BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10927
(858 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1
Length = 248
Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 104/227 (45%), Positives = 146/227 (64%), Gaps = 3/227 (1%)
Query: 567 KDVVHQLTVSLEDLYRGTVKKLQLEKNVICDKCEGRGGKKGAAESCPGCRGTGMTVTVQQ 626
KD+ H+++ SLE+LY+G KL L K ++C +CEGRGGKKGA + C C G G+ +Q
Sbjct: 12 KDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQ 71
Query: 627 FGPGMIQQIQTVCSECRGQGSRINPKDRCKTCNGKKTVRDRKILEVHIDKGMIDQQKIVF 686
GP MIQ+ QT C C G G I+PKDRCK+CNGKK +RKILEVH++ GM D Q+IVF
Sbjct: 72 MGP-MIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVF 130
Query: 687 NGEGDQEPGLEHGDIIIVLEEKPHPVFKRSGNNLIIRPYEIALVEALCGFRRPIKTLDDR 746
GE DQ P + GD++ ++ E+PH FKR G++L+ EI L+ A+ G ++ +
Sbjct: 131 KGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEA-EIDLLTAIAGGEFALEHVSGD 189
Query: 747 DIIISAAPGEVMKHSDIKMVVGEGMPTYKDPFEKGNLIIVFSVKFPD 793
+ + PGEV+ K++ G+GMP K GNLII F++K P+
Sbjct: 190 WLKVGIVPGEVIAPGMRKVIEGKGMPIPKYG-GYGNLIIKFTIKDPE 235
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Query: 225 DVVHTLYVTMEELYSGAVRKLALEKNVICSVCEGRGGKSKIVEKCSTCKGSGMTVQVQQI 284
D+ H + ++EELY G KLAL K ++C CEGRGGK V+KC++C G G+ +Q+
Sbjct: 13 DIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQM 72
Query: 285 GPGMIQQVQHVCSDCKGQGERINPKDK 311
GP MIQ+ Q C C G G+ I+PKD+
Sbjct: 73 GP-MIQRFQTECDVCHGTGDIIDPKDR 98
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 62/111 (55%), Gaps = 3/111 (2%)
Query: 308 PKDKRVGNNLQMTQNIDLVEALCGFQRYIKTLDGRVIMIEVPGGRGGKSKIVEKCSTCKG 367
P+ + G +++ + L E G R K + I+ + GRGGK V+KC++C G
Sbjct: 5 PRGPQRGKDIKHEISASLEELYKG--RTAKLALNKQILCKECEGRGGKKGAVKKCTSCNG 62
Query: 368 SGMTVQVQQIGPGMIQQVQHVCSDCKGQGERINPKDKCRTCAGKKFSCQAK 418
G+ +Q+GP MIQ+ Q C C G G+ I+PKD+C++C GKK + K
Sbjct: 63 QGIKFVTRQMGP-MIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERK 112
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 27/39 (69%)
Query: 85 RKGKDVVHTLYVTMEELYSGAVRKLALEKNVICSVCEGK 123
++GKD+ H + ++EELY G KLAL K ++C CEG+
Sbjct: 9 QRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGR 47
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 51/66 (77%)
Query: 422 MVKETTFYDILGVKPNCTQDEXXXXXXXXXXXXHPDKNPNEGEKFKQISMAYEVLSNPEK 481
MVKETT+YD+LGVKPN TQ+E HPDKNPNEGEKFKQIS AYEVLS+ +K
Sbjct: 2 MVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKK 61
Query: 482 RELYDQ 487
RELYD+
Sbjct: 62 RELYDK 67
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 31/37 (83%)
Query: 39 KDTAYYDLLGVKPGCSDDELKKAYRTMARKYHPDRDP 75
K+T YYD+LGVKP + +ELKKAYR +A KYHPD++P
Sbjct: 4 KETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNP 40
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 147 STEEETAQVYGSSLFDHIEILIPRFYPQFKEINKAYDVLSNPEKRRVYDQGGEE 200
+T+EE + Y + P +FK+I++AY+VLS+ +KR +YD+GGE+
Sbjct: 18 ATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGEQ 71
>pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGZ|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 190
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 98/178 (55%), Gaps = 11/178 (6%)
Query: 632 IQQIQTVCSE-CRGQGSRINPKDRCKTCNGKKTVRDRKILEVHIDKGMIDQQKIVFNGEG 690
+++I + C++ + R+NP +GK + KIL + + KG + KI F EG
Sbjct: 22 LEEIYSGCTKKMKISHKRLNP-------DGKSIRNEDKILTIEVKKGWKEGTKITFPKEG 74
Query: 691 DQEPGLEHGDIIIVLEEKPHPVFKRSGNNLIIRPYEIALVEALCGFRRPIKTLDDRDIII 750
DQ DI+ VL++KPH +FKR G++ +I P I+L EALCG + TLD R I +
Sbjct: 75 DQTSNNIPADIVFVLKDKPHNIFKRDGSD-VIYPARISLREALCGCTVNVPTLDGRTIPV 133
Query: 751 SAAPGEVMKHSDIKMVVGEGMPTYKDPFEKGNLIIVFSVKFPDVIPVDKVPAIEACLP 808
+V++ + V GEG+P K P ++G+LII F V FP+ IP +E LP
Sbjct: 134 VFK--DVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVLP 189
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 15/128 (11%)
Query: 226 VVHTLYVTMEELYSGAVRKLALEKNVICSVCEGRGGKSKIVE---KCSTCKGSGMTVQVQ 282
V H L V++EE+YSG +K+ + + + + KI+ K +G+ +T +
Sbjct: 14 VTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKE 73
Query: 283 --QIGPGMIQQVQHVCSDCKGQGERINPKD--KRVGNNLQMTQNIDLVEALCGFQRYIKT 338
Q + + V D P + KR G+++ I L EALCG + T
Sbjct: 74 GDQTSNNIPADIVFVLKD--------KPHNIFKRDGSDVIYPARISLREALCGCTVNVPT 125
Query: 339 LDGRVIMI 346
LDGR I +
Sbjct: 126 LDGRTIPV 133
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 81 QQKNRKGKD--VVHTLYVTMEELYSGAVRKLAL 111
Q+ RK +D V H L V++EE+YSG +K+ +
Sbjct: 3 QEPARKKQDPPVTHDLRVSLEEIYSGCTKKMKI 35
>pdb|2QLD|A Chain A, Human Hsp40 Hdj1
Length = 183
Score = 96.3 bits (238), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 98/178 (55%), Gaps = 11/178 (6%)
Query: 632 IQQIQTVCSE-CRGQGSRINPKDRCKTCNGKKTVRDRKILEVHIDKGMIDQQKIVFNGEG 690
+++I + C++ + R+NP +GK + KIL + + KG + KI F EG
Sbjct: 15 LEEIYSGCTKKMKISHKRLNP-------DGKSIRNEDKILTIEVKKGWKEGTKITFPKEG 67
Query: 691 DQEPGLEHGDIIIVLEEKPHPVFKRSGNNLIIRPYEIALVEALCGFRRPIKTLDDRDIII 750
DQ DI+ VL++KPH +FKR G++ +I P I+L EALCG + TLD R I +
Sbjct: 68 DQTSNNIPADIVFVLKDKPHNIFKRDGSD-VIYPARISLREALCGCTVNVPTLDGRTIPV 126
Query: 751 SAAPGEVMKHSDIKMVVGEGMPTYKDPFEKGNLIIVFSVKFPDVIPVDKVPAIEACLP 808
+V++ + V GEG+P K P ++G+LII F V FP+ IP +E LP
Sbjct: 127 VFK--DVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVLP 182
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 15/128 (11%)
Query: 226 VVHTLYVTMEELYSGAVRKLALEKNVICSVCEGRGGKSKIVE---KCSTCKGSGMTVQVQ 282
V H L V++EE+YSG +K+ + + + + KI+ K +G+ +T +
Sbjct: 7 VTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKE 66
Query: 283 --QIGPGMIQQVQHVCSDCKGQGERINPKD--KRVGNNLQMTQNIDLVEALCGFQRYIKT 338
Q + + V D P + KR G+++ I L EALCG + T
Sbjct: 67 GDQTSNNIPADIVFVLKD--------KPHNIFKRDGSDVIYPARISLREALCGCTVNVPT 118
Query: 339 LDGRVIMI 346
LDGR I +
Sbjct: 119 LDGRTIPV 126
>pdb|3AGX|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGX|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGY|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGY|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 181
Score = 95.9 bits (237), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 98/178 (55%), Gaps = 11/178 (6%)
Query: 632 IQQIQTVCSE-CRGQGSRINPKDRCKTCNGKKTVRDRKILEVHIDKGMIDQQKIVFNGEG 690
+++I + C++ + R+NP +GK + KIL + + KG + KI F EG
Sbjct: 13 LEEIYSGCTKKMKISHKRLNP-------DGKSIRNEDKILTIEVKKGWKEGTKITFPKEG 65
Query: 691 DQEPGLEHGDIIIVLEEKPHPVFKRSGNNLIIRPYEIALVEALCGFRRPIKTLDDRDIII 750
DQ DI+ VL++KPH +FKR G++ +I P I+L EALCG + TLD R I +
Sbjct: 66 DQTSNNIPADIVFVLKDKPHNIFKRDGSD-VIYPARISLREALCGCTVNVPTLDGRTIPV 124
Query: 751 SAAPGEVMKHSDIKMVVGEGMPTYKDPFEKGNLIIVFSVKFPDVIPVDKVPAIEACLP 808
+V++ + V GEG+P K P ++G+LII F V FP+ IP +E LP
Sbjct: 125 VFK--DVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVLP 180
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 15/128 (11%)
Query: 226 VVHTLYVTMEELYSGAVRKLALEKNVICSVCEGRGGKSKIVE---KCSTCKGSGMTVQVQ 282
V H L V++EE+YSG +K+ + + + + KI+ K +G+ +T +
Sbjct: 5 VTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKE 64
Query: 283 --QIGPGMIQQVQHVCSDCKGQGERINPKD--KRVGNNLQMTQNIDLVEALCGFQRYIKT 338
Q + + V D P + KR G+++ I L EALCG + T
Sbjct: 65 GDQTSNNIPADIVFVLKD--------KPHNIFKRDGSDVIYPARISLREALCGCTVNVPT 116
Query: 339 LDGRVIMI 346
LDGR I +
Sbjct: 117 LDGRTIPV 124
>pdb|2Q2G|A Chain A, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
pdb|2Q2G|B Chain B, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
Length = 180
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 76/132 (57%), Gaps = 4/132 (3%)
Query: 662 KTVRDRKILEVHIDKGMIDQQKIVFNGEGDQE-PGLEHGDIIIVLEEKPHPVFKRSGNNL 720
K + I+EV I G D K+ ++GEGDQE PG GD++++++ K HP F R +L
Sbjct: 36 KVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHL 95
Query: 721 IIRPYEIALVEALCGFRRPIKTLDDRDIIISAAPGEVMKHSDIKMVVGEGMPTYKDPFEK 780
I + I LV AL GF P+ TLD+R++ I E++ K+V EG P P +K
Sbjct: 96 IXK-VTIPLVRALTGFTCPVTTLDNRNLQIPIK--EIVNPKTRKIVPNEGXPIKNQPGQK 152
Query: 781 GNLIIVFSVKFP 792
G+LI+ F + FP
Sbjct: 153 GDLILEFDICFP 164
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 47/66 (71%)
Query: 422 MVKETTFYDILGVKPNCTQDEXXXXXXXXXXXXHPDKNPNEGEKFKQISMAYEVLSNPEK 481
MVKET +YD+LGVKP+ + +E HPDKNP+ E+FKQIS AYEVLS+ +K
Sbjct: 4 MVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKK 63
Query: 482 RELYDQ 487
R++YDQ
Sbjct: 64 RQIYDQ 69
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 32/37 (86%)
Query: 39 KDTAYYDLLGVKPGCSDDELKKAYRTMARKYHPDRDP 75
K+T YYD+LGVKP SD+ELKKAYR MA K+HPD++P
Sbjct: 6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNP 42
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 26/27 (96%)
Query: 174 QFKEINKAYDVLSNPEKRRVYDQGGEE 200
QFK+I++AY+VLS+ +KR++YDQGGEE
Sbjct: 47 QFKQISQAYEVLSDEKKRQIYDQGGEE 73
>pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1
Length = 170
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 69/124 (55%), Gaps = 4/124 (3%)
Query: 670 LEVHIDKGMIDQQKIVFNGEGDQEPGL-EHGDIIIVLEEKPHPVFKRSGNNLIIRPYEIA 728
+++ + G KI + +GD P + V++EK HP FKR G++LI ++
Sbjct: 38 IDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYT-LPLS 96
Query: 729 LVEALCGFRRPIKTLDDRDIIISAAPGEVMKHSDIKMVVGEGMPTYKDPFEKGNLIIVFS 788
E+L GF + I+T+D R + +S + ++ S G+GMPT K+P ++GNLI+ +
Sbjct: 97 FKESLLGFSKTIQTIDGRTLPLSRV--QPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYK 154
Query: 789 VKFP 792
V +P
Sbjct: 155 VDYP 158
Score = 36.2 bits (82), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 304 ERINPKDKRVGNNLQMTQNIDLVEALCGFQRYIKTLDGRVIMIE 347
E+ +P KR G++L T + E+L GF + I+T+DGR + +
Sbjct: 76 EKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLS 119
>pdb|2B26|A Chain A, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|B Chain B, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|C Chain C, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
Length = 173
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 69/124 (55%), Gaps = 4/124 (3%)
Query: 670 LEVHIDKGMIDQQKIVFNGEGDQEPGL-EHGDIIIVLEEKPHPVFKRSGNNLIIRPYEIA 728
+++ + G KI + +GD P + V++EK HP FKR G++LI ++
Sbjct: 38 IDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYT-LPLS 96
Query: 729 LVEALCGFRRPIKTLDDRDIIISAAPGEVMKHSDIKMVVGEGMPTYKDPFEKGNLIIVFS 788
E+L GF + I+T+D R + +S + ++ S G+GMPT K+P ++GNLI+ +
Sbjct: 97 FKESLLGFSKTIQTIDGRTLPLSRV--QPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYK 154
Query: 789 VKFP 792
V +P
Sbjct: 155 VDYP 158
Score = 36.2 bits (82), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 304 ERINPKDKRVGNNLQMTQNIDLVEALCGFQRYIKTLDGRVIMIE 347
E+ +P KR G++L T + E+L GF + I+T+DGR + +
Sbjct: 76 EKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLS 119
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 69.7 bits (169), Expect = 7e-12, Method: Composition-based stats.
Identities = 32/66 (48%), Positives = 43/66 (65%)
Query: 422 MVKETTFYDILGVKPNCTQDEXXXXXXXXXXXXHPDKNPNEGEKFKQISMAYEVLSNPEK 481
MVKET YD+LGV P+ + E HPDK + EKFK+IS A+E+L++P+K
Sbjct: 4 MVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQK 63
Query: 482 RELYDQ 487
RE+YDQ
Sbjct: 64 REIYDQ 69
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 39 KDTAYYDLLGVKPGCSDDELKKAYRTMARKYHPDRDPKNEDK 80
K+T YDLLGV P ++ ELKK YR A KYHPD+ + +K
Sbjct: 6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEK 47
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 25/28 (89%)
Query: 174 QFKEINKAYDVLSNPEKRRVYDQGGEEA 201
+FKEI++A+++L++P+KR +YDQ G EA
Sbjct: 47 KFKEISEAFEILNDPQKREIYDQYGLEA 74
>pdb|1XAO|A Chain A, Hsp40-Ydj1 Dimerization Domain
pdb|1XAO|B Chain B, Hsp40-Ydj1 Dimerization Domain
Length = 121
Score = 56.2 bits (134), Expect = 7e-08, Method: Composition-based stats.
Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 6/121 (4%)
Query: 713 FKRSGNNLIIRPYEIALVEALCGFRRPIKTLDDRDIIISAAPGEVMKHSDIKMVVGEGMP 772
FKR G++L+ EI L+ A+ G ++ + + + PGEV+ K++ G+GMP
Sbjct: 2 FKRDGDDLVYEA-EIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMP 60
Query: 773 TYKDPFEKGNLIIVFSVKFPD--VIPVDKVPAIEACLPPRPKVTIPENG--EEVVLETMD 828
K GNLII F++KFP+ + + +E LPPR IP+ +E VL D
Sbjct: 61 IPKYG-GYGNLIIKFTIKFPENHFTSEENLKKLEEILPPRIVPAIPKKATVDECVLADFD 119
Query: 829 P 829
P
Sbjct: 120 P 120
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/62 (45%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 428 FYDILGVKPNCTQDEXXXXXXXXXXXXHPDKN--PNEGEKFKQISMAYEVLSNPEKRELY 485
+Y+ILGV + ++ HPDKN P E FK I AY VLSNPEKR+ Y
Sbjct: 9 YYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQY 68
Query: 486 DQ 487
DQ
Sbjct: 69 DQ 70
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/32 (59%), Positives = 27/32 (84%)
Query: 43 YYDLLGVKPGCSDDELKKAYRTMARKYHPDRD 74
YY++LGV G SD++LKKAYR +A K+HPD++
Sbjct: 9 YYEILGVSRGASDEDLKKAYRRLALKFHPDKN 40
Score = 37.4 bits (85), Expect = 0.036, Method: Composition-based stats.
Identities = 17/24 (70%), Positives = 18/24 (75%)
Query: 175 FKEINKAYDVLSNPEKRRVYDQGG 198
FK I AY VLSNPEKR+ YDQ G
Sbjct: 49 FKAIGTAYAVLSNPEKRKQYDQFG 72
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 52.8 bits (125), Expect = 8e-07, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 428 FYDILGVKPNCTQDEXXXXXXXXXXXXHPDKNPNEGE----KFKQISMAYEVLSNPEKRE 483
+Y++LGV+ + + ++ HPDKNP+ E KFK +S AYEVLS+ +KR
Sbjct: 11 YYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRS 70
Query: 484 LYDQ 487
LYD+
Sbjct: 71 LYDR 74
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 34/44 (77%)
Query: 43 YYDLLGVKPGCSDDELKKAYRTMARKYHPDRDPKNEDKQQKNRK 86
YY++LGV+ S +++KKAYR +A ++HPD++P N+++ +K K
Sbjct: 11 YYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFK 54
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 21/25 (84%)
Query: 174 QFKEINKAYDVLSNPEKRRVYDQGG 198
+FK +++AY+VLS+ +KR +YD+ G
Sbjct: 52 KFKLVSEAYEVLSDSKKRSLYDRAG 76
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 427 TFYDILGVKPNCTQDEXXXXXXXXXXXXHPDKNPNEGE----KFKQISMAYEVLSNPEKR 482
++Y+IL V + + D+ HPDKNP+ E KFK+++ AYEVLS+ KR
Sbjct: 3 SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKR 62
Query: 483 ELYDQ 487
E+YD+
Sbjct: 63 EIYDR 67
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 42 AYYDLLGVKPGCSDDELKKAYRTMARKYHPDRDPKNEDKQQKNRK 86
+YY++L V S D++KKAYR A ++HPD++P N++ +K K
Sbjct: 3 SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFK 47
Score = 37.4 bits (85), Expect = 0.037, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 174 QFKEINKAYDVLSNPEKRRVYDQGGEEAINQGGFG 208
+FKE+ +AY+VLS+ KR +YD+ G E + G G
Sbjct: 45 KFKEVAEAYEVLSDKHKREIYDRYGREGLTGTGTG 79
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 49.7 bits (117), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 427 TFYDILGVKPNCTQDEXXXXXXXXXXXXHPDKNPNEGE---KFKQISMAYEVLSNPEKRE 483
+ Y +LG+ N T D+ HPDKNP+ E KFK+I+ A+ +L++ KR
Sbjct: 18 SLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRN 77
Query: 484 LYDQ 487
+YD+
Sbjct: 78 IYDK 81
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 30/47 (63%)
Query: 37 TSKDTAYYDLLGVKPGCSDDELKKAYRTMARKYHPDRDPKNEDKQQK 83
++ + Y +LG+ + D++KK+YR +A KYHPD++P N + K
Sbjct: 13 STSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADK 59
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 169 PRFYPQFKEINKAYDVLSNPEKRRVYDQGG 198
P +FKEIN A+ +L++ KR +YD+ G
Sbjct: 54 PEAADKFKEINNAHAILTDATKRNIYDKYG 83
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 668 KILEVHIDKGMIDQQKIVFNGEGDQ-EPGLEHGDIIIVLEEKPHPVFKRSGNNL-IIRPY 725
K L V I G++D Q+I G+G E G +GD+ +V+ PHP+F G+NL I+ P
Sbjct: 181 KTLNVKIPAGVVDGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLP- 239
Query: 726 EIALVEALCGFRRPIKTLDDRDIIISAAPG 755
+A EA G + + TL + I+++ PG
Sbjct: 240 -LAPWEAALGAKVTVPTLKE-SILLTVPPG 267
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 43 YYDLLGVKPGCSDDELKKAYRTMARKYHPDRDPKNEDKQQKNRKGKDVVHTLYVTMEELY 102
YY +LGV+P +K AYR +ARKYHPD +N+ + K KD+ V +E
Sbjct: 30 YYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEA----KFKDLAEAWEVLKDEQR 85
Query: 103 SGAVRKLALEKN 114
+L +N
Sbjct: 86 RAEYDQLWQHRN 97
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 421 NMVKETTFYDILGVKPNCTQDEXXXXXXXXXXXXHPD-KNPNEGE-KFKQISMAYEVLSN 478
N ++ +Y ILGV+P HPD N+ E KFK ++ A+EVL +
Sbjct: 23 NAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKD 82
Query: 479 PEKRELYDQ 487
++R YDQ
Sbjct: 83 EQRRAEYDQ 91
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 428 FYDILGVKPNCTQDEXXXXXXXXXXXXHPDKN--PNEGEKFKQISMAYEVLSNPEKRELY 485
+Y LG+ + +E HPDKN P EKFK+I+ AY+VLS+P KRE++
Sbjct: 5 YYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIF 64
Query: 486 DQ 487
D+
Sbjct: 65 DR 66
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Query: 43 YYDLLGVKPGCSDDELKKAYRTMARKYHPD--RDPKNEDKQQKNRKGKDVV 91
YY LG+ G SD+E+K+AYR A +YHPD ++P E+K ++ + DV+
Sbjct: 5 YYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVL 55
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 174 QFKEINKAYDVLSNPEKRRVYDQGGEEAINQGG 206
+FKEI +AYDVLS+P KR ++D+ GEE + G
Sbjct: 44 KFKEIAEAYDVLSDPRKREIFDRYGEEGLKGSG 76
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 429 YDILGVKPNCTQDEXXXXXXXXXXXXHPDKNPNEG--EKFKQISMAYEVLSNPEKRELYD 486
Y +LGV +Q + HPDKN + G ++F QIS AYE+LSN EKR YD
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYD 79
Query: 487 Q 487
Sbjct: 80 H 80
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 34 QRKTSKDTAYYDLLGVKPGCSDDELKKAYRTMARKYHPD--RDPKNEDK 80
Q ++ D Y +LGV S ++KKAY+ +AR++HPD +DP ED+
Sbjct: 10 QSLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDR 58
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 174 QFKEINKAYDVLSNPEKRRVYDQGG 198
+F +I+KAY++LSN EKR YD G
Sbjct: 58 RFIQISKAYEILSNEEKRTNYDHYG 82
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 428 FYDILGVKPNCTQDEXXXXXXXXXXXXHPDKN---PNEGEKFKQISMAYEVLSNPEKREL 484
+Y ILGV N +Q E HPD N P EKF Q++ AYEVLS+ KR+
Sbjct: 9 YYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQ 68
Query: 485 YD 486
YD
Sbjct: 69 YD 70
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
Query: 43 YYDLLGVKPGCSDDELKKAYRTMARKYHPDR---DPKNEDK 80
YY +LGV S E+KKAY +A+KYHPD DPK ++K
Sbjct: 9 YYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEK 49
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 428 FYDILGVKPNCTQDEXXXXXXXXXXXXHPDKNPNEGE---KFKQISMAYEVLSNPEKREL 484
+Y+ILGV + E HPD+N + E KFK+I AYEVL++ +KR
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAA 64
Query: 485 YDQ 487
YDQ
Sbjct: 65 YDQ 67
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 34/52 (65%)
Query: 43 YYDLLGVKPGCSDDELKKAYRTMARKYHPDRDPKNEDKQQKNRKGKDVVHTL 94
YY++LGV + E++KAY+ +A KYHPDR+ +++ + K ++ K+ L
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVL 56
Score = 37.0 bits (84), Expect = 0.050, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 174 QFKEINKAYDVLSNPEKRRVYDQGGEEAINQ 204
+FKEI +AY+VL++ +KR YDQ G A Q
Sbjct: 45 KFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQ 75
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 428 FYDILGVKPNCTQDEXXXXXXXXXXXXHPDKNPNEGE---KFKQISMAYEVLSNPEKREL 484
+Y+ILGV + E HPD+N + E KFK+I AYEVL++ +KR
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAA 64
Query: 485 YDQ 487
YDQ
Sbjct: 65 YDQ 67
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 34/52 (65%)
Query: 43 YYDLLGVKPGCSDDELKKAYRTMARKYHPDRDPKNEDKQQKNRKGKDVVHTL 94
YY++LGV + E++KAY+ +A KYHPDR+ +++ + K ++ K+ L
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVL 56
Score = 36.6 bits (83), Expect = 0.056, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 174 QFKEINKAYDVLSNPEKRRVYDQGGEEAINQ 204
+FKEI +AY+VL++ +KR YDQ G A Q
Sbjct: 45 KFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQ 75
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
Ras- Associated Protein Rap1
Length = 90
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/46 (52%), Positives = 32/46 (69%), Gaps = 4/46 (8%)
Query: 36 KTSKDTAYYDLLGVKPGCSDDELKKAYRTMARKYHPDR--DPKNED 79
+ SKD+ +D+LGVKPG S DE+ KAYR +A HPD+ P +ED
Sbjct: 24 RNSKDS--WDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSED 67
Score = 30.8 bits (68), Expect = 3.0, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 429 YDILGVKPNCTQDEXXXXXXXXXXXXHPDK--NPNEGEKFKQISMAYEVL 476
+D+LGVKP ++DE HPDK P + FK + A L
Sbjct: 30 WDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTAL 79
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 428 FYDILGVKPNCTQDEXXXXXXXXXXXXHPDKNPNEGE----KFKQISMAYEVLSNPEKRE 483
+Y++L V + + HPDKNP E +FKQ++ AYEVLS+ +KR+
Sbjct: 11 YYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRD 70
Query: 484 LYDQ 487
+YD+
Sbjct: 71 IYDR 74
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 32/44 (72%)
Query: 43 YYDLLGVKPGCSDDELKKAYRTMARKYHPDRDPKNEDKQQKNRK 86
YY++L V S + +KKAYR +A K+HPD++P+N+++ ++ K
Sbjct: 11 YYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFK 54
Score = 31.2 bits (69), Expect = 2.9, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 21/25 (84%)
Query: 174 QFKEINKAYDVLSNPEKRRVYDQGG 198
+FK++ +AY+VLS+ +KR +YD+ G
Sbjct: 52 RFKQVAEAYEVLSDAKKRDIYDRYG 76
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 46.6 bits (109), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 428 FYDILGVKPNCTQDEXXXXXXXXXXXXHPDKN--PNEGEKFKQISMAYEVLSNPEKRELY 485
+YDILGV + ++ + HPDKN P+ KF++I+ AYE LS+ +R+ Y
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEY 68
Query: 486 D 486
D
Sbjct: 69 D 69
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 43 YYDLLGVKPGCSDDELKKAYRTMARKYHPDRDPKNEDKQQKNRKGKDVVHTL 94
YYD+LGV S+ ++KKA+ +A KYHPD++ K+ D + K R+ + TL
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKN-KSPDAEAKFREIAEAYETL 59
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 169 PRFYPQFKEINKAYDVLSNPEKRRVYDQGGEEAINQG 205
P +F+EI +AY+ LS+ +R+ YD G A G
Sbjct: 43 PDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTSG 79
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 46.2 bits (108), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 428 FYDILGVKPNCTQDEXXXXXXXXXXXXHPDKNPNEGE---KFKQISMAYEVLSNPEKREL 484
+Y+ILGV + E HPD+N + E KFK+I AYEVL++ +KR
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAA 64
Query: 485 YDQ 487
YDQ
Sbjct: 65 YDQ 67
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 34/52 (65%)
Query: 43 YYDLLGVKPGCSDDELKKAYRTMARKYHPDRDPKNEDKQQKNRKGKDVVHTL 94
YY++LGV + E++KAY+ +A KYHPDR+ +++ + K ++ K+ L
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVL 56
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 174 QFKEINKAYDVLSNPEKRRVYDQGGEEAINQGG 206
+FKEI +AY+VL++ +KR YDQ G A QGG
Sbjct: 45 KFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGG 77
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 428 FYDILGVKPNCTQDEXXXXXXXXXXXXHPDKNPNEGE---KFKQISMAYEVLSNPEKREL 484
FY +LGV + E HPDKNPN F +I+ AYEVL + + R+
Sbjct: 4 FYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKK 63
Query: 485 YDQ 487
YD+
Sbjct: 64 YDK 66
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 43 YYDLLGVKPGCSDDELKKAYRTMARKYHPDRDPKNED 79
+Y LLGV S E+++A++ +A K HPD++P N +
Sbjct: 4 FYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPN 40
Score = 37.0 bits (84), Expect = 0.047, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 169 PRFYPQFKEINKAYDVLSNPEKRRVYDQGGEEAI--NQGG 206
P + F +IN+AY+VL + + R+ YD+ GE+ + NQGG
Sbjct: 39 PNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQGG 78
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 43.1 bits (100), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 428 FYDILGVKPNCTQDEXXXXXXXXXXXXHPD--KNPNEGEKFKQISMAYEVLSNPEKRELY 485
+Y I+GVKP HPD K P+ +FK+++ A+EVLS+ ++R Y
Sbjct: 7 YYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEY 66
Query: 486 DQ 487
DQ
Sbjct: 67 DQ 68
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 43 YYDLLGVKPGCSDDELKKAYRTMARKYHPD--RDPKNEDK 80
YY ++GVKP +K AYR +ARKYHPD ++P E +
Sbjct: 7 YYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEAR 46
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 425 ETTFYDILGVKPNCTQDEXXXXXXXXXXXXHPDKNPNEGEK---FKQISMAYEVLSNPEK 481
+ FY +LGV + E HPDKNPN F +I+ AYEVL + +
Sbjct: 20 DQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDL 79
Query: 482 RELYDQ 487
R+ YD+
Sbjct: 80 RKKYDK 85
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 40 DTAYYDLLGVKPGCSDDELKKAYRTMARKYHPDRDPKN 77
D +Y LLGV S E+++A++ +A K HPD++P N
Sbjct: 20 DQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN 57
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 169 PRFYPQFKEINKAYDVLSNPEKRRVYDQGGEEAI--NQGG 206
P + F +IN+AY+VL + + R+ YD+ GE+ + NQGG
Sbjct: 58 PNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQGG 97
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 426 TTFYDILGVKPNCTQDEXXXXXXXXXXXXHPDKNPNE---GEKFKQISMAYEVLSNPEKR 482
T YD+LGV TQ + HPD+N E+F +IS AY VL + R
Sbjct: 17 TALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLR 76
Query: 483 ELYDQ 487
YD+
Sbjct: 77 RKYDR 81
Score = 36.2 bits (82), Expect = 0.085, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 41 TAYYDLLGVKPGCSDDELKKAYRTMARKYHPDRDPKNEDKQQK 83
TA YDLLGV + ++K AY YHPDR+ + + ++
Sbjct: 17 TALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAER 59
>pdb|1EXK|A Chain A, Solution Structure Of The Cysteine-Rich Domain Of The
Escherichia Coli Chaperone Protein Dnaj
Length = 79
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 585 VKKLQLEKNVICDKCEGRGGKKGA-AESCPGCRGTGMTVTVQQFGPGMIQQIQTVCSECR 643
K++++ CD C G G K G ++CP C G+G Q F +Q C C+
Sbjct: 3 TKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGF-----FAVQQTCPHCQ 57
Query: 644 GQGSRINPKDRCKTCNGKKTV 664
G+G+ I KD C C+G V
Sbjct: 58 GRGTLI--KDPCNKCHGHGRV 76
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 36 KTSKDTAYYDLLGVKPGCSDDELKKAYRTMARKYHPD 72
K S+ YY +LGVK E+ KAYR +A ++HPD
Sbjct: 377 KQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 428 FYDILGVKPNCTQDEXXXXXXXXXXXXHPDKNPN------EGEKFKQISMAYEVLSNPEK 481
+Y ILGVK N + E HPD N +KF I+ A EVLS+PE
Sbjct: 384 YYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443
Query: 482 RELYD 486
R+ +D
Sbjct: 444 RKKFD 448
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 38.5 bits (88), Expect = 0.017, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 44 YDLLGVKPGCSDDE-LKKAYRTMARKYHPDRDPKNEDKQQKNRKGKDVVHTLYVTMEE 100
YD+L V D + L KAYR +ARK+HPDR E+K + + V+ T Y T+++
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFR-VIATAYETLKD 74
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 36 KTSKDTAYYDLLGVKPGCSDDELKKAYRTMARKYHPD 72
K S+ YY +LGVK E+ KAYR +A ++HPD
Sbjct: 377 KQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 428 FYDILGVKPNCTQDEXXXXXXXXXXXXHPDKNPN------EGEKFKQISMAYEVLSNPEK 481
+Y ILGVK N + E HPD N +KF I+ A EVLS+PE
Sbjct: 384 YYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEX 443
Query: 482 RELYD 486
R+ +D
Sbjct: 444 RKKFD 448
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C
Menber 12
Length = 112
Score = 35.0 bits (79), Expect = 0.20, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 428 FYDILGVKPNCTQDEXXXXXXXXXXXXHPDK---NPNEGEKFKQISMAYEVLSNPEKREL 484
+Y +LG + ++ HPDK NP E F+++ A E+L+N E R
Sbjct: 22 YYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRAR 81
Query: 485 YDQ 487
YD
Sbjct: 82 YDH 84
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 38 SKDTA-YYDLLGVKPGCSDDELKKAYRTMARKYHPDRDPKNE---DKQQKNRKGKDVV 91
S+DT YY LLG S +++ ++ A + HPD+ P+N + QK +K K+++
Sbjct: 16 SEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEIL 73
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 43 YYDLLGVKPGCSDDELKKAYRTMARKYHPDR 73
+Y +LG P + +LK+ Y+ + YHPD+
Sbjct: 12 WYSILGADPSANISDLKQKYQKLILMYHPDK 42
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 9/68 (13%)
Query: 428 FYDILGVKPNCTQDEXXXXXXXXXXXXHPDKNPNEG---------EKFKQISMAYEVLSN 478
+Y ILG P+ + HPDK + +KF +I A+++L N
Sbjct: 12 WYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGN 71
Query: 479 PEKRELYD 486
E + YD
Sbjct: 72 EETKREYD 79
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 9/68 (13%)
Query: 428 FYDILGVKPNCTQDEXXXXXXXXXXXXHPDKNPNE---------GEKFKQISMAYEVLSN 478
+Y ILG P+ + HPDK + +KF +I A+++L N
Sbjct: 18 WYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGN 77
Query: 479 PEKRELYD 486
E ++ YD
Sbjct: 78 EETKKKYD 85
Score = 30.8 bits (68), Expect = 3.7, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 43 YYDLLGVKPGCSDDELKKAYRTMARKYHPDR 73
+Y +LG P + +LK+ Y+ + YHPD+
Sbjct: 18 WYSILGADPSANMSDLKQKYQKLILLYHPDK 48
>pdb|1IUR|A Chain A, Dnaj Domain Of Human Kiaa0730 Protein
Length = 88
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 55 DDELKKAYRTMARKYHPDRDPKNED 79
+ E KK R + K+HPD++P+N D
Sbjct: 30 ESERKKIIRRLYLKWHPDKNPENHD 54
>pdb|1G0W|A Chain A, Crystal Structure Of Bovine Retinal Creatine Kinase
Length = 380
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 10/117 (8%)
Query: 54 SDDELKKAYRTMARKYHPDRDPKNE---DKQQKNRKGKDVVHTLYVTMEELYSG-AVRKL 109
S D K+ + + H P +E D N +G D + YV + +G ++R
Sbjct: 80 SYDVFKELFDPIIEDRHGGYKPTDEHKTDLNPDNLQGGDDLDPNYVLSSRVRTGRSIRGF 139
Query: 110 ALEKNVICSVCE----GKLFVTCLGKTQGLLGGRAHCLKFVSTEEETAQVYGSSLFD 162
L + CS E KL V L G L GR + LK ++ E+ + LFD
Sbjct: 140 CLPPH--CSRGERRAIEKLAVEALSSLDGDLAGRYYALKSMTEAEQQQLIDDHFLFD 194
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,507,868
Number of Sequences: 62578
Number of extensions: 1023424
Number of successful extensions: 2880
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2708
Number of HSP's gapped (non-prelim): 135
length of query: 858
length of database: 14,973,337
effective HSP length: 107
effective length of query: 751
effective length of database: 8,277,491
effective search space: 6216395741
effective search space used: 6216395741
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)