RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10931
         (139 letters)



>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
           discoideum, class-I myosin MyoE [TaxId: 44689]}
          Length = 684

 Score = 75.1 bits (184), Expect = 2e-17
 Identities = 31/66 (46%), Positives = 45/66 (68%)

Query: 2   TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 61
           +FEQL IN+ NE LQ  F +   + EQEEY +EGI W++IE+ +N    +L+E KP GL+
Sbjct: 389 SFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLI 448

Query: 62  CVLDDQ 67
            +LD+ 
Sbjct: 449 SLLDEA 454


>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 794

 Score = 70.9 bits (173), Expect = 6e-16
 Identities = 31/66 (46%), Positives = 43/66 (65%)

Query: 2   TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 61
           +FEQLCIN+ NE LQ +FN H+F  EQEEY KEGI W  I+F  +      +  KP G+ 
Sbjct: 425 SFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEKPMGIF 484

Query: 62  CVLDDQ 67
            +L+++
Sbjct: 485 SILEEE 490


>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 710

 Score = 70.1 bits (171), Expect = 1e-15
 Identities = 35/70 (50%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 1   MTFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEG--KP 57
            +FEQLCINY NE LQ  FN  +F  EQEEY +EGI W  I+F  D   C++L+E    P
Sbjct: 396 NSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNP 455

Query: 58  NGLLCVLDDQ 67
            G+L +LD++
Sbjct: 456 PGVLALLDEE 465


>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
           scallop (Aequipecten irradians) [TaxId: 31199]}
          Length = 789

 Score = 69.7 bits (170), Expect = 2e-15
 Identities = 33/66 (50%), Positives = 44/66 (66%)

Query: 2   TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 61
           +FEQLCINY NE LQ +FN H+F  EQEEY KEGI W  I+F  +      +  KP G+L
Sbjct: 423 SFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEKPMGIL 482

Query: 62  CVLDDQ 67
            +L+++
Sbjct: 483 SILEEE 488


>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
           (Gallus gallus), Va isoform [TaxId: 9031]}
          Length = 730

 Score = 69.4 bits (169), Expect = 2e-15
 Identities = 39/75 (52%), Positives = 50/75 (66%), Gaps = 1/75 (1%)

Query: 2   TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 61
           +FEQ CINYANE LQ  FN HVF+ EQEEY KE I W  I+F DN  C+ L+E K  G+L
Sbjct: 386 SFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVL 444

Query: 62  CVLDDQAKKRRDEKE 76
            +LD++ K  +   +
Sbjct: 445 DLLDEECKMPKGSDD 459


>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
           {Dictyostelium discoideum [TaxId: 44689]}
          Length = 712

 Score = 63.9 bits (155), Expect = 2e-13
 Identities = 36/69 (52%), Positives = 49/69 (71%), Gaps = 2/69 (2%)

Query: 1   MTFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPN 58
            +FEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D+   + L++G +P 
Sbjct: 417 NSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPP 476

Query: 59  GLLCVLDDQ 67
           G+L +LD+Q
Sbjct: 477 GILALLDEQ 485


>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
          Length = 476

 Score = 25.2 bits (55), Expect = 3.6
 Identities = 8/39 (20%), Positives = 10/39 (25%)

Query: 8   INYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDN 46
           I Y       +  Q  F+            W H E  D 
Sbjct: 377 ITYEPNSGGVFQEQPDFKEPPLSIEGAADHWNHREDEDY 415


>d2c42a4 c.64.1.1 (A:416-668) Pyruvate-ferredoxin oxidoreductase,
           PFOR, domain III {Desulfovibrio africanus [TaxId: 873]}
          Length = 253

 Score = 24.2 bits (52), Expect = 7.4
 Identities = 9/72 (12%), Positives = 22/72 (30%)

Query: 40  HIEFSDNTLCLQLVEGKPNGLLCVLDDQAKKRRDEKEEKEGGREGGEEMKGKEENGEEDE 99
           H+ F +  +    +  + + + C            +  K+GG           E+ ++  
Sbjct: 52  HLRFGEKPIQSTYLVNRADYVACHNPAYVGIYDILEGIKDGGTFVLNSPWSSLEDMDKHL 111

Query: 100 VEEGEEEEEKKK 111
               +     KK
Sbjct: 112 PSGIKRTIANKK 123


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.303    0.130    0.363 

Gapped
Lambda     K      H
   0.267   0.0535    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 536,574
Number of extensions: 25916
Number of successful extensions: 199
Number of sequences better than 10.0: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 83
Length of query: 139
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 62
Effective length of database: 1,350,386
Effective search space: 83723932
Effective search space used: 83723932
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 48 (22.7 bits)