Query psy10926
Match_columns 227
No_of_seqs 120 out of 1247
Neff 9.6
Searched_HMMs 29240
Date Fri Aug 16 22:02:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10926.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10926hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 8.3E-46 2.8E-50 304.4 4.6 216 1-219 10-290 (303)
2 1okc_A ADP, ATP carrier protei 100.0 4.8E-44 1.6E-48 293.1 7.4 212 2-215 17-297 (297)
3 2lck_A Mitochondrial uncouplin 100.0 4.5E-36 1.5E-40 246.4 9.6 176 43-218 10-195 (303)
4 1okc_A ADP, ATP carrier protei 100.0 2.9E-35 9.8E-40 241.0 9.5 174 44-217 17-203 (297)
5 3tgu_G UQCRQ, mitochondrial ub 19.7 35 0.0012 21.4 0.9 38 181-218 32-69 (81)
6 1pp9_G Ubiquinol-cytochrome C 17.0 48 0.0016 20.7 1.1 38 181-218 32-69 (81)
7 2acm_A Mucin-1; auto-catalytic 15.5 35 0.0012 19.9 0.1 20 168-187 40-59 (66)
8 3f2e_A SIRV coat protein; four 14.4 61 0.0021 20.0 1.0 33 165-197 6-42 (100)
9 2da7_A Zinc finger homeobox pr 14.1 30 0.001 21.1 -0.5 21 5-25 38-58 (71)
10 3vjj_A P9-1; 3.00A {Rice black 12.8 1.1E+02 0.0038 24.0 2.3 35 141-183 274-308 (368)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=8.3e-46 Score=304.40 Aligned_cols=216 Identities=25% Similarity=0.355 Sum_probs=184.8
Q ss_pred CCcccccccccchhhhhhhhccccCCCc----ccccceehHHHHHHH---------------------------------
Q psy10926 1 MSTPIGATAVYPIDLVKTRMQNQRTGSF----IGELMYRNSWDCFKK--------------------------------- 43 (227)
Q Consensus 1 ~a~~~~~~~~~Pld~ik~~~Q~~~~~~~----~~~~~~~~~~~~~~~--------------------------------- 43 (227)
+||+++.+++||||+||||+|++..... .....|++.+++++.
T Consensus 10 ~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye 89 (303)
T 2lck_A 10 TAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYD 89 (303)
T ss_dssp HHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHHTTTHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999999864311 011223443333322
Q ss_pred ------------------------hccchhhccCcHHHHHHHHHhcCC---CCCCCchhHHHHHHHHhhchhhccccchh
Q psy10926 44 ------------------------AGFSQVMFTNPLEIVKIRLQVAGE---VVAAPATKISAWSIVKELGFMGLYKGARA 96 (227)
Q Consensus 44 ------------------------a~~~~~~i~~Pl~~ik~~~q~~~~---~~~~~~~~~~~~~~~~~~G~~~ly~G~~~ 96 (227)
||+++.++++|+|++|+|+|++.. ...+.+.++++++++++||+++||||+.+
T Consensus 90 ~~k~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~ 169 (303)
T 2lck_A 90 SVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSP 169 (303)
T ss_dssp HHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHhcCCcCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccH
Confidence 777888999999999999999864 23478999999999999999999999999
Q ss_pred hhhcccccceeecchHHHHHHHhhccC-CCCChhHHHHHHHhhhhhhhhccccHHHHHHhhhccccCCCcccccHHHHHH
Q psy10926 97 CMLRDVPFSAIYFPAYNHTKKRFADEN-GYNHPLTLLAAGCIAGIPAASLVTPADVIKTRLQVVARQGQTVYSGVVDCAR 175 (227)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~ag~~~~~i~~P~d~ik~~~q~~~~~~~~~~~~~~~~~~ 175 (227)
++++.+++.+++|.+||.+++.+.+.. ...+....+++|++||++++++++|+|++|+|+|.+.. ..|.+++++++
T Consensus 170 ~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~---~~y~~~~~~~~ 246 (303)
T 2lck_A 170 NVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL---GQYHSAGHCAL 246 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS---SSCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc---cccCCHHHHHH
Confidence 999999999999999999999887543 34567788999999999999999999999999999753 45899999999
Q ss_pred HHHHhhccchhccccccccccccccchhHHHHHHHHHHHHhhhc
Q psy10926 176 KIYQEEGARAFWKGTVARMFRSSPQFGVTLVMYELFQRLFYIDF 219 (227)
Q Consensus 176 ~i~~~~G~~glyrG~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~ 219 (227)
+++++||++|||||+.|++++.+|..+++|.+||.+|+++.+..
T Consensus 247 ~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~~~ 290 (303)
T 2lck_A 247 TMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAY 290 (303)
T ss_dssp HHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998876544
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=4.8e-44 Score=293.15 Aligned_cols=212 Identities=27% Similarity=0.430 Sum_probs=174.5
Q ss_pred CcccccccccchhhhhhhhccccCCCc-ccccceehHHHHHHH-------------------------------------
Q psy10926 2 STPIGATAVYPIDLVKTRMQNQRTGSF-IGELMYRNSWDCFKK------------------------------------- 43 (227)
Q Consensus 2 a~~~~~~~~~Pld~ik~~~Q~~~~~~~-~~~~~~~~~~~~~~~------------------------------------- 43 (227)
||+++.+++||||+||||+|++..... .....|+|.+++++.
T Consensus 17 ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~ 96 (297)
T 1okc_A 17 AAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQ 96 (297)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999863210 111123333333322
Q ss_pred -------------------------hccchhhccCcHHHHHHHHHhcCC----CCCCCchhHHHHHHHHhhchhhccccc
Q psy10926 44 -------------------------AGFSQVMFTNPLEIVKIRLQVAGE----VVAAPATKISAWSIVKELGFMGLYKGA 94 (227)
Q Consensus 44 -------------------------a~~~~~~i~~Pl~~ik~~~q~~~~----~~~~~~~~~~~~~~~~~~G~~~ly~G~ 94 (227)
||+++.++++|+|++|+|+|++.. ...+.+.++++++++++||+++||||+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~ 176 (297)
T 1okc_A 97 IFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGF 176 (297)
T ss_dssp HHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTH
T ss_pred HhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCc
Confidence 777888999999999999999853 234789999999999999999999999
Q ss_pred hhhhhcccccceeecchHHHHHHHhhccCCCCChhHHHHHHHhhhhhhhhccccHHHHHHhhhccccC--CCcccccHHH
Q psy10926 95 RACMLRDVPFSAIYFPAYNHTKKRFADENGYNHPLTLLAAGCIAGIPAASLVTPADVIKTRLQVVARQ--GQTVYSGVVD 172 (227)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~i~~P~d~ik~~~q~~~~~--~~~~~~~~~~ 172 (227)
.+++++.+|..+++|.+||.+++.+.+.. ..+....+++|+++|++++++++|+|++|+|+|.+... .+..|.++++
T Consensus 177 ~~~l~~~~~~~~~~f~~ye~~k~~~~~~~-~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~ 255 (297)
T 1okc_A 177 NVSVQGIIIYRAAYFGVYDTAKGMLPDPK-NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVD 255 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCGGG-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCC-CccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCCCCCCHHH
Confidence 99999999999999999999999875432 45677889999999999999999999999999987532 2346899999
Q ss_pred HHHHHHHhhccchhccccccccccccccchhHHHHHHHHHHHH
Q psy10926 173 CARKIYQEEGARAFWKGTVARMFRSSPQFGVTLVMYELFQRLF 215 (227)
Q Consensus 173 ~~~~i~~~~G~~glyrG~~~~~~~~~~~~~i~~~~y~~~~~~~ 215 (227)
++++++++||++|||||+.|++++.. ..+++|.+||.+|+++
T Consensus 256 ~~~~i~~~eG~~glyrG~~~~~~r~~-~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 256 CWRKIAKDEGPKAFFKGAWSNVLRGM-GGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HHHHHHHHHCGGGGGTTHHHHHHHHH-HHHHHHHHHHTC----
T ss_pred HHHHHHHHcCcCeEecchHHHHHhhc-cceeeehHHHHHHhhC
Confidence 99999999999999999999999964 6799999999998753
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=4.5e-36 Score=246.44 Aligned_cols=176 Identities=28% Similarity=0.433 Sum_probs=159.6
Q ss_pred HhccchhhccCcHHHHHHHHHhcCCC---------CCCCchhHHHHHHHHhhchhhccccchhhhhcccccceeecchHH
Q psy10926 43 KAGFSQVMFTNPLEIVKIRLQVAGEV---------VAAPATKISAWSIVKELGFMGLYKGARACMLRDVPFSAIYFPAYN 113 (227)
Q Consensus 43 ~a~~~~~~i~~Pl~~ik~~~q~~~~~---------~~~~~~~~~~~~~~~~~G~~~ly~G~~~~~~~~~~~~~~~~~~~~ 113 (227)
-||+++.++++|+|++|+|+|++... ..+.+.++++++++++||+++||||+.+++++.+++.+++|.+||
T Consensus 10 ~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye 89 (303)
T 2lck_A 10 TAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYD 89 (303)
T ss_dssp HHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHHTTTHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 37888999999999999999998642 347899999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCChhHHHHHHHhhhhhhhhccccHHHHHHhhhccccC-CCcccccHHHHHHHHHHhhccchhcccccc
Q psy10926 114 HTKKRFADENGYNHPLTLLAAGCIAGIPAASLVTPADVIKTRLQVVARQ-GQTVYSGVVDCARKIYQEEGARAFWKGTVA 192 (227)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~i~~P~d~ik~~~q~~~~~-~~~~~~~~~~~~~~i~~~~G~~glyrG~~~ 192 (227)
.+++.+.+.....+....+++|++||+++.++++|+|++|+|+|.+... ....|.+.++++++++++||++|||||+.|
T Consensus 90 ~~k~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~ 169 (303)
T 2lck_A 90 SVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSP 169 (303)
T ss_dssp HHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHhcCCcCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccH
Confidence 9999987653346778899999999999999999999999999997642 334789999999999999999999999999
Q ss_pred ccccccccchhHHHHHHHHHHHHhhh
Q psy10926 193 RMFRSSPQFGVTLVMYELFQRLFYID 218 (227)
Q Consensus 193 ~~~~~~~~~~i~~~~y~~~~~~~~~~ 218 (227)
++++.+|..+++|.+||.+|+.+.+.
T Consensus 170 ~l~~~~~~~~i~f~~ye~~k~~l~~~ 195 (303)
T 2lck_A 170 NVARNAIVNCAELVTYDLIKDTLLKA 195 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999988654
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=2.9e-35 Score=240.99 Aligned_cols=174 Identities=24% Similarity=0.304 Sum_probs=153.7
Q ss_pred hccchhhccCcHHHHHHHHHhcCC------CCCCCchhHHHHHHHHhhchhhccccchhhhhcccccceeecchHHHHHH
Q psy10926 44 AGFSQVMFTNPLEIVKIRLQVAGE------VVAAPATKISAWSIVKELGFMGLYKGARACMLRDVPFSAIYFPAYNHTKK 117 (227)
Q Consensus 44 a~~~~~~i~~Pl~~ik~~~q~~~~------~~~~~~~~~~~~~~~~~~G~~~ly~G~~~~~~~~~~~~~~~~~~~~~~~~ 117 (227)
||+++.++.+|+|++|+|+|++.. ...+.+.++++++++++||+++||||+.+++++.++..+++|.+||.+++
T Consensus 17 ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~ 96 (297)
T 1okc_A 17 AAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQ 96 (297)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999863 22478999999999999999999999999999999999999999999999
Q ss_pred Hhhcc-CCCC----ChhHHHHHHHhhhhhhhhccccHHHHHHhhhccccC--CCcccccHHHHHHHHHHhhccchhcccc
Q psy10926 118 RFADE-NGYN----HPLTLLAAGCIAGIPAASLVTPADVIKTRLQVVARQ--GQTVYSGVVDCARKIYQEEGARAFWKGT 190 (227)
Q Consensus 118 ~~~~~-~~~~----~~~~~~~~g~~ag~~~~~i~~P~d~ik~~~q~~~~~--~~~~~~~~~~~~~~i~~~~G~~glyrG~ 190 (227)
.+.+. +... .....+++|++||++++++++|+|++|+|+|.+... ....|.+.++++++++++||++|||||+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~ 176 (297)
T 1okc_A 97 IFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGF 176 (297)
T ss_dssp HHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTH
T ss_pred HhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCc
Confidence 54332 2222 235678999999999999999999999999997532 2356899999999999999999999999
Q ss_pred ccccccccccchhHHHHHHHHHHHHhh
Q psy10926 191 VARMFRSSPQFGVTLVMYELFQRLFYI 217 (227)
Q Consensus 191 ~~~~~~~~~~~~i~~~~y~~~~~~~~~ 217 (227)
.|++++.+|..+++|.+||.+|+.+.+
T Consensus 177 ~~~l~~~~~~~~~~f~~ye~~k~~~~~ 203 (297)
T 1okc_A 177 NVSVQGIIIYRAAYFGVYDTAKGMLPD 203 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999997754
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=19.71 E-value=35 Score=21.38 Aligned_cols=38 Identities=16% Similarity=0.336 Sum_probs=30.2
Q ss_pred hccchhccccccccccccccchhHHHHHHHHHHHHhhh
Q psy10926 181 EGARAFWKGTVARMFRSSPQFGVTLVMYELFQRLFYID 218 (227)
Q Consensus 181 ~G~~glyrG~~~~~~~~~~~~~i~~~~y~~~~~~~~~~ 218 (227)
.|+...+|-+...++..+|..++.+.+|+..++.-...
T Consensus 32 ~~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l 69 (81)
T 3tgu_G 32 DALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERL 69 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHH
Confidence 56666777777888889999999999999988876543
No 6
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=17.04 E-value=48 Score=20.72 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=29.8
Q ss_pred hccchhccccccccccccccchhHHHHHHHHHHHHhhh
Q psy10926 181 EGARAFWKGTVARMFRSSPQFGVTLVMYELFQRLFYID 218 (227)
Q Consensus 181 ~G~~glyrG~~~~~~~~~~~~~i~~~~y~~~~~~~~~~ 218 (227)
+|+...+|-+...++..+|..++.+.+|+..++.-...
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~ 69 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKS 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHH
Confidence 55666777777777888899999999999988876543
No 7
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=15.48 E-value=35 Score=19.89 Aligned_cols=20 Identities=15% Similarity=0.273 Sum_probs=16.4
Q ss_pred ccHHHHHHHHHHhhccchhc
Q psy10926 168 SGVVDCARKIYQEEGARAFW 187 (227)
Q Consensus 168 ~~~~~~~~~i~~~~G~~gly 187 (227)
++..+.+.+|++++++-||+
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 46678889999999988876
No 8
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=14.44 E-value=61 Score=19.98 Aligned_cols=33 Identities=18% Similarity=0.388 Sum_probs=18.5
Q ss_pred cccccHHHHHHHHHHhhcc----chhccccccccccc
Q psy10926 165 TVYSGVVDCARKIYQEEGA----RAFWKGTVARMFRS 197 (227)
Q Consensus 165 ~~~~~~~~~~~~i~~~~G~----~glyrG~~~~~~~~ 197 (227)
+++.+.-+-...+..+-|+ +.+|.|+.....|.
T Consensus 6 pkftsvne~vsavltqygvtgpnraiyqgfglkvara 42 (100)
T 3f2e_A 6 PKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARA 42 (100)
T ss_dssp --CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHH
Confidence 4555555556666666665 44677776554443
No 9
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=14.15 E-value=30 Score=21.10 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=17.1
Q ss_pred cccccccchhhhhhhhccccC
Q psy10926 5 IGATAVYPIDLVKTRMQNQRT 25 (227)
Q Consensus 5 ~~~~~~~Pld~ik~~~Q~~~~ 25 (227)
++..+.-|.|+||+..|.++.
T Consensus 38 LA~~lgL~~~VVrVWFqNrRa 58 (71)
T 2da7_A 38 ISIAVGLPQEFVKEWFEQRKV 58 (71)
T ss_dssp HHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHhhccc
Confidence 456678899999999999863
No 10
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=12.78 E-value=1.1e+02 Score=24.01 Aligned_cols=35 Identities=20% Similarity=0.189 Sum_probs=24.5
Q ss_pred hhhhccccHHHHHHhhhccccCCCcccccHHHHHHHHHHhhcc
Q psy10926 141 PAASLVTPADVIKTRLQVVARQGQTVYSGVVDCARKIYQEEGA 183 (227)
Q Consensus 141 ~~~~i~~P~d~ik~~~q~~~~~~~~~~~~~~~~~~~i~~~~G~ 183 (227)
+++.=.+|||.+|-.++.-- +.-..+++.+.++|+
T Consensus 274 LaTFdnypfdllRfqL~Sli--------stp~~I~e~i~K~GL 308 (368)
T 3vjj_A 274 LATFDNYPFDLLRFQLSSLI--------STPALIREKIAKEGL 308 (368)
T ss_dssp HHHCTTCBHHHHHHHCSSCC--------CCCHHHHHHHHHSCS
T ss_pred eecCCCCCHHHHHHHhhhhc--------cChHHHHHHHHhcCc
Confidence 34556799999998776533 223567888888874
Done!