RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10927
(858 letters)
>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein
mas5 (Hsp40, Ydj1), insert domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 74
Score = 87.0 bits (215), Expect = 1e-21
Identities = 38/75 (50%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 592 KNVICDKCEGRGGKKGAAESCPGCRGTGMTVTVQQFGPGMIQQIQTVCSECRGQGSRINP 651
K ++C +CEGRGGKKGA + C C G G+ +Q GP + Q+ QT C C G G I+P
Sbjct: 1 KQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMI-QRFQTECDVCHGTGDIIDP 59
Query: 652 KDRCKTCNGKKTVRD 666
KDRCK+CNGKK +
Sbjct: 60 KDRCKSCNGKKVENE 74
Score = 66.6 bits (162), Expect = 2e-14
Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 249 KNVICSVCEGRGGKSKIVEKCSTCKGSGMTVQVQQIGPGMIQQVQHVCSDCKGQGERINP 308
K ++C CEGRGGK V+KC++C G G+ +Q+GP + Q+ Q C C G G+ I+P
Sbjct: 1 KQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMI-QRFQTECDVCHGTGDIIDP 59
Query: 309 KDK 311
KD+
Sbjct: 60 KDR 62
Score = 63.5 bits (154), Expect = 3e-13
Identities = 29/63 (46%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 350 GGRGGKSKIVEKCSTCKGSGMTVQVQQIGPGMIQQVQHVCSDCKGQGERINPKDKCRTCA 409
GRGGK V+KC++C G G+ +Q+GP + Q+ Q C C G G+ I+PKD+C++C
Sbjct: 9 EGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMI-QRFQTECDVCHGTGDIIDPKDRCKSCN 67
Query: 410 GKK 412
GKK
Sbjct: 68 GKK 70
Score = 26.6 bits (58), Expect = 2.7
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 251 VICSVCEGRGGKSKIVEKCSTCKGSGMT 278
C VC G G ++C +C G +
Sbjct: 45 TECDVCHGTGDIIDPKDRCKSCNGKKVE 72
Score = 26.6 bits (58), Expect = 3.2
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 386 QHVCSDCKGQGERINPKDKCRTCAGKKFSCQ 416
Q +C +C+G+G + KC +C G+
Sbjct: 2 QILCKECEGRGGKKGAVKKCTSCNGQGIKFV 32
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain
{Escherichia coli [TaxId: 562]}
Length = 75
Score = 81.2 bits (200), Expect = 2e-19
Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 3/68 (4%)
Query: 428 FYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG---EKFKQISMAYEVLSNPEKREL 484
+Y+ILGV + E++KAY++LA+KYHPD+N + KFK+I AYEVL++ +KR
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAA 64
Query: 485 YDQGGYQG 492
YDQ G+
Sbjct: 65 YDQYGHAA 72
Score = 50.0 bits (119), Expect = 2e-08
Identities = 18/47 (38%), Positives = 33/47 (70%)
Query: 43 YYDLLGVKPGCSDDELKKAYRTMARKYHPDRDPKNEDKQQKNRKGKD 89
YY++LGV + E++KAY+ +A KYHPDR+ +++ + K ++ K+
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKE 51
Score = 43.1 bits (101), Expect = 4e-06
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 169 PRFYPQFKEINKAYDVLSNPEKRRVYDQGGEEAINQ 204
+FKEI +AY+VL++ +KR YDQ G A Q
Sbjct: 40 KEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQ 75
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId:
9913]}
Length = 98
Score = 80.8 bits (199), Expect = 4e-19
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 427 TFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEGEK------FKQISMAYEVLSNPE 480
T + +G+ T +++KK YRK L HPDK + + F +++ A+ N
Sbjct: 34 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQG 93
Query: 481 KRELY 485
++ LY
Sbjct: 94 QKPLY 98
Score = 49.2 bits (117), Expect = 5e-08
Identities = 9/49 (18%), Positives = 20/49 (40%)
Query: 42 AYYDLLGVKPGCSDDELKKAYRTMARKYHPDRDPKNEDKQQKNRKGKDV 90
+ +G+ + +++KK YR HPD+ +Q ++
Sbjct: 34 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMEL 82
Score = 38.8 bits (90), Expect = 2e-04
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 174 QFKEINKAYDVLSNPEKRRVY 194
F E+N A+ N ++ +Y
Sbjct: 78 IFMELNDAWSEFENQGQKPLY 98
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3
(J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 94
Score = 78.6 bits (193), Expect = 3e-18
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 428 FYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEGEK---------FKQISMAYEVLSN 478
+Y ILG P+ +LK+ Y+KL L YHPDK + F +I A+++L N
Sbjct: 18 WYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGN 77
Query: 479 PEKRELYDQGGY 490
E ++ YD
Sbjct: 78 EETKKKYDLQRS 89
Score = 52.4 bits (125), Expect = 4e-09
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 24 GGAQQGGAGGQRKTSKDTAYYDLLGVKPGCSDDELKKAYRTMARKYHPDRDPKNEDKQQK 83
G + G ++ KD +Y +LG P + +LK+ Y+ + YHPD+ +
Sbjct: 1 GSSGSSGMALEQTLKKD--WYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTM 58
Query: 84 N 84
Sbjct: 59 E 59
Score = 45.1 bits (106), Expect = 1e-06
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Query: 162 DHIEILIPRFYPQFKEINKAYDVLSNPEKRRVYDQGGEEAINQGGFGG 209
D + +F EI++A+ +L N E ++ YD G G
Sbjct: 52 DVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQR-----SGPSSG 94
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain
{Escherichia coli [TaxId: 562]}
Length = 76
Score = 76.2 bits (187), Expect = 9e-18
Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 10/69 (14%)
Query: 428 FYDILGVKPNCTQD--ELKKAYRKLALKYHPDKNPNEG--------EKFKQISMAYEVLS 477
++ + G+ D L ++ L +YHPDK + ++ I+ A++ L
Sbjct: 3 YFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLR 62
Query: 478 NPEKRELYD 486
+P R Y
Sbjct: 63 HPLMRAEYL 71
Score = 51.6 bits (123), Expect = 5e-09
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 43 YYDLLGVKPGCSDD--ELKKAYRTMARKYHPDRDPKNEDKQQKNRKGK 88
Y+ L G+ D L ++ + R+YHPD+ +Q +
Sbjct: 3 YFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQ 50
Score = 37.3 bits (86), Expect = 6e-04
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 174 QFKEINKAYDVLSNPEKRRVYD 195
Q IN+A+ L +P R Y
Sbjct: 50 QSATINQAWQTLRHPLMRAEYL 71
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
{Murine polyomavirus [TaxId: 10634]}
Length = 79
Score = 75.0 bits (184), Expect = 2e-17
Identities = 10/74 (13%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 418 KRPNMVKETTFYDILGVKPNC--TQDELKKAYRKLALKYHPDKNPNEGEKFKQISMAYEV 475
+ + + ++L + +++AY++ +L HPDK + ++++ +
Sbjct: 3 RVLSRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSH-ALMQELNSLWGT 61
Query: 476 LSNPEKRELYDQGG 489
+ GG
Sbjct: 62 FKTEVYNLRMNLGG 75
Score = 43.1 bits (101), Expect = 5e-06
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 35 RKTSKDTAYYDLLGVKPGCSDD--ELKKAYRTMARKYHPDRDPKNEDKQQKNR 85
R + +LL + D +++AY+ + HPD+ + Q+ N
Sbjct: 7 RADKER--LLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNS 57
Score = 41.5 bits (97), Expect = 2e-05
Identities = 4/27 (14%), Positives = 9/27 (33%)
Query: 172 YPQFKEINKAYDVLSNPEKRRVYDQGG 198
+ +E+N + + GG
Sbjct: 49 HALMQELNSLWGTFKTEVYNLRMNLGG 75
>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 75.5 bits (185), Expect = 3e-17
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
Query: 417 AKRPNMVKETTFYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNEG----EKFKQISMA 472
R +++KE ++ + E KK R+L LK+HPDKNP E FK +
Sbjct: 9 VPRGSILKE--VTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNE 66
Query: 473 YEVLSNPEKRELYDQGGYQGGR 494
L EK+ DQ + R
Sbjct: 67 INRL---EKQAFLDQNADRASR 85
Score = 47.0 bits (111), Expect = 2e-07
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 43 YYDLLGVKPGCSDDELKKAYRTMARKYHPDRDPKNEDKQQKNRK 86
++ + E KK R + K+HPD++P+N D + K
Sbjct: 18 VTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFK 61
Score = 31.9 bits (72), Expect = 0.048
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 174 QFKEINKAYDVLSNPEKRRVYDQGGEEA 201
FK + + L EK+ DQ + A
Sbjct: 59 VFKHLQNEINRL---EKQAFLDQNADRA 83
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 70.5 bits (172), Expect = 1e-15
Identities = 33/67 (49%), Positives = 49/67 (73%), Gaps = 2/67 (2%)
Query: 428 FYDILGVKPNCTQDELKKAYRKLALKYHPDKNPNE--GEKFKQISMAYEVLSNPEKRELY 485
+Y LG+ + +E+K+AYR+ AL+YHPDKN EKFK+I+ AY+VLS+P KRE++
Sbjct: 5 YYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIF 64
Query: 486 DQGGYQG 492
D+ G +G
Sbjct: 65 DRYGEEG 71
Score = 43.9 bits (103), Expect = 2e-06
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 4/58 (6%)
Query: 38 SKDTAYYDLLGVKPGCSDDELKKAYRTMARKYHPDR--DPKNEDKQQKNRKGKDVVHT 93
KD YY LG+ G SD+E+K+AYR A +YHPD+ +P E+K ++ + DV+
Sbjct: 2 GKD--YYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSD 57
Score = 40.9 bits (95), Expect = 3e-05
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 169 PRFYPQFKEINKAYDVLSNPEKRRVYDQGGEEAINQGG 206
P +FKEI +AYDVLS+P KR ++D+ GEE + G
Sbjct: 39 PGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLKGSG 76
>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein
mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 80
Score = 69.2 bits (169), Expect = 3e-15
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 713 FKRSGNNLIIRPYEIALVEALCGFRRPIKTLDDRDIIISAAPGEVMKHSDIKMVVGEGMP 772
FKR G++L+ EI L+ A+ G ++ + + + PGEV+ K++ G+GMP
Sbjct: 2 FKRDGDDLVYE-AEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMP 60
Query: 773 TYKDPFEKGNLIIVFSVKFPD 793
K GNLII F++K P+
Sbjct: 61 IPKYG-GYGNLIIKFTIKDPE 80
Score = 43.8 bits (103), Expect = 3e-06
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 311 KRVGNNLQMTQNIDLVEALCGFQRYIKTLDGRVIMIEVPGGRGGKSKIVEKCSTCKGSGM 370
KR G++L IDL+ A+ G + ++ + G + + + G + + +G GM
Sbjct: 3 KRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKV---IEGKGM 59
Score = 26.8 bits (59), Expect = 3.2
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 563 ERKGKDVVHQLTVSLEDLYRGTVKKLQLEKNVICDKCEGRGGKKGAAESCPGCRGTGM 620
+R G D+V++ + L G L+ + K G+ A G GM
Sbjct: 3 KRDGDDLVYEAEIDLLTAIAGGEFALEH-VSGDWLKVGIVPGEVIAPGMRKVIEGKGM 59
>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 90
Score = 68.8 bits (168), Expect = 5e-15
Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 713 FKRSGNNLIIRPYEIALVEALCGFRRPIKTLDDRDIIISAAPGEVMKHSDIKMVVGEGMP 772
FKR G++LI ++ E+L GF + I+T+D R + +S ++ S G+GMP
Sbjct: 2 FKRDGDDLIYT-LPLSFKESLLGFSKTIQTIDGRTLPLSRVQ--PVQPSQTSTYPGQGMP 58
Query: 773 TYKDPFEKGNLIIVFSVKFPDVIPVDKVPAIE 804
T K+P ++GNLI+ + V +P + + AI+
Sbjct: 59 TPKNPSQRGNLIVKYKVDYPISLNDAQKRAID 90
Score = 41.1 bits (96), Expect = 3e-05
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 311 KRVGNNLQMTQNIDLVEALCGFQRYIKTLDGRVIMIEVPGGRGGKSKIVEKCSTCKGSGM 370
KR G++L T + E+L GF + I+T+DGR + + + + ST G GM
Sbjct: 3 KRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRV-----QPVQPSQTSTYPGQGM 57
Query: 371 TV 372
Sbjct: 58 PT 59
Score = 29.1 bits (65), Expect = 0.59
Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 3/68 (4%)
Query: 563 ERKGKDVVHQLTVSLEDLYRGTVKKLQLEKNVICDKCEGRGGKKGAAESCPGCRGTGMTV 622
+R G D+++ L +S ++ G K +Q + G GM
Sbjct: 3 KRDGDDLIYTLPLSFKESLLGFSKTIQTID---GRTLPLSRVQPVQPSQTSTYPGQGMPT 59
Query: 623 TVQQFGPG 630
G
Sbjct: 60 PKNPSQRG 67
>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
{Simian virus 40, Sv40 [TaxId: 10633]}
Length = 114
Score = 64.8 bits (157), Expect = 3e-13
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 424 KETTFYDILGVKPNCTQD--ELKKAYRKLALKYHPDKNPNEGEKFKQISMAYEVLSNPEK 481
+ D+LG++ + + ++KAY K ++HPDK +E EK K+++ Y+ + + K
Sbjct: 6 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE-EKMKKMNTLYKKMEDGVK 64
Query: 482 RELYDQGG 489
G
Sbjct: 65 YAHQPDFG 72
Score = 44.4 bits (104), Expect = 4e-06
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 35 RKTSKDTAYYDLLGVKPGC--SDDELKKAYRTMARKYHPDRDPKNEDKQQKNRK 86
R+ S DLLG++ + ++KAY +++HPD+ E ++ N
Sbjct: 4 REESLQ--LMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTL 55
Score = 38.6 bits (89), Expect = 4e-04
Identities = 6/55 (10%), Positives = 15/55 (27%)
Query: 172 YPQFKEINKAYDVLSNPEKRRVYDQGGEEAINQGGFGGYHRRGQQQQKNRKGKDV 226
+ K++N Y + + K G +Q +++
Sbjct: 46 EEKMKKMNTLYKKMEDGVKYAHQPDFGGFWDATEIPTYGTDEWEQWWNAFNEENL 100
>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 80
Score = 59.5 bits (144), Expect = 8e-12
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 645 QGSRINPKDRCKTCNGKKTVRDRKILEVHIDKGMIDQQKIVFNGEGDQEP-GLEHGDIII 703
G + + K K +G ++ +++ + G KI + +GD P +
Sbjct: 16 VGKKKSFKIGRKGPHGAS---EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQF 72
Query: 704 VLEEKPHP 711
V++EK HP
Sbjct: 73 VIQEKSHP 80
Score = 33.7 bits (77), Expect = 0.009
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 568 DVVHQLTVSLEDLYRGTVKKLQLEKNVICDKCEGRGGKK 606
V L VSLEDL+ G K ++ G K
Sbjct: 2 TVQVNLPVSLEDLFVGKKKSFKIG----RKGPHGASEKT 36
Score = 30.7 bits (69), Expect = 0.14
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 225 DVVHTLYVTMEELYSGAVRKLALEKNVICSVCEGRGGKSKI 265
V L V++E+L+ G + + G K++I
Sbjct: 2 TVQVNLPVSLEDLFVGKKKSFKIG----RKGPHGASEKTQI 38
Score = 26.8 bits (59), Expect = 2.4
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 89 DVVHTLYVTMEELYSGAVRKL 109
V L V++E+L+ G +
Sbjct: 2 TVQVNLPVSLEDLFVGKKKSF 22
>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein
DnaJ {Escherichia coli [TaxId: 562]}
Length = 79
Score = 54.0 bits (129), Expect = 7e-10
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 583 GTVKKLQLEKNVICDKCEGRGGKKGAAESC-PGCRGTGMTVTVQQFGPGMIQQIQTVCSE 641
G K++++ CD C G G K G P C G + Q +Q C
Sbjct: 1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHG-----SGQVQMRQGFFAVQQTCPH 55
Query: 642 CRGQGSRINPKDRCKTCNGKKTVR 665
C+G+G+ I KD C C+G V
Sbjct: 56 CQGRGTLI--KDPCNKCHGHGRVE 77
Score = 36.2 bits (83), Expect = 0.001
Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
Query: 240 GAVRKLALEKNVICSVCEGRGGKSKIVEKC-STCKGSGMTVQVQQIGPGMIQQVQHVCSD 298
G +++ + C VC G G K + TC G Q VQ C
Sbjct: 1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHG-----SGQVQMRQGFFAVQQTCPH 55
Query: 299 CKGQGERI 306
C+G+G I
Sbjct: 56 CQGRGTLI 63
Score = 35.1 bits (80), Expect = 0.004
Identities = 19/64 (29%), Positives = 22/64 (34%), Gaps = 14/64 (21%)
Query: 360 EKCSTCKGSGMT------------VQVQQIGPGMIQQVQHVCSDCKGQGERINPKDKCRT 407
E+C C GSG Q VQ C C+G+G I KD C
Sbjct: 12 EECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI--KDPCNK 69
Query: 408 CAGK 411
C G
Sbjct: 70 CHGH 73
Score = 25.5 bits (55), Expect = 9.8
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 251 VICSVCEGRGGKSKIVEKCSTCKGSGMT 278
C C+GRG + I + C+ C G G
Sbjct: 51 QTCPHCQGRG--TLIKDPCNKCHGHGRV 76
>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import
protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 74
Score = 52.4 bits (125), Expect = 2e-09
Identities = 25/54 (46%), Positives = 35/54 (64%)
Query: 657 TCNGKKTVRDRKILEVHIDKGMIDQQKIVFNGEGDQEPGLEHGDIIIVLEEKPH 710
K +RKILEVH++ GM D Q+IVF GE DQ P + GD++ ++ E+PH
Sbjct: 20 KGRTAKLALNRKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPH 73
Score = 25.8 bits (56), Expect = 5.1
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 564 RKGKDVVHQLTVSLEDLYRGTVKKLQLEKNVIC 596
++GKD+ H+++ SLE+LY+G KL L + ++
Sbjct: 2 QRGKDIKHEISASLEELYKGRTAKLALNRKILE 34
>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate
reductase), N-terminal domain {Shewanella oneidensis
[TaxId: 70863]}
Length = 90
Score = 50.2 bits (119), Expect = 2e-08
Identities = 10/79 (12%), Positives = 17/79 (21%), Gaps = 7/79 (8%)
Query: 592 KNVICDKCEGRGGKKGA----AESCPGCRGTGMTVTVQQFGPGMIQQIQTVCSECRGQGS 647
++ C+ C G C C G + C
Sbjct: 10 ESGGCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPHDGNLVCAD-CHAVHDMNV 68
Query: 648 RINPKDRCKTCNGKKTVRD 666
K C++C+
Sbjct: 69 GQ--KPTCESCHDDGRTSA 85
Score = 38.2 bits (88), Expect = 3e-04
Identities = 8/63 (12%), Positives = 13/63 (20%), Gaps = 5/63 (7%)
Query: 249 KNVICSVCEGRGGKSKI----VEKCSTCKGSGMTVQVQQIGPGMIQQVQHVCSDCKGQGE 304
++ C C G S +C +C G + C
Sbjct: 10 ESGGCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPHDGNLVCAD-CHAVHDMNV 68
Query: 305 RIN 307
Sbjct: 69 GQK 71
Score = 37.8 bits (87), Expect = 5e-04
Identities = 7/53 (13%), Positives = 11/53 (20%), Gaps = 3/53 (5%)
Query: 360 EKCSTCKGSGMTVQVQQIGPGMIQQVQHVCSDCKGQGERINPKDKCRTCAGKK 412
+C +C G + C K C +C
Sbjct: 32 AQCQSCHGKLSEMDAVHKPHDGNLVCAD-CHAVHDMNVGQ--KPTCESCHDDG 81
Score = 25.5 bits (55), Expect = 9.5
Identities = 6/29 (20%), Positives = 9/29 (31%), Gaps = 1/29 (3%)
Query: 253 CSVCEGRGGKSKIV-EKCSTCKGSGMTVQ 280
C+ C + C +C G T
Sbjct: 57 CADCHAVHDMNVGQKPTCESCHDDGRTSA 85
>d2cvca1 a.138.1.1 (A:40-544) 16-heme cytochrome c HmcA
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 505
Score = 31.7 bits (69), Expect = 0.40
Identities = 14/73 (19%), Positives = 21/73 (28%), Gaps = 2/73 (2%)
Query: 591 EKNVICDKCEGRGGKKGAAESCPGCRGTGMTVTVQQFGPGMIQQIQTVCSECRGQGSRIN 650
EK +C C C C G PG+ C C +
Sbjct: 433 EKGTLCQGCHHNSPASLTPPKCASCHGKPFDADRGD-RPGLKAAYHQQCMGCHDRMKIEK 491
Query: 651 PKDR-CKTCNGKK 662
P + C C+ ++
Sbjct: 492 PANTACVDCHKER 504
>d1hc1a1 a.85.1.1 (A:5-135) Hemocyanin, N-terminal domain {Spiny
lobster (Panulirus interruptus) [TaxId: 6735]}
Length = 131
Score = 30.1 bits (68), Expect = 0.46
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Query: 159 SLFDHIEILIPRFYPQFKEINKAYDVLSNPEKRRVYDQGGE---EAINQGGF 207
L D I P YP K+I + ++ L + + E + +N
Sbjct: 12 HLLDKI--YEPTKYPDLKDIAENFNPLGDTSIYNDHGAAVETLMKELNDHRL 61
>d1ynha1 d.126.1.7 (A:3-441) Succinylarginine dihydrolase
{Escherichia coli [TaxId: 562]}
Length = 439
Score = 31.2 bits (71), Expect = 0.61
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 155 VYGSSLFDHIEILIPRFYP--QFKEINKAYDVLSN-PEKRRVYDQGGEEAINQGGF 207
VYG + P YP Q +E ++A L+ ++ ++ Q + I+QG F
Sbjct: 193 VYGREEGNDTR---PSRYPARQTREASEAVARLNQVNPQQVIFAQQNPDVIDQGVF 245
>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 64
Score = 26.3 bits (58), Expect = 2.7
Identities = 1/22 (4%), Positives = 9/22 (40%)
Query: 686 FNGEGDQEPGLEHGDIIIVLEE 707
+ + + + G+ + ++
Sbjct: 11 YESRTETDLSFKKGERLQIVNN 32
>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo
sapiens) [TaxId: 9606]}
Length = 65
Score = 26.3 bits (58), Expect = 2.8
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 686 FNGEGDQEPGLEHGDIIIVLEEKPHPVFKRSGNN 719
+ ++ + GD ++VLEE RS
Sbjct: 13 YEAIHHEDLSFQKGDQMVVLEESGEWWKARSLAT 46
>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 57
Score = 26.2 bits (58), Expect = 3.0
Identities = 2/22 (9%), Positives = 7/22 (31%)
Query: 686 FNGEGDQEPGLEHGDIIIVLEE 707
+ + + G+ +L
Sbjct: 9 YEAITEDDLSFHKGEKFQILNS 30
>d1qb7a_ c.61.1.1 (A:) Adenine PRTase {Leishmania donovani [TaxId:
5661]}
Length = 236
Score = 28.5 bits (63), Expect = 3.1
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 7/43 (16%)
Query: 442 ELKKAYRKLALKYHPDKNPNEGEKFKQISMAYEVLSNPEKREL 484
LKK+YR Y P +P +F +S + +PE +
Sbjct: 21 LLKKSYRW----YSPVFSPRNVPRFADVS---SITESPETLKA 56
>d1erda_ a.10.1.1 (A:) ER-2 {Euplotes raikovi [TaxId: 5938]}
Length = 40
Score = 25.4 bits (55), Expect = 3.4
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 107 RKLALEKNVICSVCEGKLFVTCLGKT 132
+ +A ++ +C C+G L++TC+G T
Sbjct: 7 QAMASCEHTMCGYCQGPLYMTCIGIT 32
>d1joga_ a.24.16.2 (A:) Hypothetical protein HI0074 {Haemophilus
influenzae [TaxId: 727]}
Length = 135
Score = 27.2 bits (60), Expect = 4.5
Identities = 15/133 (11%), Positives = 36/133 (27%), Gaps = 10/133 (7%)
Query: 56 DELKKAYRTMAR-----KYHPDRDPKNEDKQQKNRKGKDVVHTLYVTMEELYSGAVRKLA 110
+ L A+ ++ + D + Q G + E +++
Sbjct: 3 NVLDAAFYSLEQTVVQISDRNWFDMQPSIVQDTLIAG--AIQKFEFVYELSLK-MMKRQL 59
Query: 111 LEKNVICSVCEGKLFVTCL--GKTQGLLGGRAHCLKFVSTEEETAQVYGSSLFDHIEILI 168
+ + F L GL+G + + + T+ Y + I
Sbjct: 60 QQDAINTDDIGAYGFKDILREALRFGLIGDMSKWVAYRDMRNITSHTYDQEKAMAVYAQI 119
Query: 169 PRFYPQFKEINKA 181
F + + +
Sbjct: 120 DDFLIESSFLLEQ 132
>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 25.9 bits (57), Expect = 4.7
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 686 FNGEGDQEPGLEHGDIIIVLEEKPH 710
F + LE G I+LE+
Sbjct: 11 FQATEAHDLRLERGQEYIILEKNDL 35
>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha
subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 83
Score = 26.3 bits (57), Expect = 5.2
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 686 FNGEGDQEPGLEHGDIIIVLEEKPHPVFKRSGNN 719
+ E +++ L GDI+ V + + G
Sbjct: 12 YKKEREEDIDLHLGDILTVNKGSLVALGFSDGQE 45
>d1xr4a2 c.124.1.2 (A:237-505) Putative citrate lyase alpha chain,
citF2 {Salmonella typhimurium [TaxId: 90371]}
Length = 269
Score = 27.1 bits (60), Expect = 7.7
Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 8/80 (10%)
Query: 303 GERINPKDKRVGNNLQMTQNIDLVEALCGFQRYIKTLDG--------RVIMIEVPGGRGG 354
G + + + L++ N ++ G + +I P RG
Sbjct: 118 GAACERLNVVMLSALEIDVNFNVNVMTGSNGVLRGASGGHSDTAAGADLTIITAPLVRGR 177
Query: 355 KSKIVEKCSTCKGSGMTVQV 374
+VEK T G +V V
Sbjct: 178 IPCVVEKVLTTVTPGASVDV 197
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.138 0.416
Gapped
Lambda K H
0.267 0.0294 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,426,686
Number of extensions: 180652
Number of successful extensions: 797
Number of sequences better than 10.0: 1
Number of HSP's gapped: 741
Number of HSP's successfully gapped: 71
Length of query: 858
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 765
Effective length of database: 1,130,706
Effective search space: 864990090
Effective search space used: 864990090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (27.0 bits)