RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10931
(139 letters)
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 124 bits (313), Expect = 4e-34
Identities = 29/67 (43%), Positives = 44/67 (65%)
Query: 3 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 62
FEQ CINY NE LQ +FN+ + + EQE Y KEG+ + + DN C+ L+E + G+L
Sbjct: 464 FEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILD 523
Query: 63 VLDDQAK 69
+LD++ +
Sbjct: 524 ILDEENR 530
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 122 bits (308), Expect = 2e-33
Identities = 31/65 (47%), Positives = 44/65 (67%)
Query: 3 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 62
FEQL IN+ NE LQ F + + EQEEY +EGI W++IE+ +N +L+E KP GL+
Sbjct: 398 FEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLIS 457
Query: 63 VLDDQ 67
+LD+
Sbjct: 458 LLDEA 462
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 117 bits (296), Expect = 6e-32
Identities = 37/65 (56%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 3 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 62
FEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E G+L
Sbjct: 449 FEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIE-AKMGVLD 507
Query: 63 VLDDQ 67
+LD++
Sbjct: 508 LLDEE 512
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 111 bits (280), Expect = 9e-30
Identities = 36/67 (53%), Positives = 48/67 (71%), Gaps = 2/67 (2%)
Query: 3 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PNGL 60
FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P G+
Sbjct: 466 FEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGI 525
Query: 61 LCVLDDQ 67
L +LD+Q
Sbjct: 526 LALLDEQ 532
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 111 bits (279), Expect = 1e-29
Identities = 37/66 (56%), Positives = 48/66 (72%), Gaps = 2/66 (3%)
Query: 3 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGLL 61
FEQLCINY NE LQ +FN H+F EQEEY KEGI W I+F D +C+ L+E KP G+L
Sbjct: 472 FEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIE-KPMGIL 530
Query: 62 CVLDDQ 67
+L+++
Sbjct: 531 SILEEE 536
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 110 bits (276), Expect = 3e-29
Identities = 35/66 (53%), Positives = 47/66 (71%), Gaps = 2/66 (3%)
Query: 3 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGLL 61
FEQLCIN+ NE LQ +FN H+F EQEEY KEGI W I+F D C+ L+E KP G++
Sbjct: 473 FEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIE-KPMGIM 531
Query: 62 CVLDDQ 67
+L+++
Sbjct: 532 SILEEE 537
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 107 bits (270), Expect = 2e-28
Identities = 37/65 (56%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 3 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 62
FEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E G+L
Sbjct: 449 FEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIE-AKMGVLD 507
Query: 63 VLDDQ 67
+LD++
Sbjct: 508 LLDEE 512
Score = 33.9 bits (78), Expect = 0.013
Identities = 16/111 (14%), Positives = 33/111 (29%), Gaps = 9/111 (8%)
Query: 27 EQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKKRRDEKEEKEGGREGGE 86
Q+ R + + LQ C AK+ + + + E +
Sbjct: 870 IQKHVRGWLARVHYHRTLKAIVYLQC---------CYRRMMAKRELKKLKIEARSVERYK 920
Query: 87 EMKGKEENGEEDEVEEGEEEEEKKKEEKAKKKEQEEEGGGGGGEQEKEEER 137
++ EN + +E+ ++ K K E + + ER
Sbjct: 921 KLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVER 971
Score = 28.5 bits (64), Expect = 0.77
Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 64 LDDQAKKRRDEKEEKEGGREGGEEMKGKEENGEEDEVEEGEEEE---EKKKEEKAKKKEQ 120
L ++ K R E + + ++ EE K ++ E V E +E+ + +KEE ++
Sbjct: 989 LQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHD 1048
Query: 121 EEEGGGGGGEQEKEEERE 138
+ + E++ EE +
Sbjct: 1049 QAKEITETMEKKLVEETK 1066
Score = 26.2 bits (58), Expect = 4.1
Identities = 13/57 (22%), Positives = 23/57 (40%)
Query: 67 QAKKRRDEKEEKEGGREGGEEMKGKEENGEEDEVEEGEEEEEKKKEEKAKKKEQEEE 123
++ R E+E + +EE + + + E+K EE A K + E E
Sbjct: 966 RSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE 1022
Score = 25.8 bits (57), Expect = 6.1
Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 64 LDDQAKKRRDEKEEKEGGREGGEEMKGKEENGEEDEVEEGEEEEE--KKKEEKAKKKEQE 121
L+++ + + + +E+ + E E E E+ + E + EE+AK
Sbjct: 926 LENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNR 985
Query: 122 EE 123
Sbjct: 986 VL 987
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 105 bits (264), Expect = 1e-27
Identities = 35/68 (51%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
Query: 3 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEG--KPNG 59
FEQLCINY NE LQ FN +F EQEEY +EGI W ++F D C+ L+E P G
Sbjct: 445 FEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPG 504
Query: 60 LLCVLDDQ 67
LL +LD++
Sbjct: 505 LLALLDEE 512
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 103 bits (260), Expect = 5e-27
Identities = 36/67 (53%), Positives = 48/67 (71%), Gaps = 2/67 (2%)
Query: 3 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PNGL 60
FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P G+
Sbjct: 466 FEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGI 525
Query: 61 LCVLDDQ 67
L +LD+Q
Sbjct: 526 LALLDEQ 532
Score = 28.9 bits (65), Expect = 0.62
Identities = 6/55 (10%), Positives = 15/55 (27%)
Query: 67 QAKKRRDEKEEKEGGREGGEEMKGKEENGEEDEVEEGEEEEEKKKEEKAKKKEQE 121
+ + + ++ G + + E + E E +K E
Sbjct: 955 ELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHHH 1009
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 93.7 bits (233), Expect = 2e-23
Identities = 35/71 (49%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEG--KPN 58
+FEQLCINY NE LQ FN +F EQEEY +EGI W I+F D C++L+E P
Sbjct: 475 SFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPP 534
Query: 59 GLLCVLDDQAK 69
G+L +LD++
Sbjct: 535 GVLALLDEECW 545
Score = 27.5 bits (61), Expect = 1.9
Identities = 14/61 (22%), Positives = 30/61 (49%)
Query: 63 VLDDQAKKRRDEKEEKEGGREGGEEMKGKEENGEEDEVEEGEEEEEKKKEEKAKKKEQEE 122
+L ++ + + E E R K + E + EEEEE+ ++ +A+KK+ ++
Sbjct: 896 LLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQ 955
Query: 123 E 123
+
Sbjct: 956 Q 956
Score = 26.3 bits (58), Expect = 4.0
Identities = 12/55 (21%), Positives = 24/55 (43%)
Query: 69 KKRRDEKEEKEGGREGGEEMKGKEENGEEDEVEEGEEEEEKKKEEKAKKKEQEEE 123
+ E EE ++ + + E +EE EE ++ + EK K ++Q +
Sbjct: 905 TELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLD 959
Score = 26.3 bits (58), Expect = 4.0
Identities = 13/75 (17%), Positives = 30/75 (40%)
Query: 64 LDDQAKKRRDEKEEKEGGREGGEEMKGKEENGEEDEVEEGEEEEEKKKEEKAKKKEQEEE 123
+ Q ++ EE+E R+ + K + + ++ E++ + ++K EE
Sbjct: 953 MQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEER 1012
Query: 124 GGGGGGEQEKEEERE 138
+EEE+
Sbjct: 1013 VSDLTTNLAEEEEKA 1027
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 38.2 bits (89), Expect = 3e-04
Identities = 10/63 (15%), Positives = 19/63 (30%)
Query: 72 RDEKEEKEGGREGGEEMKGKEENGEEDEVEEGEEEEEKKKEEKAKKKEQEEEGGGGGGEQ 131
R EE E + + +E E E + EE + ++ G
Sbjct: 175 RLTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNS 234
Query: 132 EKE 134
+ +
Sbjct: 235 DAQ 237
Score = 35.1 bits (81), Expect = 0.004
Identities = 11/59 (18%), Positives = 15/59 (25%)
Query: 67 QAKKRRDEKEEKEGGREGGEEMKGKEENGEEDEVEEGEEEEEKKKEEKAKKKEQEEEGG 125
+ E E + G E E +E EE K E + E
Sbjct: 175 RLTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDN 233
Score = 33.2 bits (76), Expect = 0.016
Identities = 9/63 (14%), Positives = 17/63 (26%)
Query: 71 RRDEKEEKEGGREGGEEMKGKEENGEEDEVEEGEEEEEKKKEEKAKKKEQEEEGGGGGGE 130
R +E + + E+ E E + +E KA+ E
Sbjct: 175 RLTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNS 234
Query: 131 QEK 133
+
Sbjct: 235 DAQ 237
Score = 32.4 bits (74), Expect = 0.032
Identities = 8/50 (16%), Positives = 13/50 (26%)
Query: 89 KGKEENGEEDEVEEGEEEEEKKKEEKAKKKEQEEEGGGGGGEQEKEEERE 138
+ E E + E + E EG E + E +
Sbjct: 175 RLTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASED 224
Score = 30.9 bits (70), Expect = 0.100
Identities = 9/44 (20%), Positives = 16/44 (36%)
Query: 96 EEDEVEEGEEEEEKKKEEKAKKKEQEEEGGGGGGEQEKEEEREG 139
E EV+ + E +++ + G E+ K E E
Sbjct: 181 LEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASED 224
Score = 30.9 bits (70), Expect = 0.11
Identities = 7/44 (15%), Positives = 14/44 (31%)
Query: 96 EEDEVEEGEEEEEKKKEEKAKKKEQEEEGGGGGGEQEKEEEREG 139
E+ E + + + E+ E G +E + E
Sbjct: 178 AEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEA 221
Score = 28.9 bits (65), Expect = 0.44
Identities = 8/44 (18%), Positives = 12/44 (27%)
Query: 96 EEDEVEEGEEEEEKKKEEKAKKKEQEEEGGGGGGEQEKEEEREG 139
EE E E + +E E G E+ +
Sbjct: 179 EELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEAS 222
Score = 28.9 bits (65), Expect = 0.47
Identities = 7/45 (15%), Positives = 15/45 (33%)
Query: 95 GEEDEVEEGEEEEEKKKEEKAKKKEQEEEGGGGGGEQEKEEEREG 139
+E+E + + A + +E G+ EE +
Sbjct: 176 LTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAE 220
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 38.3 bits (88), Expect = 4e-04
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 69 KKRRDEKEEKEGGREGGEEMKGKEENGEEDEVEEGEEEEEKKKEEKAKKKEQEEEG 124
K R +K +KE G E+ K EE +E E + +E K+ +E+ K + +
Sbjct: 821 AKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGIKETKENDEEFYKNKYSSKP 876
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 33.8 bits (76), Expect = 0.012
Identities = 13/65 (20%), Positives = 21/65 (32%)
Query: 74 EKEEKEGGREGGEEMKGKEENGEEDEVEEGEEEEEKKKEEKAKKKEQEEEGGGGGGEQEK 133
E + ++ + E E E K EEKA + E + +K
Sbjct: 59 ENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDK 118
Query: 134 EEERE 138
E E +
Sbjct: 119 ETEAK 123
Score = 28.4 bits (62), Expect = 0.92
Identities = 11/72 (15%), Positives = 22/72 (30%), Gaps = 2/72 (2%)
Query: 67 QAKKRRDEKEEKEGGREGGEEMKGKEENGEEDEVEEGEEEEEKKKEEKAKKKEQEEEGGG 126
A + + E E + EE E E + + K+ K+ + +
Sbjct: 70 TASETASPASNEAATTETAEAASAAKP--EEKASEVVAETPSAEAKPKSDKETEAKPEAT 127
Query: 127 GGGEQEKEEERE 138
G++ K
Sbjct: 128 NQGDESKPAAEA 139
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Length = 252
Score = 31.8 bits (72), Expect = 0.048
Identities = 12/58 (20%), Positives = 20/58 (34%)
Query: 81 GREGGEEMKGKEENGEEDEVEEGEEEEEKKKEEKAKKKEQEEEGGGGGGEQEKEEERE 138
R + + EE E++ E+A +E EE +E+ E E
Sbjct: 184 LRGALVDRTQPWSIMPDLYFYRDPEEVEQQVAEEATTEEAGEEEAKEEVTEEQAEATE 241
Score = 29.1 bits (65), Expect = 0.37
Identities = 10/62 (16%), Positives = 21/62 (33%)
Query: 75 KEEKEGGREGGEEMKGKEENGEEDEVEEGEEEEEKKKEEKAKKKEQEEEGGGGGGEQEKE 134
+ + M + +EVE+ EE +E ++ ++E + E
Sbjct: 185 RGALVDRTQPWSIMPDLYFYRDPEEVEQQVAEEATTEEAGEEEAKEEVTEEQAEATEWAE 244
Query: 135 EE 136
E
Sbjct: 245 EN 246
Score = 26.0 bits (57), Expect = 4.0
Identities = 7/63 (11%), Positives = 21/63 (33%)
Query: 76 EEKEGGREGGEEMKGKEENGEEDEVEEGEEEEEKKKEEKAKKKEQEEEGGGGGGEQEKEE 135
+ + + + + EE E++ ++ + +E+ +E + E
Sbjct: 183 RLRGALVDRTQPWSIMPDLYFYRDPEEVEQQVAEEATTEEAGEEEAKEEVTEEQAEATEW 242
Query: 136 ERE 138
E
Sbjct: 243 AEE 245
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.051
Identities = 12/54 (22%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Query: 13 EHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDD 66
E LQ Q + + I+ R L + N LL VL +
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-VLLN 252
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 31.0 bits (71), Expect = 0.076
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 74 EKEEKEGGREGGEEMKGKEENGEEDEVEEGEEEEEKKKEEKAKKKEQEEE 123
+ E E E E K ++E+ +++ E EEEE+K K +K +K + E
Sbjct: 217 KTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWDWE 266
Score = 30.3 bits (69), Expect = 0.15
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 74 EKEEKEGGREGGEEMKGKEENGEEDEVEEGEEEEEKKKEEKAKKKEQEE 122
K E EE +E+ +DE EEEEEKK + K +K +
Sbjct: 216 SKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWD 264
Score = 29.9 bits (68), Expect = 0.21
Identities = 8/38 (21%), Positives = 21/38 (55%)
Query: 86 EEMKGKEENGEEDEVEEGEEEEEKKKEEKAKKKEQEEE 123
+ + EE EE+E + E+E+ + +++E+++
Sbjct: 216 SKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKP 253
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_B
Length = 241
Score = 30.6 bits (69), Expect = 0.11
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 87 EMKGKEENGEEDEVE------EGEEEEEKKKEEKAKKKEQEEEGGGGGGEQEKEEEREG 139
++G+ EE EV + E+K+ E+ + E EE E E E+ +
Sbjct: 180 ILRGELSKDEEWEVMVDLFYHKTLPTAEQKEAEEEEGAEGAEEKVAEVKEGEAEQNTDN 238
Score = 28.3 bits (63), Expect = 0.77
Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 73 DEKEEKEGGREGGEEMKGKEENGEEDEVEEGEEEEEKKKEEKAKKKEQEEEGGGGGGEQE 132
E + G EE + + + E++E ++EE A+ E++ G ++
Sbjct: 176 REVKILRGELSKDEEWEVMVDLFYHKTLPT-AEQKEAEEEEGAEGAEEKVAEVKEGEAEQ 234
Query: 133 KEEERE 138
+ +
Sbjct: 235 NTDNKN 240
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 30.5 bits (69), Expect = 0.14
Identities = 11/46 (23%), Positives = 26/46 (56%)
Query: 93 ENGEEDEVEEGEEEEEKKKEEKAKKKEQEEEGGGGGGEQEKEEERE 138
E EV EEE++ ++++ +KK+++++ E+EE++
Sbjct: 210 TKEVEKEVPIPEEEKKDEEKKDEEKKDEDDKKPKLEEVDEEEEKKP 255
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 30.4 bits (69), Expect = 0.17
Identities = 8/66 (12%), Positives = 25/66 (37%)
Query: 57 PNGLLCVLDDQAKKRRDEKEEKEGGREGGEEMKGKEENGEEDEVEEGEEEEEKKKEEKAK 116
P+GL + + + + + + ++ + + ++ E E+E + +
Sbjct: 486 PSGLHTIEEAYTIEDIEAGSDTKTVKKDDLTIVAHTFGLDAKKLNELIEKENEMLAQDKL 545
Query: 117 KKEQEE 122
E E+
Sbjct: 546 VAETED 551
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 29.9 bits (67), Expect = 0.23
Identities = 12/57 (21%), Positives = 21/57 (36%)
Query: 79 EGGREGGEEMKGKEENGEEDEVEEGEEEEEKKKEEKAKKKEQEEEGGGGGGEQEKEE 135
E G + G + + +E EE KK+ + KKK + G ++
Sbjct: 5 EEVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESG 61
Score = 29.1 bits (65), Expect = 0.51
Identities = 11/68 (16%), Positives = 31/68 (45%)
Query: 67 QAKKRRDEKEEKEGGREGGEEMKGKEENGEEDEVEEGEEEEEKKKEEKAKKKEQEEEGGG 126
+++ +KE G E + E + ED+ + ++E+ + A K+++++
Sbjct: 47 GPSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKK 106
Query: 127 GGGEQEKE 134
G + + +
Sbjct: 107 RGPKVQTD 114
Score = 28.7 bits (64), Expect = 0.65
Identities = 13/61 (21%), Positives = 20/61 (32%)
Query: 79 EGGREGGEEMKGKEENGEEDEVEEGEEEEEKKKEEKAKKKEQEEEGGGGGGEQEKEEERE 138
E G + + E+ EE KKK K KK + G ++E +
Sbjct: 6 EVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVD 65
Query: 139 G 139
Sbjct: 66 E 66
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 305
Score = 29.0 bits (64), Expect = 0.48
Identities = 10/67 (14%), Positives = 19/67 (28%)
Query: 73 DEKEEKEGGREGGEEMKGKEENGEEDEVEEGEEEEEKKKEEKAKKKEQEEEGGGGGGEQE 132
+ G G + + + EE +E+EE++ A E +
Sbjct: 184 RMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEEAALVAPDYGAVAEYAAPAADTW 243
Query: 133 KEEEREG 139
E
Sbjct: 244 GGEWGTD 250
Score = 25.9 bits (56), Expect = 4.9
Identities = 8/58 (13%), Positives = 14/58 (24%)
Query: 82 REGGEEMKGKEENGEEDEVEEGEEEEEKKKEEKAKKKEQEEEGGGGGGEQEKEEEREG 139
+ M + +E +E EEEE + E +
Sbjct: 196 GHKWDVMVDLFFYRDPEEAKEQEEEEAALVAPDYGAVAEYAAPAADTWGGEWGTDAAA 253
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 28.7 bits (64), Expect = 0.59
Identities = 10/51 (19%), Positives = 23/51 (45%)
Query: 89 KGKEENGEEDEVEEGEEEEEKKKEEKAKKKEQEEEGGGGGGEQEKEEEREG 139
+ +EN + E EE + KE+ K++ ++++ + E + G
Sbjct: 378 QAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDETG 428
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal
nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO
MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G*
3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F*
Length = 288
Score = 27.3 bits (61), Expect = 1.4
Identities = 10/80 (12%), Positives = 25/80 (31%), Gaps = 4/80 (5%)
Query: 60 LLCVLDDQAKKRRDEKEEKEGGREGGEEMKGKEENGEEDEVEEGEEEEEKKKEEKAKKKE 119
+ +D +K E E E G + + D ++E + +K+ + E
Sbjct: 200 IYLAHEDNKEK----DFELEISWCSLSETNGLHKFVKGDLLQEAIDFAQKEINGDDDEDE 255
Query: 120 QEEEGGGGGGEQEKEEEREG 139
+ + ++
Sbjct: 256 DDSDNVMSSDDENAPVATNA 275
>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A
{Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6
2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J
3j0e_G
Length = 185
Score = 27.1 bits (61), Expect = 1.8
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 9/49 (18%)
Query: 82 REGGEEMKGKEENGE--EDEVEEGEEEEEK-------KKEEKAKKKEQE 121
RE +++K + EDE + E E +K K ++ A+KKEQE
Sbjct: 134 REALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQLAEKKEQE 182
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 27.0 bits (60), Expect = 1.9
Identities = 14/65 (21%), Positives = 26/65 (40%)
Query: 74 EKEEKEGGREGGEEMKGKEENGEEDEVEEGEEEEEKKKEEKAKKKEQEEEGGGGGGEQEK 133
E+ EK+ + + +E+ EE+ + EEE E+A +E E +E
Sbjct: 2 EQGEKQVMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEEL 61
Query: 134 EEERE 138
+
Sbjct: 62 AAAKA 66
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome,
ribosomal R ribosomal protein, STM1, eukaryotic
ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I
2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 1s1i_N 3izc_V 3izs_V
3jyw_N
Length = 184
Score = 26.8 bits (59), Expect = 2.0
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 100 VEEGEEEEEKKKEEKAKKKEQEEEG 124
V E EE K E+K + + G
Sbjct: 150 VTEKEEAVAKAAEKKVVRLTSRQRG 174
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 27.1 bits (59), Expect = 2.0
Identities = 7/54 (12%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 86 EEMKGKEENGEEDEVEEGEEEEEKKKEEKAKKKEQEEEGGGGGGEQEKEEEREG 139
+ K EN + ++ + E+E + + + + + Q + + +G
Sbjct: 305 KRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQ------MQMQMQGGDG 352
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli}
SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Length = 185
Score = 26.7 bits (60), Expect = 2.2
Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 9/49 (18%)
Query: 82 REGGEEMKGKEENGE--EDEVEEGEEEEEK-------KKEEKAKKKEQE 121
R+ +++K ++ E ED+ +++ +K K E KE E
Sbjct: 133 RDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEAE 181
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium
difficile}
Length = 189
Score = 26.4 bits (58), Expect = 2.7
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 82 REGGEEMKGKEENGEEDEVEEGEEEEEKKKEEKAKKKEQ 120
R GEE G EE+ E EE ++ + + EE AK++ +
Sbjct: 146 RFNGEEQDGFEEDANFMEYEEIDKIKSEALEEFAKRRNR 184
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 26.6 bits (59), Expect = 3.0
Identities = 10/82 (12%), Positives = 24/82 (29%), Gaps = 3/82 (3%)
Query: 55 GKPNGLLCVLDDQAKKRRDEKEEKEGGREGGEEMKGKEENGEEDEVEEGEEEEEKKKEEK 114
KP L + D + + E + + + E +E+ E +
Sbjct: 539 RKPEILFKKVTD---DQIIYFILNYMAKGNPEGARILLDKYYKREDVIRVAKEKFGDEAE 595
Query: 115 AKKKEQEEEGGGGGGEQEKEEE 136
+ ++ ++ KE
Sbjct: 596 VVLRRVYKDIKLKEKKEGKEMY 617
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 184
Score = 26.4 bits (58), Expect = 3.2
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 100 VEEGEEEEEKKKEEKAKKKE 119
+ E E+ K +EE A+KK+
Sbjct: 150 LTEKEQIVPKPEEEVAQKKK 169
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D*
3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Length = 1524
Score = 26.7 bits (59), Expect = 3.2
Identities = 13/61 (21%), Positives = 19/61 (31%)
Query: 63 VLDDQAKKRRDEKEEKEGGREGGEEMKGKEENGEEDEVEEGEEEEEKKKEEKAKKKEQEE 122
VLD + EK E + + E + G + K EE K +E
Sbjct: 134 VLDPKGAILNGVPVEKRQLLTDEEYRELRYGKQETYPLPPGVDALVKDGEEVVKGQELAP 193
Query: 123 E 123
Sbjct: 194 G 194
>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP
domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB:
2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*
Length = 161
Score = 26.0 bits (57), Expect = 3.4
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 12 NEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSD 45
E + + Y K G++ HI D
Sbjct: 36 PEDWEIEESWGDKDYYLSILKKNGLQPLHIPIPD 69
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 26.3 bits (57), Expect = 3.5
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 11/57 (19%)
Query: 67 QAKKRRDEKEEKEGGREGGEEMKGKEENGEEDEVEEGEEEEEKKKEEKAKKKEQEEE 123
QA + E E K +EE + ++E + + ++E +K +++ E
Sbjct: 76 QADRLTQEPESIR---------KWREEQRKR--LQELDAASKVMEQEWREKAKKDLE 121
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 26.3 bits (57), Expect = 3.9
Identities = 19/123 (15%), Positives = 37/123 (30%), Gaps = 8/123 (6%)
Query: 1 MTFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGL 60
+TF+ N A F + + + F N L + V+
Sbjct: 586 VTFDDFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVD------ 639
Query: 61 LCVLDDQAKKRRDEKEEKEGGREGGEEMKGKEENGEEDEVEEGEEEEEKKKEEKAKKKEQ 120
V + +R + + E +E + E + E+E + E + +
Sbjct: 640 --VQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQS 697
Query: 121 EEE 123
E E
Sbjct: 698 EAE 700
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 26.0 bits (57), Expect = 4.7
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 96 EEDEVEEGEEEEEKKKEEKAKKKEQEEEGGGGGGEQEKEEER 137
E + + + +EEEE++ +A+ KEQ E +E EE
Sbjct: 394 ENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSEES 435
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_Q 4a1c_Q 4a1e_Q
Length = 183
Score = 25.7 bits (56), Expect = 4.9
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 100 VEEGEEEEEKKKEEKAKKKEQEEEGG 125
+E + K+ + A KK + + G
Sbjct: 152 AQEVAAKVRKEAPKDAAKKVPKTKKG 177
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein,
acetylation, cytoplasm, phosphorylation, polymorphism;
2.15A {Homo sapiens}
Length = 253
Score = 25.8 bits (56), Expect = 5.3
Identities = 6/37 (16%), Positives = 13/37 (35%)
Query: 87 EMKGKEENGEEDEVEEGEEEEEKKKEEKAKKKEQEEE 123
M+G EV +E + +++ E+
Sbjct: 217 RMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEK 253
>3iz5_V 60S ribosomal protein L17 (L22P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_V
Length = 171
Score = 25.2 bits (55), Expect = 6.3
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 100 VEEGEEEEEKKKEEKAKKKE 119
+ E EE +K+ E + ++
Sbjct: 151 LSEKEEPVKKEPESQIAARK 170
>2okv_A Probable D-tyrosyl-tRNA(Tyr) deacylase 1; DNA replication, DUE,
ATPase, tRNA deacylase, hydrolase; 2.00A {Homo sapiens}
Length = 209
Score = 25.4 bits (56), Expect = 6.6
Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 2/65 (3%)
Query: 74 EKEEKEGGREGGEEMKGKEENGEEDEVEEGEEEEEKKKEEKAKKKEQEEEGGGGGGEQEK 133
E +++ E+ + E + E KE +KE G G+
Sbjct: 146 ESPAPGTATSDPKQLSKLEKQQQRKEKTRAKGPSESSKERNTPRKEDRSASSGAEGDV-- 203
Query: 134 EEERE 138
ERE
Sbjct: 204 SSERE 208
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 25.3 bits (55), Expect = 7.6
Identities = 10/68 (14%), Positives = 22/68 (32%)
Query: 56 KPNGLLCVLDDQAKKRRDEKEEKEGGREGGEEMKGKEENGEEDEVEEGEEEEEKKKEEKA 115
KP+G + ++ +E + K + E V E + E++ +
Sbjct: 133 KPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFN 192
Query: 116 KKKEQEEE 123
+ E
Sbjct: 193 VWGKTGVE 200
>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics,
medical structural genomics of pathogen protozoa,
MSGPP, unknown function; HET: MSE EPE; 2.30A
{Leishmania major}
Length = 167
Score = 24.9 bits (54), Expect = 8.5
Identities = 5/20 (25%), Positives = 6/20 (30%)
Query: 26 YEQEEYNKEGIRWRHIEFSD 45
Y+ GI F D
Sbjct: 59 YDATLVKSRGIDVHSWPFDD 78
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics,
stress response protein, chaperone, structural GE
consortium, SGC; 2.50A {Leishmania major}
Length = 444
Score = 25.3 bits (56), Expect = 8.9
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 98 DEVEEGEEEEEKKKEEKAKKK 118
+ V E EEEK++ E+ K
Sbjct: 273 EGVHFEESEEEKQQREEEKAA 293
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat
shock protein, CO-chaperone, ATP-binding, heat shock;
3.0A {Saccharomyces cerevisiae}
Length = 405
Score = 25.3 bits (56), Expect = 9.1
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 99 EVEEGEEEEEKKKEEKAKKK 118
+ E E +EEK + EK K+
Sbjct: 255 DFELEETDEEKAEREKEIKE 274
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase,
protease, threonine protease; 4.10A {Methanocaldococcus
jannaschii}
Length = 264
Score = 25.0 bits (55), Expect = 9.4
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 96 EEDEVEEGEEEEEKKKEEKAKKKEQEEEGGGGGGEQ 131
+E+++ E+ +KK E+ KK+E+ E E+
Sbjct: 229 PVEEIKKLIEKVKKKLNEENKKEEENREETKEKQEE 264
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.303 0.130 0.363
Gapped
Lambda K H
0.267 0.0364 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,167,279
Number of extensions: 129229
Number of successful extensions: 1072
Number of sequences better than 10.0: 1
Number of HSP's gapped: 805
Number of HSP's successfully gapped: 347
Length of query: 139
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 55
Effective length of database: 4,356,429
Effective search space: 239603595
Effective search space used: 239603595
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 52 (24.8 bits)