RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10927
(858 letters)
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5;
beta-strands, chaperone, heat shock, mitochondrion;
2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1
g.54.1.1
Length = 248
Score = 340 bits (874), Expect = e-111
Identities = 108/238 (45%), Positives = 152/238 (63%), Gaps = 3/238 (1%)
Query: 556 GGGRRRRERKGKDVVHQLTVSLEDLYRGTVKKLQLEKNVICDKCEGRGGKKGAAESCPGC 615
G R R ++GKD+ H+++ SLE+LY+G KL L K ++C +CEGRGGKKGA + C C
Sbjct: 1 GAQRPRGPQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSC 60
Query: 616 RGTGMTVTVQQFGPGMIQQIQTVCSECRGQGSRINPKDRCKTCNGKKTVRDRKILEVHID 675
G G+ +Q GP MIQ+ QT C C G G I+PKDRCK+CNGKK +RKILEVH++
Sbjct: 61 NGQGIKFVTRQMGP-MIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVE 119
Query: 676 KGMIDQQKIVFNGEGDQEPGLEHGDIIIVLEEKPHPVFKRSGNNLIIRPYEIALVEALCG 735
GM D Q+IVF GE DQ P + GD++ ++ E+PH FKR G++L+ EI L+ A+ G
Sbjct: 120 PGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYE-AEIDLLTAIAG 178
Query: 736 FRRPIKTLDDRDIIISAAPGEVMKHSDIKMVVGEGMPTYKDPFEKGNLIIVFSVKFPD 793
++ + + + PGEV+ K++ G+GMP K GNLII F++K P+
Sbjct: 179 GEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYG-GYGNLIIKFTIKDPE 235
Score = 139 bits (352), Expect = 3e-37
Identities = 44/98 (44%), Positives = 64/98 (65%), Gaps = 1/98 (1%)
Query: 214 GQQQQKNRKGKDVVHTLYVTMEELYSGAVRKLALEKNVICSVCEGRGGKSKIVEKCSTCK 273
Q+ + ++GKD+ H + ++EELY G KLAL K ++C CEGRGGK V+KC++C
Sbjct: 2 AQRPRGPQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCN 61
Query: 274 GSGMTVQVQQIGPGMIQQVQHVCSDCKGQGERINPKDK 311
G G+ +Q+GP MIQ+ Q C C G G+ I+PKD+
Sbjct: 62 GQGIKFVTRQMGP-MIQRFQTECDVCHGTGDIIDPKDR 98
Score = 96.1 bits (240), Expect = 2e-22
Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 307 NPKDKRVGNNLQMTQNIDLVEALCGFQRYIKTLDGRVIMIEVPGGRGGKSKIVEKCSTCK 366
P+ + G +++ + L E G + + I+ + GRGGK V+KC++C
Sbjct: 4 RPRGPQRGKDIKHEISASLEELYKGRTAKLAL--NKQILCKECEGRGGKKGAVKKCTSCN 61
Query: 367 GSGMTVQVQQIGPGMIQQVQHVCSDCKGQGERINPKDKCRTCAGKK 412
G G+ +Q+GP MIQ+ Q C C G G+ I+PKD+C++C GKK
Sbjct: 62 GQGIKFVTRQMGP-MIQRFQTECDVCHGTGDIIDPKDRCKSCNGKK 106
Score = 61.4 bits (150), Expect = 1e-10
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 81 QQKNRKGKDVVHTLYVTMEELYSGAVRKLALEKNVICSVCEGK 123
+ ++GKD+ H + ++EELY G KLAL K ++C CEG+
Sbjct: 5 PRGPQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGR 47
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens}
PDB: 3agy_A 3agz_A 2qld_A
Length = 181
Score = 230 bits (588), Expect = 9e-71
Identities = 62/182 (34%), Positives = 93/182 (51%), Gaps = 4/182 (2%)
Query: 628 GPGMIQQIQTVCSE-CRGQGSRINPKDRCKTCNGKKTVRDRKILEVHIDKGMIDQQKIVF 686
P + ++ E G ++ + +GK + KIL + + KG + KI F
Sbjct: 2 DPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITF 61
Query: 687 NGEGDQEPGLEHGDIIIVLEEKPHPVFKRSGNNLIIRPYEIALVEALCGFRRPIKTLDDR 746
EGDQ DI+ VL++KPH +FKR G+++I I+L EALCG + TLD R
Sbjct: 62 PKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYP-ARISLREALCGCTVNVPTLDGR 120
Query: 747 DIIISAAPGEVMKHSDIKMVVGEGMPTYKDPFEKGNLIIVFSVKFPDVIPVDKVPAIEAC 806
I + +V++ + V GEG+P K P ++G+LII F V FP+ IP +E
Sbjct: 121 TIPVV--FKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQV 178
Query: 807 LP 808
LP
Sbjct: 179 LP 180
Score = 82.7 bits (205), Expect = 2e-18
Identities = 40/164 (24%), Positives = 60/164 (36%), Gaps = 44/164 (26%)
Query: 226 VVHTLYVTMEELYSGAVRKLALEKNVICSVCEGRGGKSKIVEKCSTCKGSGMTVQVQ--- 282
V H L V++EE+YSG +K+ KI K G + + +
Sbjct: 5 VTHDLRVSLEEIYSGCTKKM------------------KISHKRLNPDGKSIRNEDKILT 46
Query: 283 -QIGPGMIQQVQHVCSDCKG-QGERINPKD-------------KRVGNNLQMTQNIDLVE 327
++ G + + +G Q P D KR G+++ I L E
Sbjct: 47 IEVKKGWKEG-TKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLRE 105
Query: 328 ALCGFQRYIKTLDGRVIMIEVPGG-RGGKSKIVEKCSTCKGSGM 370
ALCG + TLDGR I + R G + V G G+
Sbjct: 106 ALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRKV------PGEGL 143
Score = 35.7 bits (83), Expect = 0.025
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 90 VVHTLYVTMEELYSGAVRKLALEKNVICSVCEGKLFVT 127
V H L V++EE+YSG +K+ + +GK
Sbjct: 5 VTHDLRVSLEEIYSGCTKKMKISHK--RLNPDGKSIRN 40
Score = 34.5 bits (80), Expect = 0.068
Identities = 5/37 (13%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 377 IGPGMIQQVQHVCSD-CKGQGERINPKDKCRTCAGKK 412
+ P + ++ + G +++ K GK
Sbjct: 1 MDPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKS 37
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment);
malaria, structural genomics, structural genomics
consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Length = 180
Score = 213 bits (545), Expect = 1e-64
Identities = 59/164 (35%), Positives = 88/164 (53%), Gaps = 4/164 (2%)
Query: 645 QGSRINPKDRCKTCNGKKTVRDRKILEVHIDKGMIDQQKIVFNGEGDQE-PGLEHGDIII 703
G R K K K + I+EV I G D K+ ++GEGDQE PG GD+++
Sbjct: 19 LGKRKKIKVTRKRFIEHKVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVL 78
Query: 704 VLEEKPHPVFKRSGNNLIIRPYEIALVEALCGFRRPIKTLDDRDIIISAAPGEVMKHSDI 763
+++ K HP F R +LI++ I LV AL GF P+ TLD+R++ I E++
Sbjct: 79 IIQTKTHPRFTRDDCHLIMK-VTIPLVRALTGFTCPVTTLDNRNLQIP--IKEIVNPKTR 135
Query: 764 KMVVGEGMPTYKDPFEKGNLIIVFSVKFPDVIPVDKVPAIEACL 807
K+V EGMP P +KG+LI+ F + FP + ++ I+ L
Sbjct: 136 KIVPNEGMPIKNQPGQKGDLILEFDICFPKSLTPEQKKLIKEAL 179
Score = 77.6 bits (192), Expect = 1e-16
Identities = 41/165 (24%), Positives = 56/165 (33%), Gaps = 39/165 (23%)
Query: 222 KGKDVVHTLYVTMEELYSGAVRKLALEKNVICSVCEGRGGKSKIVEKCSTCKGSGMTVQV 281
+ L VT+EELY G +K+ V K + E V+V
Sbjct: 2 APRSHEVPLLVTLEELYLGKRKKI----KVTRKRF--IEHKVRNEEN---------IVEV 46
Query: 282 QQIGPGMIQQVQHVCSDCKG-QGER-INPKD-------------KRVGNNLQMTQNIDLV 326
+ I PG + + +G Q +P D R +L M I LV
Sbjct: 47 E-IKPGW-KDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIMKVTIPLV 104
Query: 327 EALCGFQRYIKTLDGRVIMIEVPGG-RGGKSKIVEKCSTCKGSGM 370
AL GF + TLD R + I + KIV GM
Sbjct: 105 RALTGFTCPVTTLDNRNLQIPIKEIVNPKTRKIV------PNEGM 143
Score = 39.5 bits (93), Expect = 0.001
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 565 KGKDVVHQLTVSLEDLYRGTVKKLQLEKNVICDKCEGRGGKK 606
+ L V+LE+LY G KK++ V + +
Sbjct: 2 APRSHEVPLLVTLEELYLGKRKKIK----VTRKRFIEHKVRN 39
Score = 34.9 bits (81), Expect = 0.048
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 4/42 (9%)
Query: 86 KGKDVVHTLYVTMEELYSGAVRKLALEKNVICSVCEGKLFVT 127
+ L VT+EELY G +K+ V
Sbjct: 2 APRSHEVPLLVTLEELYLGKRKKI----KVTRKRFIEHKVRN 39
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A
{Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB:
2b26_A
Length = 170
Score = 184 bits (469), Expect = 3e-54
Identities = 43/149 (28%), Positives = 77/149 (51%), Gaps = 4/149 (2%)
Query: 657 TCNGKKTVRDRKILEVHIDKGMIDQQKIVFNGEGDQEPGL-EHGDIIIVLEEKPHPVFKR 715
G ++ +++ + G KI + +GD P + V++EK HP FKR
Sbjct: 25 GRKGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKR 84
Query: 716 SGNNLIIRPYEIALVEALCGFRRPIKTLDDRDIIISAAPGEVMKHSDIKMVVGEGMPTYK 775
G++LI ++ E+L GF + I+T+D R + +S + ++ S G+GMPT K
Sbjct: 85 DGDDLIYT-LPLSFKESLLGFSKTIQTIDGRTLPLS--RVQPVQPSQTSTYPGQGMPTPK 141
Query: 776 DPFEKGNLIIVFSVKFPDVIPVDKVPAIE 804
+P ++GNLI+ + V +P + + AI+
Sbjct: 142 NPSQRGNLIVKYKVDYPISLNDAQKRAID 170
Score = 76.5 bits (189), Expect = 3e-16
Identities = 29/163 (17%), Positives = 58/163 (35%), Gaps = 42/163 (25%)
Query: 224 KDVVHTLYVTMEELYSGAVRKLALEKNVICSVCEGRGGKSKIVEKCSTCKGSGMTVQVQQ 283
+ V L V++E+L+ G + + G + ++ +Q++
Sbjct: 1 ETVQVNLPVSLEDLFVGKKKSF----KIGRKGPHGAS-EKTQID-----------IQLK- 43
Query: 284 IGPGMIQQVQHVCSDCKG-QGERIN-PKD-------------KRVGNNLQMTQNIDLVEA 328
PG + + +G + K KR G++L T + E+
Sbjct: 44 --PGW-KAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFKES 100
Query: 329 LCGFQRYIKTLDGRVIMIEVPGG-RGGKSKIVEKCSTCKGSGM 370
L GF + I+T+DGR + + + ++ G GM
Sbjct: 101 LLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTY------PGQGM 137
Score = 35.7 bits (83), Expect = 0.024
Identities = 7/36 (19%), Positives = 15/36 (41%)
Query: 88 KDVVHTLYVTMEELYSGAVRKLALEKNVICSVCEGK 123
+ V L V++E+L+ G + + + E
Sbjct: 1 ETVQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKT 36
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics,
PSI-2, protein STRU initiative; 2.90A {Klebsiella
pneumoniae subsp} PDB: 2kqx_A
Length = 329
Score = 169 bits (430), Expect = 8e-47
Identities = 78/372 (20%), Positives = 125/372 (33%), Gaps = 107/372 (28%)
Query: 428 FYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG--EKFKQISMAYEVLSNPEKRELY 485
+Y ILGV+P +K AYR+LA KYHPD + KFK ++ A+EVL + ++R Y
Sbjct: 30 YYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEY 89
Query: 486 DQGGYQGGRLWGRRRRLLLPNGYIRDVHGWQFGGRSAAKGEAIKEGGSGGGGGGFSSPMD 545
DQ G+ ++ F D
Sbjct: 90 DQLWQHRND------------------PGFGRQRQT---------HEQSYSQQDFD---D 119
Query: 546 IFEMFMGGSLGGGRRRRERKGKDVVHQLTVSLEDLYRGTVKKLQLEKNVICDKCEGRGGK 605
IF S+ G + +
Sbjct: 120 IFS-----SMFGQQ-----------------------------------------AHQRR 133
Query: 606 KGAAESCPGCRGTGMTVTVQQFGPGMIQQIQTVCSECRGQGSRINPKDRCKTCNGKKTVR 665
+ A + V +++ Q I+ G
Sbjct: 134 RQHAARGHDLEIE-VAVFLEET--------------LAEQTRTISYNLPVYNVFGMIESE 178
Query: 666 DRKILEVHIDKGMIDQQKIVFNGEGDQ-EPGLEHGDIIIVLEEKPHPVFKRSGNNLIIRP 724
K L V I G++D Q+I G+G E G +GD+ +V+ PHP+F G+NL I
Sbjct: 179 TPKTLNVKIPAGVVDGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIV- 237
Query: 725 YEIALVEALCGFRRPIKTLDDR-DIIISA--APGEVMKHSDIKMVVGEGMPTYKDPFEKG 781
+A EA G + + TL + + + G+ ++ IK G+G+ + G
Sbjct: 238 LPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLR---IK---GKGLVSKTHT---G 288
Query: 782 NLIIVFSVKFPD 793
+L V + P
Sbjct: 289 DLFAVIKIVMPT 300
Score = 91.9 bits (229), Expect = 3e-20
Identities = 42/218 (19%), Positives = 79/218 (36%), Gaps = 61/218 (27%)
Query: 175 FKEINKAYDVLSNPEKRRVYDQGGEEAINQGGFGGYH----------------------R 212
FK++ +A++VL + ++R YDQ + + G
Sbjct: 70 FKDLAEAWEVLKDEQRRAEYDQLWQHRNDPGFGRQRQTHEQSYSQQDFDDIFSSMFGQQA 129
Query: 213 RGQQQQKNRKGKDVVHTLYVTMEELYSGAVRKLALEKNVICSVCEGRGGKSKIVEKCSTC 272
+++Q +G D+ + V +EE + R ++ N+ G
Sbjct: 130 HQRRRQHAARGHDLEIEVAVFLEETLAEQTRTISY--NLPVYNVFGMIESET-------- 179
Query: 273 KGSGMTVQVQQIGPGMI--QQVQHVCSDCKGQGE---------------RINPKD--KRV 313
T+ V +I G++ Q+++ KGQG I P V
Sbjct: 180 ---PKTLNV-KIPAGVVDGQRIR-----LKGQGTPGENGGPNGDLWLVIHIAPHPLFDIV 230
Query: 314 GNNLQMTQNIDLVEALCGFQRYIKTLDGRVIMIEVPGG 351
G+NL++ + EA G + + TL + ++ VP G
Sbjct: 231 GHNLEIVLPLAPWEAALGAKVTVPTLKESI-LLTVPPG 267
Score = 67.3 bits (165), Expect = 4e-12
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 39 KDTAYYDLLGVKPGCSDDELKKAYRTMARKYHPDR--DPKNEDK 80
KD YY +LGV+P +K AYR +ARKYHPD + E K
Sbjct: 28 KD--YYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAK 69
Score = 28.8 bits (65), Expect = 7.7
Identities = 5/33 (15%), Positives = 5/33 (15%)
Query: 11 GFFDFGGFDFGGFGGAQQGGAGGQRKTSKDTAY 43
DF FG D
Sbjct: 113 SQQDFDDIFSSMFGQQAHQRRRQHAARGHDLEI 145
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone,
APC90013.2, structural genomics, protein structure
initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Length = 73
Score = 146 bits (370), Expect = 7e-42
Identities = 48/70 (68%), Positives = 62/70 (88%)
Query: 422 MVKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEGEKFKQISMAYEVLSNPEK 481
MVKET +YD+LGVKP+ + +ELKKAYRK+ALK+HPDKNP+ E+FKQIS AYEVLS+ +K
Sbjct: 4 MVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKK 63
Query: 482 RELYDQGGYQ 491
R++YDQGG +
Sbjct: 64 RQIYDQGGEE 73
Score = 77.7 bits (192), Expect = 8e-18
Identities = 26/46 (56%), Positives = 34/46 (73%)
Query: 35 RKTSKDTAYYDLLGVKPGCSDDELKKAYRTMARKYHPDRDPKNEDK 80
K+T YYD+LGVKP SD+ELKKAYR MA K+HPD++P ++
Sbjct: 2 NAMVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQ 47
Score = 55.7 bits (135), Expect = 3e-10
Identities = 17/26 (65%), Positives = 25/26 (96%)
Query: 175 FKEINKAYDVLSNPEKRRVYDQGGEE 200
FK+I++AY+VLS+ +KR++YDQGGEE
Sbjct: 48 FKQISQAYEVLSDEKKRQIYDQGGEE 73
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets,
chaperone; 2.07A {Saccharomyces cerevisiae}
Length = 121
Score = 142 bits (360), Expect = 6e-40
Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 6/121 (4%)
Query: 713 FKRSGNNLIIRPYEIALVEALCGFRRPIKTLDDRDIIISAAPGEVMKHSDIKMVVGEGMP 772
FKR G++L+ EI L+ A+ G ++ + + + PGEV+ K++ G+GMP
Sbjct: 2 FKRDGDDLVYE-AEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMP 60
Query: 773 TYKDPFEKGNLIIVFSVKFPD--VIPVDKVPAIEACLPPRPKVTIPENG--EEVVLETMD 828
K GNLII F++KFP+ + + +E LPPR IP+ +E VL D
Sbjct: 61 IPKYG-GYGNLIIKFTIKFPENHFTSEENLKKLEEILPPRIVPAIPKKATVDECVLADFD 119
Query: 829 P 829
P
Sbjct: 120 P 120
Score = 66.9 bits (164), Expect = 2e-13
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 311 KRVGNNLQMTQNIDLVEALCGFQRYIKTLDGRVIMIEVPGG---RGGKSKIVEKCSTCKG 367
KR G++L IDL+ A+ G + ++ + G + + + G G K++ +G
Sbjct: 3 KRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVI------EG 56
Query: 368 SGM 370
GM
Sbjct: 57 KGM 59
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural
genomics, PSI-2, protein structure initiative; 1.25A
{Saccharomyces cerevisiae}
Length = 92
Score = 138 bits (351), Expect = 4e-39
Identities = 43/72 (59%), Positives = 55/72 (76%)
Query: 421 NMVKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEGEKFKQISMAYEVLSNPE 480
MVKET YD+LGV P+ + ELKK YRK ALKYHPDK + EKFK+IS A+E+L++P+
Sbjct: 3 AMVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQ 62
Query: 481 KRELYDQGGYQG 492
KRE+YDQ G +
Sbjct: 63 KREIYDQYGLEA 74
Score = 74.3 bits (183), Expect = 2e-16
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 39 KDTAYYDLLGVKPGCSDDELKKAYRTMARKYHPDRDPKNEDK 80
K+T YDLLGV P ++ ELKK YR A KYHPD+ + +K
Sbjct: 6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEK 47
Score = 64.3 bits (157), Expect = 7e-13
Identities = 17/36 (47%), Positives = 27/36 (75%)
Query: 174 QFKEINKAYDVLSNPEKRRVYDQGGEEAINQGGFGG 209
+FKEI++A+++L++P+KR +YDQ G EA GG
Sbjct: 47 KFKEISEAFEILNDPQKREIYDQYGLEAARSGGPSF 82
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 77
Score = 121 bits (305), Expect = 4e-33
Identities = 36/73 (49%), Positives = 53/73 (72%), Gaps = 4/73 (5%)
Query: 422 MVKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG--EKFKQISMAYEVLSNP 479
M K+ +Y LG+ + +E+K+AYR+ AL+YHPDKN G EKFK+I+ AY+VLS+P
Sbjct: 1 MGKD--YYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDP 58
Query: 480 EKRELYDQGGYQG 492
KRE++D+ G +G
Sbjct: 59 RKREIFDRYGEEG 71
Score = 67.6 bits (166), Expect = 3e-14
Identities = 20/40 (50%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Query: 43 YYDLLGVKPGCSDDELKKAYRTMARKYHPDR--DPKNEDK 80
YY LG+ G SD+E+K+AYR A +YHPD+ +P E+K
Sbjct: 5 YYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEK 44
Score = 58.7 bits (143), Expect = 4e-11
Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 174 QFKEINKAYDVLSNPEKRRVYDQGGEEAINQGG 206
+FKEI +AYDVLS+P KR ++D+ GEE + G
Sbjct: 44 KFKEIAEAYDVLSDPRKREIFDRYGEEGLKGSG 76
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain,
all helix protein, chaperone, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 118 bits (298), Expect = 7e-32
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 410 GKKFSCQAKRPNMVKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG---EKF 466
G S ++ T YD+LGV TQ ++K AY + YHPD+N E+F
Sbjct: 1 GSSGSSGSQGDCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERF 60
Query: 467 KQISMAYEVLSNPEKRELYDQGGYQG 492
+IS AY VL + R YD+G
Sbjct: 61 TRISQAYVVLGSATLRRKYDRGLLSD 86
Score = 69.8 bits (171), Expect = 8e-15
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 24 GGAQQGGAGGQRKTSKDTAYYDLLGVKPGCSDDELKKAYRTMARKYHPDRDPKNEDKQQK 83
G + G+ G S+ TA YDLLGV + ++K AY YHPDR+ + + ++
Sbjct: 1 GSSGSSGSQGDCSYSR-TALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAER 59
Score = 56.7 bits (137), Expect = 3e-10
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 174 QFKEINKAYDVLSNPEKRRVYDQGGEEAINQGGFGGYHRRG 214
+F I++AY VL + RR YD+G + G G G
Sbjct: 59 RFTRISQAYVVLGSATLRRKYDRGLLSDEDLRGPGSGPSSG 99
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon,
chaperone; NMR {Homo sapiens}
Length = 99
Score = 118 bits (297), Expect = 9e-32
Identities = 35/69 (50%), Positives = 52/69 (75%), Gaps = 4/69 (5%)
Query: 428 FYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEGE----KFKQISMAYEVLSNPEKRE 483
+Y+IL V + + D++KKAYR+ AL++HPDKNP+ E KFK+++ AYEVLS+ KRE
Sbjct: 4 YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE 63
Query: 484 LYDQGGYQG 492
+YD+ G +G
Sbjct: 64 IYDRYGREG 72
Score = 68.1 bits (167), Expect = 3e-14
Identities = 20/48 (41%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 43 YYDLLGVKPGCSDDELKKAYRTMARKYHPDRDPKNEDKQQKNRKGKDV 90
YY++L V S D++KKAYR A ++HPD++P ++K+ +K K+V
Sbjct: 4 YYEILDVPRSASADDIKKAYRRKALQWHPDKNP--DNKEFAEKKFKEV 49
Score = 61.6 bits (150), Expect = 6e-12
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 174 QFKEINKAYDVLSNPEKRRVYDQGGEEAINQGGFGGYHRRG 214
+FKE+ +AY+VLS+ KR +YD+ G E + G G
Sbjct: 45 KFKEVAEAYEVLSDKHKREIYDRYGREGLTGTGTGPSRAEA 85
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 109
Score = 117 bits (296), Expect = 2e-31
Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 410 GKKFSCQAKRPNMVKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNE---GEKF 466
G S +R + Y +LG+ N T D++KK+YRKLALKYHPDKNP+ +KF
Sbjct: 1 GSSGSSGRQRSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKF 60
Query: 467 KQISMAYEVLSNPEKRELYDQGGYQG 492
K+I+ A+ +L++ KR +YD+ G G
Sbjct: 61 KEINNAHAILTDATKRNIYDKYGSLG 86
Score = 68.2 bits (167), Expect = 4e-14
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 29 GGAGGQRKTSKDTA----YYDLLGVKPGCSDDELKKAYRTMARKYHPDRDPKNEDKQQK 83
G +G + + Y +LG+ + D++KK+YR +A KYHPD++P N + K
Sbjct: 1 GSSGSSGRQRSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADK 59
Score = 58.2 bits (141), Expect = 1e-10
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 174 QFKEINKAYDVLSNPEKRRVYDQGGEEAINQGGFGGY 210
+FKEIN A+ +L++ KR +YD+ G + G
Sbjct: 59 KFKEINNAHAILTDATKRNIYDKYGSLGLYVAEQFGE 95
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 82
Score = 115 bits (291), Expect = 3e-31
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 4/69 (5%)
Query: 428 FYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG----EKFKQISMAYEVLSNPEKRE 483
+Y++L V + + +KKAYRKLALK+HPDKNP +FKQ++ AYEVLS+ +KR+
Sbjct: 11 YYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRD 70
Query: 484 LYDQGGYQG 492
+YD+ G
Sbjct: 71 IYDRYGSGP 79
Score = 66.5 bits (163), Expect = 8e-14
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 43 YYDLLGVKPGCSDDELKKAYRTMARKYHPDRDPKNEDKQQKNRKGKDV 90
YY++L V S + +KKAYR +A K+HPD++P E+K++ R+ K V
Sbjct: 11 YYEVLDVPRQASSEAIKKAYRKLALKWHPDKNP--ENKEEAERRFKQV 56
Score = 54.6 bits (132), Expect = 1e-09
Identities = 12/30 (40%), Positives = 22/30 (73%)
Query: 174 QFKEINKAYDVLSNPEKRRVYDQGGEEAIN 203
+FK++ +AY+VLS+ +KR +YD+ G +
Sbjct: 52 RFKQVAEAYEVLSDAKKRDIYDRYGSGPSS 81
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular
chaperone, NPPSFA; NMR {Mus musculus}
Length = 88
Score = 115 bits (290), Expect = 6e-31
Identities = 34/67 (50%), Positives = 45/67 (67%), Gaps = 2/67 (2%)
Query: 428 FYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG--EKFKQISMAYEVLSNPEKRELY 485
Y +LGV +Q ++KKAY+KLA ++HPDKN + G ++F QIS AYE+LSN EKR Y
Sbjct: 19 PYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNY 78
Query: 486 DQGGYQG 492
D G
Sbjct: 79 DHYGSGP 85
Score = 66.2 bits (162), Expect = 1e-13
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 25 GAQQGGAGGQRKTSKDTAYYDLLGVKPGCSDDELKKAYRTMARKYHPDR--DPKNEDK 80
G+ Q ++ D Y +LGV S ++KKAY+ +AR++HPD+ DP ED+
Sbjct: 1 GSSGSSGILQSLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDR 58
Score = 52.8 bits (127), Expect = 6e-09
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 175 FKEINKAYDVLSNPEKRRVYDQGGEEAIN 203
F +I+KAY++LSN EKR YD G +
Sbjct: 59 FIQISKAYEILSNEEKRTNYDHYGSGPSS 87
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 78
Score = 114 bits (287), Expect = 1e-30
Identities = 39/73 (53%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 422 MVKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG--EKFKQISMAYEVLSNP 479
+Y+ILGV + ++LKKAYR+LALK+HPDKN G E FK I AY VLSNP
Sbjct: 3 SGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNP 62
Query: 480 EKRELYDQGGYQG 492
EKR+ YDQ G
Sbjct: 63 EKRKQYDQFGSGP 75
Score = 66.1 bits (162), Expect = 1e-13
Identities = 20/40 (50%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Query: 43 YYDLLGVKPGCSDDELKKAYRTMARKYHPDR--DPKNEDK 80
YY++LGV G SD++LKKAYR +A K+HPD+ P +
Sbjct: 9 YYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEA 48
Score = 52.6 bits (127), Expect = 5e-09
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 174 QFKEINKAYDVLSNPEKRRVYDQGGEEAIN 203
FK I AY VLSNPEKR+ YDQ G +
Sbjct: 48 AFKAIGTAYAVLSNPEKRKQYDQFGSGPSS 77
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix
motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 92
Score = 114 bits (288), Expect = 1e-30
Identities = 35/80 (43%), Positives = 53/80 (66%), Gaps = 5/80 (6%)
Query: 417 AKRPNMVKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG----EKFKQISMA 472
+ +Y++LGV+ + + +++KKAYRKLAL++HPDKNP+ +KFK +S A
Sbjct: 1 GSSGSSGMAN-YYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEA 59
Query: 473 YEVLSNPEKRELYDQGGYQG 492
YEVLS+ +KR LYD+ G
Sbjct: 60 YEVLSDSKKRSLYDRAGCDS 79
Score = 66.9 bits (164), Expect = 7e-14
Identities = 22/58 (37%), Positives = 39/58 (67%), Gaps = 2/58 (3%)
Query: 33 GQRKTSKDTAYYDLLGVKPGCSDDELKKAYRTMARKYHPDRDPKNEDKQQKNRKGKDV 90
G +S YY++LGV+ S +++KKAYR +A ++HPD++P ++K++ +K K V
Sbjct: 1 GSSGSSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNP--DNKEEAEKKFKLV 56
Score = 61.6 bits (150), Expect = 6e-12
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 175 FKEINKAYDVLSNPEKRRVYDQGGEEAINQGGFGGYHRRG 214
FK +++AY+VLS+ +KR +YD+ G ++ GG G
Sbjct: 53 FKLVSEAYEVLSDSKKRSLYDRAGCDSWRAGGGASGPSSG 92
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR
{Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Length = 103
Score = 115 bits (290), Expect = 1e-30
Identities = 44/130 (33%), Positives = 60/130 (46%), Gaps = 35/130 (26%)
Query: 428 FYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG---EKFKQISMAYEVLSNPEKREL 484
+Y+ILGV + E++KAY++LA+KYHPD+N + KFK+I AYEVL++ +KR
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAA 64
Query: 485 YDQGGYQGGRLWGRRRRLLLPNGYIRDVHGWQFGGRSAAKGEAIKEGGSGGGGGGFSSPM 544
YDQ G+ F GG GGG FS
Sbjct: 65 YDQYGHAA------------------------FEQGGMG-------GGGFGGGADFSDIF 93
Query: 545 -DIFEMFMGG 553
D+F GG
Sbjct: 94 GDVFGDIFGG 103
Score = 66.1 bits (162), Expect = 2e-13
Identities = 17/41 (41%), Positives = 29/41 (70%)
Query: 43 YYDLLGVKPGCSDDELKKAYRTMARKYHPDRDPKNEDKQQK 83
YY++LGV + E++KAY+ +A KYHPDR+ +++ + K
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAK 45
Score = 58.0 bits (141), Expect = 1e-10
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 174 QFKEINKAYDVLSNPEKRRVYDQGGEEAINQGGFGG 209
+FKEI +AY+VL++ +KR YDQ G A QGG GG
Sbjct: 45 KFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGG 80
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain,
chaperone; NMR {Homo sapiens}
Length = 155
Score = 115 bits (290), Expect = 4e-30
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 421 NMVKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG---------EKFKQISM 471
M K+ +Y ILG P+ +LK+ Y+KL L YHPDK + +KF +I
Sbjct: 6 QMPKKD-WYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQ 64
Query: 472 AYEVLSNPEKRELYDQGGYQGGR 494
A+++L N E + YD +
Sbjct: 65 AWKILGNEETKREYDLQRCEDDL 87
Score = 66.0 bits (161), Expect = 8e-13
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 43 YYDLLGVKPGCSDDELKKAYRTMARKYHPDRDPKNEDKQQK 83
+Y +LG P + +LK+ Y+ + YHPD+ +
Sbjct: 12 WYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTV 52
Score = 54.8 bits (132), Expect = 6e-09
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 174 QFKEINKAYDVLSNPEKRRVYDQGGEEAINQGGFGG 209
+F EI++A+ +L N E +R YD E +
Sbjct: 58 KFIEIDQAWKILGNEETKREYDLQRCEDDLRNVGPV 93
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, chaperone; NMR {Mus musculus} SCOP:
a.2.3.1
Length = 94
Score = 112 bits (281), Expect = 9e-30
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 410 GKKFSCQAKRPNMVKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG------ 463
G S +K+ +Y ILG P+ +LK+ Y+KL L YHPDK +
Sbjct: 1 GSSGSSGMALEQTLKKD-WYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTME 59
Query: 464 ---EKFKQISMAYEVLSNPEKRELYDQGGYQGG 493
+KF +I A+++L N E ++ YD
Sbjct: 60 ECMQKFIEIDQAWKILGNEETKKKYDLQRSGPS 92
Score = 67.8 bits (166), Expect = 4e-14
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 24 GGAQQGGAGGQRKTSKDTAYYDLLGVKPGCSDDELKKAYRTMARKYHPDRDPKNEDKQQK 83
G + G ++ KD +Y +LG P + +LK+ Y+ + YHPD+ +
Sbjct: 1 GSSGSSGMALEQTLKKD--WYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTM 58
Score = 50.1 bits (120), Expect = 5e-08
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Query: 175 FKEINKAYDVLSNPEKRRVYDQGGEEAINQGGFGG 209
F EI++A+ +L N E ++ YD G G
Sbjct: 65 FIEIDQAWKILGNEETKKKYDLQR-----SGPSSG 94
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 116 bits (292), Expect = 9e-30
Identities = 36/147 (24%), Positives = 55/147 (37%), Gaps = 36/147 (24%)
Query: 428 FYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG---EKFKQISMAYEVLSNPEKREL 484
FY +LGV + E+++A++KLALK HPDKNPN F +I+ AYEVL + + R+
Sbjct: 4 FYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKK 63
Query: 485 YDQGGYQGGRLWGRRRRLLLPNGYIRDVHGWQFGGRSAAKGEAIKEGGSGGGGGGFSSPM 544
YD+ G +G L + GG +
Sbjct: 64 YDKYGEKG-----------LEDNQ----------------------GGQYESWSYYRYDF 90
Query: 545 DIFEMFMGGSLGGGRRRRERKGKDVVH 571
I++ R +
Sbjct: 91 GIYDDDPEIITLERREFDAAVNSGELW 117
Score = 69.9 bits (171), Expect = 1e-13
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 43 YYDLLGVKPGCSDDELKKAYRTMARKYHPDRDPKNEDKQQK 83
+Y LLGV S E+++A++ +A K HPD++P N +
Sbjct: 4 FYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGD 44
Score = 64.5 bits (157), Expect = 7e-12
Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 3/85 (3%)
Query: 175 FKEINKAYDVLSNPEKRRVYDQGGEEAINQGGFGGYHR---RGQQQQKNRKGKDVVHTLY 231
F +IN+AY+VL + + R+ YD+ GE+ + G Y +++
Sbjct: 45 FLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLER 104
Query: 232 VTMEELYSGAVRKLALEKNVICSVC 256
+ + + CS C
Sbjct: 105 REFDAAVNSGELWFVNFYSPGCSHC 129
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 111 bits (280), Expect = 1e-29
Identities = 35/68 (51%), Positives = 45/68 (66%), Gaps = 3/68 (4%)
Query: 428 FYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG---EKFKQISMAYEVLSNPEKREL 484
+Y ILGV N +Q E+KKAY +LA KYHPD N ++ EKF Q++ AYEVLS+ KR+
Sbjct: 9 YYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQ 68
Query: 485 YDQGGYQG 492
YD G
Sbjct: 69 YDAYGSGP 76
Score = 67.3 bits (165), Expect = 4e-14
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 43 YYDLLGVKPGCSDDELKKAYRTMARKYHPDRDPKNEDKQQK 83
YY +LGV S E+KKAY +A+KYHPD + + ++K
Sbjct: 9 YYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEK 49
Score = 49.6 bits (119), Expect = 6e-08
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 175 FKEINKAYDVLSNPEKRRVYDQGGEEAIN 203
F ++ +AY+VLS+ KR+ YD G +
Sbjct: 50 FSQLAEAYEVLSDEVKRKQYDAYGSGPSS 78
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein;
3.20A {Simian virus 40} SCOP: a.2.3.1
Length = 114
Score = 112 bits (281), Expect = 2e-29
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 421 NMVKETT-FYDILGVKPNCTQD--ELKKAYRKLALKYHPDKNPNEGEKFKQISMAYEVLS 477
+M +E+ D+LG++ + + ++KAY K ++HPDK +E EK K+++ Y+ +
Sbjct: 2 HMREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE-EKMKKMNTLYKKME 60
Query: 478 NPEKRELYDQGGYQG 492
+ K G
Sbjct: 61 DGVKYAHQPDFGGFW 75
Score = 59.8 bits (145), Expect = 4e-11
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 35 RKTSKDTAYYDLLGVKPGCSDD--ELKKAYRTMARKYHPDRDPKNEDK 80
R+ S DLLG++ + ++KAY +++HPD+ +E+K
Sbjct: 4 REESLQ--LMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGG-DEEK 48
Score = 52.9 bits (127), Expect = 1e-08
Identities = 5/37 (13%), Positives = 9/37 (24%)
Query: 175 FKEINKAYDVLSNPEKRRVYDQGGEEAINQGGFGGYH 211
K++N Y + + K G
Sbjct: 49 MKKMNTLYKKMEDGVKYAHQPDFGGFWDATEIPTYGT 85
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 88
Score = 110 bits (276), Expect = 4e-29
Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 2/74 (2%)
Query: 421 NMVKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG--EKFKQISMAYEVLSN 478
+ ++YDILGV + ++ ++KKA+ KLA+KYHPDKN + KF++I+ AYE LS+
Sbjct: 2 SSGSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSD 61
Query: 479 PEKRELYDQGGYQG 492
+R+ YD G+
Sbjct: 62 ANRRKEYDTLGHSA 75
Score = 64.6 bits (158), Expect = 4e-13
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 43 YYDLLGVKPGCSDDELKKAYRTMARKYHPDR--DPKNEDK 80
YYD+LGV S+ ++KKA+ +A KYHPD+ P E K
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAK 48
Score = 56.9 bits (138), Expect = 2e-10
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 174 QFKEINKAYDVLSNPEKRRVYDQGGEEAINQGGFGGYHRRG 214
+F+EI +AY+ LS+ +R+ YD G A G G
Sbjct: 48 KFREIAEAYETLSDANRRKEYDTLGHSAFTSGKGQSGPSSG 88
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 112
Score = 111 bits (278), Expect = 5e-29
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 428 FYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG---EKFKQISMAYEVLSNPEKREL 484
+Y +LG + +++ ++ AL+ HPDK+P E F+++ A E+L+N E R
Sbjct: 22 YYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRAR 81
Query: 485 YDQGGYQG 492
YD
Sbjct: 82 YDHWRRSQ 89
Score = 65.5 bits (160), Expect = 3e-13
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 43 YYDLLGVKPGCSDDELKKAYRTMARKYHPDRDPKNEDKQQK 83
YY LLG S +++ ++ A + HPD+ P+N +
Sbjct: 22 YYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVET 62
Score = 54.4 bits (131), Expect = 4e-09
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 174 QFKEINKAYDVLSNPEKRRVYDQGGEEAINQGGFGG 209
F+++ KA ++L+N E R YD ++
Sbjct: 62 TFQKLQKAKEILTNEESRARYDHWRRSQMSMPFQQW 97
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated
protein RAP1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 90
Score = 107 bits (269), Expect = 4e-28
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 422 MVKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG--EKFKQISMAYEVLSNP 479
+ +D+LGVKP ++DE+ KAYRKLA+ HPDK G + FK + A L
Sbjct: 23 IRNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKN 82
Query: 480 EKRELYD 486
K
Sbjct: 83 IKSGPSS 89
Score = 65.5 bits (160), Expect = 2e-13
Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 36 KTSKDTAYYDLLGVKPGCSDDELKKAYRTMARKYHPDR--DPKNEDK 80
+ SKD +D+LGVKPG S DE+ KAYR +A HPD+ P +ED
Sbjct: 24 RNSKD--SWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDA 68
Score = 41.2 bits (97), Expect = 7e-05
Identities = 5/21 (23%), Positives = 6/21 (28%)
Query: 175 FKEINKAYDVLSNPEKRRVYD 195
FK + A L K
Sbjct: 69 FKAVVNARTALLKNIKSGPSS 89
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural
genomics, PSI-2, Pro structure initiative; 1.68A
{Caenorhabditis elegans}
Length = 109
Score = 107 bits (268), Expect = 1e-27
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 428 FYDILGVKPN-CTQDELKKAYRKLALKYHPDKNPNEG------EKFKQISMAYEVLSNPE 480
YD+L V + +L KAYR LA K+HPD+ N+ E+F+ I+ AYE L + E
Sbjct: 17 CYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDE 76
Query: 481 KRELYDQGGYQGG 493
+ YD
Sbjct: 77 AKTNYDYYLDHPD 89
Score = 65.9 bits (161), Expect = 3e-13
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 43 YYDLLGV-KPGCSDDELKKAYRTMARKYHPDRDPKNEDKQQKNRKGKDV 90
YD+L V + +L KAYR +ARK+HPDR E+K + + +
Sbjct: 17 CYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVI 65
Score = 55.1 bits (133), Expect = 2e-09
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 174 QFKEINKAYDVLSNPEKRRVYDQGGEEAINQG-GFGGYHRR 213
+F+ I AY+ L + E + YD + + + Y+R
Sbjct: 61 RFRVIATAYETLKDDEAKTNYDYYLDHPDQRFYNYYQYYRL 101
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase
regulat protein complex; 3.10A {Simian virus 40} PDB:
2pkg_C
Length = 174
Score = 108 bits (270), Expect = 3e-27
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 418 KRPNMVKETTFYDILGVKPNCTQD--ELKKAYRKLALKYHPDKNPNEGEKFKQISMAYEV 475
K N + D+LG++ + + ++KAY K ++HPDK +E EK K+++ Y+
Sbjct: 3 KVLNREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE-EKMKKMNTLYKK 61
Query: 476 LSNPEKRELYDQGGYQG 492
+ + K G
Sbjct: 62 MEDGVKYAHQPDFGGFW 78
Score = 59.5 bits (144), Expect = 2e-10
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 36 KTSKDTAYYDLLGVKPGCSDD--ELKKAYRTMARKYHPDRDPKNEDK 80
+ DLLG++ + ++KAY +++HPD+ +E+K
Sbjct: 6 NREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGG-DEEK 51
Score = 52.2 bits (125), Expect = 6e-08
Identities = 6/36 (16%), Positives = 10/36 (27%)
Query: 175 FKEINKAYDVLSNPEKRRVYDQGGEEAINQGGFGGY 210
K++N Y + + K G F
Sbjct: 52 MKKMNTLYKKMEDGVKYAHQPDFGGFWDATEVFASS 87
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 88
Score = 102 bits (256), Expect = 2e-26
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 428 FYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNE----GEKFKQISMAYEVLSNPEKRE 483
++ + E KK R+L LK+HPDKNP E FK + L EK+
Sbjct: 18 VTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRL---EKQA 74
Query: 484 LYDQGGYQG 492
DQ +
Sbjct: 75 FLDQNADRA 83
Score = 64.0 bits (156), Expect = 8e-13
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 43 YYDLLGVKPGCSDDELKKAYRTMARKYHPDRDPKNEDKQQK 83
++ + E KK R + K+HPD++P+N D +
Sbjct: 18 VTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANE 58
Score = 43.5 bits (103), Expect = 1e-05
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 174 QFKEINKAYDVLSNPEKRRVYDQGGEEAINQG 205
FK + + L EK+ DQ + A +
Sbjct: 59 VFKHLQNEINRL---EKQAFLDQNADRASRRT 87
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 108 bits (271), Expect = 2e-24
Identities = 44/213 (20%), Positives = 71/213 (33%), Gaps = 31/213 (14%)
Query: 399 INPKDKCRTCAGKKFSCQAKRPNMVKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDK 458
+ + + + FY +LGV + E+++A++KLALK HPDK
Sbjct: 1 MGSSHHHHHHSSGHIEGRHDQ-------NFYSLLGVSKTASSREIRQAFKKLALKLHPDK 53
Query: 459 NPNEGE---KFKQISMAYEVLSNPEKRELYDQGGYQGGRLWGRRRRLLLPNGYIRDVHGW 515
NPN F +I+ AYEVL + + R+ YD+ G +G G +
Sbjct: 54 NPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDN--------QGGQYESWSYY 105
Query: 516 QFGGRSAAKGEAIKEGGSGGGGGGFSSPMDIFEMFMGGSLGGGRRRRERKGKDVVHQLTV 575
++ I +S F F G H L
Sbjct: 106 RYDFGIYDDDPEIITLERREFDAAVNSGELWFVNFY------------SPGSSHSHDLAP 153
Query: 576 SLEDLYRGTVKKLQLEKNVICDKCEGRGGKKGA 608
+ + + L++ V C KG
Sbjct: 154 TWREFAKEVDGLLRIGA-VNCGDDRMLCRMKGV 185
Score = 69.8 bits (170), Expect = 2e-12
Identities = 19/63 (30%), Positives = 30/63 (47%)
Query: 32 GGQRKTSKDTAYYDLLGVKPGCSDDELKKAYRTMARKYHPDRDPKNEDKQQKNRKGKDVV 91
G + D +Y LLGV S E+++A++ +A K HPD++P N + K
Sbjct: 12 SGHIEGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAY 71
Query: 92 HTL 94
L
Sbjct: 72 EVL 74
Score = 42.4 bits (99), Expect = 6e-04
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 174 QFKEINKAYDVLSNPEKRRVYDQGGEEA--INQGGFGGYHRRGQQQQKNRKGKDVVHTLY 231
F +IN+AY+VL + + R+ YD+ GE+ NQGG + + TL
Sbjct: 63 DFLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLE 122
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 99.0 bits (247), Expect = 5e-22
Identities = 35/67 (52%), Positives = 44/67 (65%), Gaps = 6/67 (8%)
Query: 428 FYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEGE------KFKQISMAYEVLSNPEK 481
+Y ILGVK N + E+ KAYRKLAL++HPD NE E KF I+ A EVLS+PE
Sbjct: 384 YYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443
Query: 482 RELYDQG 488
R+ +D G
Sbjct: 444 RKKFDDG 450
Score = 55.1 bits (133), Expect = 7e-08
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 34 QRKTSKDTAYYDLLGVKPGCSDDELKKAYRTMARKYHPDRDPKNEDKQQKNRKGKDV 90
K S+ YY +LGVK E+ KAYR +A ++HPD E+K++ +K D+
Sbjct: 375 LLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDI 431
Score = 48.5 bits (116), Expect = 6e-06
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 174 QFKEINKAYDVLSNPEKRRVYDQG 197
+F +I A +VLS+PE R+ +D G
Sbjct: 427 KFIDIAAAKEVLSDPEMRKKFDDG 450
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 104
Score = 83.4 bits (207), Expect = 2e-19
Identities = 25/108 (23%), Positives = 41/108 (37%), Gaps = 8/108 (7%)
Query: 566 GKDVVHQLTVSLEDLYRGTVKKLQLEKNVICDKCEGRGGKKGA-AESCPGCRGTGMTVTV 624
G + ++ +G K+ + C++C G+G + G + C C G+G T+
Sbjct: 1 GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSG-METI 59
Query: 625 QQFGPGMIQQIQTVCSECRGQGSRINPKDRCKTCNGKKTVRDRKILEV 672
G T C C G+GS I C C G + +K
Sbjct: 60 NT---GPFVMRST-CRRCGGRGSII--ISPCVVCRGAGQAKQKKRSGP 101
Score = 55.3 bits (134), Expect = 1e-09
Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 6/85 (7%)
Query: 223 GKDVVHTLYVTMEELYSGAVRKLALEKNVICSVCEGRGGKS-KIVEKCSTCKGSGMTVQV 281
G + +T + G ++ + C C G+G + V+ C C GSG +
Sbjct: 1 GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSG-METI 59
Query: 282 QQIGPGMIQQVQHVCSDCKGQGERI 306
G C C G+G I
Sbjct: 60 NT---GPFVMRS-TCRRCGGRGSII 80
Score = 45.3 bits (108), Expect = 4e-06
Identities = 18/114 (15%), Positives = 27/114 (23%), Gaps = 40/114 (35%)
Query: 314 GNNLQMTQNIDLVEALCGFQRYIKTLDGRVIMIEVPGGRGGKSKIVEKCSTCKGSGM--- 370
G++ + +A G + V I++ C C G G
Sbjct: 1 GSSGSSGMELTFNQAAKGVNK----------EFTVN--------IMDTCERCNGKGNEPG 42
Query: 371 -------------TVQVQQIGPGMIQQVQHVCSDCKGQGERINPKDKCRTCAGK 411
+ G C C G+G I C C G
Sbjct: 43 TKVQHCHYCGGSGMETINT---GPFVMRS-TCRRCGGRGSII--ISPCVVCRGA 90
Score = 30.2 bits (69), Expect = 0.73
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 253 CSVCEGRGGKSKIVEKCSTCKGSG 276
C C GRG S I+ C C+G+G
Sbjct: 70 CRRCGGRG--SIIISPCVVCRGAG 91
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Length = 181
Score = 84.6 bits (209), Expect = 5e-19
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 426 TTFYDILGVKPNCT-------QDELKKAYRKLALKYHPDKNPNEGEKFKQISMAYEVLSN 478
+TFY++ Q L+K YR+L ++HPD E+ ++ AY L +
Sbjct: 11 STFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKD 70
Query: 479 PEKRELYDQGGYQGGRLWG 497
P +R Y + L
Sbjct: 71 PLRRSQYMLKLLRNIDLTQ 89
Score = 50.0 bits (119), Expect = 5e-07
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 9/57 (15%)
Query: 34 QRKTSKDTAYYDLLGVKPGC-------SDDELKKAYRTMARKYHPDRDPKNEDKQQK 83
QR+ + +Y+L L+K YR + ++HPD + ++
Sbjct: 6 QRRFTST--FYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSST 60
Score = 43.0 bits (101), Expect = 1e-04
Identities = 9/43 (20%), Positives = 15/43 (34%)
Query: 174 QFKEINKAYDVLSNPEKRRVYDQGGEEAINQGGFGGYHRRGQQ 216
Q +N+AY L +P +R Y I+ +
Sbjct: 57 QSSTLNQAYHTLKDPLRRSQYMLKLLRNIDLTQEQTSNEVTTS 99
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of
helices, viral protein; NMR {Murine polyomavirus} SCOP:
a.2.3.1
Length = 79
Score = 76.9 bits (189), Expect = 2e-17
Identities = 11/68 (16%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 424 KETTFYDILGVKPNCTQD--ELKKAYRKLALKYHPDKNPNEGEKFKQISMAYEVLSNPEK 481
+ ++L + D +++AY++ +L HPDK + ++++ +
Sbjct: 9 DKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSH-ALMQELNSLWGTFKTEVY 67
Query: 482 RELYDQGG 489
+ GG
Sbjct: 68 NLRMNLGG 75
Score = 46.5 bits (110), Expect = 9e-07
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 36 KTSKDTAYYDLLGVKPGCSDD--ELKKAYRTMARKYHPDR 73
+ +LL + D +++AY+ + HPD+
Sbjct: 6 SRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDK 45
Score = 34.9 bits (80), Expect = 0.010
Identities = 4/25 (16%), Positives = 8/25 (32%)
Query: 174 QFKEINKAYDVLSNPEKRRVYDQGG 198
+E+N + + GG
Sbjct: 51 LMQELNSLWGTFKTEVYNLRMNLGG 75
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304,
center for structural genomics of infectious diseases,
CSGI; 2.15A {Vibrio cholerae}
Length = 174
Score = 76.9 bits (189), Expect = 2e-16
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 10/73 (13%)
Query: 424 KETTFYDILGVKPNCTQD--ELKKAYRKLALKYHPDKNPNEGE--------KFKQISMAY 473
++++ G+ D L +R L ++HPD E + QI+ AY
Sbjct: 2 NAMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAY 61
Query: 474 EVLSNPEKRELYD 486
+ L +P +R Y
Sbjct: 62 QTLKDPLRRAEYL 74
Score = 56.5 bits (136), Expect = 2e-09
Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 38 SKDTAYYDLLGVKPGCSDD--ELKKAYRTMARKYHPDRDPKNEDKQQKN 84
S Y++L G+ D L +R + +++HPD ++ +
Sbjct: 1 SNAMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLM 49
Score = 37.6 bits (87), Expect = 0.006
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 174 QFKEINKAYDVLSNPEKRRVYD 195
Q +IN AY L +P +R Y
Sbjct: 53 QAAQINDAYQTLKDPLRRAEYL 74
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A
{Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Length = 171
Score = 76.2 bits (187), Expect = 4e-16
Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 10/69 (14%)
Query: 428 FYDILGVKPNCTQD--ELKKAYRKLALKYHPDKNPNEGE--------KFKQISMAYEVLS 477
++ + G+ D L ++ L +YHPDK + + + I+ A++ L
Sbjct: 3 YFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLR 62
Query: 478 NPEKRELYD 486
+P R Y
Sbjct: 63 HPLMRAEYL 71
Score = 54.6 bits (131), Expect = 1e-08
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 43 YYDLLGVKPGCSDD--ELKKAYRTMARKYHPDRDPKNEDKQQK 83
Y+ L G+ D L ++ + R+YHPD+ +Q
Sbjct: 3 YFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQL 45
Score = 38.4 bits (89), Expect = 0.004
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 174 QFKEINKAYDVLSNPEKRRVYD 195
Q IN+A+ L +P R Y
Sbjct: 50 QSATINQAWQTLRHPLMRAEYL 71
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP:
a.2.3.1 PDB: 1xi5_J
Length = 182
Score = 74.9 bits (183), Expect = 1e-15
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 429 YDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEGEK------FKQISMAYEVLSNPEKR 482
+ +G+ T +++KK YRK L HPDK + + F +++ A+ N ++
Sbjct: 120 WKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQK 179
Query: 483 ELY 485
LY
Sbjct: 180 PLY 182
Score = 43.7 bits (102), Expect = 7e-05
Identities = 9/45 (20%), Positives = 18/45 (40%)
Query: 42 AYYDLLGVKPGCSDDELKKAYRTMARKYHPDRDPKNEDKQQKNRK 86
+ +G+ + +++KK YR HPD+ +Q
Sbjct: 118 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMI 162
Score = 39.1 bits (90), Expect = 0.002
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 175 FKEINKAYDVLSNPEKRRVY 194
F E+N A+ N ++ +Y
Sbjct: 163 FMELNDAWSEFENQGQKPLY 182
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural
genomics medical relev protein structure initiative,
PSI-2; 3.00A {Homo sapiens}
Length = 207
Score = 69.8 bits (170), Expect = 1e-13
Identities = 24/112 (21%), Positives = 37/112 (33%), Gaps = 19/112 (16%)
Query: 386 QHVCSDCKGQGERINPKDK-CRTCAGKKFSCQAKRPNMVKETTFYDILGVKPNCTQD--E 442
C +C G C C + QA P ++ ++ + D +
Sbjct: 10 YPRCWNCGGPWGPGREDRFFCPQCR----ALQAPDPTR----DYFSLMDCNRSFRVDTAK 61
Query: 443 LKKAYRKLALKYHPDKNPNEGEKFKQISM--------AYEVLSNPEKRELYD 486
L+ Y++L HPD + K S AY+ L P R LY
Sbjct: 62 LQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYL 113
Score = 43.9 bits (103), Expect = 7e-05
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 38 SKDTAYYDLLGVKPGCSDD--ELKKAYRTMARKYHPDRDPKNEDKQQK 83
Y+ L+ D +L+ Y+ + R HPD + ++
Sbjct: 40 DPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKD 87
Score = 36.2 bits (83), Expect = 0.024
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 174 QFKEINKAYDVLSNPEKRRVYD 195
+N AY L P R +Y
Sbjct: 92 HSTLVNDAYKTLLAPLSRGLYL 113
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif,
chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Length = 79
Score = 65.4 bits (160), Expect = 2e-13
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 583 GTVKKLQLEKNVICDKCEGRGGKKG-AAESCPGCRGTGMTVTVQQFGPGMIQQIQTVCSE 641
G K++++ CD C G G K G ++CP C G+G V ++Q G QT C
Sbjct: 1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSG-QVQMRQ---GFFAVQQT-CPH 55
Query: 642 CRGQGSRINPKDRCKTCNGKKTVR 665
C+G+G+ I KD C C+G V
Sbjct: 56 CQGRGTLI--KDPCNKCHGHGRVE 77
Score = 45.7 bits (109), Expect = 2e-06
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 359 VEKCSTCKGSGMTVQVQQIGPGMIQQVQHVCSDCKGQGERINPKDKCRTCAGK 411
+ C TC GSG VQ++Q G VQ C C+G+G I KD C C G
Sbjct: 28 PQTCPTCHGSG-QVQMRQ---GFFA-VQQTCPHCQGRGTLI--KDPCNKCHGH 73
Score = 44.6 bits (106), Expect = 4e-06
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 240 GAVRKLALEKNVICSVCEGRGGKS-KIVEKCSTCKGSGMTVQVQQIGPGMIQQVQHVCSD 298
G +++ + C VC G G K + C TC GSG VQ++Q G VQ C
Sbjct: 1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSG-QVQMRQ---GFFA-VQQTCPH 55
Query: 299 CKGQGERI 306
C+G+G I
Sbjct: 56 CQGRGTLI 63
Score = 29.6 bits (67), Expect = 0.84
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 253 CSVCEGRGGKSKIVEKCSTCKGSG 276
C C+GRG + I + C+ C G G
Sbjct: 53 CPHCQGRG--TLIKDPCNKCHGHG 74
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14;
DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A
{Saccharomyces cerevisiae}
Length = 71
Score = 62.8 bits (153), Expect = 1e-12
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 429 YDILGVKPNC-TQDELKKAYRKLALKYHPDKNPNEGEKFKQISMAYEVLSNPEKRE 483
IL + N T+ +LK+ +RK+ L HPDK + +I+ A + L +
Sbjct: 17 LQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSP-FLATKINEAKDFLEKRGISK 71
Score = 43.1 bits (102), Expect = 1e-05
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 32 GGQRKTSKDTAYYDLLGVKPGC-SDDELKKAYRTMARKYHPDR 73
G K + A +L + + +LK+ +R + HPD+
Sbjct: 6 GFDPKMNSKEAL-QILNLTENTLTKKKLKEVHRKIMLANHPDK 47
Score = 28.1 bits (63), Expect = 2.0
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 175 FKEINKAYDVLSNPEKRR 192
+IN+A D L +
Sbjct: 54 ATKINEAKDFLEKRGISK 71
>2qwo_B Putative tyrosine-protein phosphatase auxilin;
chaperone-cochaperone complex, ATP-binding,
nucleotide-bindi nucleus, phosphorylation, stress
response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B*
2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Length = 92
Score = 57.3 bits (138), Expect = 2e-10
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 429 YDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEGEK------FKQISMAYEVLSN 478
+ +G+ T +++KK YRK L HP K + + F +++ A+ N
Sbjct: 36 WKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91
Score = 40.4 bits (94), Expect = 2e-04
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 44 YDLLGVKPGCSDDELKKAYRTMARKYHPDRDPKNEDKQ 81
+ +G+ + +++KK YR HP + +Q
Sbjct: 36 WKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQ 73
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like
J-domain containing protein, JAC1, chloroplast
accumulation response; 1.80A {Arabidopsis thaliana}
Length = 106
Score = 55.4 bits (133), Expect = 1e-09
Identities = 10/60 (16%), Positives = 26/60 (43%), Gaps = 10/60 (16%)
Query: 429 YDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG----------EKFKQISMAYEVLSN 478
+ + + + ++K+Y++ L HPDK +G + F+ + A++ +
Sbjct: 43 WKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNT 102
Score = 40.0 bits (93), Expect = 3e-04
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 42 AYYDLLGVKPGCSDDELKKAYRTMARKYHPDRDP-KNEDKQQK 83
+ + + + + ++K+Y+ HPD+ K QK
Sbjct: 41 SGWKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQK 83
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 60.3 bits (145), Expect = 2e-09
Identities = 71/528 (13%), Positives = 146/528 (27%), Gaps = 185/528 (35%)
Query: 143 LKFVSTEEETAQVYGSSLFDHIEILIPRFYPQFKEINKAY---DVL-SNPEKRRVYDQGG 198
++ + DHI I+ ++ L S E + +
Sbjct: 33 FDCKDVQDMPKSILSKEEIDHI-IMSK------DAVSGTLRLFWTLLSKQE--EMVQKFV 83
Query: 199 EEAINQG-GF--GGYHRRGQQ---------QQKNRKGKD--VVHTLYVTMEELYSG---A 241
EE + F +Q +Q++R D V V+ + Y A
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143
Query: 242 VRKLALEKNVICSVCEGRG--GKSKIV-EKCST----CKGSG----MTVQVQQIGPGMIQ 290
+ +L KNV + +G GK+ + + C + CK + ++ +++
Sbjct: 144 LLELRPAKNV---LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 291 QVQHVCSDCKGQGERINPKDKRVGNNLQ-MTQNIDLVEA----LCGFQRYIKTLDGRVIM 345
+Q + +I+P ++ + I ++A L + Y L +++
Sbjct: 201 MLQKLLY-------QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL---LVL 250
Query: 346 IEVPGGRGGKSKIVE----KCS---TCKGSGMTVQVQQIGPGMIQQVQHVCSDCKGQGER 398
+ V +K C T + +T + I H + + +
Sbjct: 251 LNV-----QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 399 INPKDKCRTCAGKKFSCQAKRPNMVKETTFYDILGVKPNCTQDELKKAYRKLALKYHP-- 456
+ L +P +L + L +P
Sbjct: 306 L----------------------------LLKYLDCRP----QDL----PREVLTTNPRR 329
Query: 457 --------DKNPNEGEKFKQ---------ISMAYEVLSNPEKRELYDQGGYQGGRLWGRR 499
+ +K I + VL E R+++D+
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS---------- 379
Query: 500 RRLLLPNGYIRDVH--------GWQFGGRSAAKGEAIKEGGSGGGGGGFSSPMDIFEMFM 551
+ P H W + IK M +
Sbjct: 380 ---VFPP----SAHIPTILLSLIW---------FDVIKS-----------DVMVVVNKLH 412
Query: 552 GGSLGGGRRRRERKGKDVVHQLTVSLEDLYRGTVKKL----QLEKNVI 595
SL E++ K+ T+S+ +Y KL L ++++
Sbjct: 413 KYSL------VEKQPKE----STISIPSIYLELKVKLENEYALHRSIV 450
Score = 41.0 bits (95), Expect = 0.002
Identities = 67/532 (12%), Positives = 139/532 (26%), Gaps = 194/532 (36%)
Query: 29 GGAGGQRKTS------KDTAYYDLLGVKPG---------CSDDE-----LKKAYRTMARK 68
G+G KT Y + C+ E L+K +
Sbjct: 159 LGSG---KTWVALDVCLS---YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 69 YH--PD-----RDPKNEDKQQKNR--KGKDVVHTLYVTMEELYSGAVRKLALEKNVICSV 119
+ D + + + + R K K + L V + + + A N+ C
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-LLNVQNAKAWN-AF--NLSC-- 266
Query: 120 CEGKLFVTCLGK--TQGLLGGRAH--CLKFVS---TEEET----AQVYGSSLFD------ 162
K+ +T K T L L S T +E + D
Sbjct: 267 ---KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323
Query: 163 -----HIEIL-------IPRF----YPQFKEINKA----YDVLSNPEKRRVYDQGGEEAI 202
+ I+ + + + ++ +VL E R+++D ++
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD---RLSV 380
Query: 203 NQGGFGGYHRRGQQQQKNRKGKDV---VHTL--------YVTMEELYSGAVRKLALEKNV 251
F L + + + + +EK
Sbjct: 381 ----F---------------PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 252 ICSVCEGRGGKSKIVEKCSTCKGSGMTVQVQQIGPGMIQQVQHVCSDCKGQGERINPKDK 311
S ++ K + ++ + D+
Sbjct: 422 KESTISIPSIYLELKVKLE---------NEYALHRSIVDHYNIPKTFDSD-DLIPPYLDQ 471
Query: 312 ----RVG---NNLQMTQNIDLVEALCGFQRYIKTLDGRVIMIEVPGGRGGKSKIVEKCST 364
+G N++ + + L + + LD R + + KI +
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRMV-----F---LDFRFL----------EQKIRHDSTA 513
Query: 365 CKGSGMTVQVQQIGPGMIQQV----QHVCSDCKGQGERINPKDKCRTCAGKKFSCQAKRP 420
SG + +QQ+ ++C + PK + A F + +
Sbjct: 514 WNASGSILNT-------LQQLKFYKPYICDND--------PKYERLVNAILDFLPKIE-E 557
Query: 421 NMVKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG---EKFKQI 469
N++ + + D+L ++AL +E E KQ+
Sbjct: 558 NLIC-SKYTDLL----------------RIAL-----MAEDEAIFEEAHKQV 587
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 5e-05
Identities = 80/455 (17%), Positives = 138/455 (30%), Gaps = 178/455 (39%)
Query: 23 FGGAQQGGA------GGQRKTSKDTAYYDLLGVKPGCSD---DELKKAYRTMARKYHPD- 72
F +G A GGQ G +D +EL+ Y+T YH
Sbjct: 146 FRAVGEGNAQLVAIFGGQ-----------------GNTDDYFEELRDLYQT----YHVLV 184
Query: 73 ---------------RDPKNEDKQQKNRKGKDVVHTL----------YVTMEELYSGAVR 107
R + +K +G +++ L Y L S +
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFT--QGLNILEWLENPSNTPDKDY-----LLSIPI- 236
Query: 108 KLALEKNVICSVCEGKLFVTC--LGKTQG----LLGGRAHCLKFVST-----EEETAQVY 156
+ +I + VT LG T G L G + + T E ++ + +
Sbjct: 237 --SC--PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF 292
Query: 157 GSSLFDHIEILIPRFYPQFKEI----NKAYDVLS-NPEKRRVYDQGGEE------AINQG 205
S+ I +L F+ I +AY S P + E +I+
Sbjct: 293 FVSVRKAITVL---FF-----IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS-- 342
Query: 206 GFGGYHRRGQQQQK-----NRK---GKDVVHTLY-------VT--MEELYSGAVRKLALE 248
+ +Q Q N GK V +L V+ + LY G L L
Sbjct: 343 ---NLTQ--EQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLY-GLN--LTLR 394
Query: 249 KNVICSVCEGRGGKSKIVEKCSTCKGSGMTVQVQQ----IG-----PGMIQQVQHVCSDC 299
K S + +S+I S ++ + ++ + D
Sbjct: 395 KAKAPSGLD----QSRI-------PFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDL 443
Query: 300 KGQGERINPKDKRV-------GNNLQ-MTQNI--DLVEALCGFQ-----------RYIKT 338
N KD ++ G++L+ ++ +I +V+ + +I
Sbjct: 444 VKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHI-- 501
Query: 339 LD-GRVIMIEVPGGRGGKSKIVEKCSTCKGSGMTV 372
LD G PGG G + + G+G+ V
Sbjct: 502 LDFG-------PGGASGLGVLTHR--NKDGTGVRV 527
Score = 45.4 bits (107), Expect = 8e-05
Identities = 55/394 (13%), Positives = 94/394 (23%), Gaps = 170/394 (43%)
Query: 416 Q-AKRPNMVKETTFYDILGVKPNCTQDELKKAYRKLALKYHPD------KNPNE------ 462
Q ++ M + Y QD +A Y NP
Sbjct: 1624 QGSQEQGMGMD--LYK----TSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFG 1677
Query: 463 GEKFKQISMAYEVLSNPEKRELYDQGGYQGGRLWGRRRRLLLPNGYIRDVHGWQFGGR-- 520
GEK K+I RE Y ++ + G+ + + + F
Sbjct: 1678 GEKGKRI------------RENYSAMIFETI-VDGKLKTEKIFKEINEHSTSYTFRSEKG 1724
Query: 521 ---------------SAAKGEAIKEGGSGGGGGGFSSPMDIFEMFMGGSLG--------G 557
A E +K G P D F G SLG
Sbjct: 1725 LLSATQFTQPALTLMEKAAFEDLKSKGL--------IPADAT--FAGHSLGEYAALASLA 1774
Query: 558 GRRRRERKGKDVVHQLTVSLEDLYRGTVKKLQLEKNVICDKCEGRGGKKGAAESCP---- 613
+S+E L V RG + P
Sbjct: 1775 D---------------VMSIESLVE-VVFY--------------RG--MTMQVAVPRDEL 1802
Query: 614 GCRGTGMT-VTVQQFGPGMIQQ-IQTVCSECRGQGSRINPKDRCKTCNGKKTVRDRKILE 671
G GM + + Q+ +Q V GK+T ++E
Sbjct: 1803 GRSNYGMIAINPGRVAASFSQEALQYVVERV-----------------GKRT---GWLVE 1842
Query: 672 VHIDKGMIDQQKIV-FNGEGDQEPGLEHGDIIIVLEEKPHPVFKRSGNNLIIRPYEIALV 730
IV +N E Q + +G ++ +
Sbjct: 1843 ------------IVNYNVENQQ--------YVA------------AG--------DLRAL 1862
Query: 731 EALCGFRRPIKTLDDRDIIISAAPGEVMKHSDIK 764
+ + + + + I I + + +++
Sbjct: 1863 DTVTNV---LNFIKLQKIDIIELQ-KSLSLEEVE 1892
Score = 41.2 bits (96), Expect = 0.002
Identities = 45/300 (15%), Positives = 85/300 (28%), Gaps = 126/300 (42%)
Query: 149 EEETAQVYGSSLFDHIEILIPRFYPQFKEINKAYDVLSNPEKRRVYDQGGEEAINQGGFG 208
+ YG S+ ++I V++NP ++ FG
Sbjct: 1650 DNHFKDTYGFSI---LDI-----------------VINNPVNLTIH------------FG 1677
Query: 209 GYHRRGQQQQKNRKGKDVVHTLYVTM--EELYSGAVRKLALEKNVICSVCEGRGGKSKIV 266
G +G++ ++N Y M E + G ++ + K I
Sbjct: 1678 GE--KGKRIREN----------YSAMIFETIVDGKLKTEKIFKE--------------IN 1711
Query: 267 EKCSTCKGSG------MTVQVQQIGPGM----IQQVQHVCSDCKGQGERINPKDKRV--- 313
E ++ T Q Q P + + + K +G + P D
Sbjct: 1712 EHSTSYTFRSEKGLLSAT-QFTQ--PALTLMEKAAFEDL----KSKG--LIPADATFAGH 1762
Query: 314 -----------GNNLQMTQNIDLVEALCGFQRYIKTLDGRVIMIEVPGGRGGKSKIVEKC 362
+ + + +++V F R G + + VP G+S
Sbjct: 1763 SLGEYAALASLADVMSIESLVEVV-----FYR------GMTMQVAVPRDELGRSNY---- 1807
Query: 363 STCKGSGMT-VQVQQIGPGMIQQ-VQHVCSD-CKGQGERI---NPKDKCRT----CAGKK 412
GM + ++ Q+ +Q+V K G + N AG
Sbjct: 1808 ------GMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN--YNVENQQYVAAGDL 1859
Score = 40.4 bits (94), Expect = 0.003
Identities = 64/410 (15%), Positives = 109/410 (26%), Gaps = 168/410 (40%)
Query: 541 SSPMDIFEMFMG------GSLGGGRRRR---------ER---KGKDVVHQLTVSLEDLYR 582
++P ++ F+G G+ + E +G D+ H L L
Sbjct: 55 TTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI-HALAAKLLQEND 113
Query: 583 GTVKKLQLEKNVICDKC-------EGRGGKKG-------AAESCPGCRGTGMTVTVQQFG 628
T+ K K +I K R K A G V FG
Sbjct: 114 TTLVK---TKELI--KNYITARIMAKRPFDKKSNSALFRAVGE-------GNAQLVAIFG 161
Query: 629 PGMIQQIQTVCSECRGQGSRINPKDRCKTCNGKKTVRD-RKILEV--HIDKGMIDQ---- 681
GQG N + R + + + +I
Sbjct: 162 ---------------GQG------------NTDDYFEELRDLYQTYHVLVGDLIKFSAET 194
Query: 682 -QKIVFNGEGDQEPGLEHG-DIIIVLEE---KPH-------PV------------FKRSG 717
+++ D E G +I+ LE P P+ + +
Sbjct: 195 LSELIRTTL-DAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTA 253
Query: 718 NNLIIRPYEIALVEALCGFRRPIKTLDDRDII----ISAAP------------------- 754
L P E L L G T + ++ I+
Sbjct: 254 KLLGFTPGE--LRSYLKGA-----TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI 306
Query: 755 G----EVMKHSDI--KMV-----VGEGMPTYKDPFEKGNLIIVFSVKFPDVIPVDK-VPA 802
G E ++ + ++ EG+P+ + S+ V V
Sbjct: 307 GVRCYEAYPNTSLPPSILEDSLENNEGVPSP-----------MLSISNLTQEQVQDYVNK 355
Query: 803 IEACLPPRPKVTIP-ENGEE--VV------LETMDP--EKERAQNAYRQA 841
+ LP +V I NG + VV L ++ K +A + Q+
Sbjct: 356 TNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS 405
Score = 40.0 bits (93), Expect = 0.004
Identities = 44/249 (17%), Positives = 67/249 (26%), Gaps = 97/249 (38%)
Query: 633 QQIQTVCSECRGQGSRINPKDRCKTCNGKKTVRDRKILEVHIDKGMIDQ-----QKIV-- 685
Q Q G G D KT + V +R D D IV
Sbjct: 1624 QGSQEQ-----GMG-----MDLYKTSKAAQDVWNR------ADNHFKDTYGFSILDIVIN 1667
Query: 686 --------FNGEGDQEPGLEHGDIIIVLE------EKPHPVFKRSGNNLIIRPYEIALVE 731
F GE + + ++ E K +FK EI
Sbjct: 1668 NPVNLTIHFGGEKGKR--IRENYSAMIFETIVDGKLKTEKIFK-----------EINEHS 1714
Query: 732 ALCGFRRPIKTLDDRDI------IISAAPGEVMK-------------HSDIKMVVGE--- 769
FR L ++ A E +K HS +GE
Sbjct: 1715 TSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHS-----LGEYAA 1769
Query: 770 -----G-MPTYKDPFEKGNLI-IVFS--VKFPDVIPVDKV----PAIEACLPPRPKVTIP 816
M E +L+ +VF + +P D++ + A P R +
Sbjct: 1770 LASLADVMS-----IE--SLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFS 1822
Query: 817 ENGEEVVLE 825
+ + V+E
Sbjct: 1823 QEALQYVVE 1831
Score = 39.3 bits (91), Expect = 0.007
Identities = 99/631 (15%), Positives = 167/631 (26%), Gaps = 270/631 (42%)
Query: 140 AHCLKFVSTEEETAQVYGSSLFDHI-EILIPRFYPQF----------------------- 175
L +VS+ E ++V FD + + + F +
Sbjct: 62 GKFLGYVSSLVEPSKV---GQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK 118
Query: 176 -KEINKAYDVLSNPEKRRVYDQGGE----EAINQGG------FGGYHRRGQQQQKNRKGK 224
KE+ K Y + + +R +D+ A+ +G FGG Q N
Sbjct: 119 TKELIKNY-ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG--------QGNTDD- 168
Query: 225 DVVHTLYVTMEEL------YSGAVRKLALEKNVICSVCEGRGGKSKIVEKCSTCKGSGMT 278
Y EEL Y V L I E + G+
Sbjct: 169 ------YF--EELRDLYQTYHVLVGDL------IKFSAETLSELIRTTLDAEKVFTQGLN 214
Query: 279 V----QVQQIGPG------------MIQQVQ--HVCSDCKGQGERINPKDKRVGNNLQ-- 318
+ + P +I +Q H K G P + R + L+
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG--FTPGELR--SYLKGA 270
Query: 319 MTQNIDLVEALC--------GFQR-YIKTLDGRVIMIEVPGGRGGKSKIVEKCSTCKGSG 369
+ LV A+ F K + ++ + G R +
Sbjct: 271 TGHSQGLVTAVAIAETDSWESFFVSVRKAIT---VLFFI-GVRCYE-------------- 312
Query: 370 MTVQVQQIGPGMIQQVQHVCSDCKGQGERINPKDKCRTCAGKKFSCQAKRPN-MVKETTF 428
+ P +++ D E P+ M
Sbjct: 313 -AYPNTSLPPSILE-------DSLENNE--------------------GVPSPM------ 338
Query: 429 YDILGVKPNCTQDELKKAYRKLALKYHPDKN---PNEGEKFKQISMAYEVLSNPEKRELY 485
L + N TQ++++ K N P KQ+ ++ L N
Sbjct: 339 ---LSIS-NLTQEQVQDYVNKT--------NSHLPAG----KQVEIS---LVN------- 372
Query: 486 DQGGYQGGRLWGRRRRLLLPNGYIRDVHGWQFGGRSAAKGEAIKEGGSGGGGGGFSSPMD 545
G + ++ +G + ++G R K +A S +D
Sbjct: 373 -----------GAKNLVV--SGPPQSLYGLNLTLR---KAKA-------------PSGLD 403
Query: 546 IFEMFMGGSLGGGRRR---RERKGKDVVHQ-LTVS---------------LEDLYRGTV- 585
+ R ERK K ++ L V+ +DL + V
Sbjct: 404 -------------QSRIPFSERKLK-FSNRFLPVASPFHSHLLVPASDLINKDLVKNNVS 449
Query: 586 -KKLQLEKNVICDKCEG---RGGKKGAAES-CPG-CRG-------TGMTVT-VQQFGPGM 631
++ V D +G R +E R T T + FGPG
Sbjct: 450 FNAKDIQIPVY-DTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGG 508
Query: 632 IQQIQTVCSE-CRGQGSRI--------NPKD 653
+ + G G R+ NP D
Sbjct: 509 ASGLGVLTHRNKDGTGVRVIVAGTLDINPDD 539
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 39.2 bits (90), Expect = 0.002
Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 3/20 (15%)
Query: 444 KKAYRKL--ALK-YHPDKNP 460
K+A +KL +LK Y D P
Sbjct: 19 KQALKKLQASLKLYADDSAP 38
Score = 32.2 bits (72), Expect = 0.33
Identities = 6/19 (31%), Positives = 9/19 (47%), Gaps = 1/19 (5%)
Query: 57 ELKKAYRTMARKYHPDRDP 75
LKK ++ + Y D P
Sbjct: 21 ALKKLQASL-KLYADDSAP 38
Score = 30.7 bits (68), Expect = 1.1
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 5/35 (14%)
Query: 591 EKNVICDKCEGRGGKKGAAESCPGCRGTGMTVTVQ 625
EK + K + K A +S P + T++
Sbjct: 18 EKQAL-KKLQASL-KLYADDSAP---ALAIKATME 47
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure
initiative, midwest center for structural genomics,
MCSG; 2.30A {Klebsiella pneumoniae subsp}
Length = 109
Score = 32.9 bits (76), Expect = 0.094
Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 15/89 (16%)
Query: 709 PHPVFKRSGNNLIIR-PYEIALVEALCGFRRPIKTLDDR-DIIISA--APGEVMKHSDIK 764
HP+F G+NL I P +A EA G + + TL + + + G+ ++
Sbjct: 3 AHPLFDIVGHNLEIVLP--LAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLR----- 55
Query: 765 MVVGEGMPTYKDPFEKGNLIIVFSVKFPD 793
+ G+G+ + G+L V + P
Sbjct: 56 -IKGKGLVSKTHT---GDLFAVIKIVMPT 80
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 33.9 bits (77), Expect = 0.13
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 10/45 (22%)
Query: 602 RGGKKGAAES----CPGCRGTGMTVTVQQFGPGMIQQIQTVCSEC 642
R G++G + CP C V++F G VC+ C
Sbjct: 10 RAGRRGPNLNIVLTCPEC-KVYPPKIVERFSEG-----DVVCALC 48
Score = 30.8 bits (69), Expect = 1.4
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 9/55 (16%)
Query: 347 EVPGGRGGKSKIVEKCSTCKGSGMTVQVQQIGPGMIQQVQHVCSDCKGQ--GERI 399
+ G RG IV C CK + V++ G VC+ C G +++
Sbjct: 9 KRAGRRGPNLNIVLTCPECKVYPPKI-VERFSEG-----DVVCALC-GLVLSDKL 56
Score = 30.0 bits (67), Expect = 2.2
Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 24/63 (38%)
Query: 625 QQFGPGMIQQIQTVCSECRG----------QGSRINPKDRCKTCNGKKTVRDRKILEVHI 674
+ GP + I C EC+ +G + C C G V K+ +
Sbjct: 12 GRRGPNL--NIVLTCPECKVYPPKIVERFSEGDVV-----CALC-G--LVLSDKL----V 57
Query: 675 DKG 677
D
Sbjct: 58 DTR 60
Score = 30.0 bits (67), Expect = 2.3
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 14/49 (28%)
Query: 247 LEKNVICSVCEGRGGKSKIVEK-------CSTCKGSGMTVQVQQI--GP 286
L + C C + KIVE+ C+ C G+ + + +
Sbjct: 18 LNIVLTCPEC--KVYPPKIVERFSEGDVVCALC---GLVLSDKLVDTRS 61
Score = 29.2 bits (65), Expect = 3.8
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 9/52 (17%)
Query: 257 EGRGGKSKIVEKCSTCKGSGMTVQVQQIGPGMIQQVQHVCSDCKGQ--GERI 306
RG IV C CK + V++ G VC+ C G +++
Sbjct: 12 GRRGPNLNIVLTCPECKVYPPKI-VERFSEG-----DVVCALC-GLVLSDKL 56
Score = 28.5 bits (63), Expect = 7.1
Identities = 6/34 (17%), Positives = 11/34 (32%), Gaps = 15/34 (44%)
Query: 385 VQHVCSDCKG----------QGERINPKDKCRTC 408
+ C +CK +G+ + C C
Sbjct: 20 IVLTCPECKVYPPKIVERFSEGDVV-----CALC 48
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit
protein; transcription regulation; 2.80A {Bacillus
subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Length = 53
Score = 29.7 bits (66), Expect = 0.36
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 594 VICDKCEGRGGKKGAAESCPGCRGTGMTVTVQ 625
V C KCE G +G CP C G G+ +T Q
Sbjct: 10 VACPKCERAGEIEG--TPCPACSGKGVILTAQ 39
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap,
tryptophan RNA-binding attenuation PROT transcription
attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Length = 53
Score = 29.3 bits (65), Expect = 0.55
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 594 VICDKCEGRGGKKGAAESCPGCRGTGMTVTVQ 625
C C G G ++ E CP C G G+ +T Q
Sbjct: 10 TTCPNCNGSGREEP--EPCPKCLGKGVILTAQ 39
>1ynf_A Succinylarginine dihydrolase; 1.90A {Escherichia coli} SCOP:
d.126.1.7 PDB: 1ynh_A* 1yni_A*
Length = 458
Score = 31.7 bits (72), Expect = 1.2
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 155 VYGSSLFDHIEILIPRFYP--QFKEINKAYDVLSN-PEKRRVYDQGGEEAINQGGF 207
VYG + P YP Q +E ++A L+ ++ ++ Q + I+QG F
Sbjct: 206 VYGREEGNDTR---PSRYPARQTREASEAVARLNQVNPQQVIFAQQNPDVIDQGVF 258
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY
crystallography, neuregulins, heparin-binding, cell CY
signaling protein; HET: NAG NDG; 2.40A {Homo sapiens}
PDB: 3u2p_A*
Length = 617
Score = 31.6 bits (70), Expect = 1.2
Identities = 11/116 (9%), Positives = 29/116 (25%), Gaps = 2/116 (1%)
Query: 293 QHVCSDCKGQGERINPKDKRVGNNLQMTQNIDLVEALCGFQRYIKTLDGRVIMIEVPGGR 352
I + G +L + + + FQ + G + + +
Sbjct: 386 NMTDFSVFSNLVTIGGRVLYSGLSLLILKQQGITS--LQFQSLKEISAGNIYITDNSNLC 443
Query: 353 GGKSKIVEKCSTCKGSGMTVQVQQIGPGMIQQVQHVCSDCKGQGERINPKDKCRTC 408
+ + + ++ + + C G D+C +C
Sbjct: 444 YYHTINWTTLFSTINQRIVIRDNRKAENCTAEGMVCNHLCSSDGCWGPGPDQCLSC 499
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16;
DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A
{Saccharomyces cerevisiae}
Length = 65
Score = 28.7 bits (64), Expect = 1.4
Identities = 5/31 (16%), Positives = 12/31 (38%), Gaps = 3/31 (9%)
Query: 431 ILGVKP---NCTQDELKKAYRKLALKYHPDK 458
IL ++ + D++ + L +K
Sbjct: 9 ILNIEESKGDLNMDKINNRFNYLFEVNDKEK 39
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D
of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis,
membrane, phagocytosis; NMR {Homo sapiens}
Length = 119
Score = 28.5 bits (63), Expect = 3.7
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 686 FNGEGDQEPGLEHGDIIIVLEEKPH 710
F G G + L+ GD++ + E
Sbjct: 68 FQGSGAPQLSLQIGDVVRIQETCGD 92
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase,
tramp, exosome, DEAD, nucleotide-binding; HET: ADP;
2.90A {Saccharomyces cerevisiae}
Length = 1010
Score = 29.8 bits (66), Expect = 5.3
Identities = 20/157 (12%), Positives = 55/157 (35%), Gaps = 12/157 (7%)
Query: 376 QIGPGMIQQVQHVCSDCKGQGERINPKDKCRTCAGKKFSCQAKRPNMVKETTFYDILGVK 435
+ P + ++ + + + I + T + P+ + + ++
Sbjct: 695 AVIPITLDSIKSIGNLRLYMPKDIRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKIE 754
Query: 436 PNCTQDELKKAYRKLA-----LKYHP-DKNPNEGEKFKQISMAYEVLSNPE--KRELYDQ 487
++ K +K+ L +P + E + + S +++ + + KR++ +
Sbjct: 755 ----DEDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISES 810
Query: 488 GGYQGGRLWGRRRRLLLPNGYIRDVHGWQFGGRSAAK 524
RR+R+L G+ + GR A +
Sbjct: 811 QAVIQLDDLRRRKRVLRRLGFCTPNDIIELKGRVACE 847
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold,
winged-helix-turn-helix, antiparallel-coiled-COI domain,
ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces
cerevisiae}
Length = 1108
Score = 29.4 bits (65), Expect = 6.3
Identities = 20/153 (13%), Positives = 52/153 (33%), Gaps = 4/153 (2%)
Query: 376 QIGPGMIQQVQHVCSDCKGQGERINPKDKCRTCAGKKFSCQAKRPNMVKETTFYDILGVK 435
+ P + ++ + + + I + T + P+ + + ++
Sbjct: 793 AVIPITLDSIKSIGNLRLYMPKDIRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKIE 852
Query: 436 PNCTQDELKKAYRKLA-LKYHP-DKNPNEGEKFKQISMAYEVLSNPE--KRELYDQGGYQ 491
+KK L +P + E + + S +++ + + KR++ +
Sbjct: 853 DEDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAVI 912
Query: 492 GGRLWGRRRRLLLPNGYIRDVHGWQFGGRSAAK 524
RR+R+L G+ + GR A +
Sbjct: 913 QLDDLRRRKRVLRRLGFCTPNDIIELKGRVACE 945
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune
system, antibody, ENA11His antibody, immunoglobulin
domain; 2.75A {Mus musculus}
Length = 254
Score = 29.0 bits (65), Expect = 6.9
Identities = 13/43 (30%), Positives = 17/43 (39%)
Query: 279 VQVQQIGPGMIQQVQHVCSDCKGQGERINPKDKRVGNNLQMTQ 321
VQ+QQ G +++ V CK G L MTQ
Sbjct: 1 VQLQQSGAELVRPGTSVKLSCKASGYSFTNYWMNWLRELVMTQ 43
>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex,
DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich
sequence, cytoskeleton; 2.10A {Homo sapiens}
Length = 184
Score = 28.5 bits (63), Expect = 7.0
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 686 FNGEGDQEPGLEHGDIIIVLEEKPH 710
F G G + L+ GD++ + E
Sbjct: 26 FQGSGAPQLSLQIGDVVRIQETCGD 50
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics,
zinc, PSI, protein structure initiative; 1.38A
{Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Length = 69
Score = 26.2 bits (58), Expect = 8.8
Identities = 7/29 (24%), Positives = 10/29 (34%), Gaps = 4/29 (13%)
Query: 638 VCSECRGQGSRINPKDRCKTCNGKKTVRD 666
C C I +DRC C + +
Sbjct: 13 ACRHCH----YITSEDRCPVCGSRDLSEE 37
>2wnk_A Sporosag, sporozoite-specific SAG protein; membrane protein; 1.55A
{Toxoplasma gondii} PDB: 2x28_A
Length = 238
Score = 28.3 bits (62), Expect = 9.6
Identities = 13/97 (13%), Positives = 21/97 (21%), Gaps = 15/97 (15%)
Query: 581 YRGTVKKLQLEKNVICDKCEGRGGKKGAAESCPGCRGTGMTVTVQQFGPGMIQQI----- 635
+ TV L + + C+ G + A V +
Sbjct: 82 FTLTVDALPEAETSVFFLCQRTGASRSARRLGTAVPSDKCGVHILVKAAPQAPVCSAQDH 141
Query: 636 ----------QTVCSECRGQGSRINPKDRCKTCNGKK 662
C G + I P + K G
Sbjct: 142 TLELQITAANSDTSFVCGGTFNVIKPANAAKVLQGDS 178
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.138 0.416
Gapped
Lambda K H
0.267 0.0538 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,865,016
Number of extensions: 910626
Number of successful extensions: 2644
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2486
Number of HSP's successfully gapped: 177
Length of query: 858
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 756
Effective length of database: 3,853,851
Effective search space: 2913511356
Effective search space used: 2913511356
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.1 bits)