Query psy10937
Match_columns 131
No_of_seqs 119 out of 198
Neff 3.5
Searched_HMMs 29240
Date Fri Aug 16 22:19:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10937.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10937hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z0s_A Probable inorganic poly 16.9 29 0.00098 27.9 0.0 16 21-36 14-29 (278)
2 4i3s_G Outer domain of HIV-1 G 8.6 83 0.0028 24.6 0.3 12 55-66 174-185 (190)
3 2rky_B Fibronectin-binding pro 6.3 2E+02 0.007 16.0 1.1 12 95-106 6-17 (26)
4 3syj_A Adhesion and penetratio 6.2 1.6E+02 0.0056 28.4 1.0 12 8-19 45-56 (1011)
5 3agc_A RED chlorophyll catabol 6.0 2.1E+02 0.0072 23.5 1.5 34 63-101 59-96 (276)
6 3j20_J 30S ribosomal protein S 5.4 5.3E+02 0.018 18.7 3.2 48 27-74 8-62 (127)
7 3u5c_I RP19, S14, YS9, 40S rib 5.0 3.4E+02 0.012 21.4 2.1 48 27-74 9-62 (200)
8 2xok_G ATP synthase subunit ga 5.0 43 0.0015 27.4 -3.2 19 11-29 33-51 (311)
9 3h09_A IGA1 protease, immunogl 4.8 2.3E+02 0.008 27.3 1.2 16 9-24 47-64 (989)
10 1wxr_A Haemoglobin protease; h 4.6 2.4E+02 0.0082 27.3 1.1 11 8-18 44-54 (1048)
No 1
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=16.90 E-value=29 Score=27.95 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=0.0
Q ss_pred cccCcCCcccCCCCce
Q psy10937 21 IGSLQNAHYKPGGGKV 36 (131)
Q Consensus 21 iGS~dNikh~PGGG~v 36 (131)
|-+++|+++|||||.+
T Consensus 14 ~~~~~~~~~~~~~~~~ 29 (278)
T 1z0s_A 14 IPTTENLYFQGGGGGG 29 (278)
T ss_dssp ----------------
T ss_pred CCccceEEEcCCCccc
Confidence 4578999999999876
No 2
>4i3s_G Outer domain of HIV-1 GP120 (KER2018 OD4.2.2); antibody affinity, antibody specificity, binding sites, HIV infections, antibodies, HIV envelope protein GP120; 2.85A {Human immunodeficiency virus} PDB: 4i3r_G
Probab=8.62 E-value=83 Score=24.59 Aligned_cols=12 Identities=42% Similarity=1.035 Sum_probs=9.9
Q ss_pred CccccCCCCcee
Q psy10937 55 NDEYVPGGGDKK 66 (131)
Q Consensus 55 N~~h~PgGG~vk 66 (131)
|..++|||||.+
T Consensus 174 ~etfrP~ggdmr 185 (190)
T 4i3s_G 174 CETFRPGGGDMR 185 (190)
T ss_dssp SEEEEECCCSCC
T ss_pred eEEECCCCCccc
Confidence 578999999864
No 3
>2rky_B Fibronectin-binding protein; 4F15F1, beta zipper, staphylococcus aureus, acute phase, alternative splicing, cell adhesion, extracellular matrix; 1.80A {Homo sapiens}
Probab=6.28 E-value=2e+02 Score=15.99 Aligned_cols=12 Identities=25% Similarity=0.573 Sum_probs=10.2
Q ss_pred eeEEEeeecccc
Q psy10937 95 KKIESVKLDFKD 106 (131)
Q Consensus 95 vkIes~Kldf~~ 106 (131)
+.|++..+.|+|
T Consensus 6 ~iv~sN~fef~E 17 (26)
T 2rky_B 6 PIIQNNKFEYKE 17 (26)
T ss_dssp CEEEEEECEEEE
T ss_pred ceEecCCeeEee
Confidence 578999999987
No 4
>3syj_A Adhesion and penetration protein autotransporter; bacterial aggregation and biofilm formation, SELF-associatin autotransporter (SAAT); 2.20A {Haemophilus influenzae}
Probab=6.16 E-value=1.6e+02 Score=28.37 Aligned_cols=12 Identities=25% Similarity=0.360 Sum_probs=9.4
Q ss_pred ccCCCCcccccc
Q psy10937 8 AAPSPNLKKVTS 19 (131)
Q Consensus 8 ~~p~Pdl~~V~S 19 (131)
.+|||||+.|..
T Consensus 45 ~~PM~DFS~vs~ 56 (1011)
T 3syj_A 45 KAPMIDFSVVSR 56 (1011)
T ss_dssp SSCCCCGGGBCT
T ss_pred CCcccccccccC
Confidence 588888888765
No 5
>3agc_A RED chlorophyll catabolite reductase, chloroplast; chlorophyll degradation, substrate-bound enzyme, chlorophyll catabolism, NADP; HET: RCC; 2.00A {Arabidopsis thaliana} PDB: 3agb_A* 3aga_A* 2zxl_A 2zxk_A
Probab=5.98 E-value=2.1e+02 Score=23.48 Aligned_cols=34 Identities=15% Similarity=0.173 Sum_probs=19.7
Q ss_pred CceeEEEEE----eecccccccccCCCCcccCCCCCeeEEEee
Q psy10937 63 GDKKIEVVK----LNWNAKPKVGSLDNATHKPGGGDKKIESVK 101 (131)
Q Consensus 63 G~vkI~s~K----ld~~~~SK~GS~dNi~H~PgGG~vkIes~K 101 (131)
|.+.|.+.+ +||-.+|=+.+. .|.||..+|.+--
T Consensus 59 gsl~~~sg~~~s~id~~i~SWl~~~-----l~~G~al~I~nlv 96 (276)
T 3agc_A 59 ASLHIRSGDKSSPIDFVIGSWIHCK-----IPTGVSLNITSIS 96 (276)
T ss_dssp EEEEEEEBCTTCSEEEEEEEEEEEE-----CTTSCEEEEEEEE
T ss_pred ceeeeccCCCCCCcceeehhhhcCc-----ccCccceeheeee
Confidence 345566655 666555555544 5677777775543
No 6
>3j20_J 30S ribosomal protein S8E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=5.40 E-value=5.3e+02 Score=18.71 Aligned_cols=48 Identities=21% Similarity=0.474 Sum_probs=29.5
Q ss_pred CcccCCCCceeeeeecccc-----cccccccc-CCccc-cCCCCceeEEEEEeec
Q psy10937 27 AHYKPGGGKVKIENRKLEW-----KAEPRIAA-KNDEY-VPGGGDKKIEVVKLNW 74 (131)
Q Consensus 27 ikh~PGGG~vkI~~~K~d~-----~~~sk~gs-~N~~h-~PgGG~vkI~s~Kld~ 74 (131)
-++.|-||......+|=-| -+.|++|. .-++- .--|||.++.-..+|+
T Consensus 8 ~krk~TGGk~~~~rkKRK~ElGr~pa~T~ig~~~r~~~vR~rGGN~K~ralr~~~ 62 (127)
T 3j20_J 8 SLKKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNRKVRLTAAAY 62 (127)
T ss_dssp SSBCTTSCBCCCCSCCCGGGCBCCCCCCEECSSCEEEEEECTTSCEEEEEEEESB
T ss_pred CcccCCCCcccccccchhhhcCCCccccEeCCceEEEEEEccCCceEEEEEEecc
Confidence 4567788877766554444 25566776 33322 3447777777777776
No 7
>3u5c_I RP19, S14, YS9, 40S ribosomal protein S8-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_I
Probab=5.02 E-value=3.4e+02 Score=21.37 Aligned_cols=48 Identities=25% Similarity=0.332 Sum_probs=28.9
Q ss_pred CcccCCCCceeeeeecccc-----ccccccccCCcccc-CCCCceeEEEEEeec
Q psy10937 27 AHYKPGGGKVKIENRKLEW-----KAEPRIAAKNDEYV-PGGGDKKIEVVKLNW 74 (131)
Q Consensus 27 ikh~PGGG~vkI~~~K~d~-----~~~sk~gs~N~~h~-PgGG~vkI~s~Kld~ 74 (131)
-++.|-||......+|--| -+.|++|..-++-+ --|||.++.-..+|+
T Consensus 9 ~kRk~TGGkr~~~rKKRK~ElGR~pa~TkiG~~ri~~vR~RGGN~K~Ralr~d~ 62 (200)
T 3u5c_I 9 HKRSATGAKRAQFRKKRKFELGRQPANTKIGAKRIHSVRTRGGNKKYRALRIET 62 (200)
T ss_dssp SSCBTTTBCCCCCSCCCGGGEECCCCCBCBSSCCEEEEECSSSCEEEEESSBCE
T ss_pred cCcCCCCCccccchhhhHHhcCCCCcccccCCcEEEEEeccCCceeeeeEeece
Confidence 3567777777766554444 25567776544332 347777776666665
No 8
>2xok_G ATP synthase subunit gamma, mitochondrial; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae}
Probab=5.02 E-value=43 Score=27.39 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=15.7
Q ss_pred CCCccccccccccCcCCcc
Q psy10937 11 SPNLKKVTSKIGSLQNAHY 29 (131)
Q Consensus 11 ~Pdl~~V~SKiGS~dNikh 29 (131)
|+.|+.|+.||.|..|++-
T Consensus 33 MaslkeIk~RI~Svk~t~K 51 (311)
T 2xok_G 33 YATLKEVEMRLKSIKNIEK 51 (311)
T ss_dssp -CCHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHH
Confidence 7789999999999998763
No 9
>3h09_A IGA1 protease, immunoglobulin A1 protease; serine protease, beta helix, hydrolase, M protease, secreted, transmembrane, virulence; 1.75A {Haemophilus influenzae}
Probab=4.83 E-value=2.3e+02 Score=27.27 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=11.8
Q ss_pred cCCCCcccccc--ccccC
Q psy10937 9 APSPNLKKVTS--KIGSL 24 (131)
Q Consensus 9 ~p~Pdl~~V~S--KiGS~ 24 (131)
+|||||+.|.. .+.++
T Consensus 47 ~PM~DFS~v~~~~gvaTL 64 (989)
T 3h09_A 47 IPMIDFSVVDVDKRIATL 64 (989)
T ss_dssp CBCCCGGGBCTTTCCCEE
T ss_pred CccccccccccCCceEEE
Confidence 89999999854 35544
No 10
>1wxr_A Haemoglobin protease; hemoglobine protease, autotransporter, beta helix, heme uptake, spate, hydrolase; 2.20A {Escherichia coli} PDB: 3ak5_A
Probab=4.64 E-value=2.4e+02 Score=27.27 Aligned_cols=11 Identities=27% Similarity=0.480 Sum_probs=9.0
Q ss_pred ccCCCCccccc
Q psy10937 8 AAPSPNLKKVT 18 (131)
Q Consensus 8 ~~p~Pdl~~V~ 18 (131)
.+|||||+.|.
T Consensus 44 ~~Pm~DFS~v~ 54 (1048)
T 1wxr_A 44 KAAMPDFSAVD 54 (1048)
T ss_dssp SSCCCCCTTBC
T ss_pred CCCCCCccccc
Confidence 38999998776
Done!