Query psy10938
Match_columns 314
No_of_seqs 346 out of 1277
Neff 10.8
Searched_HMMs 29240
Date Fri Aug 16 22:20:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10938.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10938hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 8.1E-31 2.8E-35 235.3 17.5 291 24-314 8-472 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 9.6E-28 3.3E-32 212.9 20.1 282 23-305 23-433 (451)
3 3o7q_A L-fucose-proton symport 100.0 5.6E-27 1.9E-31 207.2 21.4 271 24-297 22-424 (438)
4 4aps_A DI-OR tripeptide H+ sym 99.9 4.4E-24 1.5E-28 191.6 11.3 249 57-305 48-471 (491)
5 2gfp_A EMRD, multidrug resista 99.9 1.5E-24 5.2E-29 187.9 6.7 263 31-297 3-367 (375)
6 2cfq_A Lactose permease; trans 99.9 1.1E-22 3.8E-27 178.8 17.5 273 39-311 18-406 (417)
7 2xut_A Proton/peptide symporte 99.8 1.1E-19 3.9E-24 164.2 13.8 96 36-131 20-124 (524)
8 3o7q_A L-fucose-proton symport 99.4 3.8E-12 1.3E-16 112.0 15.7 119 165-283 59-181 (438)
9 1pw4_A Glycerol-3-phosphate tr 99.4 2.9E-12 9.8E-17 113.2 14.6 144 165-308 60-210 (451)
10 4aps_A DI-OR tripeptide H+ sym 99.4 4E-12 1.4E-16 113.7 15.1 139 165-303 52-194 (491)
11 2gfp_A EMRD, multidrug resista 99.4 2.7E-13 9.4E-18 117.0 7.1 145 165-309 33-179 (375)
12 2xut_A Proton/peptide symporte 99.3 2.8E-11 9.7E-16 109.1 13.7 140 165-304 52-197 (524)
13 4gc0_A D-xylose-proton symport 99.2 5.8E-10 2E-14 99.6 14.9 116 167-282 55-188 (491)
14 2cfq_A Lactose permease; trans 98.8 2.6E-08 8.7E-13 87.2 9.7 134 60-208 256-390 (417)
15 2g9p_A Antimicrobial peptide l 57.9 2.3 8E-05 19.2 0.1 13 83-95 3-15 (26)
16 4dve_A Biotin transporter BIOY 31.2 79 0.0027 23.9 4.9 25 69-93 99-123 (198)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.97 E-value=8.1e-31 Score=235.34 Aligned_cols=291 Identities=18% Similarity=0.234 Sum_probs=210.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc--------ccchhhHHhHhhHHHHHHhhhhhhhcccccchhHH
Q psy10938 24 KFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGM--------TSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKIT 95 (314)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~ 95 (314)
++.+.+.+..+++.++.++|...++..+|.+.++++. +..+.|++.+++.+|..+|++++|+++||+|||++
T Consensus 8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~ 87 (491)
T 4gc0_A 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 4556666677788899999999999999988887743 33567899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHH------------------hhhHHHHHHHHHHHhhcccC--------------C-----------
Q psy10938 96 LIGALLVDGLCGIASS------------------VAQYYGVFLALRFINGFASR--------------P----------- 132 (314)
Q Consensus 96 l~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~~--------------P----------- 132 (314)
+.++.+++.++.++++ +++|+++++++|+++|++.| |
T Consensus 88 l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~ 167 (491)
T 4gc0_A 88 LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFN 167 (491)
T ss_dssp HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhh
Confidence 9999999999999988 58899999999999999988 1
Q ss_pred ----------------------------------------------------CC--------CCCcccch-hhhhhh---
Q psy10938 133 ----------------------------------------------------LI--------PGHPGKVA-SVCDVS--- 148 (314)
Q Consensus 133 ----------------------------------------------------l~--------~~~~~~~~-~~~~~~--- 148 (314)
++ +.+.++.. ..++..
T Consensus 168 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~ 247 (491)
T 4gc0_A 168 QFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNT 247 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCc
Confidence 00 00000000 000000
Q ss_pred --------------cCCcCCC-----cCcc---------------------------cccCCCChhHHHHHHHHHhhhhh
Q psy10938 149 --------------ALQPADN-----STVA---------------------------TCSGEVNPEVFSHTLIIGLACIP 182 (314)
Q Consensus 149 --------------~~~~~~~-----~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~ 182 (314)
+.++... .... ...+.............++...+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (491)
T 4gc0_A 248 LATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLT 327 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHH
Confidence 0000000 0000 22344455566667777888999
Q ss_pred HHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHH-HHhhhhhchhheeeecccccchhhHHH
Q psy10938 183 SSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQ----TSTQNLILSCIF-EALTGCCISVVYCIMVDLFPTNLRVLA 257 (314)
Q Consensus 183 ~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~r~~~ 257 (314)
+.++++++.||+|||+.+..+.....++++.+.... +.+.......+. ..+.....+..+.+.+|++|++.|+++
T Consensus 328 ~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~ 407 (491)
T 4gc0_A 328 FTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKA 407 (491)
T ss_dssp HHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHH
T ss_pred HHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHH
Confidence 999999999999999999888888777766554321 122222222222 223344456778899999999999999
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHhhhh-------HHHHHHHHHHHHHHHHHH-HhcccCCCCCCC
Q psy10938 258 AALSSTFGRFGGLTGNLMFGFLIDGHC-------LILICTLAAMLLIAGVFS-MFLPATGKKELD 314 (314)
Q Consensus 258 ~g~~~~~~~~g~~~~p~~~g~l~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~ 314 (314)
.|+.+..+++++.+++.+.+.+.+..+ ...+++++++++++.++. +++||||+|++|
T Consensus 408 ~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLe 472 (491)
T 4gc0_A 408 LAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLE 472 (491)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHH
Confidence 999999999999999999887765422 345777888887777765 456999999763
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.96 E-value=9.6e-28 Score=212.87 Aligned_cols=282 Identities=12% Similarity=0.130 Sum_probs=220.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHH
Q psy10938 23 GKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLV 102 (314)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~ 102 (314)
++.+++.+...++..+..+++...+.+.+|.+.+++ .+..+.|++.+++.++..++++++|+++||+|||+++..+.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 101 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence 345677788888888999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHh----hhHHHHHHHHHHHhhcccC--------------C--------------------------------
Q psy10938 103 DGLCGIASSV----AQYYGVFLALRFINGFASR--------------P-------------------------------- 132 (314)
Q Consensus 103 ~~~~~~~~~~----~~~~~~l~~~r~l~G~~~~--------------P-------------------------------- 132 (314)
.+++.+++++ ++|++.++++|+++|++.+ |
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 181 (451)
T 1pw4_A 102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW 181 (451)
T ss_dssp HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 9999999999999999988 1
Q ss_pred -------------------------CCCCCcccc-hhhhhhhc--------C---C-cCC-------CcCcc--------
Q psy10938 133 -------------------------LIPGHPGKV-ASVCDVSA--------L---Q-PAD-------NSTVA-------- 159 (314)
Q Consensus 133 -------------------------l~~~~~~~~-~~~~~~~~--------~---~-~~~-------~~~~~-------- 159 (314)
+++..++.+ .+..+..+ . + ..+ .+.+.
T Consensus 182 ~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (451)
T 1pw4_A 182 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIAN 261 (451)
T ss_dssp TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHH
Confidence 111111000 00000000 0 0 000 00000
Q ss_pred -------------------cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHh--hhHHHHHHHHHHHH-HHHHHHHHh
Q psy10938 160 -------------------TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKM--GAKWFLVAGLVLSS-GVAMALYYV 217 (314)
Q Consensus 160 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~~~~~-~~~~~~~~~ 217 (314)
+..+.+..+.+.......++.+++.++.+++.||+ +||+.+..+..+.. ++++++.+.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (451)
T 1pw4_A 262 VFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN 341 (451)
T ss_dssp HHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh
Confidence 23566777888889999999999999999999999 99988877776666 555555554
Q ss_pred c--chhHHHHHHHHHHHhhhhhchhheeeecccccchhhHHHHHHHHhhhhh-hhhhHHHHHHHHHhhhh-HHHHHHHHH
Q psy10938 218 Q--TSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRF-GGLTGNLMFGFLIDGHC-LILICTLAA 293 (314)
Q Consensus 218 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~-g~~~~p~~~g~l~~~~~-~~~~~~~~~ 293 (314)
+ +.+......++.+++.+...+..+.+..|.+|++.|+++.|+.+...++ |..++|.+.|.+.|..+ ...+++.++
T Consensus 342 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~ 421 (451)
T 1pw4_A 342 PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIG 421 (451)
T ss_dssp CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 3 4444555566677777777888889999999999999999999999999 99999999999999877 566777777
Q ss_pred HHHHHHHHHHhc
Q psy10938 294 MLLIAGVFSMFL 305 (314)
Q Consensus 294 ~~~~~~~~~~~~ 305 (314)
+.+++.++.++.
T Consensus 422 ~~~~~~~~~~~~ 433 (451)
T 1pw4_A 422 GSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777766655543
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.95 E-value=5.6e-27 Score=207.24 Aligned_cols=271 Identities=14% Similarity=0.139 Sum_probs=209.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHH
Q psy10938 24 KFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVD 103 (314)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~ 103 (314)
++++..+..++...+..+++.....+..|.+.+++|+|+.+.|++.+.+.+++.++++++|+++||+|||+++..+.++.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHH
Confidence 34456666777788888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHH---HhhhHHHHHHHHHHHhhcccC--------------C----------------------------CC-CCC
Q psy10938 104 GLCGIAS---SVAQYYGVFLALRFINGFASR--------------P----------------------------LI-PGH 137 (314)
Q Consensus 104 ~~~~~~~---~~~~~~~~l~~~r~l~G~~~~--------------P----------------------------l~-~~~ 137 (314)
+++.+++ .++++++.++++|++.|++.+ | +. ...
T Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 181 (438)
T 3o7q_A 102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV 181 (438)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSS
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999 888999999999999999998 1 11 111
Q ss_pred cc------------------------cchhh-------------hhhhcCC---cC-----CCcC-----------cc--
Q psy10938 138 PG------------------------KVASV-------------CDVSALQ---PA-----DNST-----------VA-- 159 (314)
Q Consensus 138 ~~------------------------~~~~~-------------~~~~~~~---~~-----~~~~-----------~~-- 159 (314)
.. -+... .-..+.+ ++ ++.. +.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (438)
T 3o7q_A 182 PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIRHWR 261 (438)
T ss_dssp CCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSSTTSHHHHHHHHTTCSHHH
T ss_pred ccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccchhhhHHHHHhChHHH
Confidence 00 00000 0000000 00 0000 00
Q ss_pred --------------------------cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy10938 160 --------------------------TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMA 213 (314)
Q Consensus 160 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 213 (314)
+..+.+..+.+.......++.+++.++.+++.||++||+.+..+..+..++.++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~ 341 (438)
T 3o7q_A 262 WAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLI 341 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 122667778888888999999999999999999999999999999888888887
Q ss_pred HHHhcchhHHHHHHHHHHHhhhhhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-H-HHHHHH
Q psy10938 214 LYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-L-ILICTL 291 (314)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~-~~~~~~ 291 (314)
..+.++.+. ....++.+++.+..++..+++..|.+|++ ++++.++.. ...+|+.++|.+.|.+.|..+ . ..+++.
T Consensus 342 ~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~ 418 (438)
T 3o7q_A 342 SAFAGGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIP 418 (438)
T ss_dssp HHHCCHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHH
T ss_pred HHHcCCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 777766544 34446677788888899999989999876 888888877 677999999999999999877 3 344444
Q ss_pred HHHHHH
Q psy10938 292 AAMLLI 297 (314)
Q Consensus 292 ~~~~~~ 297 (314)
+++.++
T Consensus 419 ~~~~~~ 424 (438)
T 3o7q_A 419 ALCFAV 424 (438)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 433333
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.90 E-value=4.4e-24 Score=191.58 Aligned_cols=249 Identities=10% Similarity=-0.012 Sum_probs=181.8
Q ss_pred ccccccchhhHHhHhhHHHHHHhhhhhhhcccc-cchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHhhcccC----
Q psy10938 57 DFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADT-QGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFASR---- 131 (314)
Q Consensus 57 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~---- 131 (314)
|+|.|..+.+++.+.+.++..++++++|+++|| +|||+++..+.++..++.+++++++|++.+++.|+++|++.+
T Consensus 48 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 127 (491)
T 4aps_A 48 DLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKP 127 (491)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccc
Confidence 399999999999999999999999999999999 899999999999999999999999999999999999999988
Q ss_pred ----------C--------------------------------------------------------------CCCC--C
Q psy10938 132 ----------P--------------------------------------------------------------LIPG--H 137 (314)
Q Consensus 132 ----------P--------------------------------------------------------------l~~~--~ 137 (314)
| .+++ .
T Consensus 128 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (491)
T 4aps_A 128 NVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLR 207 (491)
T ss_dssp HHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSC
T ss_pred hHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccC
Confidence 1 0110 1
Q ss_pred ccc---chhhhhh------------------------------------------------hcCCc----CCCcCcc---
Q psy10938 138 PGK---VASVCDV------------------------------------------------SALQP----ADNSTVA--- 159 (314)
Q Consensus 138 ~~~---~~~~~~~------------------------------------------------~~~~~----~~~~~~~--- 159 (314)
+++ .++..+. .+.+. .++....
T Consensus 208 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (491)
T 4aps_A 208 PTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIP 287 (491)
T ss_dssp CSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHH
T ss_pred CCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 111 1111110 00000 0000000
Q ss_pred ------------------------cccCCCChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHH-----HHHHHHHHH
Q psy10938 160 ------------------------TCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLV-----AGLVLSSGV 210 (314)
Q Consensus 160 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~-----~~~~~~~~~ 210 (314)
+..+.+....+.......+...++..+.+++.||++||+... .+..+.+++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~ 367 (491)
T 4aps_A 288 LFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLS 367 (491)
T ss_dssp HHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Confidence 112333344555666777788888899999999999876544 566666666
Q ss_pred HHHHHHhc---------chhHHHHHHHHHHHhhhhhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHh
Q psy10938 211 AMALYYVQ---------TSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLID 281 (314)
Q Consensus 211 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~ 281 (314)
++++.... +.+......++.+++.+...+..+.+..|.+|++.|+++.|+.+...++|..++|.+.+.+.+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~ 447 (491)
T 4aps_A 368 FLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA 447 (491)
T ss_dssp HTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55554432 444555566667777788888889999999999999999999999999999999999998887
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhc
Q psy10938 282 GHCLILICTLAAMLLIAGVFSMFL 305 (314)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~ 305 (314)
......+...+.+.+++.++.++.
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~ 471 (491)
T 4aps_A 448 KSEVAYFSYFGLGSVVLGIVLVFL 471 (491)
T ss_dssp SSTTHHHHHTHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 765667777777777766665554
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.90 E-value=1.5e-24 Score=187.93 Aligned_cols=263 Identities=13% Similarity=0.078 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHH
Q psy10938 31 IFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIAS 110 (314)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~ 110 (314)
..++...+...++...+.+.+|.+.+++|.|+.+.+++.+.+.++..++++++|+++||+|||+++..+..+..++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 44566677788888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHHhhcccC---C-------------------------------------------------------
Q psy10938 111 SVAQYYGVFLALRFINGFASR---P------------------------------------------------------- 132 (314)
Q Consensus 111 ~~~~~~~~l~~~r~l~G~~~~---P------------------------------------------------------- 132 (314)
.+++|++.+++.|++.|++.+ |
T Consensus 83 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (375)
T 2gfp_A 83 VTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLV 162 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHH
Confidence 999999999999999999988 1
Q ss_pred ------------CCCCCcccchhhhhhhcCCcCCCcCcc---------------------------cccCCCChhHHHHH
Q psy10938 133 ------------LIPGHPGKVASVCDVSALQPADNSTVA---------------------------TCSGEVNPEVFSHT 173 (314)
Q Consensus 133 ------------l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~ 173 (314)
+++++++++++ ++..+..++..+++. +..+.+..+.+...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~ 241 (375)
T 2gfp_A 163 LCAGVTFSMARWMPETRPVDAPR-TRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILF 241 (375)
T ss_dssp HHHHHHCCCCCSSCCCSTTTCCC-CCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcccCCCCccc-ccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 11111111000 000000000000000 11344455667777
Q ss_pred HHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHH-HHHHHH--HHHH--hcchhHHHHHHHHHHHhhhhhchhheeeeccc
Q psy10938 174 LIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVL-SSGVAM--ALYY--VQTSTQNLILSCIFEALTGCCISVVYCIMVDL 248 (314)
Q Consensus 174 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (314)
....++.+++..+.+++.||++++... +... ...+.. .... .++.+......++.+++.+...+....+..|.
T Consensus 242 ~~~~~~~~~~~~~~~~l~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 319 (375)
T 2gfp_A 242 ILPIPAAFFGAWFAGRPNKRFSTLMWQ--SVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEP 319 (375)
T ss_dssp HTHHHHHHHHHHHHHTTTTHHHHHHHH--HHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 888888889999999999998873322 2222 121111 1222 12344444556667778888889999999999
Q ss_pred ccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhHHHHHHHHHHHHH
Q psy10938 249 FPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHCLILICTLAAMLLI 297 (314)
Q Consensus 249 ~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~~~~~~~~~~~~~~ 297 (314)
.| ++|+++.|+.+...++|..++|.+.|.+.+..+....+....+.++
T Consensus 320 ~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~ 367 (375)
T 2gfp_A 320 FP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMGLL 367 (375)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 98 8999999999999999999999999999887665544444444333
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.90 E-value=1.1e-22 Score=178.81 Aligned_cols=273 Identities=12% Similarity=0.051 Sum_probs=173.1
Q ss_pred HHHHHHHHHHhhccc-cccccccccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHh---HHHHhhh
Q psy10938 39 YAAISITVLSFVLPS-AQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCG---IASSVAQ 114 (314)
Q Consensus 39 ~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~---~~~~~~~ 114 (314)
..........+.+|. +++++|.|+.+.|++.+.+.+++.++++++|+++||+|||++++.+..+..++. ....+++
T Consensus 18 ~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~ 97 (417)
T 2cfq_A 18 FYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP 97 (417)
T ss_dssp HHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445566665 456799999999999999999999999999999999999999998887665421 1112222
Q ss_pred HHH-HHHHHHHHhhcccC---------------------------------------C----------------------
Q psy10938 115 YYG-VFLALRFINGFASR---------------------------------------P---------------------- 132 (314)
Q Consensus 115 ~~~-~l~~~r~l~G~~~~---------------------------------------P---------------------- 132 (314)
... .+...+++.|++.+ |
T Consensus 98 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~ 177 (417)
T 2cfq_A 98 LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCA 177 (417)
T ss_dssp HHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 211 12334444444332 1
Q ss_pred ---------CCCCCcccc-hhhhhhhcCCcCC-C------cCcc---------------------------cccCC---C
Q psy10938 133 ---------LIPGHPGKV-ASVCDVSALQPAD-N------STVA---------------------------TCSGE---V 165 (314)
Q Consensus 133 ---------l~~~~~~~~-~~~~~~~~~~~~~-~------~~~~---------------------------~~~~~---~ 165 (314)
++++.++.. .+..+..+.++.. + +.+. ...+. .
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (417)
T 2cfq_A 178 LILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQG 257 (417)
T ss_dssp TTHHHHSCSSCCCCSCSSCSSSSSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHH
T ss_pred HHHHHHHHHcCcccccccccccccccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 011110000 0000000000000 0 0000 00110 1
Q ss_pred ChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheeee
Q psy10938 166 NPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIM 245 (314)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (314)
....+....+..+..+++.++.+++.||+|||+.+..+..+.++..+...+.++.+......++.+++.....+..+.+.
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22234455566677888899999999999999998888888777766666555555544444445555555555667899
Q ss_pred cccccchhhHHHHHHH-HhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhc-ccCCCC
Q psy10938 246 VDLFPTNLRVLAAALS-STFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFSMFL-PATGKK 311 (314)
Q Consensus 246 ~~~~p~~~r~~~~g~~-~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 311 (314)
.|.+|++.|+++.+.. +...++|+.++|.+.|.+.|..+ ...|.+.+++.+++.++.+.. +|+++.
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~ 406 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPL 406 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTT
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCch
Confidence 9999999999999995 88888999999999999999877 456667777777776665543 655443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.82 E-value=1.1e-19 Score=164.17 Aligned_cols=96 Identities=16% Similarity=0.088 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHhhc-cccccccc------cccchhhHHhHhhHHHHHHhhhhhhhccccc-chhHHHHHHHHHHHHHh
Q psy10938 36 LYAYAAISITVLSFVL-PSAQCDFG------MTSSDKGWLNAAPMLGMVFGSYFWGCLADTQ-GRKITLIGALLVDGLCG 107 (314)
Q Consensus 36 ~~~~~~~~~~~~~~~~-~~~~~~~~------~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~ 107 (314)
..+...+......+.+ +.+.+++| .+..+.+++.+.+.++..++++++|+++||+ |||+++..+.++..++.
T Consensus 20 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~ 99 (524)
T 2xut_A 20 SEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGH 99 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 3344444443333443 44567888 9999999999999999999999999999999 99999999999999999
Q ss_pred HHHHhhh-HHHHHHHHHHHhhcccC
Q psy10938 108 IASSVAQ-YYGVFLALRFINGFASR 131 (314)
Q Consensus 108 ~~~~~~~-~~~~l~~~r~l~G~~~~ 131 (314)
++..+++ +++.+++.|++.|++.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~g~~~~ 124 (524)
T 2xut_A 100 AFLAIFEHSVQGFYTGLFLIALGSG 124 (524)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccHHHHHHHHHHHHHhcc
Confidence 9999999 99999999999999987
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.42 E-value=3.8e-12 Score=111.98 Aligned_cols=119 Identities=19% Similarity=0.136 Sum_probs=109.5
Q ss_pred CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---HHhcchhHHHHHHHHHHHhhhhhchhh
Q psy10938 165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMAL---YYVQTSTQNLILSCIFEALTGCCISVV 241 (314)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (314)
+..+.++..+...++..++.++.|++.||+|||+.+..+..+.+++.++. .+.++.+..++..++.+++.+...+..
T Consensus 59 s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~ 138 (438)
T 3o7q_A 59 TNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAA 138 (438)
T ss_dssp CSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhH
Confidence 56778889999999999999999999999999999999999999988888 777888888888889999999999999
Q ss_pred eeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHH-hhh
Q psy10938 242 YCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLI-DGH 283 (314)
Q Consensus 242 ~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~-~~~ 283 (314)
.+++.|.+|+++|+++.++.+....+|..++|.+.+.+. +..
T Consensus 139 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 181 (438)
T 3o7q_A 139 NPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV 181 (438)
T ss_dssp HHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSS
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999998 443
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.42 E-value=2.9e-12 Score=113.18 Aligned_cols=144 Identities=16% Similarity=0.130 Sum_probs=123.3
Q ss_pred CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH----hcchhHHHHHHHHHHHhhhhhchh
Q psy10938 165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYY----VQTSTQNLILSCIFEALTGCCISV 240 (314)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 240 (314)
+..+.++..+...++..++.++.|+++||+|||+++..+..+.+++.++..+ .++.+..++..++.+++.+...+.
T Consensus 60 s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~ 139 (451)
T 1pw4_A 60 SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPP 139 (451)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccch
Confidence 4556788889999999999999999999999999999999999999999888 888888888888899999999999
Q ss_pred heeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHH-HhcccC
Q psy10938 241 VYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC--LILICTLAAMLLIAGVFS-MFLPAT 308 (314)
Q Consensus 241 ~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~ 308 (314)
..+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..+ ...+++.+++.++..++. .++||+
T Consensus 140 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~ 210 (451)
T 1pw4_A 140 CGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDT 210 (451)
T ss_dssp HHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 99999999999999999999999999999999999999887765 345666666665555443 445654
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.41 E-value=4e-12 Score=113.67 Aligned_cols=139 Identities=14% Similarity=0.013 Sum_probs=120.5
Q ss_pred CChhHHHHHHHHHhhhhhHHhHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhhee
Q psy10938 165 VNPEVFSHTLIIGLACIPSSLAMPLLVHK-MGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYC 243 (314)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (314)
+..+.+...+...++..++.++.|+++|| +|||+++..+..+..++.++..+.++.+..++..++.+++.+...+...+
T Consensus 52 s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 131 (491)
T 4aps_A 52 TRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVST 131 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHH
Confidence 56778888999999999999999999999 89999999999999999998888888888888888889999999999999
Q ss_pred eecccccchh--hHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHH
Q psy10938 244 IMVDLFPTNL--RVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFSM 303 (314)
Q Consensus 244 ~~~~~~p~~~--r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~ 303 (314)
++.|.+|++. |+++.++.+...++|..++|.+.+.+.+..+ ...+++.++..+++.+...
T Consensus 132 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 194 (491)
T 4aps_A 132 LVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYY 194 (491)
T ss_dssp HHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988 7888888999999999999999999999877 4556666555555555444
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.40 E-value=2.7e-13 Score=116.99 Aligned_cols=145 Identities=15% Similarity=0.002 Sum_probs=123.5
Q ss_pred CChhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhchhheee
Q psy10938 165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCI 244 (314)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (314)
+..+.+...+...++..++.+..|+++||+|||+.+..+..+..++.+...+.++.+..+...++.+++.+...+....+
T Consensus 33 s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~ 112 (375)
T 2gfp_A 33 REGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTL 112 (375)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 56678888999999999999999999999999999999999999999888888888887888888888888899999999
Q ss_pred ecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHH-HhcccCC
Q psy10938 245 MVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFS-MFLPATG 309 (314)
Q Consensus 245 ~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~ 309 (314)
+.|.+|+++|+++.++.+....+|..++|.+.+.+.+..+ ...+++.++..++..+.. ..+||++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (375)
T 2gfp_A 113 PRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETR 179 (375)
T ss_dssp HHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCS
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccC
Confidence 9999999999999999999999999999999999998766 455666666655554422 3446654
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.30 E-value=2.8e-11 Score=109.06 Aligned_cols=140 Identities=12% Similarity=0.031 Sum_probs=118.0
Q ss_pred CChhHHHHHHHHHhhhhhHHhHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHhhhhhchhhe
Q psy10938 165 VNPEVFSHTLIIGLACIPSSLAMPLLVHKM-GAKWFLVAGLVLSSGVAMALYYVQ-TSTQNLILSCIFEALTGCCISVVY 242 (314)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 242 (314)
+..+.+...+...++..++.++.|+++||+ |||+.+..+..+..++.++..+.+ +.+..+...++.+++.+...+...
T Consensus 52 s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 131 (524)
T 2xut_A 52 RGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVS 131 (524)
T ss_dssp TTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHH
Confidence 566788888999999999999999999999 999999999999999988888887 777777778888888899999999
Q ss_pred eeecccccchhhHHHHHH---HHhhhhhhhhhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHh
Q psy10938 243 CIMVDLFPTNLRVLAAAL---SSTFGRFGGLTGNLMFGFLIDGHC-LILICTLAAMLLIAGVFSMF 304 (314)
Q Consensus 243 ~~~~~~~p~~~r~~~~g~---~~~~~~~g~~~~p~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~ 304 (314)
+++.|.+|+++|+++.+. .+...++|..++|.+.+.+.+..+ ...+++.+++.+++.+...+
T Consensus 132 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 132 SFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999776666 888899999999999999998766 45566666665555554443
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.16 E-value=5.8e-10 Score=99.58 Aligned_cols=116 Identities=14% Similarity=0.026 Sum_probs=100.7
Q ss_pred hhHHHHHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH------------------hcchhHHHHHHH
Q psy10938 167 PEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYY------------------VQTSTQNLILSC 228 (314)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~ 228 (314)
...++..+...++..+|.++.|+++||+|||+.+.++.++..++.++..+ .++.+..++.-+
T Consensus 55 ~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~ 134 (491)
T 4gc0_A 55 SLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRI 134 (491)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHH
Confidence 34566777788999999999999999999999999999998888877663 456677788889
Q ss_pred HHHHhhhhhchhheeeecccccchhhHHHHHHHHhhhhhhhhhHHHHHHHHHhh
Q psy10938 229 IFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDG 282 (314)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~p~~~g~l~~~ 282 (314)
+.|++.+...+....++.|..|++.|++..++.+.....|...++.+.....+.
T Consensus 135 l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~ 188 (491)
T 4gc0_A 135 IGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARS 188 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccc
Confidence 999999999999999999999999999999999999999998888887666543
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.77 E-value=2.6e-08 Score=87.16 Aligned_cols=134 Identities=14% Similarity=-0.005 Sum_probs=87.3
Q ss_pred cccchhhHHhHhhHHHHHHhhhhhhhcccccchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHhhcccCCCCCCCcc
Q psy10938 60 MTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFASRPLIPGHPG 139 (314)
Q Consensus 60 ~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~Pl~~~~~~ 139 (314)
.+..+.++..+...++..++.++.|+++||+|||+++..+..+.+++.+..++.++.+.+++..++.+++.+ -....
T Consensus 256 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~ 332 (417)
T 2cfq_A 256 QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVP---FLLVG 332 (417)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHH---HHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH---HHHHH
Confidence 345567888888889999999999999999999999999998888887777777888777777666666543 00000
Q ss_pred cchhhhhhhcCCcCCCcCcccccCCCChhHHH-HHHHHHhhhhhHHhHHHHHHHHhhhHHHHHHHHHHHH
Q psy10938 140 KVASVCDVSALQPADNSTVATCSGEVNPEVFS-HTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSS 208 (314)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 208 (314)
......+....+. .....+. ......++..+++.+.|++.|+.|....+.....+..
T Consensus 333 ~~~~~~~~~p~~~------------~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l 390 (417)
T 2cfq_A 333 CFKYITSQFEVRF------------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVAL 390 (417)
T ss_dssp HHHHHHHHSCHHH------------HHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHH------------HHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHH
Confidence 0111111111100 1111222 2344557888899999999998886655544443333
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=57.93 E-value=2.3 Score=19.25 Aligned_cols=13 Identities=38% Similarity=0.557 Sum_probs=10.7
Q ss_pred hhhcccccchhHH
Q psy10938 83 WGCLADTQGRKIT 95 (314)
Q Consensus 83 ~g~l~dr~Grr~~ 95 (314)
+|.+..+||||.+
T Consensus 3 fgklikkfgrkai 15 (26)
T 2g9p_A 3 FGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHTSHHH
T ss_pred HHHHHHHHhHHHH
Confidence 5788899999875
No 16
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=31.18 E-value=79 Score=23.87 Aligned_cols=25 Identities=8% Similarity=0.202 Sum_probs=20.5
Q ss_pred hHhhHHHHHHhhhhhhhcccccchh
Q psy10938 69 NAAPMLGMVFGSYFWGCLADTQGRK 93 (314)
Q Consensus 69 ~s~~~~~~~i~~~~~g~l~dr~Grr 93 (314)
+.-|.+|+.+++.+.|++.||..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 5567888999999999999987644
Done!