RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10925
(214 letters)
>1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen
decarboxylase coproporphyrinogen, X-RAY crystallography,
lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1
PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A
1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A
1jpk_A 3gw0_A 2q71_A* 2q6z_A*
Length = 367
Score = 356 bits (916), Expect = e-125
Identities = 118/202 (58%), Positives = 147/202 (72%), Gaps = 2/202 (0%)
Query: 1 MSSVSEEKMTFPPLKNDRLLP--RGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQ 58
M + FP LKND L GEE D P+W MRQAGRYLPEFRE R+ DFF+ C+
Sbjct: 1 MEANGLGPQGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCR 60
Query: 59 TPELAAEITLQPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDIKK 118
+PE E+TLQP+RRF LDA+IIFS ILV+PQALGM V M P GP PEPL +D+++
Sbjct: 61 SPEACCELTLQPLRRFPLDAAIIFSGILVVPQALGMEVTMVPGKGPSFPEPLREEQDLER 120
Query: 119 LKTSVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHW 178
L+ V EL YVF+AITLTR +L G+VPLIGF+GAPWTLM+YM+EGGGS TM+++K W
Sbjct: 121 LRDPEVVASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRW 180
Query: 179 LYKYPEESKKLLEILTNVIVDY 200
LY+ P+ S +LL ILT+ +V Y
Sbjct: 181 LYQRPQASHQLLRILTDALVPY 202
>2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel,
eight parallel beta strands surrounded by eight alpha
helices, lyase; 2.30A {Bacillus subtilis}
Length = 359
Score = 338 bits (869), Expect = e-118
Identities = 79/194 (40%), Positives = 121/194 (62%), Gaps = 4/194 (2%)
Query: 9 MTFPPLKNDRLLP--RGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEI 66
M+ N+ L RGE+ D P+W MRQAGR PE+R+L+ K+ F I PEL A +
Sbjct: 7 MSKRETFNETFLKAARGEKADHTPVWYMRQAGRSQPEYRKLKEKYGLFEITHQPELCAYV 66
Query: 67 TLQPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDIKKLKTSVDVY 126
T P+ ++ +DA+I++ DI+ ++G+ VE+K +GPV+ +P+ DI+KL +D
Sbjct: 67 TRLPVEQYGVDAAILYKDIMTPLPSIGVDVEIKNGIGPVIDQPIRSLADIEKLGQ-IDPE 125
Query: 127 KELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEES 186
+++ YV E I L ++ VPLIGFSGAP+TL SYM EGG SK +K+K ++Y P+
Sbjct: 126 QDVPYVLETIKLLVNEQ-LNVPLIGFSGAPFTLASYMTEGGPSKNYNKTKAFMYSMPDAW 184
Query: 187 KKLLEILTNVIVDY 200
L+ L ++I+ Y
Sbjct: 185 NLLMSKLADMIIVY 198
>3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel,
cytoplasm, lyase, porphyrin biosynthesis; 2.80A
{Shigella flexneri}
Length = 354
Score = 336 bits (864), Expect = e-117
Identities = 88/192 (45%), Positives = 122/192 (63%), Gaps = 4/192 (2%)
Query: 12 PPLKNDRLLP--RGEEVDKIPIWIMRQAGRYLPEFRELRSKH-DFFTICQTPELAAEITL 68
LKNDR L + VD P+W+MRQAGRYLPE++ R++ DF ++C+ ELA E+TL
Sbjct: 2 TELKNDRYLRALLRQPVDVTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNAELACEVTL 61
Query: 69 QPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKE 128
QP+RR+ LDA+I+FSDIL +P A+G+ + + GP P+ D+ KL D E
Sbjct: 62 QPLRRYPLDAAILFSDILTVPDAMGLGLYFEAGEGPRFTSPVTCKADVDKLPI-PDPEDE 120
Query: 129 LNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKK 188
L YV A+ RH+L+G+VPLIGFSG+PWTL +YM+EGG SK + K +Y P+
Sbjct: 121 LGYVMNAVRTIRHELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADPQALHA 180
Query: 189 LLEILTNVIVDY 200
LL+ L + Y
Sbjct: 181 LLDKLAKSVTLY 192
>1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial
enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana
tabacum} SCOP: c.1.22.1
Length = 353
Score = 332 bits (854), Expect = e-115
Identities = 66/196 (33%), Positives = 107/196 (54%), Gaps = 4/196 (2%)
Query: 8 KMTFPPLKNDRLLP--RGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFF-TICQTPELAA 64
+ LL RG+EV++ P+W+MRQAGRY+ ++ L K+ F + +L
Sbjct: 4 EPKAINATQPLLLDAVRGKEVERPPVWLMRQAGRYMKSYQLLCEKYPLFRDRSENVDLVV 63
Query: 65 EITLQPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDIKKLKTSVD 124
EI+LQP + F D I+FSDIL + + ++ GPV+ +PL D++K++
Sbjct: 64 EISLQPWKVFRPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPLRTAADVEKVRE-FI 122
Query: 125 VYKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPE 184
K + YV EA+T+ R ++ + ++GF GAP+TL SY++EGG SK +K K + P+
Sbjct: 123 PEKSVPYVGEALTILRKEVNNQAAVLGFVGAPFTLASYVVEGGSSKNFTKIKRLAFAEPK 182
Query: 185 ESKKLLEILTNVIVDY 200
LL+ + Y
Sbjct: 183 VLHALLQKFATSMAKY 198
>4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme
biosynthesis, structural GENO niaid; 1.65A {Burkholderia
thailandensis}
Length = 368
Score = 331 bits (850), Expect = e-115
Identities = 80/199 (40%), Positives = 109/199 (54%), Gaps = 9/199 (4%)
Query: 10 TFPPLKNDRLLP--RGEEVDKIPIWIMRQAGRYLPEFRELRSKH-DFFTICQTPELAAEI 66
L ND L E D PIW+MRQAGRYLPE+ R++ F + + P+ A E+
Sbjct: 5 MAQTLINDTFLRALLREPTDYTPIWLMRQAGRYLPEYNATRARAGSFLGLAKHPDYATEV 64
Query: 67 TLQPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDIKKLKTSVDVY 126
TLQP+ RF LDA+I+FSDIL IP A+G+ ++ GP P+ D+ KL D+
Sbjct: 65 TLQPLERFPLDAAILFSDILTIPDAMGLGLDFAAGEGPKFAHPVRTEADVAKLAV-PDIG 123
Query: 127 KELNYVFEAITLTRHKL-----EGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYK 181
L YV +A+ R L +VPLIGFSG+PWTL YM+EGGGS K Y
Sbjct: 124 ATLGYVTDAVREIRRALTDGEGRQRVPLIGFSGSPWTLACYMVEGGGSDDFRTVKSMAYA 183
Query: 182 YPEESKKLLEILTNVIVDY 200
P+ ++L++ + Y
Sbjct: 184 RPDLMHRILDVNAQAVAAY 202
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY
diffraction, structural genomics, NPPSFA; 1.90A {Aquifex
aeolicus}
Length = 338
Score = 309 bits (794), Expect = e-106
Identities = 79/190 (41%), Positives = 122/190 (64%), Gaps = 10/190 (5%)
Query: 14 LKNDRLLP--RGEEVDKIPIWIMRQAGRYLPEFRELRSK-HDFFTICQTPELAAEITLQP 70
KND LL RGE + + P+W+MRQAGRY+PE+R++R++ +F +C+ +LA EI+L P
Sbjct: 2 PKNDLLLRSLRGEPIGRFPVWLMRQAGRYMPEYRKIRNRVKNFLELCKNVDLATEISLLP 61
Query: 71 IRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKELN 130
++ +DA IIFSDILV + LG+ VE GP L + LK +
Sbjct: 62 LKILGVDAIIIFSDILVPLEPLGVKVEFVEGEGPKLSWSG----KVSDLK--KYDPSQNA 115
Query: 131 YVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLL 190
YV+E I + + + +VP+IGF+GAP+TL+SY+IEGG SK +K ++++ P+E K+L+
Sbjct: 116 YVYEIIKRVK-EAQDEVPVIGFAGAPFTLLSYLIEGGASKDFKSTKLFMWENPKEYKRLM 174
Query: 191 EILTNVIVDY 200
+ILT ++ Y
Sbjct: 175 DILTETVLAY 184
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.6 bits (94), Expect = 2e-04
Identities = 33/219 (15%), Positives = 69/219 (31%), Gaps = 70/219 (31%)
Query: 24 EEVDKI---P---------IWIMRQAG-RYLPEFRE--LRSKHDFF-----TICQTPELA 63
EE+D I W + + +F E LR + F T + P +
Sbjct: 49 EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM- 107
Query: 64 AEITLQPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDIKKLKTSV 123
R + +++D V + + KL+ ++
Sbjct: 108 ------MTRMYIEQRDRLYNDNQVFA-----------------KYNVSRLQPYLKLRQAL 144
Query: 124 DVYKELNYVFEAITLTRHKLEGKVPLIGFSGAPW----TLMSYMIEGGGSKTMSKSKHWL 179
+ V ++G ++G G W +SY ++ M WL
Sbjct: 145 LELRPAKNVL---------IDG---VLGS-GKTWVALDVCLSYKVQ----CKMDFKIFWL 187
Query: 180 -YKYPEESKKLLEILTNVIV----DYPTRLHYFPSYRIR 213
K + +LE+L ++ ++ +R + + ++R
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.057
Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 65/177 (36%)
Query: 40 YLPEFREL--RSKH---DFFTICQTPELAAEITLQPIRRFNLDASIIFSDILVIPQALGM 94
Y E R+L D + +AE TL + R LDA +F+ L I + L
Sbjct: 169 YFEELRDLYQTYHVLVGDLI------KFSAE-TLSELIRTTLDAEKVFTQGLNILEWL-- 219
Query: 95 VVEMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKELNYV---FEAITLTR--H-----KLE 144
P+ P +D Y L + I + + H KL
Sbjct: 220 ---ENPSNTP--------DKD----------Y--LLSIPISCPLIGVIQLAHYVVTAKLL 256
Query: 145 GKVP------LIGFSGAPWTLMSYMIEGGGSKTMSKSKHW--LYKYPEESKKLLEIL 193
G P L G +G L++ + ++++ W + +K + +L
Sbjct: 257 GFTPGELRSYLKGATGHSQGLVT-------AVAIAETDSWESFF---VSVRKAITVL 303
>3ahy_A Beta-glucosidase; cellulases, glycosyl hydrolase, manganese
enhancement, hydro; 1.63A {Trichoderma reesei}
Length = 473
Score = 32.6 bits (75), Expect = 0.080
Identities = 18/99 (18%), Positives = 30/99 (30%), Gaps = 8/99 (8%)
Query: 97 EMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAP 156
M+ +G LP PE+ + S D Y +N+ RH+
Sbjct: 273 SMRKQLGDRLPT--FTPEERALVHGSNDFYG-MNHYTS--NYIRHRSSPASADDTVGNVD 327
Query: 157 WTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTN 195
+ G +T S WL + L ++
Sbjct: 328 VLFTNKQGNCIGPETQS---PWLRPCAAGFRDFLVWISK 363
>1e4i_A Beta-glucosidase; hydrolase, family 1 glycosyl hydrolase, covalent
enzyme-GLYC intermediate, alpha/beta barrel; HET: G2F
NFG; 2.00A {Bacillus polymyxa} SCOP: c.1.8.4 PDB: 1tr1_A
1bgg_A* 1bga_A 1uyq_A*
Length = 447
Score = 31.3 bits (72), Expect = 0.20
Identities = 4/35 (11%), Positives = 11/35 (31%), Gaps = 1/35 (2%)
Query: 97 EMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKELNY 131
+ + D+ + +D+ +NY
Sbjct: 261 FLVDWFAEQGATVPIQDGDMDIIGEPIDMIG-INY 294
>3ta9_A Glycoside hydrolase family 1; TIM barrel, glucosidase; 3.00A
{Halothermothrix orenii}
Length = 458
Score = 31.3 bits (72), Expect = 0.22
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 97 EMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKELNY 131
E+ L P D+ + +D +NY
Sbjct: 269 ELHHIYEQNLGAFTTQPGDMDIISRDIDFLG-INY 302
>2jf7_A Strictosidine-O-beta-D-glucosidase; alkaloid, hydrolase; 2.48A
{Rauvolfia serpentina} PDB: 2jf6_A
Length = 532
Score = 30.6 bits (70), Expect = 0.35
Identities = 18/101 (17%), Positives = 31/101 (30%), Gaps = 10/101 (9%)
Query: 97 EMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAP 156
M+ V LP+ +D +KLK D +NY T + ++ + +
Sbjct: 313 SMRELVKGRLPK--FSADDSEKLKGCYDFIG-MNYYTA--TYVTNAVKSNSEKLSYETDD 367
Query: 157 WTLMSYMIEG--GGSKTMSKSKHWLYKYPEESKKLLEILTN 195
++ G W + P KLL
Sbjct: 368 QVTKTFERNQKPIGHALYG---GWQHVVPWGLYKLLVYTKE 405
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.35
Identities = 5/13 (38%), Positives = 10/13 (76%)
Query: 114 EDIKKLKTSVDVY 126
+ +KKL+ S+ +Y
Sbjct: 20 QALKKLQASLKLY 32
>3ptm_A Beta-glucosidase OS4BGlu12; beta-alpha barrel, glycosidase,
hydrolase; HET: G2F; 2.40A {Oryza sativa} PDB: 3ptk_A*
3ptq_A*
Length = 505
Score = 29.9 bits (68), Expect = 0.62
Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 10/101 (9%)
Query: 97 EMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAP 156
M+ VG LP+ E K +K + D LNY + ++
Sbjct: 309 SMRGLVGNRLPQ--FTKEQSKLVKGAFDFIG-LNYYTA--NYADNLPPSNGLNNSYTTDS 363
Query: 157 WTLMSYMIEG--GGSKTMSKSKHWLYKYPEESKKLLEILTN 195
++ + G G + S WLY YP+ + LL +
Sbjct: 364 RANLTGVRNGIPIGPQAASP---WLYVYPQGFRDLLLYVKE 401
>1cbg_A Cyanogenic beta-glucosidase; hydrolase (O-glycosyl); 2.15A
{Trifolium repens} SCOP: c.1.8.4
Length = 490
Score = 29.8 bits (68), Expect = 0.75
Identities = 24/99 (24%), Positives = 35/99 (35%), Gaps = 6/99 (6%)
Query: 97 EMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAP 156
M+ V LP+ E+ K+L S D LNY ++ P I
Sbjct: 294 SMRYLVRKRLPK--FSTEESKELTGSFDFLG-LNYYSSYYAAKAPRIPNARPAIQTDSLI 350
Query: 157 WTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTN 195
+ + G S WL YP+ +KLL + N
Sbjct: 351 NATFEHNGKPLGPMAAS---SWLCIYPQGIRKLLLYVKN 386
>2dga_A Beta-glucosidase; alpha/beta barrel, hydrolase; 1.80A {Triticum
aestivum} PDB: 3aiq_A* 3air_A* 3ais_A* 3aiu_A 3aiv_A*
3aiw_A*
Length = 565
Score = 29.5 bits (67), Expect = 0.86
Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 6/100 (6%)
Query: 97 EMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAP 156
M+ +G LP E+ +KL +S D+ LNY ++H +
Sbjct: 347 SMRSLIGDRLPM--FTKEEQEKLASSCDIMG-LNYYTS--RFSKHVDMSPDFTPTLNTDD 401
Query: 157 WTLMSYMIEGGGSKTMSKSK-HWLYKYPEESKKLLEILTN 195
S G+ + +W+Y YP+ LL I+
Sbjct: 402 AYASSETTGSDGNDIGPITGTYWIYMYPKGLTDLLLIMKE 441
>3f5l_A Beta-glucosidase; beta-alpha-barrels, glycosidase, hydrolase; HET:
LB2 MES; 1.37A {Oryza sativa japonica group} PDB:
3aht_A* 3ahv_A* 3f5i_A* 3f5j_A* 3f5k_A* 3f4v_A* 2rgm_A*
2rgl_A* 3scu_A* 3scn_A* 3sco_A* 3sct_A* 3scv_A* 3scw_A*
Length = 481
Score = 29.0 bits (66), Expect = 1.0
Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 10/101 (9%)
Query: 97 EMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAP 156
M+ V LP+ PE + +K S D +N + + + + +S
Sbjct: 288 IMQDLVKDRLPK--FTPEQARLVKGSADYIG-INQYTA--SYMKGQQLMQQTPTSYSADW 342
Query: 157 WTLMSYMIEG--GGSKTMSKSKHWLYKYPEESKKLLEILTN 195
+ G G + S WLY P + +
Sbjct: 343 QVTYVFAKNGKPIGPQANSN---WLYIVPWGMYGCVNYIKQ 380
>1v02_A Dhurrinase, dhurrinase-1; beta-glucosidase, dhurrin hydrolysis,
PEST defense, family GH1, hydrolase; 1.9A {Sorghum
bicolor} SCOP: c.1.8.4 PDB: 1v02_E 1v03_A*
Length = 565
Score = 29.1 bits (66), Expect = 1.2
Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 6/100 (6%)
Query: 97 EMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAP 156
M+ + +P ++ +KL S D+ +NY T ++H +
Sbjct: 350 SMRVSARDRVPY--FKEKEQEKLVGSYDMIG-INYYTS--TFSKHIDLSPNNSPVLNTDD 404
Query: 157 WTLMSYMIEGGGSKTMSKSK-HWLYKYPEESKKLLEILTN 195
G+ + W+ YP+ +L + N
Sbjct: 405 AYASQETKGPDGNAIGPPTGNAWINMYPKGLHDILMTMKN 444
>4a3y_A Raucaffricine-O-beta-D-glucosidase; hydrolase, alkaloid; 2.15A
{Rauvolfia serpentina} PDB: 3u5u_A 3u57_A 3u5y_A*
Length = 540
Score = 28.8 bits (65), Expect = 1.4
Identities = 28/100 (28%), Positives = 37/100 (37%), Gaps = 6/100 (6%)
Query: 97 EMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAP 156
MK VG LP+ PE K LK S D LNY + + FS
Sbjct: 315 SMKKFVGSRLPK--FSPEQSKMLKGSYDFVG-LNYYTA--SYVTNASTNSSGSNNFSYNT 369
Query: 157 WTLMSYMIEGGGSKTMSKSK-HWLYKYPEESKKLLEILTN 195
++Y + G +S WL YPE +K+L
Sbjct: 370 DIHVTYETDRNGVPIGPQSGSDWLLIYPEGIRKILVYTKK 409
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles,
endocytosis, SELF- assembly, alpha-alpha superhelix;
2.60A {Bos taurus} SCOP: a.118.1.3
Length = 449
Score = 28.7 bits (64), Expect = 1.6
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 84 DILVIPQALGMVV-EMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKELNYVFEAITLTRHK 142
+ ++ L V +V L + ED + L+TS+D Y + + A L +H+
Sbjct: 371 QLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHE 430
Query: 143 L 143
L
Sbjct: 431 L 431
>2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, PORP
gingivalis, knot, structural genomics, PSI-2, protein
struc initiative; HET: MSE; 1.85A {Porphyromonas
gingivalis}
Length = 257
Score = 28.4 bits (64), Expect = 1.6
Identities = 13/89 (14%), Positives = 28/89 (31%), Gaps = 7/89 (7%)
Query: 35 RQAGRYLPE----FRELRSKHDFFTICQTPELAAEIT-LQPIRRFNLDASIIFSDI--LV 87
+ + E E+ + + T + ++ L S F I
Sbjct: 23 LREQAFAVEGPKLVGEMLPFYRCRMLVGTAAMLRAVSTPHDAEVVELPESFDFKRISTQT 82
Query: 88 IPQALGMVVEMKPAVGPVLPEPLVIPEDI 116
PQ L V ++ PV+ ++ + +
Sbjct: 83 TPQPLMAVFDLPAEPEPVVEGLTLLLDGV 111
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL;
1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A*
1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A*
2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B*
3b9j_A* 1fiq_A*
Length = 1332
Score = 28.7 bits (64), Expect = 1.9
Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 148 PLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYPTRLHYF 207
P+ SG T++S G +T+ + Y + EIL ++ + Y +F
Sbjct: 363 PVFMASGTKLTIVS----RGTRRTVPMDHTFFPSYRKTLLGPEEILLSIEIPYSREDEFF 418
Query: 208 PSYRI 212
+++
Sbjct: 419 SAFKQ 423
>2o9p_A Beta-glucosidase B; family 1 glycoside hydrolase; 2.10A
{Paenibacillus polymyxa} PDB: 2o9t_A* 2z1s_A* 2jie_A*
2o9r_A*
Length = 454
Score = 28.2 bits (64), Expect = 2.2
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 97 EMKPAVGPVLPE-PLVIPEDIKKLKTSVDVYKELNY 131
+M G L V P D++ ++ D +NY
Sbjct: 269 DMVEWYGTYLNGLDFVQPGDMELIQQPGDFLG-INY 303
>2v6e_A Protelemorase; hairpin telomere, hydrolase, resolvase,
protelomerase, DNA distortion; 3.20A {Klebsiella phage
PHIKO2}
Length = 558
Score = 27.7 bits (60), Expect = 3.1
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Query: 51 HDFFTICQTPELAAEITLQPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPV-LPEP 109
H+ + + +IT +R FN +I + ALG V
Sbjct: 491 HETVKQLVEQDPSIKITNSTLRPFNFSTRLIPRYLEFAADALGQFVGENGQWQLKDEAPA 550
Query: 110 LVIPED 115
+V+P++
Sbjct: 551 IVLPDE 556
>2e3z_A Beta-glucosidase; TIM barrel, glycoside hydrolase family 1, CLAN
GH-A, structural genomics, NPPSFA; 1.50A {Phanerochaete
chrysosporium} PDB: 2e40_A*
Length = 465
Score = 27.9 bits (63), Expect = 3.1
Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 12/99 (12%)
Query: 97 EMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAP 156
+K +G LPE PE+I+ +K S D + LN L + ++
Sbjct: 272 RIKKILGDRLPE--FTPEEIELVKGSSDFFG-LNTYTT--HLVQDGGSDELA----GFVK 322
Query: 157 WTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTN 195
G+++ WL Y + LL L
Sbjct: 323 TGHTRADGTQLGTQSDM---GWLQTYGPGFRWLLNYLWK 358
>1qox_A Beta-glucosidase; hydrolase, cellulose degradation; 2.7A {Bacillus
circulans} SCOP: c.1.8.4
Length = 449
Score = 27.4 bits (62), Expect = 3.3
Identities = 6/35 (17%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 97 EMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKELNY 131
M + +P ++ D++ + +D +NY
Sbjct: 261 FMLDWYENLGYKPPIVDGDMELIHQPIDFIG-INY 294
>2j78_A Beta-glucosidase A; family 1, hydrolase, inhibitor, glycosidase,
polysaccharide degradation, transition state mimic,
carbohydrate metabolism; HET: GOX; 1.65A {Thermotoga
maritima} SCOP: c.1.8.4 PDB: 1oif_A* 1oim_A* 1oin_A*
1od0_A* 1w3j_A* 1uz1_A* 2cbv_A* 2ces_A* 2cet_A* 2j75_A*
2j77_A* 2cbu_A* 2j79_A* 2j7b_A* 2j7c_A* 2j7d_A* 2j7e_A*
2j7f_A* 2j7g_A* 2j7h_A* ...
Length = 468
Score = 27.5 bits (62), Expect = 3.5
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 97 EMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKELNY 131
+ LPE +D+ +++ +D LNY
Sbjct: 285 LVLEFAREYLPE--NYKDDMSEIQEKIDFVG-LNY 316
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase,
protease; 1.50A {Synechocystis SP}
Length = 291
Score = 27.4 bits (60), Expect = 3.6
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 138 LTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVI 197
+ + G++ L G S + +MI GG S W + + L I+ ++
Sbjct: 137 IRQRVHNGEISLAGTSAGAAVMGHHMIAGGSSGE------WPNRALVDMAVGLGIVPEIV 190
Query: 198 VD 199
VD
Sbjct: 191 VD 192
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller,
endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP:
i.23.1.1 PDB: 1xi5_A 3iyv_A
Length = 1630
Score = 27.7 bits (61), Expect = 3.7
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 86 LVIPQALGMVVEMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKELNYVFEAITLTRHKL 143
LV P + +V L + ED + L+TS+D Y + + A L +H+L
Sbjct: 1447 LVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHEL 1504
>1v08_A Beta-glucosidase; glycoside hydrolase, dimboa-glucoside, inhibitor,
PEST defense, family GH1, hydrolase, chloroplast,
transit peptide, 3D-structure; HET: NTZ; 1.9A {Zea mays}
SCOP: c.1.8.4 PDB: 1e4l_A* 1e4n_A* 1e56_A* 1e55_A*
1e1e_A 1e1f_A* 1h49_A* 1hxj_A
Length = 512
Score = 27.5 bits (62), Expect = 3.8
Identities = 23/99 (23%), Positives = 35/99 (35%), Gaps = 4/99 (4%)
Query: 97 EMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAP 156
M+ LP E +KL S ++ LNY + P++ A
Sbjct: 301 SMRSLARERLPF--FKDEQKEKLAGSYNMLG-LNYYTSRFSKNIDISPNYSPVLNTDDAY 357
Query: 157 WTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTN 195
+ +G + W+Y YPE K LL I+ N
Sbjct: 358 ASQEVNGPDGKPIGPPMGNP-WIYMYPEGLKDLLMIMKN 395
>3ahx_A Beta-glucosidase A; cellulases, glycosyl hydrolase, manganese
enhancement, hydro; HET: 7PE; 1.90A {Clostridium
cellulovorans}
Length = 453
Score = 27.5 bits (62), Expect = 4.1
Identities = 6/35 (17%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 97 EMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKELNY 131
+M P + E ++ + D +NY
Sbjct: 262 DMIKIFSDTNIMPELPKELFTEVFETSDFLG-INY 295
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter,
structural genomics, APC87322.1, PSI-2, protein
structure initiative; 1.50A {Enterococcus faecalis}
SCOP: d.58.18.13
Length = 100
Score = 26.2 bits (58), Expect = 4.3
Identities = 6/31 (19%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 71 IRRFNLDASIIFSDILVI-PQALG-MVVEMK 99
++ + ++ SII +I A+G + +++
Sbjct: 44 VQEYQVEVSIIQGNIQQTKQGAVGSLYIQLL 74
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter,
NIL domain, structur genomics, PSI-2, protein structure
initiative; 2.15A {Staphylococcus aureus subsp} SCOP:
d.58.18.13
Length = 98
Score = 25.8 bits (57), Expect = 4.5
Identities = 7/42 (16%), Positives = 19/42 (45%), Gaps = 7/42 (16%)
Query: 65 EITLQPI-----RRFNLDASIIFSDILVIP-QALG-MVVEMK 99
T +PI +++ +I+ ++I +G +V+ +
Sbjct: 30 STTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIP 71
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake,
regulation, amino-acid transport, ATP-BIN hydrolase,
inner membrane, membrane; 2.10A {Escherichia coli} SCOP:
d.58.18.13
Length = 106
Score = 25.9 bits (57), Expect = 4.7
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 9/64 (14%)
Query: 71 IRRFNLDASIIFSDILVI-PQALG-MVVEMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKE 128
RRFN++ +II + + G M+ EM I L+ +
Sbjct: 42 ARRFNVNNNIISAQMDYAGGVKFGIMLTEMH-------GTQQDTQAAIAWLQEHHVKVEV 94
Query: 129 LNYV 132
L YV
Sbjct: 95 LGYV 98
>3gnp_A OS03G0212800 protein; beta-alpha barrel, glycosidase, hydrolase;
HET: SOG; 1.80A {Oryza sativa subsp} PDB: 3gno_A*
3gnr_A*
Length = 488
Score = 26.7 bits (60), Expect = 6.6
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 97 EMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKELNY 131
M+ VG LP ++ +K ++D +N+
Sbjct: 289 TMRARVGERLPR--FTADEAAVVKGALDFVG-INH 320
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 26.5 bits (59), Expect = 6.9
Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 14/75 (18%)
Query: 65 EITLQPI-----RRFNLDASIIFSDILVIP-QALG-MVVEMKPAVGPVLPEPLVIPEDIK 117
+ P+ RRFN++ +II + + G M+ EM I
Sbjct: 299 QSVDAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMH-------GTQQDTQAAIA 351
Query: 118 KLKTSVDVYKELNYV 132
L+ + L YV
Sbjct: 352 WLQEHHVKVEVLGYV 366
>2g5d_A GNA33; hydrolase, beta barrel; 1.95A {Neisseria gonorrhoeae fa
1090} SCOP: b.52.1.4 PDB: 2g6g_A
Length = 422
Score = 26.4 bits (57), Expect = 7.4
Identities = 9/46 (19%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 151 GFSGAPWTLM-SYMIEGG----GSKTMSKSKHWLYKYPEESKKLLE 191
+ P+ + YM + G G +M K ++ + P+ ++L
Sbjct: 262 DKNEHPYVSIGRYMADKGYLKLGQTSMQGIKAYMRQNPQRLAEVLG 307
>3vii_A Beta-glucosidase; cellulases, glycosyl hydrolase, hydrolase; HET:
BTB; 0.97A {Neotermes koshunensis} PDB: 3ahz_A* 3vif_A*
3vih_A 3vig_A* 3vim_A* 3ai0_A* 3vin_A* 3vio_A* 3vip_A*
3vij_A* 3vik_A* 3vil_A*
Length = 487
Score = 26.4 bits (59), Expect = 7.5
Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 12/104 (11%)
Query: 92 LGMVVEMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKELNYVFEAITLTRHKLEGKVPLIG 151
+ + LP+ E+++ ++ + D +N+ L + +EG P
Sbjct: 281 VSRNSADEGYTDSRLPQ--FTAEEVEYIRGTHDFLG-INFYTA--LLGKSGVEGYEP--- 332
Query: 152 FSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTN 195
S + + + + S WL P +K L + N
Sbjct: 333 -SRYRDSGVILTQDAAWPISAS---SWLKVVPWGFRKELNWIKN 372
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus} PDB: 3lvh_A
Length = 624
Score = 26.5 bits (58), Expect = 7.6
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 84 DILVIPQALGMVVE-MKPAVGPVLPEPLVIPEDIKKLKTSVDVYKELNYVFEAITLTRHK 142
+ ++ L V +V L + ED + L+TS+D Y + + A L +H+
Sbjct: 393 QLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHE 452
Query: 143 L 143
L
Sbjct: 453 L 453
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; 1.71A
{Vibrio parahaemolyticus} SCOP: d.58.18.13
Length = 101
Score = 25.5 bits (56), Expect = 8.0
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 9/64 (14%)
Query: 71 IRRFNLDASIIFSDILVI-PQALG-MVVEMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKE 128
R++N+D SI+ SD+ G MV E+ I+ L+ + +
Sbjct: 44 SRKYNIDVSILSSDLDYAGGVKFGMMVAELF-------GNEQDDSAAIEYLRENNVKVEV 96
Query: 129 LNYV 132
L YV
Sbjct: 97 LGYV 100
>1e4m_M Myrosinase MA1; hydrolase, family 1 glycosyl hydrolase,
glucosinolate, TIM B; HET: NAG FUC BMA MAN; 1.2A
{Sinapis alba} SCOP: c.1.8.4 PDB: 1e6q_M* 1e6s_M*
1e6x_M* 1e70_M* 1e71_M* 1e72_M* 1e73_M* 1w9b_M* 1w9d_M*
2wxd_M* 1dwa_M* 1dwf_M* 1dwg_M* 1dwh_M* 1dwi_M* 1dwj_M*
1myr_A*
Length = 501
Score = 26.4 bits (59), Expect = 8.5
Identities = 21/104 (20%), Positives = 32/104 (30%), Gaps = 8/104 (7%)
Query: 97 EMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKELNY-----VFEAITLTRHKLEGKVPLIG 151
M VG LP PE+ +K S D LNY + + G
Sbjct: 298 IMIDTVGERLPS--FSPEESNLVKGSYDFLG-LNYYFTQYAQPSPNPVNSTNHTAMMDAG 354
Query: 152 FSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTN 195
+ I K + S +Y YP+ +++ N
Sbjct: 355 AKLTYINASGHYIGPLFEKDKADSTDNIYYYPKGIYSVMDYFKN 398
>2x3m_A Hypothetical protein ORF239; unknown function; 1.45A {Pyrobaculum
spherical virus}
Length = 239
Score = 26.0 bits (56), Expect = 9.7
Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 12/145 (8%)
Query: 21 PRGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTP---ELAAEITLQPIRRFNLD 77
P+G E ++I +W +A + + E RE+ + D+ +TP E E R + +
Sbjct: 44 PKGSEPEEIRVWAEEKARKAVEEGREVTNWADWIMGWRTPNASEKKMEFMYWYTRTYLEE 103
Query: 78 ASIIFSDILVIPQ------ALGMVVEMKPAVGP-VLPEPLVIPEDIKKLKTSVDVYKELN 130
A I DI A G + + P ++ PE + + D+ + ++
Sbjct: 104 AKDIRPDIADALARGMAGLAFGRTDWVASMLDPQIMRHIYTDPEVARIYSETRDMLRRVS 163
Query: 131 YVFEAITLTRHKLEGKVPLIGFSGA 155
+ I+LT +L +I + A
Sbjct: 164 DYY--ISLTTMELGKVADIIAEAKA 186
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.414
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,477,325
Number of extensions: 210002
Number of successful extensions: 445
Number of sequences better than 10.0: 1
Number of HSP's gapped: 426
Number of HSP's successfully gapped: 54
Length of query: 214
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 124
Effective length of database: 4,188,903
Effective search space: 519423972
Effective search space used: 519423972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (24.9 bits)