RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10937
         (131 letters)



>d2czra1 c.52.4.1 (A:1-218) TBP-interacting protein {Thermococcus
          kodakaraensis [TaxId: 311400]}
          Length = 218

 Score = 24.9 bits (54), Expect = 3.6
 Identities = 12/47 (25%), Positives = 23/47 (48%)

Query: 11 SPNLKKVTSKIGSLQNAHYKPGGGKVKIENRKLEWKAEPRIAAKNDE 57
          SP  KKV +++  L + H++  G  +   ++K   K    +A   +E
Sbjct: 6  SPGTKKVYTQVRYLDDYHWEIEGSTITGIHKKSNVKVVIDVAKNREE 52


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.307    0.132    0.384 

Gapped
Lambda     K      H
   0.267   0.0634    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 488,502
Number of extensions: 21329
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 6
Length of query: 131
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 55
Effective length of database: 1,364,116
Effective search space: 75026380
Effective search space used: 75026380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 48 (22.5 bits)