RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10925
(214 letters)
>gnl|CDD|238368 cd00717, URO-D, Uroporphyrinogen decarboxylase (URO-D) is a dimeric
cytosolic enzyme that decarboxylates the four acetate
side chains of uroporphyrinogen III (uro-III) to create
coproporphyrinogen III, without requiring any prosthetic
groups or cofactors. This reaction is located at the
branching point of the tetrapyrrole biosynthetic
pathway, leading to the biosynthesis of heme,
chlorophyll or bacteriochlorophyll. URO-D deficiency is
responsible for the human genetic diseases familial
porphyria cutanea tarda (fPCT) and hepatoerythropoietic
porphyria (HEP).
Length = 335
Score = 319 bits (821), Expect = e-110
Identities = 104/179 (58%), Positives = 134/179 (74%), Gaps = 1/179 (0%)
Query: 22 RGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITLQPIRRFNLDASII 81
RGE VD+ P+W MRQAGRYLPE+RELR+K+ F +C+ PELAAE+TLQP+RRF +DA+II
Sbjct: 5 RGEPVDRPPVWFMRQAGRYLPEYRELRAKYSFLELCKNPELAAEVTLQPVRRFGVDAAII 64
Query: 82 FSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKELNYVFEAITLTRH 141
FSDILV +A+GM VE GPV+P P+ D+ +L D +EL+YV+EAI LTR
Sbjct: 65 FSDILVPLEAMGMDVEFVEGKGPVIPNPIRTEADVDRLLV-PDPEEELSYVYEAIKLTRK 123
Query: 142 KLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDY 200
+L G+VPLIGF+GAPWTL SYMIEGGGSK +K+K +Y PE LL+ LT+ ++Y
Sbjct: 124 ELPGEVPLIGFAGAPWTLASYMIEGGGSKDFAKAKKMMYTDPEAFHALLDKLTDATIEY 182
>gnl|CDD|233423 TIGR01464, hemE, uroporphyrinogen decarboxylase. This model
represents uroporphyrinogen decarboxylase (HemE), which
converts uroporphyrinogen III to coproporphyrinogen III.
This step takes the pathway toward protoporphyrin IX, a
common precursor of both heme and chlorophyll, rather
than toward precorrin 2 and its products [Biosynthesis
of cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 338
Score = 285 bits (731), Expect = 5e-97
Identities = 104/180 (57%), Positives = 134/180 (74%), Gaps = 2/180 (1%)
Query: 22 RGEEVDKIPIWIMRQAGRYLPEFRELRSKH-DFFTICQTPELAAEITLQPIRRFNLDASI 80
+GE VD+ P+W MRQAGRYLPE+RELR+K DF +C+ P+LA E+TLQPIRRF +DA+I
Sbjct: 7 KGEVVDRPPVWFMRQAGRYLPEYRELRAKAGDFLELCRNPDLAVEVTLQPIRRFGVDAAI 66
Query: 81 IFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKELNYVFEAITLTR 140
IFSDILV QALG+ VE GPV+ P+ ED+++LK D EL+YV+EAI L R
Sbjct: 67 IFSDILVPLQALGLDVEFVEGKGPVISNPIRTAEDVERLKE-FDPESELSYVYEAIKLLR 125
Query: 141 HKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDY 200
+L G+VPLIGF+GAPWTL SYMIEGGGSK +K+K ++Y+ PE LL LT+ ++Y
Sbjct: 126 EELPGEVPLIGFAGAPWTLASYMIEGGGSKDFAKAKRFMYQEPEALHALLNKLTDATIEY 185
>gnl|CDD|234644 PRK00115, hemE, uroporphyrinogen decarboxylase; Validated.
Length = 346
Score = 273 bits (702), Expect = 2e-92
Identities = 98/191 (51%), Positives = 133/191 (69%), Gaps = 4/191 (2%)
Query: 13 PLKNDRLL--PRGEEVDKIPIWIMRQAGRYLPEFRELRSKH-DFFTICQTPELAAEITLQ 69
LKNDR L RGE VD+ P+W+MRQAGRYLPE+R LR+K F +C+ PELAAE+TLQ
Sbjct: 2 ELKNDRFLRALRGEPVDRTPVWMMRQAGRYLPEYRALRAKAGSFLELCKNPELAAEVTLQ 61
Query: 70 PIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKEL 129
P+RR+ +DA+I+FSDIL P A+G+ ++ + GPV P+ D++KL D ++L
Sbjct: 62 PVRRYGVDAAILFSDILTPPDAMGLDLDFEEGEGPVFDNPIRTEADVEKLPVP-DPEEDL 120
Query: 130 NYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKL 189
YV EA+ L R +L G+VPLIGF+GAPWTL +YM+EGGGSK +K+K +Y PE L
Sbjct: 121 PYVLEAVRLLRRELGGEVPLIGFAGAPWTLATYMVEGGGSKDYAKTKAMMYAEPELLHAL 180
Query: 190 LEILTNVIVDY 200
L+ L + + Y
Sbjct: 181 LDKLADATIAY 191
>gnl|CDD|216366 pfam01208, URO-D, Uroporphyrinogen decarboxylase (URO-D).
Length = 338
Score = 245 bits (629), Expect = 2e-81
Identities = 94/190 (49%), Positives = 126/190 (66%), Gaps = 8/190 (4%)
Query: 14 LKNDRLLP--RGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITLQPI 71
N+RLL RGE VD+ P+W+MRQAGRYLPE+R LR+ F C+ PELAAE+TLQP
Sbjct: 1 TPNERLLRALRGEPVDRTPVWLMRQAGRYLPEYRALRAGASFLEACKDPELAAEVTLQPY 60
Query: 72 RRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDIKKLKTSVDV-YKELN 130
RRF LDA+I+FSDILV +A+G V+ GPV+ P+ PED++KL+ + + L
Sbjct: 61 RRFGLDAAILFSDILVEAEAMGCEVDFGEGEGPVVENPIRTPEDVEKLEVPDPLEDERLP 120
Query: 131 YVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLL 190
YV EAI + R +L +VPLIGF G P+TL SY++EG K K +YK PE LL
Sbjct: 121 YVLEAIRILRKELGDEVPLIGFVGGPFTLASYLVEG-----FEKFKKLMYKDPELVHALL 175
Query: 191 EILTNVIVDY 200
+ LT+ +++Y
Sbjct: 176 DKLTDAVIEY 185
>gnl|CDD|223484 COG0407, HemE, Uroporphyrinogen-III decarboxylase [Coenzyme
metabolism].
Length = 352
Score = 243 bits (622), Expect = 2e-80
Identities = 100/191 (52%), Positives = 132/191 (69%), Gaps = 3/191 (1%)
Query: 13 PLKNDRLLP--RGEEVDKIPIWIMRQAGRYLPEFRELRSK-HDFFTICQTPELAAEITLQ 69
KNDR L +G+ VD+ P+W+MRQAGRYLPE+R LR K F C+ PELAAE+TLQ
Sbjct: 4 MTKNDRFLRALKGKPVDRTPVWMMRQAGRYLPEYRALREKGGSFLEACKNPELAAEVTLQ 63
Query: 70 PIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKEL 129
P+RR+ LDA+I+FSDILV P+ALG V GP + +P+ ED++ L +D L
Sbjct: 64 PVRRYGLDAAILFSDILVPPEALGCEVRFGEGKGPSVLKPIRDKEDVELLVPLLDPEGRL 123
Query: 130 NYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKL 189
YV +AI L R KL G+VPLIGF+G+PWTL SY+IEGGGSK SK+K +Y P+ L
Sbjct: 124 PYVLDAIKLLREKLGGEVPLIGFAGSPWTLASYLIEGGGSKDFSKTKAMMYTEPDAVHAL 183
Query: 190 LEILTNVIVDY 200
L+ LT+ +++Y
Sbjct: 184 LDKLTDAVIEY 194
>gnl|CDD|215237 PLN02433, PLN02433, uroporphyrinogen decarboxylase.
Length = 345
Score = 218 bits (557), Expect = 1e-70
Identities = 75/180 (41%), Positives = 114/180 (63%), Gaps = 2/180 (1%)
Query: 22 RGEEVDKIPIWIMRQAGRYLPEFRELRSKH-DFFTICQTPELAAEITLQPIRRFNLDASI 80
RGE+V++ P+W+MRQAGRY+ E+REL K+ F +TP+LA EI+LQP R F D I
Sbjct: 6 RGEKVERPPVWLMRQAGRYMKEYRELCKKYPSFRERSETPDLAVEISLQPWRAFKPDGVI 65
Query: 81 IFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKELNYVFEAITLTR 140
+FSDIL A+G+ ++ GPV+P P+ ED+K+L ++L +V EA+ + R
Sbjct: 66 LFSDILTPLPAMGIPFDIVKGKGPVIPNPIRSEEDVKRLHPLDP-EEKLPFVGEALKILR 124
Query: 141 HKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDY 200
++ + ++GF GAPWTL +Y++EGG SK K + PE LL+ LT+ +++Y
Sbjct: 125 KEVGNEAAVLGFVGAPWTLATYIVEGGSSKNYKVIKKMAFTAPEVLHALLDKLTDAVIEY 184
>gnl|CDD|239548 cd03465, URO-D_like, The URO-D _like protein superfamily includes
bacterial and eukaryotic uroporphyrinogen decarboxylases
(URO-D), coenzyme M methyltransferases and other
putative bacterial methyltransferases. Uroporphyrinogen
decarboxylase (URO-D) decarboxylates the four acetate
side chains of uroporphyrinogen III (uro-III) to create
coproporphyrinogen III, an important branching point of
the tetrapyrrole biosynthetic pathway. The
methyltransferases represented here are important for
ability of methanogenic organisms to use other compounds
than carbon dioxide for reduction to methane.
Length = 330
Score = 101 bits (253), Expect = 1e-25
Identities = 58/185 (31%), Positives = 86/185 (46%), Gaps = 14/185 (7%)
Query: 22 RGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITLQPIRRFNLDASII 81
GE+ D++P+ + EF + K +++T PEL AE + ++F DA +
Sbjct: 5 NGEKPDRVPVGPLLHG--GAAEFIGISLK-EYYTD---PELGAEAQIALYKKFGPDAIKV 58
Query: 82 FSDILVIPQALGMVVEMKPAVGPVLPEPLV--IPEDIKKLKTSVDVYKELNYVFEAITLT 139
FSD+ V +A G + P + PL+ ED L L + EAI L
Sbjct: 59 FSDLFVEAEAFGAEIRYPEDDTPSVEGPLIEDEEEDDDLLPPDPGDSPRLPELLEAIRLL 118
Query: 140 RHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVD 199
+ +L +VP+IG G P+TL S ++ G SK + LY PE KLLE T I+
Sbjct: 119 KEELGDRVPVIGAVGGPFTLASLLM--GASKFLM----LLYTDPELVHKLLEKCTEFIIR 172
Query: 200 YPTRL 204
Y L
Sbjct: 173 YADAL 177
>gnl|CDD|238261 cd00465, URO-D_CIMS_like, The URO-D_CIMS_like protein superfamily
includes bacterial and eukaryotic uroporphyrinogen
decarboxylases (URO-D), coenzyme M methyltransferases
and other putative bacterial methyltransferases, as well
as cobalamine (B12) independent methionine synthases.
Despite their sequence similarities, members of this
family have clearly different functions.
Uroporphyrinogen decarboxylase (URO-D) decarboxylates
the four acetate side chains of uroporphyrinogen III
(uro-III) to create coproporphyrinogen III, an important
branching point of the tetrapyrrole biosynthetic
pathway. The methyltransferases represented here are
important for ability of methanogenic organisms to use
other compounds than carbon dioxide for reduction to
methane, and methionine synthases transfer a methyl
group from a folate cofactor to L-homocysteine in a
reaction requiring zinc.
Length = 306
Score = 95.3 bits (237), Expect = 1e-23
Identities = 38/176 (21%), Positives = 57/176 (32%), Gaps = 24/176 (13%)
Query: 30 PIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITLQPIRRFNLDASII-FSDILVI 88
P+ Q G S + E + LD + D+L +
Sbjct: 1 PVQCEGQTGIMEASETMAIS--EEPGETSKAEWGITLVEPE--EIPLDVIPVHEDDVLKV 56
Query: 89 PQALGMVVEMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKELNYVFEAITLTRHKLEGKVP 148
QALG + P +PE + E IT R E P
Sbjct: 57 AQALGEWAFRYYSQAPSVPEIDE-----------EEDPFREAPALEHITAVRSLEE--FP 103
Query: 149 LIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYPTRL 204
G +G P+T + + G + LY+ PE +L+E LT I++Y L
Sbjct: 104 TAGAAGGPFTFTHHSMSMGDALMA------LYERPEAMHELIEYLTEFILEYAKTL 153
>gnl|CDD|239423 cd03307, Mta_CmuA_like, MtaA_CmuA_like family. MtaA/CmuA, also
MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M
isozymes, are methylcobamide:Coenzyme M
methyltransferases, which play a role in metabolic
pathways of methane formation from various substrates,
such as methylated amines and methanol. Coenzyme M,
2-mercaptoethylsulfonate or CoM, is methylated during
methanogenesis in a reaction catalyzed by three
proteins. A methyltransferase methylates the corrinoid
cofactor, which is bound to a second polypeptide, a
corrinoid protein. The methylated corrinoid protein then
serves as a substrate for MT2-A and related enzymes,
which methylate CoM.
Length = 326
Score = 54.6 bits (132), Expect = 6e-09
Identities = 49/190 (25%), Positives = 79/190 (41%), Gaps = 29/190 (15%)
Query: 22 RGEEVDKIPIW---------IMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITLQPIR 72
G+ VD++P+ +M G Y PE + D E A++
Sbjct: 5 NGQPVDRVPVICPTQTGTVELMEATGAYWPE-----AHSD-------AEKMADLAAAGHE 52
Query: 73 RFNLDASIIFSDILVIPQALGMVVEM-KPAVGP-VLPEPLVIPEDIKKLKTSVDVYKELN 130
+A + + V +ALG V+ + P V P ED++KL +
Sbjct: 53 VAGFEAVRVPFCMTVEAEALGCEVDWGTKDIQPSVTSHPFKKLEDVEKLPDDFLERGRIP 112
Query: 131 YVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLL 190
V EAI + + K +VP+IG P +L S++ G + K WL K PE+ ++ L
Sbjct: 113 TVLEAIKILKEKYGEEVPVIGGMTGPASLASHLA---GVENFLK---WLIKKPEKVREFL 166
Query: 191 EILTNVIVDY 200
E LT ++Y
Sbjct: 167 EFLTEACIEY 176
>gnl|CDD|130530 TIGR01463, mtaA_cmuA, methyltransferase, MtaA/CmuA family. This
subfamily is closely related to, yet is distinct from,
uroporphyrinogen decarboxylase (EC 4.1.1.37). It
includes two isozymes from Methanosarcina barkeri of
methylcobalamin--coenzyme M methyltransferase. It also
includes a chloromethane utilization protein, CmuA,
which transfers the methyl group of chloromethane to a
corrinoid protein.
Length = 340
Score = 51.8 bits (124), Expect = 5e-08
Identities = 43/190 (22%), Positives = 75/190 (39%), Gaps = 29/190 (15%)
Query: 22 RGEEVDKIP---------IWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITLQPIR 72
G+ VD +P +MR+ G PE H + E A + +
Sbjct: 14 TGQTVDDVPPCVPTQTLTTELMRECGATWPE------AH------RDGEAMAHLAIAAYE 61
Query: 73 RFNLDASIIFSDILVIPQALGMVVEM-KPAVGPVLPEPLVI-PEDIKKLKTSVDVYKELN 130
+F +A D+ + +G ++ A V P D + + + +
Sbjct: 62 KFGGEAVRPPFDLTTEAECVGCELDYGPYAQPSVTKHPTPTNLADYRYPENYLLKPGRIP 121
Query: 131 YVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLL 190
V EAI + R + P+IG G P+TL MI G S+ +S W+ P+ +K +L
Sbjct: 122 VVLEAIKILRERYGDTHPIIGPMGGPFTLAQLMI--GVSEFLS----WISTDPDYAKAVL 175
Query: 191 EILTNVIVDY 200
E+ + ++ Y
Sbjct: 176 ELALDFVIAY 185
>gnl|CDD|235753 PRK06252, PRK06252, methylcobalamin:coenzyme M methyltransferase;
Validated.
Length = 339
Score = 43.7 bits (104), Expect = 2e-05
Identities = 51/206 (24%), Positives = 92/206 (44%), Gaps = 47/206 (22%)
Query: 16 NDRLLP--RGEEVDKIP---------IWIMRQAGRYLPEFRELRSKHDFFTICQTPELAA 64
+RLL +G+EVD++P + +M G Y PE + D PE A
Sbjct: 6 KERLLNALKGKEVDRVPVICVTQTGTVELMDITGAYWPE-----AHSD-------PEKMA 53
Query: 65 EITLQPIRRFNLDASIIFSDILVIPQALGMVVEM-----KPAV--GPV--LPEPLVIPED 115
++ + +A + + V +A+G V+M +P+V P+ E +P+D
Sbjct: 54 DLAIAGYEVAGFEAVRVPFCMTVEAEAMGCEVDMGTKDRQPSVTKYPIKKDVEYRKLPDD 113
Query: 116 -IKKLKTSVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSK 174
+++ + V EAI + + K+ +VP+I P +L S ++ G K K
Sbjct: 114 LLEEGRIPT--------VLEAIKILKEKVGEEVPIIAGLTGPISLASSLM---GPKNFLK 162
Query: 175 SKHWLYKYPEESKKLLEILTNVIVDY 200
WL K PE + + L+ +T+ ++Y
Sbjct: 163 ---WLIKKPELAHEFLDFVTDFCIEY 185
>gnl|CDD|236600 PRK09636, PRK09636, RNA polymerase sigma factor SigJ; Provisional.
Length = 293
Score = 28.3 bits (64), Expect = 2.8
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 102 VGPVLPEPLVIPED 115
VGP LPEP+V D
Sbjct: 80 VGPWLPEPVVEELD 93
>gnl|CDD|215817 pfam00248, Aldo_ket_red, Aldo/keto reductase family. This family
includes a number of K+ ion channel beta chain
regulatory domains - these are reported to have
oxidoreductase activity.
Length = 277
Score = 28.1 bits (63), Expect = 3.1
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 116 IKKLKTS-VDVY-----KELNYVFEAI-TLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGG 168
+K+L T +D+Y + E + L K EGK+ IG S + +E G
Sbjct: 91 LKRLGTDYLDLYLLHWPDPSLPIEETLEALEELKKEGKIRHIGVSNFSVEQLREALEHGK 150
Query: 169 SK 170
Sbjct: 151 VP 152
>gnl|CDD|234042 TIGR02870, spore_II_D, stage II sporulation protein D. Stage II
sporulation protein D (SpoIID) is a protein of the
endospore formation program in a number of lineages in
the Firmicutes (low-GC Gram-positive bacteria). It is
expressed in the mother cell compartment, under control
of Sigma-E. SpoIID, along with SpoIIM and SpoIIP, is one
of three major proteins involved in engulfment of the
forespore by the mother cell [Cellular processes,
Sporulation and germination].
Length = 338
Score = 27.4 bits (61), Expect = 5.3
Identities = 14/74 (18%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query: 72 RRFNLDASIIFSDILVIPQALGM-------VVEMKPAVGPVLPEPLVIPEDIKKLKTSVD 124
+R + I+ + I+++P + V E + PV +P ++K+ + ++
Sbjct: 1 KRLIIMVLILIAIIILLPAIIVAGFGDPQNVTEENEKLAPVEKKPEKGVTNLKEEEVAIK 60
Query: 125 VYKELNYVFEAITL 138
VY+ E + L
Sbjct: 61 VYRSNEDKIEKVPL 74
>gnl|CDD|227647 COG5342, COG5342, Invasion protein B, involved in pathogenesis
[General function prediction only].
Length = 181
Score = 27.0 bits (60), Expect = 5.4
Identities = 9/43 (20%), Positives = 12/43 (27%), Gaps = 6/43 (13%)
Query: 113 PEDIKKLKTSVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGA 155
E + LK F + + V L GF A
Sbjct: 137 DELLAALK------SGTTLTFTSTADQEQPVPIPVSLKGFGEA 173
>gnl|CDD|197998 smart00930, NIL, This domain is found at the C-terminus of ABC
transporter proteins involved in D-methionine transport
as well as a number of ferredoxin-like proteins. This
domain is likely to act as a substrate binding domain.
The domain has been named after a conserved sequence in
some members of the family.
Length = 76
Score = 25.5 bits (57), Expect = 6.2
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Query: 65 EITLQPI-----RRFNLDASIIFSDILVI-PQALG-MVVEM 98
E +P+ R F +D +I+ +I I G +VVE+
Sbjct: 12 ESADEPLISQLAREFGVDVNILHGNIERIQGGPFGSLVVEL 52
>gnl|CDD|217909 pfam04121, Nup84_Nup100, Nuclear pore protein 84 / 107. Nup84p
forms a complex with five proteins, of which Nup120p,
Nup85p, Sec13p, and a Sec13p homologues. This Nup84p
complex in conjunction with Sec13-type proteins is
required for correct nuclear pore biogenesis.
Length = 685
Score = 27.3 bits (61), Expect = 6.5
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 169 SKTMSKSKHWLYKYPEESKKLLEILTNVIVDYP 201
+ S W K E SK +++ N +V P
Sbjct: 570 LNSESNLPSWESKLQEFSKTTRKLIYNFLVFKP 602
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.139 0.414
Gapped
Lambda K H
0.267 0.0829 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,564,436
Number of extensions: 1122768
Number of successful extensions: 931
Number of sequences better than 10.0: 1
Number of HSP's gapped: 911
Number of HSP's successfully gapped: 30
Length of query: 214
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 121
Effective length of database: 6,812,680
Effective search space: 824334280
Effective search space used: 824334280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.5 bits)