Query psy10937
Match_columns 131
No_of_seqs 119 out of 198
Neff 3.5
Searched_HMMs 13730
Date Fri Aug 16 22:19:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10937.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10937hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1h54a2 b.30.5.3 (A:1-268) Lac 11.5 81 0.0059 21.9 3.1 60 9-73 82-141 (268)
2 d2tpta2 c.27.1.1 (A:71-335) Th 11.4 20 0.0015 26.0 -0.4 16 15-30 45-60 (265)
3 d1brwa2 c.27.1.1 (A:71-330) Py 9.6 26 0.0019 25.4 -0.3 16 16-31 43-58 (260)
4 d1uoua2 c.27.1.1 (A:101-373) T 8.7 26 0.0019 25.6 -0.7 17 15-31 46-62 (273)
5 d2a4va1 c.47.1.10 (A:59-214) P 5.0 1.1E+02 0.0083 19.4 1.1 17 1-19 2-18 (156)
6 d2nxya1 d.172.1.1 (A:83-491) g 4.7 59 0.0043 25.1 -0.7 13 54-66 289-301 (316)
7 d1vk5a_ a.220.1.1 (A:) Hypothe 3.8 1.4E+02 0.01 20.1 0.9 9 18-26 60-68 (121)
8 d1o17a2 c.27.1.1 (A:71-343) An 3.6 90 0.0066 22.8 -0.4 9 17-25 42-50 (273)
9 d2cqha1 d.58.7.1 (A:2-81) IGF- 3.5 1.4E+02 0.01 16.8 0.6 26 1-26 1-30 (80)
10 d1nuia2 g.41.3.2 (A:10-63) Zin 3.5 1.4E+02 0.01 17.3 0.5 11 78-88 9-19 (54)
No 1
>d1h54a2 b.30.5.3 (A:1-268) Lactobacillus maltose phosphorylase, N-terminal domain {Lactobacillus brevis [TaxId: 1580]}
Probab=11.52 E-value=81 Score=21.89 Aligned_cols=60 Identities=10% Similarity=0.060 Sum_probs=37.8
Q ss_pred cCCCCccccccccccCcCCcccCCCCceeeeeeccccccccccccCCccccCCCCceeEEEEEee
Q psy10937 9 APSPNLKKVTSKIGSLQNAHYKPGGGKVKIENRKLEWKAEPRIAAKNDEYVPGGGDKKIEVVKLN 73 (131)
Q Consensus 9 ~p~Pdl~~V~SKiGS~dNikh~PGGG~vkI~~~K~d~~~~sk~gs~N~~h~PgGG~vkI~s~Kld 73 (131)
+.+||...++=.+ |.-...+..++|.=..+.||++.. +=...+.++++||.++|+++++-
T Consensus 82 vn~p~~~~l~l~i---dge~~~~~~~~i~~y~r~LDmr~G--~l~r~~~w~~~~~~i~i~~~Rfv 141 (268)
T d1h54a2 82 VNAVNFIKLPIEI---NGEPVDLAKDKISDFTLDLDMHQG--VLNRSFVVERGAVRVALNFQRFL 141 (268)
T ss_dssp CCCCBCCCCCEEE---TTEECCTTTSEEEEEEEEEETTTT--EEEEEEEEEETTEEEEEEEEEEE
T ss_pred eccCceEEEEEEE---CCEEeecCCCccceeEEEEEcccc--EEEEEEEEEeCCeEEEEEEEEEE
Confidence 4568888777766 344455666766656677887421 11234667677788888777653
No 2
>d2tpta2 c.27.1.1 (A:71-335) Thymidine phosphorylase {Escherichia coli [TaxId: 562]}
Probab=11.36 E-value=20 Score=26.03 Aligned_cols=16 Identities=13% Similarity=0.142 Sum_probs=12.0
Q ss_pred cccccccccCcCCccc
Q psy10937 15 KKVTSKIGSLQNAHYK 30 (131)
Q Consensus 15 ~~V~SKiGS~dNikh~ 30 (131)
+.|+|+|||.|=+..-
T Consensus 45 RsvSS~sGSADvLEaL 60 (265)
T d2tpta2 45 RGLGHTGGTLDKLESI 60 (265)
T ss_dssp CCCTTSCCHHHHHTTS
T ss_pred CCCCCCCchHHHHHhc
Confidence 3588999998876553
No 3
>d1brwa2 c.27.1.1 (A:71-330) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=9.64 E-value=26 Score=25.39 Aligned_cols=16 Identities=13% Similarity=0.227 Sum_probs=12.3
Q ss_pred ccccccccCcCCcccC
Q psy10937 16 KVTSKIGSLQNAHYKP 31 (131)
Q Consensus 16 ~V~SKiGS~dNikh~P 31 (131)
.|+|||||.|=+..-|
T Consensus 43 svSSksGSADvLEaL~ 58 (260)
T d1brwa2 43 GLGHTGGTIDKLESVP 58 (260)
T ss_dssp CBTTBCCHHHHHTTST
T ss_pred ccCCCCchHHHHHhcc
Confidence 4889999988776643
No 4
>d1uoua2 c.27.1.1 (A:101-373) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.65 E-value=26 Score=25.59 Aligned_cols=17 Identities=18% Similarity=0.282 Sum_probs=13.5
Q ss_pred cccccccccCcCCcccC
Q psy10937 15 KKVTSKIGSLQNAHYKP 31 (131)
Q Consensus 15 ~~V~SKiGS~dNikh~P 31 (131)
+.|+|+|||.|=+.+-+
T Consensus 46 RsiSS~sGSADvLEaL~ 62 (273)
T d1uoua2 46 RGLGHTGGTLDKLESIP 62 (273)
T ss_dssp CCBTTBCCHHHHHTTST
T ss_pred CccCCCCchHHHHHhcc
Confidence 35899999999887754
No 5
>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.97 E-value=1.1e+02 Score=19.44 Aligned_cols=17 Identities=29% Similarity=0.815 Sum_probs=12.1
Q ss_pred CCcccccccCCCCcccccc
Q psy10937 1 MNKIQVGAAPSPNLKKVTS 19 (131)
Q Consensus 1 ~~~~~~~~~p~Pdl~~V~S 19 (131)
||.++|+ .++|||. +++
T Consensus 2 ~~~L~vG-~~aP~f~-L~~ 18 (156)
T d2a4va1 2 VNELEIG-DPIPDLS-LLN 18 (156)
T ss_dssp TTCCCTT-CBCCSCE-EEC
T ss_pred CccCCCC-CCCCCeE-EEC
Confidence 6788876 5789985 443
No 6
>d2nxya1 d.172.1.1 (A:83-491) gp120 core {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=4.71 E-value=59 Score=25.10 Aligned_cols=13 Identities=38% Similarity=0.989 Sum_probs=10.2
Q ss_pred CCccccCCCCcee
Q psy10937 54 KNDEYVPGGGDKK 66 (131)
Q Consensus 54 ~N~~h~PgGG~vk 66 (131)
.|..++|+|||++
T Consensus 289 ~~etfrP~ggdmr 301 (316)
T d2nxya1 289 ESEIFRPGGGDMR 301 (316)
T ss_dssp SEEEEEECCCCHH
T ss_pred CeeEecCCCcchh
Confidence 3567899999974
No 7
>d1vk5a_ a.220.1.1 (A:) Hypothetical protein At3g22680 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=3.80 E-value=1.4e+02 Score=20.14 Aligned_cols=9 Identities=22% Similarity=0.412 Sum_probs=7.6
Q ss_pred ccccccCcC
Q psy10937 18 TSKIGSLQN 26 (131)
Q Consensus 18 ~SKiGS~dN 26 (131)
++++||.|+
T Consensus 60 q~Rigs~dE 68 (121)
T d1vk5a_ 60 QSRFGTDSE 68 (121)
T ss_dssp HTTTTCSSC
T ss_pred HhccCCccc
Confidence 689999887
No 8
>d1o17a2 c.27.1.1 (A:71-343) Anthranilate phosphoribosyltransferase (TrpD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=3.62 E-value=90 Score=22.77 Aligned_cols=9 Identities=44% Similarity=0.564 Sum_probs=5.5
Q ss_pred cccccccCc
Q psy10937 17 VTSKIGSLQ 25 (131)
Q Consensus 17 V~SKiGS~d 25 (131)
+.|||||.|
T Consensus 42 ~ssk~GSaD 50 (273)
T d1o17a2 42 VSGKSGSAD 50 (273)
T ss_dssp SSSSCSHHH
T ss_pred CCCCcCHHH
Confidence 566666654
No 9
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.54 E-value=1.4e+02 Score=16.84 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=17.6
Q ss_pred CCcccccccCC----CCccccccccccCcC
Q psy10937 1 MNKIQVGAAPS----PNLKKVTSKIGSLQN 26 (131)
Q Consensus 1 ~~~~~~~~~p~----Pdl~~V~SKiGS~dN 26 (131)
||+|-|++.|. -||..+=+++|....
T Consensus 1 mn~l~V~nLp~~~te~~L~~~F~~~G~i~~ 30 (80)
T d2cqha1 1 MNKLYIGNLSPAVTADDLRQLFGDRKLPLA 30 (80)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHTTCCCS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCcEEE
Confidence 89999988774 245556577775543
No 10
>d1nuia2 g.41.3.2 (A:10-63) Zinc-binding domain of primase-helicase {Bacteriophage T7 [TaxId: 10760]}
Probab=3.51 E-value=1.4e+02 Score=17.27 Aligned_cols=11 Identities=27% Similarity=0.341 Sum_probs=7.9
Q ss_pred cccccCCCCcc
Q psy10937 78 PKVGSLDNATH 88 (131)
Q Consensus 78 SK~GS~dNi~H 88 (131)
..|||.|+..-
T Consensus 9 p~CgSSDa~a~ 19 (54)
T d1nuia2 9 DNCGSSDGNSL 19 (54)
T ss_dssp SSSCCSSCEEE
T ss_pred CCCCCCCCCeE
Confidence 57888887643
Done!