BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10926
(227 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 81/173 (46%), Gaps = 10/173 (5%)
Query: 50 MFTNPLEIVKIRLQVAGEVVAAPATKISA---------WSIVKELGFMGLYKGARACMLR 100
+ T PL+ K+RLQ+ GE T SA ++V+ G LY G A + R
Sbjct: 17 LITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQR 76
Query: 101 DVPFSAIYFPAYNHTKKRFADENGYNHPLTLLAAGCIAGIPAASLVTPADVIKTRLQVVA 160
+ F+++ Y+ K+ + + + + L AG G A ++ P DV+K R Q A
Sbjct: 77 QMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQA 136
Query: 161 RQ-GQTVYSGVVDCARKIYQEEGARAFWKGTVARMFRSSPQFGVTLVMYELFQ 212
R G Y V+ + I +EEG R WKGT + R++ LV Y+L +
Sbjct: 137 RAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIK 189
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 70/169 (41%), Gaps = 7/169 (4%)
Query: 49 VMFTNPLEIVKIRLQV---AGEVVAAPATKISAWSIVKELGFMGLYKGARACMLRDVPFS 105
V P ++VK+R Q AG +T + +I +E G GL+KG + R+ +
Sbjct: 119 VAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVN 178
Query: 106 AIYFPAYNHTKKRFADENGYNHPLTL-LAAGCIAGIPAASLVTPADVIKTRLQVVARQGQ 164
Y+ K N L + AG + +P DV+KTR A GQ
Sbjct: 179 CAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSA-LGQ 237
Query: 165 TVYSGVVDCARKIYQEEGARAFWKGTVARMFRSSPQFGVTLVMYELFQR 213
Y CA + ++EG RAF+KG + R V V YE +R
Sbjct: 238 --YHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKR 284
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 86/180 (47%), Gaps = 14/180 (7%)
Query: 44 AGFSQVMFTNPLEIVKIRLQVAGEVVAAPATK------ISAWSIVKELGFMGLYKGARAC 97
AG + + F PL+ + RL A +V A + I K G GLY+G
Sbjct: 122 AGATSLCFVYPLDFARTRL--AADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVS 179
Query: 98 MLRDVPFSAIYFPAYNHTKKRFADENGYNHPLTLLAAGCIAGIPAASLVT-PADVIKTRL 156
+ + + A YF Y+ K D + ++ + A + + A LV+ P D ++ R+
Sbjct: 180 VQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAV--AGLVSYPFDTVRRRM 237
Query: 157 QVVA-RQGQTV-YSGVVDCARKIYQEEGARAFWKGTVARMFRSSPQFGVTLVMYELFQRL 214
+ + R+G + Y+G VDC RKI ++EG +AF+KG + + R LV+Y+ ++
Sbjct: 238 MMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGG-AFVLVLYDEIKKF 296
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 13/149 (8%)
Query: 54 PLEIVKIRLQVAGEVVAAPATK------ISAWSIVKELGFMGLYKGARACMLRDVPFSAI 107
P+E VK+ LQV A K I KE GF+ ++G A ++R P A+
Sbjct: 27 PIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQAL 86
Query: 108 YFPAYNHTKKRFA-----DENGYNHPLTLLAAGCIAGIPAASLVTPADVIKTRLQVVARQ 162
F + K+ F + + + LA+G AG + V P D +TRL +
Sbjct: 87 NFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGK 146
Query: 163 G--QTVYSGVVDCARKIYQEEGARAFWKG 189
G Q ++G+ +C KI++ +G R ++G
Sbjct: 147 GAAQREFTGLGNCITKIFKSDGLRGLYQG 175
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 134 AGCIAGIPAASLVTPADVIKTRLQV--VARQ--GQTVYSGVVDCARKIYQEEGARAFWKG 189
AG +A + + V P + +K LQV ++Q + Y G++DC +I +E+G +FW+G
Sbjct: 13 AGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRG 72
Query: 190 TVARMFRSSPQFGVTLVMYELFQRLF 215
+A + R P + + ++++F
Sbjct: 73 NLANVIRYFPTQALNFAFKDKYKQIF 98
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 17/124 (13%)
Query: 69 VAAPATKISAWSIVKELGFMGL----YKGAR-ACMLRDVPFSAIYFPAYNHTKKRFADEN 123
V+ K+ W + F + Y+GA A M+ D+ + YNH D
Sbjct: 59 VSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRS----TYNHLSSWLTDAR 114
Query: 124 GYNHPLT-LLAAGCIAGIPAASLVTPADVIKTR-------LQVVARQGQTVYSGVVDCAR 175
+P T ++ G A + A VT + + L+ A+ G+ V ++ A+
Sbjct: 115 NLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAK 174
Query: 176 KIYQ 179
KIYQ
Sbjct: 175 KIYQ 178
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 17/124 (13%)
Query: 69 VAAPATKISAWSIVKELGFMGL----YKGAR-ACMLRDVPFSAIYFPAYNHTKKRFADEN 123
V+ K+ W + F + Y+GA A M+ D+ + YNH D
Sbjct: 74 VSGQKIKLQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRS----TYNHLSSWLTDAR 129
Query: 124 GYNHPLT-LLAAGCIAGIPAASLVTPADVIKTR-------LQVVARQGQTVYSGVVDCAR 175
+P T ++ G A + A VT + + L+ A+ G+ V ++ A+
Sbjct: 130 NLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAK 189
Query: 176 KIYQ 179
KIYQ
Sbjct: 190 KIYQ 193
>pdb|3NX4|A Chain A, Crystal Structure Of The Yhdh Oxidoreductase From
Salmonella Enterica In Complex With Nadp
pdb|3NX4|B Chain B, Crystal Structure Of The Yhdh Oxidoreductase From
Salmonella Enterica In Complex With Nadp
Length = 324
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 40 CFKKAGFSQVMFTNPLEIVKIRLQVAGEVVAAPATKISAWS-IVKELGFMGLYKGARACM 98
C GF+ P + +RLQ V PA + AW+ +VK+L + A
Sbjct: 240 CGLAGGFALPTTVXPFILRNVRLQGVDSVXTPPARRAEAWARLVKDLPESFYAQAATEIT 299
Query: 99 LRDVP 103
L D P
Sbjct: 300 LADAP 304
>pdb|3G9K|L Chain L, Crystal Structure Of Bacillus Anthracis Transpeptidase
Enzyme Capd
pdb|3G9K|D Chain D, Crystal Structure Of Bacillus Anthracis Transpeptidase
Enzyme Capd
pdb|3GA9|L Chain L, Crystal Structure Of Bacillus Anthracis Transpeptidase
Enzyme Capd, Crystal Form Ii
Length = 323
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 151 VIKTRLQVVARQGQTVYSGVV----DCAR--KIYQEEGARAFWKGTVAR 193
+ +L + G+ + +G D AR K Q+EGA+ F++G VAR
Sbjct: 152 IYSDKLSIFYPNGEPIETGETLIQTDLARTLKKIQKEGAKGFYEGGVAR 200
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,585,914
Number of Sequences: 62578
Number of extensions: 252407
Number of successful extensions: 684
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 670
Number of HSP's gapped (non-prelim): 13
length of query: 227
length of database: 14,973,337
effective HSP length: 95
effective length of query: 132
effective length of database: 9,028,427
effective search space: 1191752364
effective search space used: 1191752364
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)