Query psy10937
Match_columns 131
No_of_seqs 119 out of 198
Neff 3.5
Searched_HMMs 46136
Date Fri Aug 16 22:19:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10937.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10937hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2418|consensus 100.0 1.3E-48 2.8E-53 337.5 7.0 127 2-130 278-409 (448)
2 KOG2418|consensus 100.0 1.8E-36 3.9E-41 262.3 5.0 89 42-130 287-379 (448)
3 PF00418 Tubulin-binding: Tau 99.6 2.7E-16 5.9E-21 94.6 2.0 30 65-94 1-31 (31)
4 PF00418 Tubulin-binding: Tau 99.6 9.8E-16 2.1E-20 92.2 2.2 31 95-126 1-31 (31)
5 PF01307 Plant_vir_prot: Plant 13.0 1.2E+02 0.0025 22.4 1.3 12 115-126 36-47 (104)
6 TIGR00307 S8e ribosomal protei 11.5 1.9E+02 0.0042 22.3 2.1 48 27-74 8-61 (127)
7 PF10267 Tmemb_cc2: Predicted 10.3 1.3E+02 0.0028 27.1 0.9 18 15-32 129-146 (395)
8 PF15462 Barttin: Bartter synd 10.1 1.1E+02 0.0023 25.8 0.3 14 8-21 81-94 (224)
9 COG3586 Uncharacterized conser 9.8 1.9E+02 0.0042 21.7 1.5 33 69-102 48-84 (101)
10 PF02395 Peptidase_S6: Immunog 9.6 1.3E+02 0.0028 29.2 0.7 16 8-23 53-68 (769)
No 1
>KOG2418|consensus
Probab=100.00 E-value=1.3e-48 Score=337.50 Aligned_cols=127 Identities=43% Similarity=0.700 Sum_probs=119.3
Q ss_pred CcccccccCCCCccccccccccCcCCcccCCCCc-eeeeeeccccc-ccccccc-CCccccCCCCceeEEEEEeecc--c
Q psy10937 2 NKIQVGAAPSPNLKKVTSKIGSLQNAHYKPGGGK-VKIENRKLEWK-AEPRIAA-KNDEYVPGGGDKKIEVVKLNWN--A 76 (131)
Q Consensus 2 ~~~~~~~~p~Pdl~~V~SKiGS~dNikh~PGGG~-vkI~~~K~d~~-~~sk~gs-~N~~h~PgGG~vkI~s~Kld~~--~ 76 (131)
+.+|.+++|+|||+||+|||||++|||||||||+ |||.++|+||+ ++||||| +||+|+||||+|+|+++||||+ +
T Consensus 278 k~lr~~p~p~pdlkNVKSKIGSt~NiKhqpgGG~IVqIv~kk~dlshvtSKcGSLkNi~H~pGGG~V~Ies~KLDFk~~~ 357 (448)
T KOG2418|consen 278 KVLRMTPKPNPDLKNVKSKIGSTTNIKHQPGGGNIVQIVSKKRDLSHVTSKCGSLKNITHVPGGGNVQIESRKLDFKAAV 357 (448)
T ss_pred chhcccCCCCchhhhhhhhccccccccccCCCCcEEEEEeechhhhhhhhhhcccccccccCCCceeeeeeeecchhhhh
Confidence 4789999999999999999999999999999999 99999999995 8999997 7999999999999999999997 5
Q ss_pred ccccccCCCCcccCCCCCeeEEEeeeccccCcccCCCCCCCCcccCCCCceeec
Q psy10937 77 KPKVGSLDNATHKPGGGDKKIESVKLDFKDKAKPKVGSKDNLKHSPGGGTVKVL 130 (131)
Q Consensus 77 ~SK~GS~dNi~H~PgGG~vkIes~Kldf~~ka~sKvGS~dni~H~PgGG~vki~ 130 (131)
|+|||||||++|+||||||||+++||+|+++ +|+++.+++.|+|-+++|.+.
T Consensus 358 qaKVGSldNahhvPgggnvKI~S~KLtfre~--aKa~~dhgAei~~~sp~vs~~ 409 (448)
T KOG2418|consen 358 QAKVGSLDNAHHVPGGGNVKIVSEKLTFREK--AKAGSDHGAEIKPASPNVSSV 409 (448)
T ss_pred hhhcccccccccccCCCceeeeeeecchhhh--ccccccCCceeeccCCccccc
Confidence 9999999999999999999999999999954 677888899999999988764
No 2
>KOG2418|consensus
Probab=100.00 E-value=1.8e-36 Score=262.26 Aligned_cols=89 Identities=45% Similarity=0.727 Sum_probs=85.7
Q ss_pred cccc-cccccccc-CCccccCCCCc-eeEEEEEeecc-cccccccCCCCcccCCCCCeeEEEeeeccccCcccCCCCCCC
Q psy10937 42 KLEW-KAEPRIAA-KNDEYVPGGGD-KKIEVVKLNWN-AKPKVGSLDNATHKPGGGDKKIESVKLDFKDKAKPKVGSKDN 117 (131)
Q Consensus 42 K~d~-~~~sk~gs-~N~~h~PgGG~-vkI~s~Kld~~-~~SK~GS~dNi~H~PgGG~vkIes~Kldf~~ka~sKvGS~dn 117 (131)
-.|| ++.||||| +||+|+||||+ |||.++|+||+ ++||||||.||+|+||||+|+||+.||||+++||+|||||||
T Consensus 287 ~pdlkNVKSKIGSt~NiKhqpgGG~IVqIv~kk~dlshvtSKcGSLkNi~H~pGGG~V~Ies~KLDFk~~~qaKVGSldN 366 (448)
T KOG2418|consen 287 NPDLKNVKSKIGSTTNIKHQPGGGNIVQIVSKKRDLSHVTSKCGSLKNITHVPGGGNVQIESRKLDFKAAVQAKVGSLDN 366 (448)
T ss_pred CchhhhhhhhccccccccccCCCCcEEEEEeechhhhhhhhhhcccccccccCCCceeeeeeeecchhhhhhhhcccccc
Confidence 3577 89999998 79999999999 99999999998 899999999999999999999999999999999999999999
Q ss_pred CcccCCCCceeec
Q psy10937 118 LKHSPGGGTVKVL 130 (131)
Q Consensus 118 i~H~PgGG~vki~ 130 (131)
++|+||||||||.
T Consensus 367 ahhvPgggnvKI~ 379 (448)
T KOG2418|consen 367 AHHVPGGGNVKIV 379 (448)
T ss_pred cccccCCCceeee
Confidence 9999999999995
No 3
>PF00418 Tubulin-binding: Tau and MAP protein, tubulin-binding repeat; InterPro: IPR001084 Microtubules consist of tubulins as well as a group of additional proteins collectively known as the Microtubule Associated Proteins (MAP). MAP's have been classified into two classes: high molecular weight MAP's and Tau protein. The Tau proteins promote microtubule assembly and stabilise microtubules. The C-terminal region of these proteins contains three or four tandem repeats of a conserved domain of about thirty amino acid residues which is implicated in tubulin-binding and which seems to have a stiffening effect on microtubules.; GO: 0007026 negative regulation of microtubule depolymerization
Probab=99.60 E-value=2.7e-16 Score=94.65 Aligned_cols=30 Identities=57% Similarity=0.943 Sum_probs=16.2
Q ss_pred eeEEEEEeecc-cccccccCCCCcccCCCCC
Q psy10937 65 KKIEVVKLNWN-AKPKVGSLDNATHKPGGGD 94 (131)
Q Consensus 65 vkI~s~Kld~~-~~SK~GS~dNi~H~PgGG~ 94 (131)
|||+++||||+ ++|||||+||++|+||||+
T Consensus 1 VkI~~~K~d~~~v~SK~GS~~N~~H~PGGGn 31 (31)
T PF00418_consen 1 VKIESKKLDFSNVQSKCGSLDNIKHKPGGGN 31 (31)
T ss_pred CceeeeccccccccccccccccccccCCCCC
Confidence 45555555553 4555555555555555553
No 4
>PF00418 Tubulin-binding: Tau and MAP protein, tubulin-binding repeat; InterPro: IPR001084 Microtubules consist of tubulins as well as a group of additional proteins collectively known as the Microtubule Associated Proteins (MAP). MAP's have been classified into two classes: high molecular weight MAP's and Tau protein. The Tau proteins promote microtubule assembly and stabilise microtubules. The C-terminal region of these proteins contains three or four tandem repeats of a conserved domain of about thirty amino acid residues which is implicated in tubulin-binding and which seems to have a stiffening effect on microtubules.; GO: 0007026 negative regulation of microtubule depolymerization
Probab=99.57 E-value=9.8e-16 Score=92.22 Aligned_cols=31 Identities=61% Similarity=0.965 Sum_probs=29.8
Q ss_pred eeEEEeeeccccCcccCCCCCCCCcccCCCCc
Q psy10937 95 KKIESVKLDFKDKAKPKVGSKDNLKHSPGGGT 126 (131)
Q Consensus 95 vkIes~Kldf~~ka~sKvGS~dni~H~PgGG~ 126 (131)
|||+++||||+ +|+|||||+||++|+|||||
T Consensus 1 VkI~~~K~d~~-~v~SK~GS~~N~~H~PGGGn 31 (31)
T PF00418_consen 1 VKIESKKLDFS-NVQSKCGSLDNIKHKPGGGN 31 (31)
T ss_pred Cceeeeccccc-cccccccccccccccCCCCC
Confidence 79999999999 69999999999999999997
No 5
>PF01307 Plant_vir_prot: Plant viral movement protein; InterPro: IPR001896 This family of membrane/coat proteins are found in a number of different ssRNA plant virus families that include Potexvirus, Hordeivirus and Carlavirus.
Probab=12.99 E-value=1.2e+02 Score=22.35 Aligned_cols=12 Identities=42% Similarity=0.769 Sum_probs=7.2
Q ss_pred CCCCcccCCCCc
Q psy10937 115 KDNLKHSPGGGT 126 (131)
Q Consensus 115 ~dni~H~PgGG~ 126 (131)
.||++|.|=||.
T Consensus 36 GDniH~LPhGG~ 47 (104)
T PF01307_consen 36 GDNIHSLPHGGR 47 (104)
T ss_pred CCCCCCCCCCCc
Confidence 466666666653
No 6
>TIGR00307 S8e ribosomal protein S8.e. Archaeal and eukaryotic ribosomal protein S8. This model could easily have been split into two models, one for eukaryotic S8 and one for archaeal S8; eukaryotic forms invariably have in insert of about 80 residues that archaeal forms of S8 do not.
Probab=11.53 E-value=1.9e+02 Score=22.26 Aligned_cols=48 Identities=27% Similarity=0.481 Sum_probs=29.6
Q ss_pred CcccCCCCceeeeeecccc-----ccccccccCCcc-ccCCCCceeEEEEEeec
Q psy10937 27 AHYKPGGGKVKIENRKLEW-----KAEPRIAAKNDE-YVPGGGDKKIEVVKLNW 74 (131)
Q Consensus 27 ikh~PGGG~vkI~~~K~d~-----~~~sk~gs~N~~-h~PgGG~vkI~s~Kld~ 74 (131)
-+.+|.||......+|=-| -+.|++|.+-++ -.--||+.++.-..+|+
T Consensus 8 ~~rk~TGGr~~~~rkKRk~ElGr~pa~T~ig~~r~~~vR~rGGn~K~Ralr~~~ 61 (127)
T TIGR00307 8 SRRKPTGGKYRQARKKRKYELGREPAETKIGERRIKKVRTRGGNKKVRLLRDET 61 (127)
T ss_pred CcccCCCCccccccccchhhcCCCccccccCccEEEEEEcCCCceEEEEEEeee
Confidence 3567788877765444333 355667665333 34557777777777776
No 7
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=10.32 E-value=1.3e+02 Score=27.06 Aligned_cols=18 Identities=22% Similarity=0.254 Sum_probs=15.0
Q ss_pred cccccccccCcCCcccCC
Q psy10937 15 KKVTSKIGSLQNAHYKPG 32 (131)
Q Consensus 15 ~~V~SKiGS~dNikh~PG 32 (131)
.-+++|.||.|||-|...
T Consensus 129 ~likNkFGSADNI~sl~~ 146 (395)
T PF10267_consen 129 HLIKNKFGSADNISSLKD 146 (395)
T ss_pred hcccCCCCCCCccccccc
Confidence 347899999999988754
No 8
>PF15462 Barttin: Bartter syndrome, infantile, with sensorineural deafness (Barttin)
Probab=10.13 E-value=1.1e+02 Score=25.79 Aligned_cols=14 Identities=14% Similarity=0.437 Sum_probs=11.8
Q ss_pred ccCCCCcccccccc
Q psy10937 8 AAPSPNLKKVTSKI 21 (131)
Q Consensus 8 ~~p~Pdl~~V~SKi 21 (131)
-+++|||++||-|+
T Consensus 81 dQSLPdfshIQmKv 94 (224)
T PF15462_consen 81 DQSLPDFSHIQMKV 94 (224)
T ss_pred hcCCCchhhheeee
Confidence 47899999999765
No 9
>COG3586 Uncharacterized conserved protein [Function unknown]
Probab=9.77 E-value=1.9e+02 Score=21.72 Aligned_cols=33 Identities=27% Similarity=0.374 Sum_probs=22.6
Q ss_pred EEEeeccc----ccccccCCCCcccCCCCCeeEEEeee
Q psy10937 69 VVKLNWNA----KPKVGSLDNATHKPGGGDKKIESVKL 102 (131)
Q Consensus 69 s~Kld~~~----~SK~GS~dNi~H~PgGG~vkIes~Kl 102 (131)
+-++.|+. .-+|--..|+.| ||-|++.|+-.-+
T Consensus 48 ~l~m~~~el~d~kg~~kDVsNiG~-~g~GD~Ei~i~~~ 84 (101)
T COG3586 48 SLNMPFNELQDPKGLAKDVSNIGH-WGNGDVEIGIEDL 84 (101)
T ss_pred EEecccCcccCccchhhcccccCC-CcCCcEEEEEeeh
Confidence 44455542 455667889999 9999999975433
No 10
>PF02395 Peptidase_S6: Immunoglobulin A1 protease Serine protease Prosite pattern; InterPro: IPR000710 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S6 (clan PA(S)). The type sample being the IgA1-specific serine endopeptidase from Neisseria gonorrhoeae []. These cleave prolyl bonds in the hinge regions of immunoglobulin A heavy chains. Similar specificity is shown by the unrelated family of M26 metalloendopeptidases.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3SZE_A 3H09_B 3SYJ_A 1WXR_A 3AK5_B.
Probab=9.59 E-value=1.3e+02 Score=29.19 Aligned_cols=16 Identities=31% Similarity=0.609 Sum_probs=8.3
Q ss_pred ccCCCCcccccccccc
Q psy10937 8 AAPSPNLKKVTSKIGS 23 (131)
Q Consensus 8 ~~p~Pdl~~V~SKiGS 23 (131)
.+|||||+.|...-|.
T Consensus 53 ~~PMpDFS~vs~~~G~ 68 (769)
T PF02395_consen 53 KAPMPDFSSVSRNKGV 68 (769)
T ss_dssp SSB---GCCB-TTTSS
T ss_pred CCCCCCcchhccCCce
Confidence 3889999888776443
Done!