RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10936
(410 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.7 bits (115), Expect = 3e-06
Identities = 63/464 (13%), Positives = 113/464 (24%), Gaps = 148/464 (31%)
Query: 18 YKSKSIEPVACGVFLLTDPDKLVEVYFDYLDVPCETGGLVSVNCMLVTSKEGHFFYKSKS 77
Y+ K I V F D V+ FD DV ++ + +E SK
Sbjct: 16 YQYKDILSV----FE----DAFVD-NFDCKDVQDMPKSIL-------SKEEIDHIIMSKD 59
Query: 78 VEPVACGVF--LLTDPDKLVEVYF------DY-----------LDVPCETGGLVSFVDGW 118
+F LL+ +++V+ + +Y T + D
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 119 ELNGQFFPSL----EDHEKPLHERFTEF-------------CGTKRIKTVFRSSQNAALI 161
+ Q F L + E G KT +
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG----KTWVALD---VCL 172
Query: 162 QYRVPTR--GKGF------------------SFYVRYHKN-----------PTPCNILLE 190
Y+V + K F + N + +
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 191 GLSDVYTLRNYGKS-----------------VNCS--LTTLYPAQVKVLSGKGESQPFRE 231
L + + Y ++C LTT + LS + +
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 232 RTSSPQDNIPCNILLEGLSDVYTLRNYGKSVNCSLTTLYPAQVK-----VLSL-GVGLSN 285
S L+ K ++C L P +V LS+ + +
Sbjct: 293 HHS------------MTLTPDEVKSLLLKYLDCRPQDL-PREVLTTNPRRLSIIAESIRD 339
Query: 286 SKIKRNQDVEVETGTLHKADKRKFQYRIGLGRGKGRNRYVLL-----DTNTTTYSILCGV 340
+ V L + L + R + L + T +L
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNV---LEPAEYRKMFDRLSVFPPSAHIPT-ILLS-- 393
Query: 341 TTVRLVSSGEFDNAVTVALTPAQVEDLDAASLCDKRGMPDYVQL 384
+ + + V V L SL +K+ + +
Sbjct: 394 ---LIWFDVIKSDVMVV------VNKLHKYSLVEKQPKESTISI 428
Score = 36.8 bits (84), Expect = 0.016
Identities = 42/290 (14%), Positives = 73/290 (25%), Gaps = 115/290 (39%)
Query: 6 C-MLVTSKEGHFF-------YKSKSIEPVACGVFLLTDPDKLVEVYFDYLDVPCETGGL- 56
C +L+T++ S++ + LT PD++ + YLD + L
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMT---LT-PDEVKSLLLKYLDCRPQD--LP 319
Query: 57 ---VSVN----CMLVTSKEGHF----FYK-----------SKSVE---P-------VACG 84
++ N ++ S +K S+ P
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379
Query: 85 VFLLTD---PDKLVEVY---FDYLDVPCETGGLV--SFVDGWELNGQFF-PSL------- 128
VF P L+ + DV L S V+ PS+
Sbjct: 380 VFP-PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 129 EDHEKPLHERFTE-------FCGTKRIKTVFRSSQNAALIQYRVPTRGKGFSFYVRYH-- 179
++E LH + F I QY F ++ +H
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLD--------QY--------FYSHIGHHLK 482
Query: 180 --------------------------KNPTPCNILLEGLSDVYTLRNYGK 203
+ T N L+ + L+ Y
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.006
Identities = 36/270 (13%), Positives = 76/270 (28%), Gaps = 101/270 (37%)
Query: 194 DVYTLRNYGKSVNCSLTTLYPAQVKVLSGKGESQPFRERTSS------PQDNIPCNILLE 247
D + YG S+ + P + + G + + RE S+ + + +
Sbjct: 1650 DNHFKDTYGFSI-LDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFK 1708
Query: 248 GLSDV---YTLRNYGKSVNCSLTTLY--PA-------QVKVL---------------SLG 280
+++ YT R + S T + PA + L SLG
Sbjct: 1709 EINEHSTSYTFR--SEKGLLSATQ-FTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLG 1765
Query: 281 -----VGLSNSKIKRNQDVEVETG--TLHKADKRKFQYRIGLGRGK-----------GRN 322
L++ + +E+ + RG GR+
Sbjct: 1766 EYAALASLADV-------MSIESLVEVVFY-------------RGMTMQVAVPRDELGRS 1805
Query: 323 RYVLLDTNTTTYSILCGVTTVRLV------SSGEFDNAVTVA---LTPAQV------EDL 367
Y ++ N + ++ V +G V + + Q L
Sbjct: 1806 NYGMIAINPGRVAASFSQEALQYVVERVGKRTGWL---VEIVNYNVENQQYVAAGDLRAL 1862
Query: 368 DAASLCDKRGMPDYVQLGGAEGFDLAQLSV 397
D + + +++ + D+ +L
Sbjct: 1863 DTVT-----NVLNFI---KLQKIDIIELQK 1884
Score = 36.6 bits (84), Expect = 0.015
Identities = 63/359 (17%), Positives = 110/359 (30%), Gaps = 112/359 (31%)
Query: 33 LTDPDKLVEVYFDYLD---VPCETGGLVSVNCMLVTSKE-----GHFFYKSKSVEPVACG 84
L +P + DYL + C G++ + +VT+K G K + G
Sbjct: 219 LENPSNTPDK--DYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG 276
Query: 85 V--------------FLLTDPDKLVEVYFDYLDVPC-ETGGLVSF-----VDGWELNGQF 124
+ F ++ K + V F ++ V C E S D E N +
Sbjct: 277 LVTAVAIAETDSWESFFVSV-RKAITVLF-FIGVRCYEAYPNTSLPPSILEDSLE-NNEG 333
Query: 125 FPS------------LEDH------EKPLHER--------FTEF--CGT----KRIKTVF 152
PS ++D+ P ++ G +
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL 393
Query: 153 RSSQNAA-LIQYRVPTRGKGFSFYVR-------YHKNPTPCNILLEGLSDVYTLRNYGKS 204
R ++ + L Q R+P + F R +H + LL SD+ +
Sbjct: 394 RKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH---SH---LLVPASDLINKDLVKNN 447
Query: 205 VNCSLTTLYPAQVKVLS-GKGESQPFRERTSSPQDNIPCNILLEGLSD-VYTLR-NYGKS 261
V+ + + Q+ V G R + S + E + D + L + +
Sbjct: 448 VSFNAKDI---QIPVYDTFDGSD--LRVLSGS---------ISERIVDCIIRLPVKWETT 493
Query: 262 VNCSLTTLYPAQVKVLSLGVGLSNSKI----KRNQD---VEV-ETGTLHKADKRKFQYR 312
T +L G G S + RN+D V V GTL + ++
Sbjct: 494 TQFKAT-------HILDFGPG-GASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFK 544
>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease
M disulfide bond, glycoprotein, secreted, transport,
choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo
sapiens}
Length = 457
Score = 29.5 bits (66), Expect = 2.3
Identities = 25/170 (14%), Positives = 48/170 (28%), Gaps = 19/170 (11%)
Query: 43 YFDYLDVPCETGGLVSVNCMLVTSKEGHFFYKSKSVEPVACGVFLLTDPDKLVEVYFDYL 102
++ + + + TS Y + C + +L+ V+F
Sbjct: 107 NYEAISAATACLQDYTDDLGTFTSPNFPNNYPNNWE----CIYRITVRTGQLIAVHFTNF 162
Query: 103 DVPCETGGLVSFVDGWELNGQFFPSLEDHEKPLHERFTEFCGTKRIKTVFRSSQNAALIQ 162
+ E + D E+ + PL F G+ T+ S N ++
Sbjct: 163 SL--EEAIGNYYTDFLEIR-----DGGYEKSPLLGIF---YGSNLPPTI-ISHSNKLWLK 211
Query: 163 YRVPTRGKGFSFYVRYHKNPTPCNILLEGLSDVYT----LRNYGKSVNCS 208
++ F + + T C L S + Y S C
Sbjct: 212 FKSDQIDTRSGFSAYWDGSSTGCGGNLTTSSGTFISPNYPMPYYHSSECY 261
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 27.6 bits (61), Expect = 4.7
Identities = 13/75 (17%), Positives = 19/75 (25%), Gaps = 9/75 (12%)
Query: 142 FCGTKR---IKTVFRSSQNAALIQ----YRVPTRGKGFS-FYVRYHKNPTPCNILLEGLS 193
K F S ++ I Y GF FY + E +
Sbjct: 78 ESTDTERAPGKDTFYSLGSSLDITFRSDYSNEKPFTGFEAFYAAEDIDECQVA-PGEAPT 136
Query: 194 DVYTLRNYGKSVNCS 208
+ N+ CS
Sbjct: 137 CDHHCHNHLGGFYCS 151
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.410
Gapped
Lambda K H
0.267 0.0561 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,100,978
Number of extensions: 359247
Number of successful extensions: 552
Number of sequences better than 10.0: 1
Number of HSP's gapped: 545
Number of HSP's successfully gapped: 8
Length of query: 410
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 314
Effective length of database: 4,021,377
Effective search space: 1262712378
Effective search space used: 1262712378
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.5 bits)