RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10926
(227 letters)
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein.
Length = 96
Score = 106 bits (268), Expect = 5e-30
Identities = 37/94 (39%), Positives = 51/94 (54%)
Query: 126 NHPLTLLAAGCIAGIPAASLVTPADVIKTRLQVVARQGQTVYSGVVDCARKIYQEEGARA 185
L L AG IAG AA++ P DV+KTRLQ A G Y G++DC +KIY+EEG R
Sbjct: 3 LSFLASLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGIRG 62
Query: 186 FWKGTVARMFRSSPQFGVTLVMYELFQRLFYIDF 219
+KG + + R +P + YE ++L
Sbjct: 63 LYKGLLPNLLRVAPAAAIYFGTYETLKKLLLKKL 96
Score = 76.1 bits (188), Expect = 4e-18
Identities = 38/119 (31%), Positives = 46/119 (38%), Gaps = 40/119 (33%)
Query: 5 IGATAVYPIDLVKTRMQNQRTGSFIGELMYRNSWDCFKKAGFSQVMFTNPLEIVKIRLQV 64
I AT YP+D+VKTR+Q+ G G Y+ DCFKK
Sbjct: 18 IAATVTYPLDVVKTRLQSSAAG---GSRKYKGILDCFKK--------------------- 53
Query: 65 AGEVVAAPATKISAWSIVKELGFMGLYKGARACMLRDVPFSAIYFPAYNHTKKRFADEN 123
I KE G GLYKG +LR P +AIYF Y KK +
Sbjct: 54 ----------------IYKEEGIRGLYKGLLPNLLRVAPAAAIYFGTYETLKKLLLKKL 96
>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase;
Provisional.
Length = 300
Score = 53.2 bits (128), Expect = 2e-08
Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 6/138 (4%)
Query: 81 IVKELGFMGLYKGARACMLRDVPFSAIYFPAYNHTKKR-FADENGYNHPLTLLAAGCIAG 139
I K+ GF+ LY+G + + + YF Y+ K F ++ N A +
Sbjct: 163 ISKQTGFLSLYQGFGVSVQGIIVYRGAYFGLYDSAKALLFGNDKNTNILYKWAVAQTVT- 221
Query: 140 IPAASLVTPADVIKTRLQVVA--RQGQTV-YSGVVDCARKIYQEEGARAFWKGTVARMFR 196
I A + P D ++ R+ +++ + + Y+G +DC +KI + EG F+KG A + R
Sbjct: 222 ILAGLISYPFDTVRRRMMMMSGRKAKSEIQYTGTLDCWKKILKNEGLGGFFKGAWANVLR 281
Query: 197 SSPQFGVTLVMYELFQRL 214
+ + LV Y+ Q+L
Sbjct: 282 GAGG-ALVLVFYDELQKL 298
Score = 52.5 bits (126), Expect = 4e-08
Identities = 49/203 (24%), Positives = 78/203 (38%), Gaps = 57/203 (28%)
Query: 1 MSTPIGATAVYPIDLVKTRMQNQRTGSFIGE---LMYRNSWDCFKKAGFSQVMFTNPLEI 57
+S I TAV PI+ VK +Q Q + I Y +CF++
Sbjct: 16 ISAAISKTAVAPIERVKMLIQTQDSIPEIKSGKVPRYSGIVNCFRR-------------- 61
Query: 58 VKIRLQVAGEVVAAPATKISAWSIVKELGFMGLYKGARACMLRDVPFSAI---------- 107
+ KE G + L++G A ++R P A
Sbjct: 62 -----------------------VSKEQGVLSLWRGNTANVIRYFPTQAFNFAFKDYFKN 98
Query: 108 YFPAYNHTKKRFADENGYNHPLTLLAAGCIAGIPAASLVTPADVIKTRLQV-VARQGQTV 166
FP YN K F G N + +G +AG + +V P D +TRL + + G
Sbjct: 99 MFPKYNQ-KTDFWKFFGVN-----ILSGGLAGASSLLIVYPLDFARTRLASDIGKGGDRE 152
Query: 167 YSGVVDCARKIYQEEGARAFWKG 189
++G+ DC KI ++ G + ++G
Sbjct: 153 FTGLFDCLMKISKQTGFLSLYQG 175
Score = 40.9 bits (96), Expect = 3e-04
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 121 DENGYNHPLTLLAAGCIAGIPAASLVTPADVIKTRLQVV-----ARQGQTV-YSGVVDCA 174
+ N L G A I + + V P + +K +Q + G+ YSG+V+C
Sbjct: 1 MDKKTNFATDFLMGGISAAI-SKTAVAPIERVKMLIQTQDSIPEIKSGKVPRYSGIVNCF 59
Query: 175 RKIYQEEGARAFWKGTVARMFRSSPQFGVTLVMYELFQRLF 215
R++ +E+G + W+G A + R P + F+ +F
Sbjct: 60 RRVSKEQGVLSLWRGNTANVIRYFPTQAFNFAFKDYFKNMF 100
Score = 33.2 bits (76), Expect = 0.079
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 7/60 (11%)
Query: 3 TPIGATAVYPIDLVKTRMQNQRTGSFIGELMYRNSWDCFKK-------AGFSQVMFTNPL 55
T + YP D V+ RM E+ Y + DC+KK GF + + N L
Sbjct: 221 TILAGLISYPFDTVRRRMMMMSGRKAKSEIQYTGTLDCWKKILKNEGLGGFFKGAWANVL 280
>gnl|CDD|185494 PTZ00168, PTZ00168, mitochondrial carrier protein; Provisional.
Length = 259
Score = 47.2 bits (112), Expect = 2e-06
Identities = 60/228 (26%), Positives = 92/228 (40%), Gaps = 56/228 (24%)
Query: 10 VYPIDLVKTRMQNQRTGSF--------------IGELMYRNSWDCF----KK-------- 43
+YPID +KT +Q +++ SF +G + + CF KK
Sbjct: 21 LYPIDSIKTNIQAKKSFSFSDIKKLYSGILPTLVGTVPASAFFYCFYELSKKLLTEYREN 80
Query: 44 -------------AGFSQVMFTNPLEIVKIRLQVAGEVVAAPATKISAWSIVKELGFMG- 89
A + + P EIVK +QV+G + + + + I + G
Sbjct: 81 ISKTNLYLISTSIAEITACIVRLPFEIVKQNMQVSGNI----SVLKTIYEITQREGLPSF 136
Query: 90 LYKGARACMLRDVPFSAI-YF---PAYNHTKKRFADENGYNHPLTLLAAGCIAGIPAASL 145
L K ++R++PF I YF KK F + +T G +AG A L
Sbjct: 137 LGKSYFVMIVREIPFDCIQYFLWETLKEKAKKDFGKFSKKYPSITSAICGGLAGGIAGFL 196
Query: 146 VTPADVIKTRLQVVARQGQTVYSGVVDCARKIYQEEGARAFWKGTVAR 193
TP DVIK+R Q++ G++ V + A EEG F+KG R
Sbjct: 197 TTPVDVIKSR-QII--YGKSYIETVTEIA-----EEGYLTFYKGCCFR 236
>gnl|CDD|234014 TIGR02786, addB_alphas, double-strand break repair protein AddB,
alphaproteobacterial type. AddAB is a system well
described in the Firmicutes as a replacement for RecBCD
in many prokaryotes for the repair of double stranded
break DNA damage. More recently, a distantly related
gene pair conserved in many alphaproteobacteria was
shown also to function in double-stranded break repair
in Rhizobium etli. This family consists of AddB proteins
of the alphaproteobacteial type [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1021
Score = 31.6 bits (72), Expect = 0.40
Identities = 29/102 (28%), Positives = 40/102 (39%), Gaps = 21/102 (20%)
Query: 117 KRFADENGYNHPLT-LLAAGCIAGIPAASLVTPADVIKTRLQVVAR--QGQTVYSGV-VD 172
+ A N P ++AAG IPA + + L VVAR QG V G+ +D
Sbjct: 203 RALAARWATNPPEGPVIAAGSTGSIPATADL---------LAVVARLPQGAVVLPGLDLD 253
Query: 173 CARKIYQEEGARAFWKGTVARMFRSSPQFGVTLVMYELFQRL 214
+ +Q G GT PQ+G + L RL
Sbjct: 254 MDEEAWQALGP----AGTDPPSVFGHPQYG----LKRLLDRL 287
>gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional.
Length = 105
Score = 29.7 bits (66), Expect = 0.41
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 10/75 (13%)
Query: 86 GFMGLYKGARACMLRD---VPFSAIYFPAYNHTKKRFADENGYNHPLTLLAAGCIAGIPA 142
G + +Y G + M + VP S + P++ R +E G+NHP+ L IP
Sbjct: 38 GHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLT------IPC 91
Query: 143 ASLVTPADVIKTRLQ 157
V D+I +RL
Sbjct: 92 REEVF-LDLIASRLH 105
>gnl|CDD|226187 COG3661, AguA, Alpha-glucuronidase [Carbohydrate transport and
metabolism].
Length = 684
Score = 31.4 bits (71), Expect = 0.42
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 152 IKTRLQVVARQGQTVYSGVVDCARKIYQEEGARAFWKGTVARMFRSSPQFGVTLV 206
IK L + G + A + +E RA+WK +++ P FG LV
Sbjct: 235 IKVYLS--INFASPMELGGLKTADPL--DEAVRAWWKEKADEIYKYIPDFGGFLV 285
>gnl|CDD|234260 TIGR03562, osmo_induc_OsmC, peroxiredoxin, OsmC subfamily.
pfam02566, OsmC-like protein, contains several deeply
split clades of homologous proteins. The clade modeled
here includes the protein OsmC, or osmotically induced
protein C. The member from Thermus thermophilus was
shown to have hydroperoxide peroxidase activity. In many
species, this protein is induced by stress and helps
resist oxidative stress [Cellular processes,
Detoxification].
Length = 135
Score = 29.5 bits (67), Expect = 0.66
Identities = 19/49 (38%), Positives = 20/49 (40%), Gaps = 14/49 (28%)
Query: 116 KKRFADENGYNHPLTLLAA---GCI----------AGIPAASLVTPADV 151
K RF D G N P L+AA GC AG SL T A V
Sbjct: 33 KTRFEDGPGTN-PEELIAAAHAGCFSMALSAALAEAGFTPESLDTTATV 80
>gnl|CDD|102532 PRK06755, PRK06755, hypothetical protein; Validated.
Length = 209
Score = 30.0 bits (67), Expect = 0.68
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 141 PAASLVTPADVIKTRLQVVARQGQTVYSGVVDCARKIYQEEGARAFWKGTVARMFRS 197
PAA AD+ K Q QTV S ++ ++Y EEG F K +V R+F
Sbjct: 76 PAAESFMHADIYKKSSAECILQVQTVDSHLIS---ELYGEEGEVTFDKRSVERVFGK 129
>gnl|CDD|180263 PRK05799, PRK05799, coproporphyrinogen III oxidase; Provisional.
Length = 374
Score = 30.0 bits (68), Expect = 1.0
Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
Query: 36 NSWDCFKKAGFSQV----MFTNPLEIVKIRLQVAGEVVAAPATKISAWSIVKELG--FMG 89
++ +K GF+ + MF P + ++ + +VV IS +S++ E G F
Sbjct: 139 ENYKLARKLGFNNINVDLMFGLPNQTLEDWKETLEKVVELNPEHISCYSLIIEEGTPFYN 198
Query: 90 LYKGARACMLRDVPFSAIYFPAYNHTKKRFADENGYNH 127
LY+ + +P Y++T + F E GY+
Sbjct: 199 LYENGKL----KLPDEEEEREMYHYTIE-FLKEKGYHQ 231
>gnl|CDD|99933 cd05501, Bromo_SP100C_like, Bromodomain, SP100C_like subfamily.
The SP100C protein is a splice variant of SP100, a
major component of PML-SP100 nuclear bodies (NBs),
which are poorly understood. It is covalently modified
by SUMO-1 and may play a role in processes at the
chromatin level. Bromodomains are 110 amino acid long
domains, that are found in many chromatin associated
proteins. Bromodomains can interact specifically with
acetylated lysine.
Length = 102
Score = 27.4 bits (61), Expect = 3.0
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 13 IDLVKTRMQNQ---RTGSFIGE--LMYRNSWDCFKKAGFSQVMFT 52
++ VK R+ + F+ + L++ N +K F QV T
Sbjct: 43 LNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKDDDFGQVGIT 87
>gnl|CDD|234630 PRK00095, mutL, DNA mismatch repair protein; Reviewed.
Length = 617
Score = 27.9 bits (63), Expect = 5.1
Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 6/21 (28%)
Query: 65 AGEVVAAPATKISAWSIVKEL 85
AGEVV PA S+VKEL
Sbjct: 16 AGEVVERPA------SVVKEL 30
>gnl|CDD|197612 smart00263, LYZ1, Alpha-lactalbumin / lysozyme C.
Length = 127
Score = 26.9 bits (60), Expect = 5.5
Identities = 8/19 (42%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 171 VDCARKIYQEEGARAFWKG 189
V CA+KI ++G A W
Sbjct: 92 VKCAKKIVSDQGIDA-WVA 109
>gnl|CDD|180749 PRK06920, dnaE, DNA polymerase III DnaE; Reviewed.
Length = 1107
Score = 27.1 bits (60), Expect = 9.9
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 19/63 (30%)
Query: 83 KELGFMGLYKGARACMLRDVPFSAIYFPAYNHTKKR------------FADENGYNHPLT 130
KELG+ L A +V + I F Y KK F++E ++PL
Sbjct: 29 KELGYSSL-----AITDENVMYGVIPF--YKACKKHGIHPIIGLTASIFSEEEEKSYPLV 81
Query: 131 LLA 133
LLA
Sbjct: 82 LLA 84
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.137 0.417
Gapped
Lambda K H
0.267 0.0740 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,744,209
Number of extensions: 1105824
Number of successful extensions: 1186
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1177
Number of HSP's successfully gapped: 29
Length of query: 227
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 134
Effective length of database: 6,812,680
Effective search space: 912899120
Effective search space used: 912899120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (25.7 bits)