RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10936
         (410 letters)



>d1w7ca3 d.17.2.1 (A:170-315) Lysyl oxidase PplO, domains 1 and 2
           {Yeast (Pichia pastoris) [TaxId: 4922]}
          Length = 146

 Score = 27.1 bits (60), Expect = 2.7
 Identities = 10/97 (10%), Positives = 25/97 (25%), Gaps = 31/97 (31%)

Query: 44  FDYLDVPCETGGLVSVNCMLVTSKEGHFFY-----KSKSVEPVACGVFLL-----TDPDK 93
             Y D+ C +      +     + +           ++++ P   G F        D  +
Sbjct: 36  VPYEDMGCHSAAPQLHDPATGATVDYGTCNINTENDAENLVPT--GFFFKFDMTGRDVSQ 93

Query: 94  LVEVYFDYLDVPCETGGLVSFVDGWELNGQFFPSLED 130
                                +  +  N + + S E+
Sbjct: 94  WK-------------------MLEYIYNNKVYTSAEE 111


>d1ibxa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40,
           N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 81

 Score = 25.1 bits (55), Expect = 4.9
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 100 DYLDVPCETGGLVSFVDGWELNGQFFPSLEDH 131
               +P     L  + DG EL   +FPS+ D+
Sbjct: 35  LRFQLPERGSRLCLYEDGTELTEDYFPSVPDN 66


>d1c9fa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40,
           N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 87

 Score = 25.1 bits (55), Expect = 5.9
 Identities = 8/32 (25%), Positives = 12/32 (37%)

Query: 100 DYLDVPCETGGLVSFVDGWELNGQFFPSLEDH 131
               +P     L  + DG E+    FP L + 
Sbjct: 38  VRFQLPMPGSRLCLYEDGTEVTDDCFPGLPND 69


>d2f4la1 b.23.3.1 (A:1-283) Putative acetamidase TM0119
          {Thermotoga maritima [TaxId: 2336]}
          Length = 283

 Score = 26.0 bits (57), Expect = 9.2
 Identities = 5/21 (23%), Positives = 9/21 (42%)

Query: 7  MLVTSKEGHFFYKSKSIEPVA 27
          M V   +   +  S ++ PV 
Sbjct: 1  MKVVPAQRCVYSFSANMAPVE 21


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0595    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,488,263
Number of extensions: 68863
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 4
Length of query: 410
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 323
Effective length of database: 1,213,086
Effective search space: 391826778
Effective search space used: 391826778
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.9 bits)