RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy10937
         (131 letters)



>gnl|CDD|144129 pfam00418, Tubulin-binding, Tau and MAP protein, tubulin-binding
           repeat.  This family includes the vertebrate proteins
           MAP2, MAP4 and Tau, as well as other animal homologs.
           MAP4 is present in many tissues but is usually absent
           from neurons; MAP2 and Tau are mainly neuronal. Members
           of this family have the ability to bind to and stabilise
           microtubules. As a result, they are involved in neuronal
           migration, supporting dendrite elongation, and
           regulating microtubules during mitotic metaphase. Note
           that Tau is involved in neurofibrillary tangle formation
           in Alzheimer's disease and some other dementias. This
           family features a C-terminal microtubule binding repeat
           that contains a conserved KXGS motif.
          Length = 31

 Score = 35.8 bits (83), Expect = 2e-04
 Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 96  KIESVKLDFKDKAKPKVGSKDNLKHSPGGG 125
           +I + KLD K   + K GS DN+KH PGGG
Sbjct: 2   QIVNKKLDLK-NVQSKCGSTDNIKHQPGGG 30



 Score = 33.1 bits (76), Expect = 0.003
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 12 PNLKKVTSKIGSLQNAHYKPGGGK 35
           +LK V SK GS  N  ++PGGG 
Sbjct: 8  LDLKNVQSKCGSTDNIKHQPGGGN 31



 Score = 28.9 bits (65), Expect = 0.11
 Identities = 11/20 (55%), Positives = 14/20 (70%)

Query: 75 NAKPKVGSLDNATHKPGGGD 94
          N + K GS DN  H+PGGG+
Sbjct: 12 NVQSKCGSTDNIKHQPGGGN 31


>gnl|CDD|223612 COG0538, Icd, Isocitrate dehydrogenases [Energy production and
           conversion].
          Length = 407

 Score = 28.0 bits (63), Expect = 1.6
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 12/83 (14%)

Query: 31  PGGGKVKIENRKLEWKAEPRIAAKNDEYVPGGGDKKIEVVKLNWNAKPKVGSLDNATHKP 90
           P G K+ ++N KL    +P I      ++ G G    E+ +  W    KV  +D A  K 
Sbjct: 1   PAGEKITVKNGKLMVPDKPIIP-----FIEGDGIGD-EITRAIW----KV--IDAAVEKA 48

Query: 91  GGGDKKIESVKLDFKDKAKPKVG 113
            GG++KIE  ++D  +KA+ K G
Sbjct: 49  YGGERKIEWKEVDAGEKARDKTG 71


>gnl|CDD|204879 pfam12317, IFT46_B_C, Intraflagellar transport complex B protein 46
           C terminal.  This family of proteins is found in
           eukaryotes. Proteins in this family are typically
           between 298 and 416 amino acids in length. IFT46 is a
           flagellar protein of complex B. Like all IFT proteins,
           it is required for transport of IFT particles into the
           flagella.
          Length = 214

 Score = 26.1 bits (58), Expect = 5.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 79  KVGSLDNATHKPGGGDKKIESVKLDFKDKAKPKV 112
            VGS+++A   P   D  IES+K   +DK  P V
Sbjct: 104 VVGSIEDAEKNPKAIDTWIESIKELHRDKPPPTV 137


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.307    0.132    0.384 

Gapped
Lambda     K      H
   0.267   0.0726    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,498,077
Number of extensions: 562821
Number of successful extensions: 178
Number of sequences better than 10.0: 1
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 14
Length of query: 131
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 45
Effective length of database: 7,123,158
Effective search space: 320542110
Effective search space used: 320542110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 53 (24.2 bits)