RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10925
(214 letters)
>d1r3sa_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Human
(Homo sapiens) [TaxId: 9606]}
Length = 356
Score = 181 bits (460), Expect = 7e-57
Identities = 117/192 (60%), Positives = 145/192 (75%), Gaps = 2/192 (1%)
Query: 11 FPPLKNDRLLP--RGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITL 68
FP LKND L GEE D P+W MRQAGRYLPEFRE R+ DFF+ C++PE E+TL
Sbjct: 1 FPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCRSPEACCELTL 60
Query: 69 QPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKE 128
QP+RRF LDA+IIFS ILV+PQALGM V M P GP PEPL +D+++L+ V E
Sbjct: 61 QPLRRFPLDAAIIFSGILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASE 120
Query: 129 LNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKK 188
L YVF+AITLTR +L G+VPLIGF+GAPWTLM+YM+EGGGS TM+++K WLY+ P+ S +
Sbjct: 121 LGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQASHQ 180
Query: 189 LLEILTNVIVDY 200
LL ILT+ +V Y
Sbjct: 181 LLRILTDALVPY 192
>d1j93a_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Tobacco
(Nicotiana tabacum), UROD-III [TaxId: 4097]}
Length = 343
Score = 138 bits (349), Expect = 2e-40
Identities = 61/180 (33%), Positives = 99/180 (55%), Gaps = 2/180 (1%)
Query: 22 RGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFT-ICQTPELAAEITLQPIRRFNLDASI 80
RG+EV++ P+W+MRQAGRY+ ++ L K+ F + +L EI+LQP + F D I
Sbjct: 10 RGKEVERPPVWLMRQAGRYMKSYQLLCEKYPLFRDRSENVDLVVEISLQPWKVFRPDGVI 69
Query: 81 IFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKELNYVFEAITLTR 140
+FSDIL + + ++ GPV+ +P + + K + YV EA+T+ R
Sbjct: 70 LFSDILTPLSGMNIPFDIIKGKGPVIFDP-LRTAADVEKVREFIPEKSVPYVGEALTILR 128
Query: 141 HKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDY 200
++ + ++GF GAP+TL SY++EGG SK +K K + P+ LL+ + Y
Sbjct: 129 KEVNNQAAVLGFVGAPFTLASYVVEGGSSKNFTKIKRLAFAEPKVLHALLQKFATSMAKY 188
>d2g5da1 b.52.1.4 (A:40-441) Membrane-bound lytic murein
transglycosylase A, MLTA {Neisseria gonorrhoeae [TaxId:
485]}
Length = 402
Score = 29.9 bits (67), Expect = 0.22
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Query: 144 EGKVPLIGF---SGAPWTLMS-YMIEGG----GSKTMSKSKHWLYKYPEESKKLLE 191
GK IG+ + P+ + YM + G G +M K ++ + P+ ++L
Sbjct: 232 SGKYIRIGYADKNEHPYVSIGRYMADKGYLKLGQTSMQGIKAYMRQNPQRLAEVLG 287
>d2qrra1 d.58.18.13 (A:2-98) Methionine import ATP-binding protein
MetN {Vibrio parahaemolyticus [TaxId: 670]}
Length = 97
Score = 25.1 bits (55), Expect = 2.8
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 9/64 (14%)
Query: 71 IRRFNLDASIIFSDILVI-PQALG-MVVEMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKE 128
R++N+D SI+ SD+ G MV E+ I+ L+ + +
Sbjct: 40 SRKYNIDVSILSSDLDYAGGVKFGMMVAELF-------GNEQDDSAAIEYLRENNVKVEV 92
Query: 129 LNYV 132
L YV
Sbjct: 93 LGYV 96
>d3dhxa1 d.58.18.13 (A:2-100) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 99
Score = 25.1 bits (55), Expect = 3.7
Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 9/66 (13%)
Query: 71 IRRFNLDASIIFSDILVI-PQALG-MVVEMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKE 128
RRFN++ +II + + G M+ EM I L+ +
Sbjct: 41 ARRFNVNNNIISAQMDYAGGVKFGIMLTEMH-------GTQQDTQAAIAWLQEHHVKVEV 93
Query: 129 LNYVFE 134
L YV E
Sbjct: 94 LGYVLE 99
>d1ei1a1 d.14.1.3 (A:221-392) DNA gyrase B {Escherichia coli [TaxId:
562]}
Length = 172
Score = 25.4 bits (55), Expect = 4.4
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 146 KVPLIGFSGAPWTLM--SYMIEGGGSKTMSKSKHWLYKYPEESKKLLE 191
KVP FS + S + + +L + P ++K ++
Sbjct: 106 KVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVG 153
>d2pnwa1 b.52.1.4 (A:5-369) Membrane-bound lytic murein
transglycosylase A, MLTA {Agrobacterium tumefaciens
[TaxId: 358]}
Length = 365
Score = 24.9 bits (54), Expect = 9.2
Identities = 9/56 (16%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Query: 144 EGKVPLIGFSGA---PWTLM-SYMIEGG----GSKTMSKSKHWLYKYPEESKKLLE 191
+G + I ++ ++ + +++ G + +M + WL +P+E +L
Sbjct: 192 DGAIKRITYAAKAGHVFSPIGRLLLDRGELDPKTISMQTIRQWLADHPDEVDGVLW 247
>d2qswa1 d.58.18.13 (A:256-345) Methionine import ATP-binding
protein MetN2 {Enterococcus faecalis [TaxId: 1351]}
Length = 90
Score = 23.5 bits (51), Expect = 9.7
Identities = 6/30 (20%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 71 IRRFNLDASIIFSDILVI-PQALG-MVVEM 98
++ + ++ SII +I A+G + +++
Sbjct: 34 VQEYQVEVSIIQGNIQQTKQGAVGSLYIQL 63
>d3ceda1 d.58.18.13 (A:247-341) Methionine import ATP-binding
protein MetN2 {Staphylococcus aureus [TaxId: 1280]}
Length = 95
Score = 23.6 bits (51), Expect = 9.8
Identities = 4/30 (13%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 71 IRRFNLDASIIFSDILVI-PQALG-MVVEM 98
+++ +I+ ++I +G +V+ +
Sbjct: 38 STAYDIKINILEANIKNTKNGTVGFLVLHI 67
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.139 0.414
Gapped
Lambda K H
0.267 0.0664 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 860,157
Number of extensions: 41651
Number of successful extensions: 83
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 12
Length of query: 214
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 132
Effective length of database: 1,281,736
Effective search space: 169189152
Effective search space used: 169189152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)