RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10926
(227 letters)
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
transporter, nucleotide translocation, membrane protein,
transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
f.42.1.1 PDB: 2c3e_A*
Length = 297
Score = 166 bits (423), Expect = 4e-51
Identities = 44/177 (24%), Positives = 74/177 (41%), Gaps = 8/177 (4%)
Query: 44 AGFSQVMFTNPLEIVKIRLQVAGEVVAAPAT----KISAWSIVKELGFMGLYKGARACML 99
AG + + F PL+ + RL AA I K G GLY+G +
Sbjct: 122 AGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQ 181
Query: 100 RDVPFSAIYFPAYNHTKKRFADENGYNHPLTLLAAGCIAGIPAASLVTPADVIKTRLQVV 159
+ + A YF Y+ K D + + A + P D ++ R+ +
Sbjct: 182 GIIIYRAAYFGVYDTAKGMLPDPKNVH-IIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQ 240
Query: 160 ARQ--GQTVYSGVVDCARKIYQEEGARAFWKGTVARMFRSSPQFGVTLVMYELFQRL 214
+ + +Y+G VDC RKI ++EG +AF+KG + + R LV+Y+ ++
Sbjct: 241 SGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGG-AFVLVLYDEIKKF 296
Score = 126 bits (320), Expect = 1e-35
Identities = 49/219 (22%), Positives = 79/219 (36%), Gaps = 45/219 (20%)
Query: 5 IGATAVYPIDLVKTRMQNQRTGSFI-GELMYRNSWDCFKKAGFSQVMFTNPLEIVKIRLQ 63
I TAV PI+ VK +Q Q I E Y+ DC +
Sbjct: 20 ISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVR-------------------- 59
Query: 64 VAGEVVAAPATKISAWSIVKELGFMGLYKGARACMLRDVPFSAIYFPAYNHTKKRFADEN 123
I KE GF+ ++G A ++R P A+ F + K+ F
Sbjct: 60 -----------------IPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGV 102
Query: 124 GYNHPLTL-----LAAGCIAGIPAASLVTPADVIKTRL--QVVARQGQTVYSGVVDCARK 176
+ LA+G AG + V P D +TRL V Q ++G+ +C K
Sbjct: 103 DRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITK 162
Query: 177 IYQEEGARAFWKGTVARMFRSSPQFGVTLVMYELFQRLF 215
I++ +G R ++G + +Y+ + +
Sbjct: 163 IFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGML 201
Score = 75.0 bits (185), Expect = 2e-16
Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 132 LAAGCIAGIPAASLVTPADVIKTRLQV----VARQGQTVYSGVVDCARKIYQEEGARAFW 187
AG +A + + V P + +K LQV + Y G++DC +I +E+G +FW
Sbjct: 11 FLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFW 70
Query: 188 KGTVARMFRSSPQFGVTLVMYELFQRLFYIDFGGSRP 224
+G +A + R P + + ++++F +
Sbjct: 71 RGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQ 107
Score = 67.7 bits (166), Expect = 1e-13
Identities = 26/117 (22%), Positives = 40/117 (34%), Gaps = 39/117 (33%)
Query: 1 MSTPIGATAVYPIDLVKTRMQNQRTGSFIGELMYRNSWDCFKKAGFSQVMFTNPLEIVKI 60
T + YP D V+ RM Q +G ++MY + DC++K
Sbjct: 218 TVTAVAGLVSYPFDTVRRRMMMQ-SGRKGADIMYTGTVDCWRK----------------- 259
Query: 61 RLQVAGEVVAAPATKISAWSIVKELGFMGLYKGARACMLRDVPFSAIYFPAYNHTKK 117
I K+ G +KGA + +LR + A Y+ KK
Sbjct: 260 --------------------IAKDEGPKAFFKGAWSNVLRGMG-GAFVLVLYDEIKK 295
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 148 bits (376), Expect = 6e-44
Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 9/177 (5%)
Query: 44 AGFSQVMFTNPLEIVKIRLQVAGEVVAAPATKISAW----SIVKELGFMGLYKGARACML 99
G V P ++VK+R Q + S +I +E G GL+KG +
Sbjct: 114 TGALAVAVAQPTDVVKVRFQAQARAGGGRRYQ-STVEAYKTIAREEGIRGLWKGTSPNVA 172
Query: 100 RDVPFSAIYFPAYNHTKKRFADENGYNHPLTL-LAAGCIAGIPAASLVTPADVIKTRLQV 158
R+ + Y+ K N L + AG + +P DV+KTR
Sbjct: 173 RNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYM- 231
Query: 159 VARQGQTVYSGVVDCARKIYQEEGARAFWKGTVARMFRSSPQFGVTLVMYELFQRLF 215
Y CA + ++EG RAF+KG + R V V YE +R
Sbjct: 232 --NSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRAL 286
Score = 141 bits (357), Expect = 4e-41
Identities = 52/182 (28%), Positives = 81/182 (44%), Gaps = 10/182 (5%)
Query: 44 AGFSQVMFTNPLEIVKIRLQVAGEVVAAPATKIS---------AWSIVKELGFMGLYKGA 94
A + T PL+ K+RLQ+ GE T S ++V+ G LY G
Sbjct: 11 AACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGL 70
Query: 95 RACMLRDVPFSAIYFPAYNHTKKRFADENGYNHPLTLLAAGCIAGIPAASLVTPADVIKT 154
A + R + F+++ Y+ K+ + + + + L AG G A ++ P DV+K
Sbjct: 71 VAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKV 130
Query: 155 RLQVVARQG-QTVYSGVVDCARKIYQEEGARAFWKGTVARMFRSSPQFGVTLVMYELFQR 213
R Q AR G Y V+ + I +EEG R WKGT + R++ LV Y+L +
Sbjct: 131 RFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKD 190
Query: 214 LF 215
Sbjct: 191 TL 192
Score = 72.7 bits (179), Expect = 2e-15
Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 7/91 (7%)
Query: 132 LAAGCIAGIPAASLVTPADVIKTRLQV-------VARQGQTVYSGVVDCARKIYQEEGAR 184
A A + P D K RLQ+ V Y GV+ + + EG R
Sbjct: 5 FLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPR 64
Query: 185 AFWKGTVARMFRSSPQFGVTLVMYELFQRLF 215
+ + G VA + R V + +Y+ ++ +
Sbjct: 65 SLYNGLVAGLQRQMSFASVRIGLYDSVKQFY 95
Score = 59.6 bits (145), Expect = 7e-11
Identities = 19/120 (15%), Positives = 31/120 (25%), Gaps = 43/120 (35%)
Query: 5 IGATAVYPIDLVKTRMQNQRTGSFIGELMYRNSWDCFKKAGFSQVMFTNPLEIVKIRLQV 64
P+D+VKTR N G Y ++ C
Sbjct: 215 CTTVIASPVDVVKTRYMNSALGQ------YHSAGHCALT--------------------- 247
Query: 65 AGEVVAAPATKISAWSIVKELGFMGLYKGARACMLRDVPFSAIYFPAYNHTKKRFADENG 124
++++ G YKG LR ++ + F Y K+
Sbjct: 248 ----------------MLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQ 291
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.005
Identities = 48/264 (18%), Positives = 76/264 (28%), Gaps = 112/264 (42%)
Query: 36 NSWDCFKKAGFS--QVMFTNPLEIVKIRLQVAGEVVAAPATKISAWSIVKELGFMGLYKG 93
+SW+ F + V+F + +R A P T + SI+++ +G
Sbjct: 287 DSWESFFVSVRKAITVLF-----FIGVRCYEA-----YPNTSLPP-SILEDSLENN--EG 333
Query: 94 ARACML--RDVPFSAI---------YFPAYNHTKKRFADENGYNH------PLTLLA--- 133
+ ML ++ + + PA + NG + P +L
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV--EISLVNGAKNLVVSGPPQSLYGLNL 391
Query: 134 ----AGCIAG-----IPAA-------------------SLVTPA-DVIKTRLQ---VVAR 161
A +G IP + L+ PA D+I L V
Sbjct: 392 TLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFN 451
Query: 162 QGQ---TVYS---G-------------VVDCARKIYQEEGARAFWKGTVARMFRSSPQFG 202
VY G +VDC I + W+ T QF
Sbjct: 452 AKDIQIPVYDTFDGSDLRVLSGSISERIVDC---IIRL---PVKWETTT--------QFK 497
Query: 203 VTLVMYELFQRLFYIDFGGSRPSG 226
T + +DFG SG
Sbjct: 498 ATHI----------LDFGPGGASG 511
Score = 31.2 bits (70), Expect = 0.29
Identities = 23/140 (16%), Positives = 37/140 (26%), Gaps = 47/140 (33%)
Query: 99 LRDVPFSAIYFP--------AYNHTKKRFADENGYNHPLTLL-----AAGCIAGIPAASL 145
L +P S P Y T K G+ P L A G G+ A
Sbjct: 231 LLSIPIS---CPLIGVIQLAHYVVTAKLL----GFT-PGELRSYLKGATGHSQGLVTAVA 282
Query: 146 VTPADVIKTRLQVVARQGQTVYSGVVDCARKIYQEEGARAFWKGTVARMFRSSPQFGVTL 205
+ D ++ + RK F+ G R + T
Sbjct: 283 IAETD-----------SWESFF----VSVRKAIT----VLFFIG-----VRCYEAYPNTS 318
Query: 206 VMYELFQRLFYIDFGGSRPS 225
+ + + ++ PS
Sbjct: 319 LPPSILED--SLENNEGVPS 336
Score = 30.8 bits (69), Expect = 0.45
Identities = 22/123 (17%), Positives = 39/123 (31%), Gaps = 29/123 (23%)
Query: 44 AGFSQVM-FTNPLEIVKIRLQVAGEVV--AAPATKISAWSIVKELGFMGLYKGARACMLR 100
A + VM + +E+V R G + A P ++ G + + G A
Sbjct: 1771 ASLADVMSIESLVEVVFYR----GMTMQVAVPRDELGR----SNYGMIAINPGRVAASFS 1822
Query: 101 DVPFSAIYFPAYNHTKKRFADENG-------YNHP-LTLLAAGCIAGIPAASLVTPADVI 152
+ +R G YN +AAG + + + V + I
Sbjct: 1823 QEALQYV--------VERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNV--LNFI 1872
Query: 153 KTR 155
K +
Sbjct: 1873 KLQ 1875
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.62
Identities = 8/29 (27%), Positives = 16/29 (55%), Gaps = 6/29 (20%)
Query: 56 EIVKI--RLQV-AGEVVAAPATKISAWSI 81
+ K+ L++ A + +APA I A ++
Sbjct: 21 ALKKLQASLKLYADD--SAPALAIKA-TM 46
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA
damag repair, structural genomics consortium, SGC,
protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Length = 348
Score = 29.8 bits (68), Expect = 0.77
Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 6/21 (28%)
Query: 65 AGEVVAAPATKISAWSIVKEL 85
AGEV+ PA + +KE+
Sbjct: 22 AGEVIQRPA------NAIKEM 36
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A;
serine/threonine-protein kinase, minibrain homolog,
nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A
{Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Length = 382
Score = 29.3 bits (66), Expect = 0.96
Identities = 12/80 (15%), Positives = 25/80 (31%), Gaps = 25/80 (31%)
Query: 101 DVPFSAIYFPAYNHTKKR-------FADENGYNHPLTLLAAGCIAGIPAASLVTPADVIK 153
D+ +YF + + KK + D+N +V +
Sbjct: 12 DLGTENLYFQSMSSHKKERKVYNDGYDDDNYD------------------YIVKNGEKWM 53
Query: 154 TRLQVVARQGQTVYSGVVDC 173
R ++ + G+ + VV
Sbjct: 54 DRYEIDSLIGKGSFGQVVKA 73
>2zvb_A Precorrin-3 C17-methyltransferase; plasmid, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SAH; 2.00A {Thermus
thermophilus} PDB: 2zvc_A*
Length = 295
Score = 28.5 bits (64), Expect = 1.6
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 9/44 (20%)
Query: 132 LAAGCIAGIP------AASLV---TPADVIKTRLQVVARQGQTV 166
A + G P SL TP +I+ RL + V
Sbjct: 135 NAVASLLGSPLAHDTCLISLSDLLTPWPLIERRLHAAGQGDFVV 178
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA
damage, nucleus, phosphop DNA binding protein, protein
binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Length = 367
Score = 28.3 bits (64), Expect = 2.0
Identities = 6/21 (28%), Positives = 10/21 (47%), Gaps = 6/21 (28%)
Query: 65 AGEVVAAPATKISAWSIVKEL 85
+G+V+ + VKEL
Sbjct: 19 SGQVITDLT------TAVKEL 33
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia
coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A*
1bkn_A 1nhj_A* 1b62_A*
Length = 333
Score = 28.2 bits (64), Expect = 2.4
Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 6/21 (28%)
Query: 65 AGEVVAAPATKISAWSIVKEL 85
AGEVV PA S+VKEL
Sbjct: 18 AGEVVERPA------SVVKEL 32
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair,
HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2
PDB: 1h7u_A* 1ea6_A*
Length = 365
Score = 27.9 bits (63), Expect = 2.5
Identities = 7/21 (33%), Positives = 12/21 (57%), Gaps = 6/21 (28%)
Query: 65 AGEVVAAPATKISAWSIVKEL 85
+G+VV + + + VKEL
Sbjct: 28 SGQVVLSLS------TAVKEL 42
>1iiz_A Lysozyme; hydrolase; 2.40A {Antheraea mylitta} SCOP: d.2.1.2 PDB:
1gd6_A
Length = 120
Score = 26.5 bits (58), Expect = 4.3
Identities = 8/19 (42%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Query: 171 VDCARKIYQEEGARAFWKG 189
CA+KIY+ A W G
Sbjct: 88 STCAKKIYKRTKFDA-WSG 105
>1b9o_A Protein (alpha-lactalbumin); calcium-binding protein, high
resolution; 1.15A {Homo sapiens} SCOP: d.2.1.2 PDB:
1a4v_A 1alc_A 1hmk_A 1hfy_A 1f6r_A 1f6s_A 2g4n_A 1fkq_A
1fkv_A 1hfz_A 1hfx_A
Length = 123
Score = 26.2 bits (57), Expect = 5.3
Identities = 6/19 (31%), Positives = 9/19 (47%), Gaps = 1/19 (5%)
Query: 171 VDCARKIYQEEGARAFWKG 189
+ CA+KI +G W
Sbjct: 89 IMCAKKILDIKGIDY-WLA 106
>1yro_A Alpha-lactalbumin; Arg228Lys mutation, UDP-GAL complex, transferase
activator/transferase complex; HET: GDU UDP MES PG4;
1.90A {Mus musculus} SCOP: d.2.1.2 PDB: 1nhe_A* 1nkh_A*
1nmm_A* 1nqi_A* 1nwg_A* 1o23_A* 1oqm_A* 1pzy_A* 1nf5_A*
2fyc_A* 2fyd_A*
Length = 123
Score = 26.2 bits (57), Expect = 5.8
Identities = 7/19 (36%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Query: 171 VDCARKIYQEEGARAFWKG 189
+ CA+KI +G WK
Sbjct: 89 IACAKKILAIKGIDY-WKA 106
>3nut_A Precorrin-3 methylase; vitamin B12 pathway, cobalamin,
methyltransferase, transfera; HET: SAH; 2.22A
{Rhodobacter capsulatus}
Length = 251
Score = 26.9 bits (60), Expect = 5.8
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 11/50 (22%)
Query: 132 LAAGCIAGIP---------AASLVTPADVIKTRLQVVARQGQTV--YSGV 170
LAA AG P + + P ++++ RL+ AR + Y+
Sbjct: 123 LAAAAAAGAPLGHDFCAINLSDNLKPFEILEKRLRHAARGDFAMAFYNPR 172
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.137 0.417
Gapped
Lambda K H
0.267 0.0848 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,564,087
Number of extensions: 213615
Number of successful extensions: 529
Number of sequences better than 10.0: 1
Number of HSP's gapped: 508
Number of HSP's successfully gapped: 35
Length of query: 227
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 137
Effective length of database: 4,188,903
Effective search space: 573879711
Effective search space used: 573879711
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (24.7 bits)