RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10926
(227 letters)
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
heart isoform t1 [TaxId: 9913]}
Length = 292
Score = 82.5 bits (202), Expect = 2e-19
Identities = 43/183 (23%), Positives = 77/183 (42%), Gaps = 8/183 (4%)
Query: 33 MYRNSWDCFKKAGFSQVMFTNPLEIVKIRLQVAGEVVAAPATKISAWSIV----KELGFM 88
+ + AG + + F PL+ + RL AA + + K G
Sbjct: 110 YFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLR 169
Query: 89 GLYKGARACMLRDVPFSAIYFPAYNHTKKRFADENGYNHPLTLLAAGCIAGIPAASLVTP 148
GLY+G + + + A YF Y+ K D + ++ + A + + P
Sbjct: 170 GLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLV-SYP 228
Query: 149 ADVIKTRLQV--VARQGQTVYSGVVDCARKIYQEEGARAFWKGTVARMFRSSPQFGVTLV 206
D ++ R+ + + +Y+G VDC RKI ++EG +AF+KG + + R LV
Sbjct: 229 FDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGG-AFVLV 287
Query: 207 MYE 209
+Y+
Sbjct: 288 LYD 290
Score = 59.7 bits (143), Expect = 3e-11
Identities = 40/215 (18%), Positives = 67/215 (31%), Gaps = 35/215 (16%)
Query: 5 IGATAVYPIDLVKTRMQNQRTGSFIG-ELMYRNSWDCFKKAGFSQVMFTNPLEIVKIRLQ 63
I TAV PI+ VK +Q Q I E Y+ DC
Sbjct: 19 ISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVV--------------------- 57
Query: 64 VAGEVVAAPATKISAWSIVKELGFMGLYKGARACMLRDVPFSAIYFPAYNHTKKRFADEN 123
+I L R + + F+ +
Sbjct: 58 -----------RIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQ 106
Query: 124 GYNHPLTLLAAGCIAGIPAASLVTPADVIKTRL--QVVARQGQTVYSGVVDCARKIYQEE 181
+ + LA+G AG + V P D +TRL V Q ++G+ +C KI++ +
Sbjct: 107 FWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSD 166
Query: 182 GARAFWKGTVARMFRSSPQFGVTLVMYELFQRLFY 216
G R ++G + +Y+ + +
Sbjct: 167 GLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLP 201
Score = 53.2 bits (126), Expect = 4e-09
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 132 LAAGCIAGIPAASLVTPADVIKTRLQV----VARQGQTVYSGVVDCARKIYQEEGARAFW 187
AG +A + + V P + +K LQV + Y G++DC +I +E+G +FW
Sbjct: 10 FLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFW 69
Query: 188 KGTVARMFRSSPQFGVTLVMYELFQRLF 215
+G +A + R P + + ++++F
Sbjct: 70 RGNLANVIRYFPTQALNFAFKDKYKQIF 97
Score = 40.5 bits (93), Expect = 8e-05
Identities = 23/108 (21%), Positives = 36/108 (33%), Gaps = 39/108 (36%)
Query: 5 IGATAVYPIDLVKTRMQNQRTGSFIGELMYRNSWDCFKKAGFSQVMFTNPLEIVKIRLQV 64
+ YP D V+ RM Q +G ++MY + DC++K
Sbjct: 221 VAGLVSYPFDTVRRRMMMQ-SGRKGADIMYTGTVDCWRK--------------------- 258
Query: 65 AGEVVAAPATKISAWSIVKELGFMGLYKGARACMLRDVPFSAIYFPAY 112
I K+ G +KGA + +LR + A Y
Sbjct: 259 ----------------IAKDEGPKAFFKGAWSNVLRGMG-GAFVLVLY 289
>d1gd6a_ d.2.1.2 (A:) Lysozyme {Silkworm (Bombyx mori) [TaxId:
7091]}
Length = 119
Score = 27.5 bits (61), Expect = 0.68
Identities = 8/19 (42%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Query: 171 VDCARKIYQEEGARAFWKG 189
CA+KIY+ A W G
Sbjct: 87 AKCAKKIYKRHRFDA-WYG 104
>d1hfxa_ d.2.1.2 (A:) alpha-Lactalbumin {Guinea pig (Cavia
porcellus) [TaxId: 10141]}
Length = 123
Score = 27.1 bits (60), Expect = 0.89
Identities = 5/19 (26%), Positives = 8/19 (42%), Gaps = 1/19 (5%)
Query: 171 VDCARKIYQEEGARAFWKG 189
+ C +KI +G W
Sbjct: 89 IMCVKKILDIKGIDY-WLA 106
>d1yroa1 d.2.1.2 (A:1-123) alpha-Lactalbumin {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 123
Score = 27.1 bits (60), Expect = 0.89
Identities = 7/19 (36%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Query: 171 VDCARKIYQEEGARAFWKG 189
+ CA+KI +G WK
Sbjct: 89 IACAKKILAIKGIDY-WKA 106
>d1d8ja_ a.4.5.18 (A:) The central core domain of TFIIE beta {Human
(Homo sapiens) [TaxId: 9606]}
Length = 81
Score = 25.9 bits (57), Expect = 1.6
Identities = 9/19 (47%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
Query: 113 NHTKKRFADENGYNHPLTL 131
N+ K R + G HPLTL
Sbjct: 18 NYMKTRH--QRGDTHPLTL 34
>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus
niger [TaxId: 5061]}
Length = 385
Score = 27.2 bits (59), Expect = 2.0
Identities = 19/80 (23%), Positives = 26/80 (32%), Gaps = 10/80 (12%)
Query: 131 LLAAGCIA--------GIPAASLVTPA--DVIKTRLQVVARQGQTVYSGVVDCARKIYQE 180
LLAAG GI S++ P D + + GVVD A ++Y
Sbjct: 284 LLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLPVGLCSMMPKEMGGVVDNAARVYGV 343
Query: 181 EGARAFWKGTVARMFRSSPQ 200
+G R S
Sbjct: 344 QGLRVIDGSIPPTQMSSHVM 363
>d1b9oa_ d.2.1.2 (A:) alpha-Lactalbumin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 123
Score = 26.0 bits (57), Expect = 2.1
Identities = 6/19 (31%), Positives = 9/19 (47%), Gaps = 1/19 (5%)
Query: 171 VDCARKIYQEEGARAFWKG 189
+ CA+KI +G W
Sbjct: 89 IMCAKKILDIKGIDY-WLA 106
>d1jmxa1 a.3.1.7 (A:2-85) Quinohemoprotein amine dehydrogenase A
chain, domains 1 and 2 {Pseudomonas putida [TaxId: 303]}
Length = 84
Score = 24.9 bits (54), Expect = 3.7
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 168 SGVVDCARKIYQEEGARAFWKGTVARM 194
D +I + W ++ARM
Sbjct: 17 PEGNDTYSRISHQRKTPEGWLMSIARM 43
>d1pbya1 a.3.1.7 (A:1-85) Quinohemoprotein amine dehydrogenase A
chain, domains 1 and 2 {Paracoccus denitrificans [TaxId:
266]}
Length = 85
Score = 24.5 bits (53), Expect = 4.9
Identities = 6/27 (22%), Positives = 7/27 (25%)
Query: 168 SGVVDCARKIYQEEGARAFWKGTVARM 194
+I W TV RM
Sbjct: 17 QHEDGRWERIDAARKTPEGWDMTVTRM 43
>d1h41a1 c.1.8.10 (A:152-712) alpha-D-glucuronidase catalytic domain
{Pseudomonas cellulosa [TaxId: 155077]}
Length = 561
Score = 25.8 bits (57), Expect = 4.9
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 180 EEGARAFWKGTVARMFRSSPQFGVTLV 206
+ + +WK +++ P FG LV
Sbjct: 110 DPRVQQWWKTRAQKIYSYIPDFGGFLV 136
>d1l8na1 c.1.8.10 (A:143-678) alpha-D-glucuronidase catalytic domain
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 536
Score = 25.8 bits (57), Expect = 5.7
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 180 EEGARAFWKGTVARMFRSSPQFGVTLV 206
+ R +WK T R+++ P FG +V
Sbjct: 112 DPEVRWWWKETAKRIYQYIPDFGGFVV 138
>d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc
{Bacillus subtilis [TaxId: 1423]}
Length = 158
Score = 25.1 bits (55), Expect = 5.9
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 30 GELMYRNSWDCFKKAGFS---QVMFTNPLEIVKIRLQVAGEVVAA 71
G+ + D K S ++FTN E + ++ +G V
Sbjct: 106 GQKLLEVDLDAVKPNVPSLMTPIVFTNLAEGETVSIKASGSVNRE 150
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.137 0.417
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 847,423
Number of extensions: 37490
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 16
Length of query: 227
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 145
Effective length of database: 1,281,736
Effective search space: 185851720
Effective search space used: 185851720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.6 bits)