Query psy10931
Match_columns 139
No_of_seqs 126 out of 996
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 22:11:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10931.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10931hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lkx_A Myosin IE heavy chain; 99.9 6.7E-28 2.3E-32 218.8 5.6 90 2-91 397-489 (697)
2 2v26_A Myosin VI; calmodulin-b 99.9 9.5E-28 3.3E-32 220.0 6.1 89 2-90 463-554 (784)
3 4anj_A Unconventional myosin-V 99.9 4.2E-27 1.4E-31 221.1 6.4 90 2-91 467-559 (1052)
4 1w7j_A Myosin VA; motor protei 99.9 5.2E-27 1.8E-31 215.5 5.9 90 2-92 448-541 (795)
5 1w9i_A Myosin II heavy chain; 99.9 1.3E-26 4.4E-31 212.4 6.5 92 2-93 465-562 (770)
6 4db1_A Myosin-7; S1DC, cardiac 99.9 8.2E-27 2.8E-31 214.0 4.9 90 2-92 472-566 (783)
7 2dfs_A Myosin-5A; myosin-V, in 99.9 1.6E-26 5.5E-31 217.4 5.6 90 2-92 448-541 (1080)
8 1kk8_A Myosin heavy chain, str 99.9 1.7E-26 5.9E-31 213.0 5.6 91 2-93 471-566 (837)
9 2ycu_A Non muscle myosin 2C, a 99.9 1.9E-26 6.6E-31 215.5 5.4 92 2-93 444-541 (995)
10 1i84_S Smooth muscle myosin he 99.9 1.8E-26 6.2E-31 217.4 5.1 92 2-93 475-572 (1184)
11 1g8x_A Myosin II heavy chain f 99.9 4.2E-26 1.4E-30 213.6 6.1 92 2-93 465-562 (1010)
12 2i7u_A Four-alpha-helix bundle 39.2 24 0.00082 22.2 2.7 8 123-130 29-36 (62)
13 1y4m_A HERV-FRD_6P24.1 proviru 24.8 17 0.00057 22.8 0.2 28 44-71 24-51 (53)
14 1mof_A Moloney murine leukemia 21.3 20 0.00069 22.6 0.0 28 44-71 26-53 (55)
No 1
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=99.94 E-value=6.7e-28 Score=218.80 Aligned_cols=90 Identities=34% Similarity=0.547 Sum_probs=86.4
Q ss_pred ccchhhhhhhhHHHHHHHHHHhhHHHHHHhhhhCCeeeecccCchHHHHHHHhcCCCcccccchHHhcccCCCchh---h
Q psy10931 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKKRRDEKEE---K 78 (139)
Q Consensus 2 SFEQLcINyaNErLq~~f~~~iF~~eqeeY~~EGI~w~~i~f~DN~~cLdLI~~kP~GLLsLLDEEc~fPkatDe~---~ 78 (139)
||||||||||||+||++|++++|+.+|++|..|||.|..|+|.||++|||||+++|+|||+||||||++|++||.+ +
T Consensus 397 sFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dN~~~idLie~kp~GilslLDEec~~p~~tD~~f~~k 476 (697)
T 1lkx_A 397 SFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLIAKSTDQTFLDS 476 (697)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHTTSSSSSHHHHHHHHHHSTTCCHHHHHHH
T ss_pred CHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCHHHHHHHhcccCChhhhhHHhhCCCCCChHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999998 8
Q ss_pred hcccCCCCccccc
Q psy10931 79 EGGREGGEEMKGK 91 (139)
Q Consensus 79 ~~~~~~~~~~~~~ 91 (139)
+..+++.|+-+-+
T Consensus 477 l~~~~~~~~~f~~ 489 (697)
T 1lkx_A 477 ICKQFEKNPHLQS 489 (697)
T ss_dssp HHHHSSSSTTEEC
T ss_pred HHHHhcCCCcccc
Confidence 8888999887655
No 2
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=99.94 E-value=9.5e-28 Score=220.04 Aligned_cols=89 Identities=33% Similarity=0.618 Sum_probs=84.8
Q ss_pred ccchhhhhhhhHHHHHHHHHHhhHHHHHHhhhhCCeeeecccCchHHHHHHHhcCCCcccccchHHhcccCCCchh---h
Q psy10931 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKKRRDEKEE---K 78 (139)
Q Consensus 2 SFEQLcINyaNErLq~~f~~~iF~~eqeeY~~EGI~w~~i~f~DN~~cLdLI~~kP~GLLsLLDEEc~fPkatDe~---~ 78 (139)
||||||||||||+||++|++++|+.+|++|..|||.|..|+|.||++||+||+++|+|||+||||||++|++||.+ +
T Consensus 463 sFEQlcINyaNEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~DN~~~idLie~kp~GIlslLDEe~~~p~~tD~~f~~k 542 (784)
T 2v26_A 463 SFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSA 542 (784)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSSCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCcccccccChHHHHHHHhhccccHHHHHHHHhcCCCCChHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999998 7
Q ss_pred hcccCCCCcccc
Q psy10931 79 EGGREGGEEMKG 90 (139)
Q Consensus 79 ~~~~~~~~~~~~ 90 (139)
+..+++.|+-+.
T Consensus 543 l~~~~~~~~~~~ 554 (784)
T 2v26_A 543 VHQKHKDHFRLS 554 (784)
T ss_dssp HHHHTTTCTTEE
T ss_pred HHHHhCCCcccc
Confidence 888888887543
No 3
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=99.93 E-value=4.2e-27 Score=221.14 Aligned_cols=90 Identities=32% Similarity=0.604 Sum_probs=86.0
Q ss_pred ccchhhhhhhhHHHHHHHHHHhhHHHHHHhhhhCCeeeecccCchHHHHHHHhcCCCcccccchHHhcccCCCchh---h
Q psy10931 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKKRRDEKEE---K 78 (139)
Q Consensus 2 SFEQLcINyaNErLq~~f~~~iF~~eqeeY~~EGI~w~~i~f~DN~~cLdLI~~kP~GLLsLLDEEc~fPkatDe~---~ 78 (139)
||||||||||||+||++|++++|+.++++|..|||+|..|+|.||++|||||+++|+|||+||||||++|++||++ +
T Consensus 467 sFEQLCINyaNEkLQq~Fn~~vF~~EqeeY~~EgI~w~~I~f~DN~~~idLie~kp~GIl~lLDEe~~~p~~tD~~f~~k 546 (1052)
T 4anj_A 467 SFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSA 546 (1052)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSSCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCcccCCcCCcHHHHHHHHcCcccHHHHHHHHhcCCCCcHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999998 8
Q ss_pred hcccCCCCccccc
Q psy10931 79 EGGREGGEEMKGK 91 (139)
Q Consensus 79 ~~~~~~~~~~~~~ 91 (139)
+..+++.|+-+.+
T Consensus 547 l~~~~~~~~~~~~ 559 (1052)
T 4anj_A 547 VHQKHKDHFRLSI 559 (1052)
T ss_dssp HHHTTTTCTTEEC
T ss_pred HHHHhccCccccC
Confidence 8889998876643
No 4
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=99.93 E-value=5.2e-27 Score=215.49 Aligned_cols=90 Identities=46% Similarity=0.729 Sum_probs=84.9
Q ss_pred ccchhhhhhhhHHHHHHHHHHhhHHHHHHhhhhCCeeeecccCchHHHHHHHhcCCCcccccchHHhcccCCCchh---h
Q psy10931 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKKRRDEKEE---K 78 (139)
Q Consensus 2 SFEQLcINyaNErLq~~f~~~iF~~eqeeY~~EGI~w~~i~f~DN~~cLdLI~~kP~GLLsLLDEEc~fPkatDe~---~ 78 (139)
||||||||||||+||++|++++|+.+|++|..|||+|..|+|.||++|||||+++ +|||+||||||++|++||.+ +
T Consensus 448 sFEQlcINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~DN~~~idLie~~-~GIlslLDEec~~p~~tD~~f~~k 526 (795)
T 1w7j_A 448 SFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKGSDDTWAQK 526 (795)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCCCCCHHHHHHHHST-TSHHHHHHHHHTSTTCCHHHHHHH
T ss_pred CHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCcccccCccccHHHHHHHHhc-CCHHHhhhhhccCCCCChHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999986 99999999999999999998 7
Q ss_pred hcccC-CCCcccccc
Q psy10931 79 EGGRE-GGEEMKGKE 92 (139)
Q Consensus 79 ~~~~~-~~~~~~~~~ 92 (139)
+..++ +.|+.+-+.
T Consensus 527 l~~~~~~~~~~f~~p 541 (795)
T 1w7j_A 527 LYNTHLNKCALFEKP 541 (795)
T ss_dssp HHHHHTTTCTTEECC
T ss_pred HHHHhhccCCccccC
Confidence 77776 888877664
No 5
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=99.93 E-value=1.3e-26 Score=212.39 Aligned_cols=92 Identities=40% Similarity=0.729 Sum_probs=84.5
Q ss_pred ccchhhhhhhhHHHHHHHHHHhhHHHHHHhhhhCCeeeeccc-CchHHHHHHHhcC-CCcccccchHHhcccCCCchh--
Q psy10931 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK-PNGLLCVLDDQAKKRRDEKEE-- 77 (139)
Q Consensus 2 SFEQLcINyaNErLq~~f~~~iF~~eqeeY~~EGI~w~~i~f-~DN~~cLdLI~~k-P~GLLsLLDEEc~fPkatDe~-- 77 (139)
||||||||||||+||++|++++|+.+|++|..|||.|..|+| .||++||+||+++ |+|||+||||||++|++||.+
T Consensus 465 sFEQlCINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek~~p~GilslLDEec~~p~~tD~~f~ 544 (770)
T 1w9i_A 465 SFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLI 544 (770)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGGGHHHHHHHHCTTTTCHHHHHHHHHSSSSCCHHHHH
T ss_pred CHHHHHHHhhHHHHHHHHHhhhhHHHHHHhhccCCCceeeccccCcHHHHHHHhCCCCCchhhhhhhhhCCCCCChHHHH
Confidence 799999999999999999999999999999999999999999 5999999999984 999999999999999999998
Q ss_pred -h-hcccCCCCccccccc
Q psy10931 78 -K-EGGREGGEEMKGKEE 93 (139)
Q Consensus 78 -~-~~~~~~~~~~~~~~~ 93 (139)
+ +..++|.||.+-+..
T Consensus 545 ~kL~~~~~~~~~~f~~p~ 562 (770)
T 1w9i_A 545 TKLHSHFSKKNAKYEEPR 562 (770)
T ss_dssp HHHHHHHTTTSTTEECCS
T ss_pred HHHHHHhcCCCCCccCCC
Confidence 5 345688888776643
No 6
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=99.93 E-value=8.2e-27 Score=213.98 Aligned_cols=90 Identities=41% Similarity=0.755 Sum_probs=81.9
Q ss_pred ccchhhhhhhhHHHHHHHHHHhhHHHHHHhhhhCCeeeeccc-CchHHHHHHHhcCCCcccccchHHhcccCCCchh---
Q psy10931 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQAKKRRDEKEE--- 77 (139)
Q Consensus 2 SFEQLcINyaNErLq~~f~~~iF~~eqeeY~~EGI~w~~i~f-~DN~~cLdLI~~kP~GLLsLLDEEc~fPkatDe~--- 77 (139)
||||||||||||+||++|++++|+.+|++|..|||.|..|+| .||++|||||++ |+|||+||||||++|++||.+
T Consensus 472 sFEQlCINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~~Dn~~~idLiek-p~Gil~lLDEec~~p~~tD~tf~~ 550 (783)
T 4db1_A 472 SFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIEK-PMGIMSILEEECMFPKATDMTFKA 550 (783)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCGGGGGHHHHHHHHS-TTSHHHHHCC-TTCTTCCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcccccccCChHHHHHHHhC-CCchHhhhhHHhcCCCCCHHHHHH
Confidence 799999999999999999999999999999999999999999 599999999995 899999999999999999998
Q ss_pred hhcccC-CCCcccccc
Q psy10931 78 KEGGRE-GGEEMKGKE 92 (139)
Q Consensus 78 ~~~~~~-~~~~~~~~~ 92 (139)
++...+ |.|+-+.+.
T Consensus 551 kl~~~~~~~~~~f~~~ 566 (783)
T 4db1_A 551 KLFDNHLGKSANFQKP 566 (783)
T ss_dssp HHHHHHTTTCTTEECC
T ss_pred HHHHHhcCCCCCccCC
Confidence 666654 888876544
No 7
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=99.92 E-value=1.6e-26 Score=217.42 Aligned_cols=90 Identities=46% Similarity=0.729 Sum_probs=85.0
Q ss_pred ccchhhhhhhhHHHHHHHHHHhhHHHHHHhhhhCCeeeecccCchHHHHHHHhcCCCcccccchHHhcccCCCchh---h
Q psy10931 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKKRRDEKEE---K 78 (139)
Q Consensus 2 SFEQLcINyaNErLq~~f~~~iF~~eqeeY~~EGI~w~~i~f~DN~~cLdLI~~kP~GLLsLLDEEc~fPkatDe~---~ 78 (139)
||||||||||||+||++|++++|+.++++|..|||+|..|+|.||++|||||+++ +|||+||||||++|++||.+ +
T Consensus 448 sFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dn~~~idlie~~-~Gil~lLdee~~~p~~tD~~f~~k 526 (1080)
T 2dfs_A 448 SFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKGSDDTWAQK 526 (1080)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCCCCCCCHHHHHHHHST-TSHHHHHHHHTTSTTCCHHHHHHH
T ss_pred CHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhcCCccccccccccHHHHHHHhcC-CceeeeccccccCCCCChHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999986 99999999999999999998 7
Q ss_pred hcccC-CCCcccccc
Q psy10931 79 EGGRE-GGEEMKGKE 92 (139)
Q Consensus 79 ~~~~~-~~~~~~~~~ 92 (139)
+..++ +.||.+-+.
T Consensus 527 l~~~~~~~~~~f~~p 541 (1080)
T 2dfs_A 527 LYNTHLNKCALFEKP 541 (1080)
T ss_dssp HHHHHBTTBSSEECC
T ss_pred HHHHhhcCCCCccCC
Confidence 77776 888877664
No 8
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=99.92 E-value=1.7e-26 Score=212.98 Aligned_cols=91 Identities=44% Similarity=0.829 Sum_probs=84.0
Q ss_pred ccchhhhhhhhHHHHHHHHHHhhHHHHHHhhhhCCeeeeccc-CchHHHHHHHhcCCCcccccchHHhcccCCCchh---
Q psy10931 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQAKKRRDEKEE--- 77 (139)
Q Consensus 2 SFEQLcINyaNErLq~~f~~~iF~~eqeeY~~EGI~w~~i~f-~DN~~cLdLI~~kP~GLLsLLDEEc~fPkatDe~--- 77 (139)
||||||||||||+||++|++++|+.+|++|..|||+|..|+| .||++|||||++ |+|||+||||||++|++||.+
T Consensus 471 sFEQlcINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek-p~GIlslLDEec~~p~~tD~tf~~ 549 (837)
T 1kk8_A 471 SFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEK-PMGILSILEEECMFPKADDKSFQD 549 (837)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCCCCHHHHHHHHHHHS-TTSHHHHHHHHTTCTTCCHHHHHH
T ss_pred cHHHHHHHHhhHHHHHHHHHhhhHHHHHHhhhcCCceeecccccCHHHHHHHHhc-CCcHHHHHHHHhcCCCCChHHHHH
Confidence 799999999999999999999999999999999999999999 599999999996 999999999999999999998
Q ss_pred h-hcccCCCCccccccc
Q psy10931 78 K-EGGREGGEEMKGKEE 93 (139)
Q Consensus 78 ~-~~~~~~~~~~~~~~~ 93 (139)
+ +..++|.||.+-+..
T Consensus 550 kl~~~~~~~~~~f~~p~ 566 (837)
T 1kk8_A 550 KLYQNHMGKNRMFTKPG 566 (837)
T ss_dssp HHHHHHTTTCSSEECCC
T ss_pred HHHHHhcCCCcCccCCC
Confidence 5 345778888776643
No 9
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=99.92 E-value=1.9e-26 Score=215.46 Aligned_cols=92 Identities=41% Similarity=0.769 Sum_probs=85.6
Q ss_pred ccchhhhhhhhHHHHHHHHHHhhHHHHHHhhhhCCeeeeccc-CchHHHHHHHhc--CCCcccccchHHhcccCCCchh-
Q psy10931 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG--KPNGLLCVLDDQAKKRRDEKEE- 77 (139)
Q Consensus 2 SFEQLcINyaNErLq~~f~~~iF~~eqeeY~~EGI~w~~i~f-~DN~~cLdLI~~--kP~GLLsLLDEEc~fPkatDe~- 77 (139)
||+|||||||||+||++|++++|+.++++|..|||+|..|+| .||++||+||++ +|+|||+||||||++|++||.+
T Consensus 444 sfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~p~Gil~lLdee~~~p~~tD~~f 523 (995)
T 2ycu_A 444 SFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPGLLALLDEECWFPKATDKSF 523 (995)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHHHHCCSSSCCHHHHHHHSSSSTTCCHHHH
T ss_pred hHHHHHHHhhHHHHHHHHHHhhhHHHHHHHhccCCCccccccccChHHHHHHHhccCCCCchhhhhHHHhcCCCCchHHH
Confidence 799999999999999999999999999999999999999999 699999999997 4999999999999999999998
Q ss_pred --hhcccCCCCccccccc
Q psy10931 78 --KEGGREGGEEMKGKEE 93 (139)
Q Consensus 78 --~~~~~~~~~~~~~~~~ 93 (139)
++...+|.||.+-+.-
T Consensus 524 ~~kl~~~~~~~~~f~~~~ 541 (995)
T 2ycu_A 524 VEKVAQEQGGHPKFQRPR 541 (995)
T ss_dssp HHHHHHHHTTSTTEECCC
T ss_pred HHHHHHhcCCCCCcccCC
Confidence 7777888888776543
No 10
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.92 E-value=1.8e-26 Score=217.37 Aligned_cols=92 Identities=41% Similarity=0.729 Sum_probs=84.8
Q ss_pred ccchhhhhhhhHHHHHHHHHHhhHHHHHHhhhhCCeeeeccc-CchHHHHHHHhcC--CCcccccchHHhcccCCCchh-
Q psy10931 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK--PNGLLCVLDDQAKKRRDEKEE- 77 (139)
Q Consensus 2 SFEQLcINyaNErLq~~f~~~iF~~eqeeY~~EGI~w~~i~f-~DN~~cLdLI~~k--P~GLLsLLDEEc~fPkatDe~- 77 (139)
||+|||||||||+||++|++++|+.++++|..|||+|.+|+| .||++||+||+++ |+|||+||||+|++|++||.+
T Consensus 475 sfeQlciNy~nEkLq~~f~~~~f~~eq~ey~~Egi~~~~i~~~~dn~~~~~lie~~~~~~Gil~lLdee~~~p~~td~~~ 554 (1184)
T 1i84_S 475 SFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWFPKATDTSF 554 (1184)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCSCCCCCCCCCCHHHHHTTSCCSSSCCHHHHHHHTTSCTTCCHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCccccccCCCcHHHHHHHhCCCCCCCchhhhhhhhCCCCCChHHH
Confidence 799999999999999999999999999999999999999999 6999999999962 349999999999999999998
Q ss_pred --hhcccCCCCccccccc
Q psy10931 78 --KEGGREGGEEMKGKEE 93 (139)
Q Consensus 78 --~~~~~~~~~~~~~~~~ 93 (139)
++...||.||.+-+..
T Consensus 555 ~~kl~~~~~~~~~~~~~~ 572 (1184)
T 1i84_S 555 VEKLIQEQGNHAKFQKSK 572 (1184)
T ss_dssp HHHHHHHTSSCTTEEECS
T ss_pred HHHHHHHhCCCCCccCCC
Confidence 7888889998776543
No 11
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=99.92 E-value=4.2e-26 Score=213.59 Aligned_cols=92 Identities=40% Similarity=0.714 Sum_probs=85.8
Q ss_pred ccchhhhhhhhHHHHHHHHHHhhHHHHHHhhhhCCeeeeccc-CchHHHHHHHhc-CCCcccccchHHhcccCCCchh--
Q psy10931 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPNGLLCVLDDQAKKRRDEKEE-- 77 (139)
Q Consensus 2 SFEQLcINyaNErLq~~f~~~iF~~eqeeY~~EGI~w~~i~f-~DN~~cLdLI~~-kP~GLLsLLDEEc~fPkatDe~-- 77 (139)
||+|||||||||+||++|++++|+.++++|..|||.|..|+| .||++||+||++ +|+|||+||||||++|++||.+
T Consensus 465 sfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~~Gil~lLdee~~~p~~td~~f~ 544 (1010)
T 1g8x_A 465 SFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLI 544 (1010)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCCSHHHHHHHHCTTTTCHHHHHHHHTTSSSCCHHHHH
T ss_pred cHHHHHHHhhhHHHHHHHHHHhhHHHHHHhhccCCCccccccccChHHHHHHHhcCCCCeeehhhhHHhCCCCCChHHHH
Confidence 799999999999999999999999999999999999999999 599999999998 4999999999999999999998
Q ss_pred -hhcccCC-CCccccccc
Q psy10931 78 -KEGGREG-GEEMKGKEE 93 (139)
Q Consensus 78 -~~~~~~~-~~~~~~~~~ 93 (139)
++..++| .||.+.+..
T Consensus 545 ~kl~~~~~~~~~~f~~~~ 562 (1010)
T 1g8x_A 545 TKLHSHFSKKNAKYEEPR 562 (1010)
T ss_dssp HHHHHHHTTTCTTEECCT
T ss_pred HHHHHHhcCCCCCcccCC
Confidence 7888888 888776543
No 12
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=39.22 E-value=24 Score=22.19 Aligned_cols=8 Identities=88% Similarity=1.763 Sum_probs=3.5
Q ss_pred cCCCCCCc
Q psy10931 123 EGGGGGGE 130 (139)
Q Consensus 123 ~~~~~~~~ 130 (139)
.||||||+
T Consensus 29 ggggggge 36 (62)
T 2i7u_A 29 GGGGGGGE 36 (62)
T ss_dssp SSCSSSCH
T ss_pred CCCCchHH
Confidence 34444444
No 13
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=24.80 E-value=17 Score=22.81 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=23.9
Q ss_pred CchHHHHHHHhcCCCcccccchHHhccc
Q psy10931 44 SDNTLCLQLVEGKPNGLLCVLDDQAKKR 71 (139)
Q Consensus 44 ~DN~~cLdLI~~kP~GLLsLLDEEc~fP 71 (139)
..|.-.+|++.....|+=..|.++|.|-
T Consensus 24 lQNRraLDlL~a~~GG~C~~l~e~CC~y 51 (53)
T 1y4m_A 24 LQNRRGLDMLTAAQGGICLALDEKCCFW 51 (53)
T ss_dssp HHHHHHHHHHTGGGTSHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHHHhCCccHHhcCchhcc
Confidence 3578899999888899999999999873
No 14
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=21.31 E-value=20 Score=22.60 Aligned_cols=28 Identities=25% Similarity=0.208 Sum_probs=24.0
Q ss_pred CchHHHHHHHhcCCCcccccchHHhccc
Q psy10931 44 SDNTLCLQLVEGKPNGLLCVLDDQAKKR 71 (139)
Q Consensus 44 ~DN~~cLdLI~~kP~GLLsLLDEEc~fP 71 (139)
..|.-.+|++.....|+=..|.++|.|-
T Consensus 26 lQNRraLD~L~a~~GG~C~~l~e~CCfy 53 (55)
T 1mof_A 26 LQNRRGLDLLFLKEGGLCAALKEECAFY 53 (55)
T ss_dssp HHHHHHHHHHTGGGTCHHHHHTSCCCCC
T ss_pred HHHHHHHHHHHHHhCCccHHHcCchhcc
Confidence 3578899999888899999999999873
Done!