RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10937
         (131 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.1 bits (62), Expect = 1.1
 Identities = 11/71 (15%), Positives = 20/71 (28%), Gaps = 29/71 (40%)

Query: 31   PGGGKVKIENRKLEWKAEPRIAAKNDEYV-------PG-----GGD-------------- 64
            PG          L++  E R+  +    V               GD              
Sbjct: 1814 PGRVAASFSQEALQYVVE-RVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFI 1872

Query: 65   --KKIEVVKLN 73
              +KI++++L 
Sbjct: 1873 KLQKIDIIELQ 1883


>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding,
           cell inner MEM cell membrane, kinase, membrane,
           nucleotide-binding; 2.50A {Escherichia coli}
          Length = 222

 Score = 27.5 bits (62), Expect = 1.2
 Identities = 7/15 (46%), Positives = 10/15 (66%), Gaps = 1/15 (6%)

Query: 116 DN-LKHSPGGGTVKV 129
           DN +++SP G  V V
Sbjct: 127 DNAVRYSPQGSVVDV 141


>1ta8_A DNA ligase, NAD-dependent; nucleotidyl transferase fold; HET: DNA
          NMN; 1.80A {Enterococcus faecalis} SCOP: d.142.2.2 PDB:
          3ba8_A* 1tae_A* 3ba9_A* 3baa_A* 3bab_A*
          Length = 332

 Score = 25.5 bits (57), Expect = 6.7
 Identities = 6/25 (24%), Positives = 9/25 (36%), Gaps = 2/25 (8%)

Query: 5  QVGAAPSPNLKKVTSKIG--SLQNA 27
          +VG       +K    I   SL + 
Sbjct: 68 RVGGKVLSGFEKAPHDIPMYSLNDG 92


>1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus
          stearothermophilus} SCOP: d.142.2.2
          Length = 318

 Score = 25.1 bits (56), Expect = 8.1
 Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 2/25 (8%)

Query: 5  QVGAAPSPNLKKVTSKIG--SLQNA 27
          ++G  P    +KV  ++   SL NA
Sbjct: 63 RIGGPPLEAFRKVAHRVPMMSLANA 87


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.307    0.132    0.384 

Gapped
Lambda     K      H
   0.267   0.0760    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,952,021
Number of extensions: 107503
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 10
Length of query: 131
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 48
Effective length of database: 4,384,350
Effective search space: 210448800
Effective search space used: 210448800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 52 (23.7 bits)