSTKLFMWENPKEYKRLMDILTETVLAYLKEQI 189 (338)
T ss_dssp CCSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999888899999999999999999999999999986
No 7
>4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A
Probab=100.00 E-value=2.3e-41 Score=298.47 Aligned_cols=183 Identities=26% Similarity=0.401 Sum_probs=163.7
Q ss_pred CCCCCccCccc--cCCcccCccchhhhhhhcccchHHHHHHcCCChhhhcCCHHHHHHHHHhHHHhcCCCeeeeCCCcch
Q psy10925 10 TFPPLKNDRLL--PRGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITLQPIRRFNLDASIIFSDILV 87 (214)
Q Consensus 10 ~~t~~~~ER~~--l~Ge~~DriPv~~~~~~g~~~p~~~a~~~g~~~~e~~~d~e~~ae~~~~~~~~~g~D~v~i~~d~~~ 87 (214)
+||| |||++ ++||++||+|||+|+||| ++++.... |+++.|+|.|||+++|++++++++||+|++++++|+++
T Consensus 12 ~MT~--kER~l~al~ge~~DR~Pvw~mrqag--~~e~~~~~-~~~f~e~~~~pe~~ae~tl~~~~~~~~Da~iifsDil~ 86 (348)
T 4ay7_A 12 EFTL--KTRLLAALKGEPVDKVPVCSVTQTG--IVELMDVV-GAPWPEAHTNPELMAKLALANHELSGLEAVRLPYCLTV 86 (348)
T ss_dssp CCCH--HHHHHHHHHTCCCSSCCBCCSSCCC--CHHHHHHH-TCCTTHHHHCHHHHHHHHHHHHHTTCCSSEEECSCSCH
T ss_pred cCCH--HHHHHHHHcCCCCCCCCEEechhhh--HHHHHHHh-CCCHHHHhCCHHHHHHHHHHHHHHhCCCEEEecCcccc
Confidence 6999 79999 999999999999999999 67887654 89999999999999999999999999999999999999
Q ss_pred hhhhCCCeeeecC-CCCCccC-CCCCCHHHHhccCCCccc--hhhHHHHHHHHHHHHHHcCCCccEEEecccHHHHHHHH
Q psy10925 88 IPQALGMVVEMKP-AVGPVLP-EPLVIPEDIKKLKTSVDV--YKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYM 163 (214)
Q Consensus 88 ~aEa~G~~v~~~~-~~~P~v~-~~i~~~edl~~l~~~~d~--~~r~~~~leai~~l~~~~g~~vpv~~~v~gP~TlA~~L 163 (214)
++||||+++.|.+ +.+|.+. .++.+ |++.+..+.++ +++++.+++|++++++++++++|++|+++||||+|++|
T Consensus 87 ~~ea~G~~v~~~~~~~~P~v~~~~~~~--~~~~~~~~~~~~~~~~l~~v~eai~~l~~~l~~~~pligf~g~P~Tla~~l 164 (348)
T 4ay7_A 87 LVEAMGCEINMGTKNRQPSVTGHPYPK--DLEGAAVPADLLQRGRIPVVLEAIKIIREKVGPDVPIVGGMEGPVTVASDL 164 (348)
T ss_dssp HHHHTTCEEECCBTTBCCEEEECSCSS--CCTTCCCCTTGGGSTTHHHHHHHHHHHHHHHCTTSCEEEEEECHHHHHHHH
T ss_pred chHHcCCeEEecCCCCCCccccCCCcc--hHHHhhCCccccchhhHHHHHHHHHHHHHHhCCCeeEEEeccchHHHHHhc
Confidence 9999999999954 6678876 46653 44555544233 78999999999999999999999999999999999999
Q ss_pred HcCCCCCchHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhc
Q psy10925 164 IEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYPTRLH 205 (214)
Q Consensus 164 ~~~~g~~~~~~~~~~l~~~Pe~v~~lL~~~t~~~~~~~~a~~ 205 (214)
+ |.++++ ++++++||.+|++|+++|+.+++|+++|+
T Consensus 165 ~---~~~~~~---~~~~~~pe~~~~ll~~i~~~~~~~~~~qi 200 (348)
T 4ay7_A 165 V---SVKSFM---KWSIKKTDLLEQALDIATEASIIYANAMV 200 (348)
T ss_dssp H---CHHHHH---HHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c---cchHHH---HHHHHChHhHHHHHHHHHHHHHHHHHHHH
Confidence 9 555555 99999999999999999999999999986
No 8
>1ypx_A Putative vitamin-B12 independent methionine synth protein; alpha-beta protein; 2.60A {Listeria monocytogenes}
Probab=88.25 E-value=0.57 Score=40.96 Aligned_cols=136 Identities=9% Similarity=-0.021 Sum_probs=69.7
Q ss_pred CChhhhcCCHHHHHHHHHhHHHhcCCCeeeeC----CCcc-hhhhhCCCeeeecCCCCCccCCCCCCHHH-HhccCCCcc
Q psy10925 51 HDFFTICQTPELAAEITLQPIRRFNLDASIIF----SDIL-VIPQALGMVVEMKPAVGPVLPEPLVIPED-IKKLKTSVD 124 (214)
Q Consensus 51 ~~~~e~~~d~e~~ae~~~~~~~~~g~D~v~i~----~d~~-~~aEa~G~~v~~~~~~~P~v~~~i~~~ed-l~~l~~~~d 124 (214)
.+-.+|..--+......++.++..|+|.+.=+ .|+. ...+.+.+--.|..++. + .+.+... ........+
T Consensus 33 i~~~~l~~~~~~~i~~~v~~Q~~~GldvvtdGE~~R~d~~~~f~~~l~G~~~~~~~~~--~--~f~~~~~~~~~p~i~g~ 108 (375)
T 1ypx_A 33 ITALELRKIENTEIKYIVEKQKEVGLKSITDGEFRRAWWHFDFLENLDGVEGYDAAGG--I--QFSKVQTKSHSVKITGP 108 (375)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSEECCTTTTC--CCHHHHTTSEEEEEC--------------------CEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcchhhHHHHHHHHCCCeeeecCCCc--e--eecCCCCCccCceecCC
Confidence 44455555556667778888999999987332 1211 22344432222322211 1 0111111 111111101
Q ss_pred ch-hhHHHHHHHHHHHHHHcCCCcc-EEEecccHHHHHHHHHcCCCCCchHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Q psy10925 125 VY-KELNYVFEAITLTRHKLEGKVP-LIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYPT 202 (214)
Q Consensus 125 ~~-~r~~~~leai~~l~~~~g~~vp-v~~~v~gP~TlA~~L~~~~g~~~~~~~~~~l~~~Pe~v~~lL~~~t~~~~~~~~ 202 (214)
.+ ..=+ +++.++.+++..++ .| +-+++.||+|++..+. ..+++ | ++.++++++-+++.+.+.++
T Consensus 109 i~~~~~p-~~~~~~~l~~~~~~-~~~vK~~l~gP~tl~~~~~---~~~~~-------Y--~~~~~~l~~~la~a~~~ei~ 174 (375)
T 1ypx_A 109 IDFTTHP-FIEDFIFLKEAVGD-NHVAKQTIPSPAMLHYRGD---IEYQP-------Y--LDDAEKFANDLATAYQKAIQ 174 (375)
T ss_dssp EECSCCT-HHHHHHHHHHHHCS-SSEECEEEECTHHHHHHEE---ECSHH-------H--HHCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCc-hHHHHHHHHHHhcC-CCceEEecCCHHHHHHHHh---cchhh-------c--cChHHHHHHHHHHHHHHHHH
Confidence 11 1123 77888888887654 56 6999999999999886 33332 2 12235666666666666666
Q ss_pred Hh
Q psy10925 203 RL 204 (214)
Q Consensus 203 a~ 204 (214)
++
T Consensus 175 ~l 176 (375)
T 1ypx_A 175 AF 176 (375)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 9
>2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; structural genomics, target 6426D, PSI; 1.90A {Streptococcus mutans} PDB: 3l7s_A 3l7r_A 3t0c_A
Probab=82.74 E-value=1.7 Score=41.48 Aligned_cols=59 Identities=15% Similarity=0.191 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHcCCCccEEEecccHHHHHHHHHcCCCCCchHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhc
Q psy10925 130 NYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYPTRLH 205 (214)
Q Consensus 130 ~~~leai~~l~~~~g~~vpv~~~v~gP~TlA~~L~~~~g~~~~~~~~~~l~~~Pe~v~~lL~~~t~~~~~~~~a~~ 205 (214)
+..++.++.+++..+ .||.+.+.||+|+++.+. +.. +...+++++.+++.+.++++++.
T Consensus 522 p~~ve~~~~l~~~t~--~pvK~~l~GP~Tl~~~~~---~r~------------~~~~~el~~~lA~a~~~ei~~L~ 580 (755)
T 2nq5_A 522 PITVEETVYAQSLTD--RPVKGMLTGPITITNWSF---ERT------------DIPRDQLFNQIGLAIKDEIKLLE 580 (755)
T ss_dssp CSSHHHHHHHHHTCS--SCBEEEEECHHHHHHHSB---CCS------------SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcC--CCeEEEecCHHHHHHHHh---ccC------------cccHHHHHHHHHHHHHHHHHHHH
Confidence 447788898988764 488999999999999888 311 12456778888888888777653
No 10
>1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A*
Probab=73.06 E-value=2.1 Score=40.90 Aligned_cols=59 Identities=12% Similarity=0.120 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHcCCCccEEEecccHHHHHHHHHcCCCCCchHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhc
Q psy10925 130 NYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYPTRLH 205 (214)
Q Consensus 130 ~~~leai~~l~~~~g~~vpv~~~v~gP~TlA~~L~~~~g~~~~~~~~~~l~~~Pe~v~~lL~~~t~~~~~~~~a~~ 205 (214)
+..++.++.+++..+ .||.+.+.||+|+++.+.. . ++...+++++.+++.+.++++++.
T Consensus 537 p~~ve~~~~l~~~~~--~pvK~~l~GP~Tl~~~~~~---r------------~~~~~~~l~~~lA~a~~~ev~~L~ 595 (765)
T 1u1j_A 537 AMTVFWSAMAQSMTS--RPMKGMLTGPVTILNWSFV---R------------NDQPRHETCYQIALAIKDEVEDLE 595 (765)
T ss_dssp CSSTHHHHHHTTSCS--SCBEEEEECHHHHHHTSEE---C------------TTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhc--CCeEEEecCHHHHHHHHhc---c------------CcCcHHHHHHHHHHHHHHHHHHHH
Confidence 336778888888753 4889999999999998872 1 122456778888888888777653
No 11
>2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; structural genomics, target 6426D, PSI; 1.90A {Streptococcus mutans} PDB: 3l7s_A 3l7r_A 3t0c_A
Probab=63.37 E-value=5.9 Score=37.80 Aligned_cols=31 Identities=10% Similarity=-0.144 Sum_probs=25.3
Q ss_pred CChhhhcCCHHHHHHHHHhHHHhcCCCeeee
Q psy10925 51 HDFFTICQTPELAAEITLQPIRRFNLDASII 81 (214)
Q Consensus 51 ~~~~e~~~d~e~~ae~~~~~~~~~g~D~v~i 81 (214)
.+..++..-.+.+-..+.+.++..|+|.+..
T Consensus 32 i~~~~L~~~~~~~r~~~~~~q~~aGid~i~~ 62 (755)
T 2nq5_A 32 VSKNDLFAGAKELRLDFLKKQLNAGLDLIPV 62 (755)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTTCSBEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCCCccc
Confidence 6666777777888888999999999998764
No 12
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=50.43 E-value=23 Score=29.69 Aligned_cols=60 Identities=18% Similarity=0.205 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHcCCCccEEE--ecccHHHHHHHHHcCCCCCchHHHHHHH-HhCHHHHHHHHH
Q psy10925 129 LNYVFEAITLTRHKLEGKVPLIG--FSGAPWTLMSYMIEGGGSKTMSKSKHWL-YKYPEESKKLLE 191 (214)
Q Consensus 129 ~~~~leai~~l~~~~g~~vpv~~--~v~gP~TlA~~L~~~~g~~~~~~~~~~l-~~~Pe~v~~lL~ 191 (214)
.+..++.++.+++.+++++||++ .|..|-.....|.. |.+.. .+-+.+ +++|+.+.++.+
T Consensus 272 ~~~~~~~i~~i~~~~~~~ipVi~~GGI~~~~da~~~l~~--GAd~V-~igr~~l~~~P~~~~~i~~ 334 (336)
T 1f76_A 272 QLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAA--GASLV-QIYSGFIFKGPPLIKEIVT 334 (336)
T ss_dssp HHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHHH--TCSEE-EESHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHC--CCCEE-EeeHHHHhcCcHHHHHHHh
Confidence 45677899999999887899876 68899999988876 54433 233454 459999988765
No 13
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=47.50 E-value=40 Score=29.04 Aligned_cols=66 Identities=15% Similarity=0.144 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHcCCCccEEE--ecccHHHHHHHHHcCCCCCchHHHHHH-HHhCHHHHHHHHHHHHHHH
Q psy10925 129 LNYVFEAITLTRHKLEGKVPLIG--FSGAPWTLMSYMIEGGGSKTMSKSKHW-LYKYPEESKKLLEILTNVI 197 (214)
Q Consensus 129 ~~~~leai~~l~~~~g~~vpv~~--~v~gP~TlA~~L~~~~g~~~~~~~~~~-l~~~Pe~v~~lL~~~t~~~ 197 (214)
.+.-++.++.+++.+++++||++ .|..+-.....|.. |.+... +-+. ++.+|..+.++.+-+.+.+
T Consensus 281 ~p~a~~~v~~i~~~v~~~ipvI~~GGI~s~~da~~~l~~--GAd~V~-vgra~l~~gP~~~~~i~~~l~~~m 349 (367)
T 3zwt_A 281 RDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRA--GASLVQ-LYTALTFWGPPVVGKVKRELEALL 349 (367)
T ss_dssp HHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHH--TCSEEE-ESHHHHHHCTHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHcCCCceEEEECCCCCHHHHHHHHHc--CCCEEE-ECHHHHhcCcHHHHHHHHHHHHHH
Confidence 46678999999999988899876 68888888777764 443322 2244 4788998877776665443
No 14
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}
Probab=46.56 E-value=35 Score=29.22 Aligned_cols=66 Identities=11% Similarity=0.109 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHcCCCccEEE--ecccHHHHHHHHHcCCCCCchHHHHHH-HHhCHHHHHHHHHHHHHHH
Q psy10925 129 LNYVFEAITLTRHKLEGKVPLIG--FSGAPWTLMSYMIEGGGSKTMSKSKHW-LYKYPEESKKLLEILTNVI 197 (214)
Q Consensus 129 ~~~~leai~~l~~~~g~~vpv~~--~v~gP~TlA~~L~~~~g~~~~~~~~~~-l~~~Pe~v~~lL~~~t~~~ 197 (214)
.+.-++.++.+++.+++++||++ .|..+-.....|.. |.+.. .+-+. ++.+|..+.++.+-+.+..
T Consensus 258 ~p~a~~~v~~i~~~~~~~ipIIg~GGI~s~~da~~~l~a--GAd~V-~igra~~~~gP~~~~~i~~~L~~~l 326 (345)
T 3oix_A 258 KPTALANVHAFYKRLNPSIQIIGTGGVXTGRDAFEHILC--GASMV-QIGTALHQEGPQIFKRITKELXAIM 326 (345)
T ss_dssp HHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHH--TCSEE-EESHHHHHHCTHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCCCcEEEECCCCChHHHHHHHHh--CCCEE-EEChHHHhcChHHHHHHHHHHHHHH
Confidence 35568999999999987899876 68888888887765 44332 23355 7899998887776665544
No 15
>1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A*
Probab=44.60 E-value=6 Score=37.77 Aligned_cols=31 Identities=0% Similarity=-0.222 Sum_probs=24.7
Q ss_pred CChhhhcCCHHHHHHHHHhHHHhcCCCeeee
Q psy10925 51 HDFFTICQTPELAAEITLQPIRRFNLDASII 81 (214)
Q Consensus 51 ~~~~e~~~d~e~~ae~~~~~~~~~g~D~v~i 81 (214)
.+..++..-.+.....+.+.++..|+|.+..
T Consensus 29 i~~~~L~~~~~~~~~~~~~~Q~~aGld~i~~ 59 (765)
T 1u1j_A 29 STAEDLQKVSADLRSSIWKQMSAAGTKFIPS 59 (765)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTTCSBCEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCCEecc
Confidence 5666666777888888899999999998754
No 16
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=43.53 E-value=41 Score=27.69 Aligned_cols=65 Identities=11% Similarity=0.149 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHcCCCccEEE--ecccHHHHHHHHHcCCCCCchHHHHHHHH-hCHHHHHHHHHHHHHH
Q psy10925 129 LNYVFEAITLTRHKLEGKVPLIG--FSGAPWTLMSYMIEGGGSKTMSKSKHWLY-KYPEESKKLLEILTNV 196 (214)
Q Consensus 129 ~~~~leai~~l~~~~g~~vpv~~--~v~gP~TlA~~L~~~~g~~~~~~~~~~l~-~~Pe~v~~lL~~~t~~ 196 (214)
.+.-++.++.+++.+++++||++ .|..|-.....|.. |.+.. .+-+.+. ++|+.+.++.+-+.+.
T Consensus 225 ~~~~~~~i~~v~~~~~~~ipvi~~GGI~~~~da~~~l~~--GAd~V-~vg~~~l~~~p~~~~~i~~~l~~~ 292 (311)
T 1jub_A 225 KPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLC--GATML-QIGTALHKEGPAIFDRIIKELEEI 292 (311)
T ss_dssp HHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHH--TCSEE-EECHHHHHHCTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHc--CCCEE-EEchHHHhcCcHHHHHHHHHHHHH
Confidence 34568899999999877899865 67888888887765 44333 2335555 5998777776655443
No 17
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=37.92 E-value=19 Score=25.83 Aligned_cols=31 Identities=13% Similarity=0.216 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcccccc
Q psy10925 183 PEESKKLLEILTNVIVDYPTRLHYFPSYRIR 213 (214)
Q Consensus 183 Pe~v~~lL~~~t~~~~~~~~a~~~~~~~~~~ 213 (214)
++.+..++.-|.+.-.....+-.|.|+|.+|
T Consensus 57 ~~~ld~i~~~I~~Lqk~v~das~fLp~YD~R 87 (111)
T 2l3l_A 57 VERLEEAASRLQGLQKLINDSVFFLAAYDLR 87 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTTSCHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhccHHHHH
Confidence 4556778888888888899999999999886
No 18
>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1
Probab=36.08 E-value=45 Score=29.63 Aligned_cols=64 Identities=8% Similarity=0.040 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHcCCCccEEE--ecccHHHHHHHHHcCCCCCchHHHHHH-HHhCHHHHHHHHHHHHH
Q psy10925 129 LNYVFEAITLTRHKLEGKVPLIG--FSGAPWTLMSYMIEGGGSKTMSKSKHW-LYKYPEESKKLLEILTN 195 (214)
Q Consensus 129 ~~~~leai~~l~~~~g~~vpv~~--~v~gP~TlA~~L~~~~g~~~~~~~~~~-l~~~Pe~v~~lL~~~t~ 195 (214)
.+..++.++.+++.+++++||++ .|..|-.....|.. |.+.. .+-+. ++.+|..+.++.+-+.+
T Consensus 356 ~~~sl~~i~~v~~~v~~~iPVIg~GGI~s~~DA~e~l~a--GAd~V-qigrall~~gP~l~~~i~~~l~~ 422 (443)
T 1tv5_A 356 KDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEA--GASVC-QLYSCLVFNGMKSAVQIKRELNH 422 (443)
T ss_dssp HHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHT--TEEEE-EESHHHHHHGGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCcEEEECCCCCHHHHHHHHHc--CCCEE-EEcHHHHhcChHHHHHHHHHHHH
Confidence 45568999999999988899977 78999999888875 43322 23344 55699877777666544
No 19
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Probab=34.27 E-value=74 Score=26.14 Aligned_cols=64 Identities=11% Similarity=0.053 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHcCCCccEEE--ecccHHHHHHHHHcCCCCCchHHHHHHHH-hCHHHHHHHHHHHHHH
Q psy10925 129 LNYVFEAITLTRHKLEGKVPLIG--FSGAPWTLMSYMIEGGGSKTMSKSKHWLY-KYPEESKKLLEILTNV 196 (214)
Q Consensus 129 ~~~~leai~~l~~~~g~~vpv~~--~v~gP~TlA~~L~~~~g~~~~~~~~~~l~-~~Pe~v~~lL~~~t~~ 196 (214)
.+..++.++.+++.+ +++||++ .|..|-.....|.. |.+.. .+-+.++ ++|+.+.++.+-+.+.
T Consensus 228 ~p~~~~~i~~v~~~~-~~ipvi~~GGI~~~~da~~~l~~--GAd~V-~ig~~~l~~~p~~~~~i~~~l~~~ 294 (314)
T 2e6f_A 228 LPTALANVNAFYRRC-PDKLVFGCGGVYSGEDAFLHILA--GASMV-QVGTALQEEGPGIFTRLEDELLEI 294 (314)
T ss_dssp HHHHHHHHHHHHHHC-TTSEEEEESSCCSHHHHHHHHHH--TCSSE-EECHHHHHHCTTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhc-CCCCEEEECCCCCHHHHHHHHHc--CCCEE-EEchhhHhcCcHHHHHHHHHHHHH
Confidence 356678999999998 6789866 67889888887765 44333 2335566 5998777776665543
No 20
>1t7l_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; TIM barrel, methyltetrahydrofolate, zinc; 2.00A {Thermotoga maritima} PDB: 3bq5_A 3bq6_A 1xdj_A 1xr2_A* 1xpg_A*
Probab=31.73 E-value=52 Score=31.44 Aligned_cols=104 Identities=15% Similarity=0.148 Sum_probs=56.6
Q ss_pred CChhhhcCCHHHHHHHHHhHHHhcCCCeeeeC----CCcc-hhhhhCCCeeeecCCCCCccCCCCCCHHHHhccCCC---
Q psy10925 51 HDFFTICQTPELAAEITLQPIRRFNLDASIIF----SDIL-VIPQALGMVVEMKPAVGPVLPEPLVIPEDIKKLKTS--- 122 (214)
Q Consensus 51 ~~~~e~~~d~e~~ae~~~~~~~~~g~D~v~i~----~d~~-~~aEa~G~~v~~~~~~~P~v~~~i~~~edl~~l~~~--- 122 (214)
.|..+|..-.+...+-+++.++..|+|.+..+ .|+. ..++.+|+-- +..+ +-. ... +.+...++
T Consensus 462 Is~eeL~~~~~~~i~~~V~~QeeaGLDvItdGEFsR~D~Vldf~~~L~Gi~-~~~~-g~~--~~~----~~~~~~~pi~~ 533 (766)
T 1t7l_A 462 ISKEEYEAFIKEQIKKAIELQEEIGLDVLVHGEFERTDMVEFFAEKLNGIA-TTQN-GWV--LSY----GSRCYRPPIIY 533 (766)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSSBCCCCTTCSSHHHHHHTTSEEEE-CCSS-CCE--EEE----TTEEECCCEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCcchhhHHHHHHHHhCCcc-cccc-ccc--ccc----ccccccCceee
Confidence 66677777777888889999999999976443 2221 2334443321 1111 100 000 00001100
Q ss_pred ccchhhHHHHHHHHHHHHHHcCCCccEEEecccHHHHHHHHH
Q psy10925 123 VDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMI 164 (214)
Q Consensus 123 ~d~~~r~~~~leai~~l~~~~g~~vpv~~~v~gP~TlA~~L~ 164 (214)
.+.....+..++.++.+++ +++ .|+-+.+.||+|++....
T Consensus 534 G~i~ra~pMtlde~~~Aks-l~~-~pvK~~LtGPvTlL~ls~ 573 (766)
T 1t7l_A 534 GTVTRPEPMTLKEITYAQS-LTE-KPVKGMLTGPVTIMSWSY 573 (766)
T ss_dssp EEEECCSCSSHHHHHHHHH-TCS-SCBEEEEECHHHHHHTSE
T ss_pred cCCccCCcChHHHHHHHHH-hcC-CCeEEEEeCHHHHHHHhh
Confidence 0000012224777777776 454 578999999999997654
No 21
>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*
Probab=28.23 E-value=71 Score=28.13 Aligned_cols=65 Identities=9% Similarity=0.060 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHcCCCccEEE--ecccHHHHHHHHHcCCCCCchHHHHHHH-HhCHHHHHHHHHHHHHH
Q psy10925 129 LNYVFEAITLTRHKLEGKVPLIG--FSGAPWTLMSYMIEGGGSKTMSKSKHWL-YKYPEESKKLLEILTNV 196 (214)
Q Consensus 129 ~~~~leai~~l~~~~g~~vpv~~--~v~gP~TlA~~L~~~~g~~~~~~~~~~l-~~~Pe~v~~lL~~~t~~ 196 (214)
.+.-++.++.+++.+++++||++ .|..+=.....|.. |.+.. .+-+.+ +..|..+.++.+-+.+.
T Consensus 328 ~p~al~~I~~v~~~v~~~iPIIg~GGI~s~eDa~e~l~a--GAd~V-qIgra~l~~GP~~~~~i~~~L~~~ 395 (415)
T 3i65_A 328 KDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEA--GASVC-QLYSCLVFNGMKSAVQIKRELNHL 395 (415)
T ss_dssp HHHHHHHHHHHHHHTTTCSCEEECSSCCSHHHHHHHHHH--TEEEE-EESHHHHHHGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHc--CCCEE-EEcHHHHhcCHHHHHHHHHHHHHH
Confidence 57788999999999988899976 68888887777775 43222 222444 45588777776665543
No 22
>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction, SAM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=24.16 E-value=61 Score=21.94 Aligned_cols=36 Identities=11% Similarity=0.237 Sum_probs=25.5
Q ss_pred CHHHHhccCCCccchhhHHHHHHHHHHHHHHcCCCccEE
Q psy10925 112 IPEDIKKLKTSVDVYKELNYVFEAITLTRHKLEGKVPLI 150 (214)
Q Consensus 112 ~~edl~~l~~~~d~~~r~~~~leai~~l~~~~g~~vpv~ 150 (214)
+.+||..+.+. .+ |--..++.+++.|+.+. ...|++
T Consensus 49 t~~DL~~lGI~-~~-GHrkkIl~ai~~L~~~~-~~~~~~ 84 (91)
T 1x40_A 49 NDSLLQKIGIS-PT-GHRRRILKQLQIILSKM-QDIPIY 84 (91)
T ss_dssp CHHHHHHHTCC-CH-HHHHHHHHHHHHHHHHC-CCCCCC
T ss_pred CHHHHHHCCCC-CH-hHHHHHHHHHHHHHhhc-CCCCee
Confidence 36788888765 44 22366889999999996 456774
No 23
>2l9b_A MRNA 3'-END-processing protein RNA15; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=23.61 E-value=1.1e+02 Score=21.88 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=14.3
Q ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHH
Q psy10925 177 HWLYKYPEESKKLLEILTNVIVDYPTR 203 (214)
Q Consensus 177 ~~l~~~Pe~v~~lL~~~t~~~~~~~~a 203 (214)
.+...||+.+++||+.+=+..-....+
T Consensus 63 ~~~~~nP~~a~~LL~q~PQLAyAl~Qa 89 (109)
T 2l9b_A 63 EWTRAHPEDAASLLELCPQLSFVTAEL 89 (109)
T ss_dssp HHHHHCHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHCchHHHHHHHH
Confidence 445555666666666555544444333
No 24
>3rpd_A Methionine synthase (B12-independent); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, rossmann fold, Zn, TRA; HET: MSE; 1.50A {Shewanella SP}
Probab=23.12 E-value=49 Score=28.37 Aligned_cols=100 Identities=12% Similarity=0.064 Sum_probs=53.0
Q ss_pred CChhhhcCCHHHHHHHHHhHHHhcCCCeeeeC----CCcc-hhhhhCCC-ee------eecCCCCCccCCCCCCHHHHhc
Q psy10925 51 HDFFTICQTPELAAEITLQPIRRFNLDASIIF----SDIL-VIPQALGM-VV------EMKPAVGPVLPEPLVIPEDIKK 118 (214)
Q Consensus 51 ~~~~e~~~d~e~~ae~~~~~~~~~g~D~v~i~----~d~~-~~aEa~G~-~v------~~~~~~~P~v~~~i~~~edl~~ 118 (214)
.+-.+|..--+...+..++.++..|+|.+.=+ .|+. ...|.+.+ .. .+. ++. ....|+- ..+
T Consensus 44 i~~~~l~~~~~~ai~~~V~~Q~~~GldvvtdGE~~R~d~~~~f~~~l~G~~~~~~~~v~~~-~~~-~~~~p~i----~G~ 117 (357)
T 3rpd_A 44 LQGEELITGKHDALRLSLQDQQLAGIDIVSDGEQTRQHFVTTFIEHLNGVDFSKRKIVKIR-DRY-DASVPTV----VGP 117 (357)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTCSSBCCTTTTCSCTTHHHHHTSEEEEEEEEEEEEET-TTE-EEEEEEE----EEE
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCcchhhHHHHHHHhCCCeeeccCcccccc-CCc-eeeCCEE----Ecc
Confidence 44444555556777778888999999987443 2322 34455532 21 111 100 0000100 011
Q ss_pred cCCCccchhhHHHHHHHHHHHHHHcCCCccEEEecccHHHHHHHHH
Q psy10925 119 LKTSVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMI 164 (214)
Q Consensus 119 l~~~~d~~~r~~~~leai~~l~~~~g~~vpv~~~v~gP~TlA~~L~ 164 (214)
+... . +..++.++.+++..+ .|+-+++.||.|++....
T Consensus 118 v~~~-~-----~~~v~~~~~~~~~t~--~~vK~~lpgP~t~~~~~~ 155 (357)
T 3rpd_A 118 VSRQ-K-----SVFVEDAKFLRKQTT--QPIKWALPGPMTMIDTLY 155 (357)
T ss_dssp EECC-S-----CSSHHHHHHHHHHCS--SCBEEEEECHHHHHTSSE
T ss_pred CCCC-C-----CCcHHHHHHHHhhcc--CCceEEeCCHHHHHHHhh
Confidence 1111 1 123456777777653 589999999999986443
No 25
>4hnl_A Mandelate racemase/muconate lactonizing enzyme; dehydratase, magnesium binding, enzyme function initiative,; 1.48A {Enterococcus gallinarum EG2} PDB: 3s47_A
Probab=20.47 E-value=1.6e+02 Score=25.36 Aligned_cols=38 Identities=3% Similarity=-0.009 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHHHHHcCCCccEEEecccHHHHHHHHH
Q psy10925 127 KELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMI 164 (214)
Q Consensus 127 ~r~~~~leai~~l~~~~g~~vpv~~~v~gP~TlA~~L~ 164 (214)
..+..-++.++.+|+.+|+++.+..=+-+-||....+.
T Consensus 202 ~~~~~d~~~v~avR~a~G~~~~l~vDan~~~~~~~A~~ 239 (421)
T 4hnl_A 202 DYMETTLKMFAAIKEKYGNQFQMLHDVHERLHPNQAIQ 239 (421)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSEEEEECTTCSCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCceEeccccccCCHHHHHH
Confidence 45677889999999999999999887777676655443
Done!