RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy10936
         (410 letters)



>gnl|CDD|147555 pfam05428, CRF-BP, Corticotropin-releasing factor binding protein
           (CRF-BP).  This family consists of several eukaryotic
           corticotropin-releasing factor binding proteins (CRF-BP
           or CRH-BP). Corticotropin-releasing hormone (CRH) plays
           multiple roles in vertebrate species. In mammals, it is
           the major hypothalamic releasing factor for pituitary
           adrenocorticotropin secretion, and is a neurotransmitter
           or neuromodulator at other sites in the central nervous
           system. In non-mammalian vertebrates, CRH not only acts
           as a neurotransmitter and hypophysiotropin, it also acts
           as a potent thyrotropin-releasing factor, allowing CRH
           to regulate both the adrenal and thyroid axes,
           especially in development. CRH-BP is thought to play an
           inhibitory role in which it binds CRH and other CRH-like
           ligands and prevents the activation of CRH receptors.
           There is however evidence that CRH-BP may also exhibit
           diverse extra and intracellular roles in a cell specific
           fashion and at specific times in development.
          Length = 311

 Score =  198 bits (504), Expect = 2e-60
 Identities = 64/161 (39%), Positives = 105/161 (65%), Gaps = 1/161 (0%)

Query: 61  CMLVTSKEGHFFYKSKSVEPVACGVFLLTDPDKLVEVYFDYLDVPCETGGLVSFVDGWEL 120
           C+ + S+ G F +++     + C +F++ +PD+++E+ + ++D+ CE G L+   DGWEL
Sbjct: 60  CLDMLSRPGQFTFQA-DRPQLVCALFVIGEPDEVIEIEYKHVDIDCEGGDLLKVFDGWEL 118

Query: 121 NGQFFPSLEDHEKPLHERFTEFCGTKRIKTVFRSSQNAALIQYRVPTRGKGFSFYVRYHK 180
            G+ FPS +DH  PL ER+T+FC +   K  FRSSQN A++ +R+P  G GF+  VR+H 
Sbjct: 119 KGEKFPSSQDHPLPLMERYTDFCNSGSNKRTFRSSQNVAMLFFRIPGPGSGFTLTVRFHP 178

Query: 181 NPTPCNILLEGLSDVYTLRNYGKSVNCSLTTLYPAQVKVLS 221
           NP PCN+L +     +T+ N G++ NCS + +YP  +K+ S
Sbjct: 179 NPFPCNVLSQDPEGSFTMVNPGQARNCSFSIIYPVVIKIAS 219



 Score = 31.4 bits (71), Expect = 0.86
 Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 15/115 (13%)

Query: 310 QYRIGLGRGKGRNRYVLLDTNTTTYSILCGVTTVR--LVSSGEFDNAVTVALTPAQVE-- 365
            +RI  G G G    V    N    ++L         +V+ G+  N     + P  ++  
Sbjct: 160 FFRIP-GPGSGFTLTVRFHPNPFPCNVLSQDPEGSFTMVNPGQARNCSFSIIYPVVIKIA 218

Query: 366 DLDAASLCDKRGMP----------DYVQLGGAEGFDLAQLSVVDSICGLDSIPSK 410
            L    L D R             D+V+L G  G D +++  V  +CG  S P++
Sbjct: 219 SLSLGGLNDVRLQRKVNKDCQGAGDFVELLGGSGLDPSKMFPVADLCGSFSGPAQ 273


>gnl|CDD|214483 smart00042, CUB, Domain first found in C1r, C1s, uEGF, and bone
           morphogenetic protein.  This domain is found mostly
           among developmentally-regulated proteins. Spermadhesins
           contain only this domain.
          Length = 102

 Score = 30.1 bits (68), Expect = 0.54
 Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 11/88 (12%)

Query: 91  PDKLVEVYFDYLDVPCETGGLVSFVDGWELNGQFFPSLEDHEKPLHERFTEFCGTKRIKT 150
           P   +E+ F   D+         +V            + D           FCG++    
Sbjct: 26  PGYRIELQFTDFDLESSDNCEYDYV-----------EIYDGPSASSPLLGRFCGSEAPPP 74

Query: 151 VFRSSQNAALIQYRVPTRGKGFSFYVRY 178
           V  SS N+  + +   +  +   F  RY
Sbjct: 75  VISSSSNSLTLTFVSDSSVQKRGFSARY 102


>gnl|CDD|234138 TIGR03177, pilus_cpaB, Flp pilus assembly protein CpaB.  Members of
           this protein family are the CpaB protein of Flp-type
           pilus assembly. Similar proteins include the FlgA
           protein of bacterial flagellum biosynthesis.
          Length = 261

 Score = 30.7 bits (70), Expect = 1.1
 Identities = 8/19 (42%), Positives = 10/19 (52%)

Query: 353 NAVTVALTPAQVEDLDAAS 371
             VT+ +TP Q E L  A 
Sbjct: 184 RTVTLEVTPEQAEKLALAR 202


>gnl|CDD|238001 cd00041, CUB, CUB domain; extracellular domain; present in proteins
           mostly known to be involved in development; not found in
           prokaryotes, plants and yeast.
          Length = 113

 Score = 28.9 bits (65), Expect = 2.0
 Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 14/93 (15%)

Query: 87  LLTDPDKLVEVYFDYLDVPCETGGLVSFVDGWELNGQFFPSLEDHEKPLHERFTEFCGTK 146
           +   P   + + F+  D+         +++           + D           FCG+ 
Sbjct: 32  IEAPPGYRIRLTFEDFDLESSPNCSYDYLE-----------IYDGPSTSSPLLGRFCGST 80

Query: 147 RIKTVFRSSQNAALIQYR--VPTRGKGFSFYVR 177
                  SS N+  +++R      G+GF     
Sbjct: 81  LPPP-IISSGNSLTVRFRSDSSVTGRGFKATYS 112


>gnl|CDD|182708 PRK10763, PRK10763, phospholipase A; Provisional.
          Length = 289

 Score = 28.2 bits (63), Expect = 7.8
 Identities = 10/18 (55%), Positives = 10/18 (55%)

Query: 220 LSGKGESQPFRERTSSPQ 237
           LS   ES PFRE    PQ
Sbjct: 120 LSNSEESSPFRETNYEPQ 137


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.319    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0690    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,271,341
Number of extensions: 1924357
Number of successful extensions: 1256
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1256
Number of HSP's successfully gapped: 11
Length of query: 410
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 311
Effective length of database: 6,546,556
Effective search space: 2035978916
Effective search space used: 2035978916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.0 bits)