BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10936
(410 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q28557|CRHBP_SHEEP Corticotropin-releasing factor-binding protein OS=Ovis aries
GN=CRHBP PE=2 SV=1
Length = 324
Score = 112 bits (281), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 91/162 (56%), Gaps = 1/162 (0%)
Query: 58 SVNCMLVTSKEGHFFYKSKSVEPVACGVFLLTDPDKLVEVYFDYLDVPCETGGLVSFVDG 117
++ C+ + S +G F + + + + C F + +P++ + +++D + + C G ++ DG
Sbjct: 59 ALRCVDMLSLQGQFTFTADRRQ-LHCATFFIAEPEEFITIHYDLVSIDCLRGDILQVFDG 117
Query: 118 WELNGQFFPSLEDHEKPLHERFTEFCGTKRIKTVFRSSQNAALIQYRVPTRGKGFSFYVR 177
W L G+ FPS +DH P ER+ +FC + + RSSQN A+I +RV G GF+ V+
Sbjct: 118 WILKGEKFPSSQDHPLPTTERYVDFCDSGLSRRSIRSSQNVAMIFFRVHEPGNGFTITVK 177
Query: 178 YHKNPTPCNILLEGLSDVYTLRNYGKSVNCSLTTLYPAQVKV 219
N PCNI+ + + +TL + NCS + +YP +K+
Sbjct: 178 TEPNLFPCNIISQTPNGRFTLVMPHQHRNCSFSIIYPVAIKI 219
>sp|Q91653|CRHBP_XENLA Corticotropin-releasing factor-binding protein OS=Xenopus laevis
GN=crhbp PE=2 SV=1
Length = 321
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 95/163 (58%), Gaps = 1/163 (0%)
Query: 58 SVNCMLVTSKEGHFFYKSKSVEPVACGVFLLTDPDKLVEVYFDYLDVPCETGGLVSFVDG 117
S+ C+ + S EG F +++ + + C +FL+ +P++ + + ++++++ C G ++ DG
Sbjct: 56 SLRCIDMLSIEGQFTFQADRPQ-LHCALFLIGEPEEFIIIEYNFVNIDCIGGDILKVFDG 114
Query: 118 WELNGQFFPSLEDHEKPLHERFTEFCGTKRIKTVFRSSQNAALIQYRVPTRGKGFSFYVR 177
W + G+ FPS DH ER+T+ C + ++ RSSQN A+I +RV G GF+ +R
Sbjct: 115 WIIKGEKFPSSLDHPLSTMERYTDICEDGDVGSITRSSQNVAMIFFRVQQPGHGFTLTIR 174
Query: 178 YHKNPTPCNILLEGLSDVYTLRNYGKSVNCSLTTLYPAQVKVL 220
N PCN++ + ++ +T+ + NCS + +YP +K+
Sbjct: 175 KIPNLFPCNVISQSMNGRFTMITPHQHRNCSFSIIYPVVIKIF 217
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 13/122 (10%)
Query: 241 PCNILLEGLSDVYTLRNYGKSVNCSLTTLYPAQVKVLSLGVGLSNS-KIKRNQDVEVETG 299
PCN++ + ++ +T+ + NCS + +YP +K+ L +G N ++K+ G
Sbjct: 181 PCNVISQSMNGRFTMITPHQHRNCSFSIIYPVVIKIFDLTLGHFNELQLKK----PPPKG 236
Query: 300 TLHKADKRKFQYRIGLGRGKGRNRYVLLDT-----NTTTYSILCGVTTVRLVSSGEFDNA 354
D + GL K + L D + I C T VR+VSSG F N
Sbjct: 237 CGDAGDFVELLGGAGLDPSK---MFPLADLCHSFHGSAQMKIGCDNTVVRMVSSGNFINR 293
Query: 355 VT 356
VT
Sbjct: 294 VT 295
>sp|Q60571|CRHBP_MOUSE Corticotropin-releasing factor-binding protein OS=Mus musculus
GN=Crhbp PE=2 SV=1
Length = 322
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 91/162 (56%), Gaps = 1/162 (0%)
Query: 58 SVNCMLVTSKEGHFFYKSKSVEPVACGVFLLTDPDKLVEVYFDYLDVPCETGGLVSFVDG 117
++ C+ + S G F + + + + C F + +P++ + +++D + + C+ G + DG
Sbjct: 57 ALRCLDMLSLPGQFTFTADRPQ-LHCAAFFIGEPEEFITIHYDLVSIDCQGGDFLKVFDG 115
Query: 118 WELNGQFFPSLEDHEKPLHERFTEFCGTKRIKTVFRSSQNAALIQYRVPTRGKGFSFYVR 177
W L G+ FPS +DH P +R+T+FC + + RSSQN A++ +RV G GF+ ++
Sbjct: 116 WILKGEKFPSSQDHPLPTMKRYTDFCESGLTRRSIRSSQNVAMVFFRVHEPGNGFTITIK 175
Query: 178 YHKNPTPCNILLEGLSDVYTLRNYGKSVNCSLTTLYPAQVKV 219
N PCN++ + S +TL + NCS + +YP +K+
Sbjct: 176 TDPNLFPCNVISQTPSGRFTLVVPYQHQNCSFSIIYPVAIKI 217
Score = 36.2 bits (82), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 23/138 (16%)
Query: 240 IPCNILLEGLSDVYTLRNYGKSVNCSLTTLYPAQVKVLSLGVG-LSNSKIKRNQDVEVET 298
PCN++ + S +TL + NCS + +YP +K+ L +G L ++K+ T
Sbjct: 181 FPCNVISQTPSGRFTLVVPYQHQNCSFSIIYPVAIKISDLTLGHLHGLQLKKPAAGCGGT 240
Query: 299 GTLHKADKRKFQYRIGLGRGKGRNRYVLLDTNTTTYSIL--------CGVTTVRLVSSGE 350
G + L G G + ++ Y L C VR+VSSG+
Sbjct: 241 GDF-----------VELLGGTGLDPSKMMPLADLCYPFLGPAQMKISCDNAVVRMVSSGK 289
Query: 351 FDNAVTV---ALTPAQVE 365
N VT L P ++E
Sbjct: 290 HINRVTFEYRQLEPFELE 307
>sp|P24387|CRHBP_HUMAN Corticotropin-releasing factor-binding protein OS=Homo sapiens
GN=CRHBP PE=1 SV=2
Length = 322
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 92/162 (56%), Gaps = 1/162 (0%)
Query: 58 SVNCMLVTSKEGHFFYKSKSVEPVACGVFLLTDPDKLVEVYFDYLDVPCETGGLVSFVDG 117
++ C+ + S +G F + + + + C F +++P++ + +++D + + C+ G + DG
Sbjct: 57 ALRCLDMLSLQGQFTFTADRPQ-LHCAAFFISEPEEFITIHYDQVSIDCQGGDFLKVFDG 115
Query: 118 WELNGQFFPSLEDHEKPLHERFTEFCGTKRIKTVFRSSQNAALIQYRVPTRGKGFSFYVR 177
W L G+ FPS +DH P ER+ +FC + + RSSQN A+I +RV G GF+ ++
Sbjct: 116 WILKGEKFPSSQDHPLPSAERYIDFCESGLSRRSIRSSQNVAMIFFRVHEPGNGFTLTIK 175
Query: 178 YHKNPTPCNILLEGLSDVYTLRNYGKSVNCSLTTLYPAQVKV 219
N PCN++ + + +TL + NCS + +YP +K+
Sbjct: 176 TDPNLFPCNVISQTPNGKFTLVVPHQHRNCSFSIIYPVVIKI 217
>sp|P24388|CRHBP_RAT Corticotropin-releasing factor-binding protein OS=Rattus norvegicus
GN=Crhbp PE=2 SV=1
Length = 322
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 89/162 (54%), Gaps = 1/162 (0%)
Query: 58 SVNCMLVTSKEGHFFYKSKSVEPVACGVFLLTDPDKLVEVYFDYLDVPCETGGLVSFVDG 117
++ C+ + S G F + + + + C F + +P++ + ++FD + + C+ G + DG
Sbjct: 57 ALRCLDMLSLPGQFTFTADQPQ-LHCAAFFIGEPEEFITIHFDLVSIDCQGGDFLKVFDG 115
Query: 118 WELNGQFFPSLEDHEKPLHERFTEFCGTKRIKTVFRSSQNAALIQYRVPTRGKGFSFYVR 177
W L G+ FPS +DH P ER+T+FC + + SSQN A++ +RV G GF+ ++
Sbjct: 116 WILKGEKFPSSQDHPLPTRERYTDFCESGLTRRSVTSSQNVAMVFFRVHEPGNGFTITIK 175
Query: 178 YHKNPTPCNILLEGLSDVYTLRNYGKSVNCSLTTLYPAQVKV 219
N PCNI+ + S + L + NCS + +YP +K+
Sbjct: 176 TDPNLFPCNIISQTPSGRFALVVPYQHQNCSFSIIYPVTIKI 217
>sp|P07003|POXB_ECOLI Pyruvate dehydrogenase [ubiquinone] OS=Escherichia coli (strain
K12) GN=poxB PE=1 SV=1
Length = 572
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%)
Query: 326 LLDTNTTTYSILCGVTTVRLVSSGEFDNAVTVALTPAQVEDLDAASLCDKRGMPDYVQLG 385
L DTN + CG+T +R+ + E D A+ A + +D ++ +P ++L
Sbjct: 482 LHDTNFARIAEACGITGIRVEKASEVDEALQRAFSIDGPVLVDVVVAKEELAIPPQIKLE 541
Query: 386 GAEGFDLAQLSVVDS 400
A+GF L L + S
Sbjct: 542 QAKGFSLYMLRAIIS 556
>sp|B3L3W7|RS3A_PLAKH 40S ribosomal protein S3a OS=Plasmodium knowlesi (strain H)
GN=PKH_081740 PE=3 SV=1
Length = 262
Score = 32.7 bits (73), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 188 LLEGLSDVYTLRNYGKSVNC-SLTTLYPAQVKVLSGKGESQ--PFRERTSSPQDNIPCNI 244
L+EG +DV T+ NY + C + T P Q K SQ R++ + +
Sbjct: 120 LIEGYTDVKTIDNYQLRMFCIAFTKKRPNQTKTTCYAQTSQIKKIRKKMVDIMNAEASKV 179
Query: 245 LLEGLSDVYTLRNYGKSVNCSLTTLYPAQ 273
LL+ L + + GK V +YP Q
Sbjct: 180 LLKDLVKKFIPESIGKEVEKQCKKIYPLQ 208
>sp|Q5FRS9|RLMH_GLUOX Ribosomal RNA large subunit methyltransferase H OS=Gluconobacter
oxydans (strain 621H) GN=rlmH PE=3 SV=1
Length = 152
Score = 32.7 bits (73), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 352 DNAVTVAL-----TPAQVEDLDAASLCDKRGMPDYVQLGGAEGFDLAQLSVVDSICGLDS 406
DNA+ VAL TP + + S + G P + +GGAEG D + + DS+ L
Sbjct: 58 DNALIVALDEGGKTPDSLRLAEMLSRWQESGRPIHFLIGGAEGLDSSVIQRADSVISLGK 117
Query: 407 I 407
+
Sbjct: 118 L 118
>sp|A5K7J8|RS3A_PLAVS 40S ribosomal protein S3a OS=Plasmodium vivax (strain Salvador I)
GN=PVX_095080 PE=3 SV=1
Length = 262
Score = 32.3 bits (72), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 188 LLEGLSDVYTLRNYGKSVNC-SLTTLYPAQVKVLSGKGESQ--PFRERTSSPQDNIPCNI 244
L+EG +DV T+ NY + C + T P Q K SQ R++ + +
Sbjct: 120 LIEGYTDVKTIDNYQLRMFCIAFTKKRPNQTKTTCYAQTSQIKKIRKKMVDIMNAEASKV 179
Query: 245 LLEGLSDVYTLRNYGKSVNCSLTTLYPAQ 273
+L+ L + + GK V +YP Q
Sbjct: 180 MLKDLVKKFIPESIGKEVEKQCKKIYPLQ 208
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,229,110
Number of Sequences: 539616
Number of extensions: 6720882
Number of successful extensions: 12969
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 12939
Number of HSP's gapped (non-prelim): 28
length of query: 410
length of database: 191,569,459
effective HSP length: 120
effective length of query: 290
effective length of database: 126,815,539
effective search space: 36776506310
effective search space used: 36776506310
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)