RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10938
(314 letters)
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
PFAM model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 92.3 bits (229), Expect = 1e-20
Identities = 49/129 (37%), Positives = 67/129 (51%)
Query: 7 EQFDATFENALAAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKG 66
E+ +E + G+G+F + L GL + + V+ FVLPSA+ D + S KG
Sbjct: 146 EELAQQYELIIQECGHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKG 205
Query: 67 WLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFIN 126
L LGM+ G++FWG LAD GRK L+ L V+G SS Q YG FL R ++
Sbjct: 206 MLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLS 265
Query: 127 GFASRPLIP 135
GF IP
Sbjct: 266 GFGIGGAIP 274
Score = 46.1 bits (109), Expect = 1e-05
Identities = 32/131 (24%), Positives = 60/131 (45%)
Query: 178 LACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCC 237
LA +P ++ LL+ K+G L +VLS L + + + + L C+F L+
Sbjct: 606 LAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAA 665
Query: 238 ISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHCLILICTLAAMLLI 297
+ + + V+L+P++ R A + + + G L+FG + I +A L
Sbjct: 666 WNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALAC 725
Query: 298 AGVFSMFLPAT 308
G+ ++ LP T
Sbjct: 726 GGLLALKLPDT 736
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 60.1 bits (146), Expect = 3e-10
Identities = 27/103 (26%), Positives = 53/103 (51%)
Query: 25 FHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWG 84
+ + +I L+ + + F P+ ++G+ G+L +A ++GM FG+ F+G
Sbjct: 14 YQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFG 73
Query: 85 CLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFING 127
LAD GR+ L+ ++L+ + + ++A L LRF+ G
Sbjct: 74 PLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAG 116
Score = 31.2 bits (71), Expect = 0.73
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 202 AGLVLSSGVAMALYYVQTSTQN-LILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAAL 260
L+L + A+ + S L+L I S +Y +M +PT +R
Sbjct: 319 LLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGW 378
Query: 261 SSTFGRFGGLTGNLMFGFLI 280
+ GR G + G ++ G+L+
Sbjct: 379 AIGIGRLGAIIGPILAGYLL 398
Score = 28.1 bits (63), Expect = 6.8
Identities = 27/96 (28%), Positives = 38/96 (39%)
Query: 35 LLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKI 94
LLY + + L+ LP + G + S A G V GS +G LAD G ++
Sbjct: 257 LLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRV 316
Query: 95 TLIGALLVDGLCGIASSVAQYYGVFLALRFINGFAS 130
T + LL + S + L L I GF
Sbjct: 317 TALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFV 352
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 50.8 bits (122), Expect = 5e-07
Identities = 35/142 (24%), Positives = 64/142 (45%), Gaps = 3/142 (2%)
Query: 174 LIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEAL 233
I GL +P+ L LL+ ++G ++ + A L+L+ + L +V L +
Sbjct: 362 FISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGK 421
Query: 234 TGCCI--SVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHCLILICTL 291
G +VY +L+PT +R L + ST R G + + +L + + +
Sbjct: 422 FGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLV-YLGEKWLFLPLVLF 480
Query: 292 AAMLLIAGVFSMFLPATGKKEL 313
+ L+AG+ ++FLP T L
Sbjct: 481 GGLALLAGILTLFLPETKGVPL 502
Score = 49.6 bits (119), Expect = 1e-06
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 46 VLSFVLPSAQCDFGMTSSDKGWLNAAP----MLGMVFGSYFWGCLADTQGRKITLIGALL 101
+ ++ + D W +G++ GS+ +G L+D GRK L+ + L
Sbjct: 107 SYDTFSSTIVTEWDLVCEDA-WKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTL 165
Query: 102 VDGLCGIASSVAQYYGVFLALRFINGFAS 130
V + G+ ++ + Y VFL R + G
Sbjct: 166 VTAVSGVLTAFSPNYTVFLVFRLLVGMGI 194
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 47.3 bits (113), Expect = 4e-06
Identities = 59/279 (21%), Positives = 102/279 (36%), Gaps = 18/279 (6%)
Query: 30 VIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADT 89
++ L + + + +LS LP D G+++S G + +A LG GS G L+D
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 90 QGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFASRPLIPGHPGKVASVCDVSA 149
GR+ L+ LL+ L + + A + L RF+ G L P +A
Sbjct: 61 FGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE 120
Query: 150 LQPADNSTVATCSGEVNPEVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGLVLSSG 209
A + + GL + L LL +G +W + +L
Sbjct: 121 RGRA---------------LGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLL 165
Query: 210 VAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGG 269
+A+ L ++ L L+ + + + + A L S FG GG
Sbjct: 166 LALLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFG-LGG 224
Query: 270 LTGNLMFGFLID--GHCLILICTLAAMLLIAGVFSMFLP 306
+ G L+ G L D G +L+ + + + P
Sbjct: 225 ILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAP 263
Score = 37.3 bits (87), Expect = 0.007
Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 1/134 (0%)
Query: 173 TLIIGLACIPSSLAMPLLVHKMGAKW-FLVAGLVLSSGVAMALYYVQTSTQNLILSCIFE 231
+ GL I +L LL ++G + L+ GL+L++ + L + L+ +
Sbjct: 217 LSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLG 276
Query: 232 ALTGCCISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLIDGHCLILICTL 291
G + + +L P R A+ L +TFG GG G L+ G L+D + +
Sbjct: 277 FGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLI 336
Query: 292 AAMLLIAGVFSMFL 305
A L + + L
Sbjct: 337 LAALALLAALLLLL 350
>gnl|CDD|182964 PRK11102, PRK11102, bicyclomycin/multidrug efflux system;
Provisional.
Length = 377
Score = 46.4 bits (111), Expect = 9e-06
Identities = 27/79 (34%), Positives = 44/79 (55%)
Query: 51 LPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIAS 110
LP DFG+++ +A +LG G F+G +AD+ GRK ++G LV L +A
Sbjct: 14 LPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVAC 73
Query: 111 SVAQYYGVFLALRFINGFA 129
++AQ + +RF++G A
Sbjct: 74 ALAQTIDQLIYMRFLHGLA 92
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 43.5 bits (103), Expect = 7e-05
Identities = 31/97 (31%), Positives = 46/97 (47%)
Query: 47 LSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLC 106
LSF P Q D G++++ G++ +A G V G + G L D G + TL +++ G+
Sbjct: 13 LSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVF 72
Query: 107 GIASSVAQYYGVFLALRFINGFASRPLIPGHPGKVAS 143
+ A Y LR + G A P PG VAS
Sbjct: 73 TGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVAS 109
Score = 27.7 bits (62), Expect = 8.9
Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 57 DFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRK-ITLIGALLVDGLCGIASSVA 113
+ G++ + G++ + P + G G L+D R+ +L+ A + G+ S+
Sbjct: 245 ERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLL 302
>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter
MhpT; Provisional.
Length = 406
Score = 43.4 bits (103), Expect = 1e-04
Identities = 24/71 (33%), Positives = 40/71 (56%)
Query: 57 DFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYY 116
+FG+ + GW +A +LG++ G+ G LAD GRK LI ++ + GL +A++ A +
Sbjct: 44 EFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDF 103
Query: 117 GVFLALRFING 127
L R + G
Sbjct: 104 PSLLVARLLTG 114
>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 12 membrane-spanning regions. Members with known
activity include Bcr (bicyclomycin resistance protein)
in E. coli, Flor (chloramphenicol and florfenicol
resistance) in Salmonella typhimurium DT104, and CmlA
(chloramphenicol resistance) in Pseudomonas sp. plasmid
R1033.
Length = 385
Score = 43.1 bits (102), Expect = 1e-04
Identities = 23/102 (22%), Positives = 37/102 (36%)
Query: 28 ILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLA 87
+ G L + I + P D +S +LG G WG L+
Sbjct: 5 AFALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLS 64
Query: 88 DTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFA 129
D GR+ L+ L + L + +++ L LRF+ F
Sbjct: 65 DRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFG 106
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 42.8 bits (101), Expect = 1e-04
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 1/103 (0%)
Query: 35 LLYAYAAISITVLSFVLPSA-QCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRK 93
L A + ++L LP D G++ ++ G L A LG G L+D GR+
Sbjct: 3 LAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRR 62
Query: 94 ITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFASRPLIPG 136
L+ LL+ L + A + L LR + G L P
Sbjct: 63 RVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPA 105
>gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator).
[Transport and binding proteins, Anions].
Length = 366
Score = 39.6 bits (93), Expect = 0.001
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 57 DFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGL-CGIASSVAQY 115
D G++++ G L A P+L G L D G + T +LL+ + C A Q
Sbjct: 31 DLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQS 90
Query: 116 YGVFLALRFINGFA 129
Y V L LR G A
Sbjct: 91 YSVLLLLRLFIGIA 104
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 39.6 bits (93), Expect = 0.002
Identities = 23/112 (20%), Positives = 42/112 (37%), Gaps = 10/112 (8%)
Query: 28 ILVIFGGLLYAY--------AAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFG 79
++ GG L+ Y + F ++ ++ G + + +G + G
Sbjct: 3 LVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLIG 62
Query: 80 SYFWGCLADTQGRKITLI--GALLVDGLCGIASSVAQYYGVFLALRFINGFA 129
S F G L D GRK +L+ L V G + + + + + R I G
Sbjct: 63 SLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLG 114
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport
and metabolism].
Length = 394
Score = 39.5 bits (93), Expect = 0.002
Identities = 23/84 (27%), Positives = 37/84 (44%)
Query: 46 VLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGL 105
V +LP D G++ G L A LG+ G+ L R+ L+G L + +
Sbjct: 31 VPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIV 90
Query: 106 CGIASSVAQYYGVFLALRFINGFA 129
+ S++A + V L R + G A
Sbjct: 91 SNLLSALAPSFAVLLLARALAGLA 114
>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter. [Transport
and binding proteins, Carbohydrates, organic alcohols,
and acids].
Length = 405
Score = 37.6 bits (87), Expect = 0.007
Identities = 21/95 (22%), Positives = 43/95 (45%)
Query: 35 LLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKI 94
L + A +++ VL +FG+T+ D L +A ++ FG+ +G D GR++
Sbjct: 19 LGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRL 78
Query: 95 TLIGALLVDGLCGIASSVAQYYGVFLALRFINGFA 129
++ ++++ +A A Y R + G
Sbjct: 79 PMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIG 113
>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and
metabolism].
Length = 448
Score = 37.2 bits (87), Expect = 0.008
Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 2/107 (1%)
Query: 25 FHYILVIFGGLLYAYAAISITVLSF--VLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYF 82
+ + IF + YAA +T +F +P+ D G++ + G L +A + +
Sbjct: 24 KRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFV 83
Query: 83 WGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFA 129
G L+D + + L++ + I + +F L +NG+
Sbjct: 84 MGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWF 130
>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional.
Length = 479
Score = 36.6 bits (85), Expect = 0.014
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 31 IFGGLLYAY--AAISITVLS---FVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGC 85
GGLL+ Y A IS TV S + +S G+ A+ ++G + G G
Sbjct: 18 TLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGY 77
Query: 86 LADTQGRKITLIGALLVDGLCGIASS 111
++ GR+ +L A ++ + + S+
Sbjct: 78 CSNRFGRRDSLKIAAVLFFISALGSA 103
>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional.
Length = 426
Score = 35.3 bits (81), Expect = 0.037
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
Query: 35 LLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKI 94
L Y + ++ +++ + D G+T + +L A +G FG +G LAD GRK
Sbjct: 25 LGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKP 84
Query: 95 TLIGALLV----DGLCGIASSVAQYYGVFLAL-RFING 127
++ +++ GL G+AS V + L L RFI G
Sbjct: 85 LMMWSIVAYSVGTGLSGLASGV-----IMLTLSRFIVG 117
>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein.
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 379
Score = 34.7 bits (80), Expect = 0.058
Identities = 14/83 (16%), Positives = 34/83 (40%)
Query: 47 LSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLC 106
+ +P + G++ +D G L ++ + + G ++D ++ L L++ +
Sbjct: 14 FALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIV 73
Query: 107 GIASSVAQYYGVFLALRFINGFA 129
+ + V AL +NG
Sbjct: 74 NLFFGFSTSLWVMAALWALNGIF 96
Score = 28.5 bits (64), Expect = 4.9
Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 5/87 (5%)
Query: 201 VAGLVLSSGVAMALY-YVQTSTQNLILSCIFEALTGCCI----SVVYCIMVDLFPTNLRV 255
+ + + ++L Y N ++ I G + ++ I +L P
Sbjct: 286 PLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAG 345
Query: 256 LAAALSSTFGRFGGLTGNLMFGFLIDG 282
AA F GG+ L G+L DG
Sbjct: 346 TAAGFVGFFAYLGGILAGLPLGYLADG 372
>gnl|CDD|182127 PRK09874, PRK09874, drug efflux system protein MdtG; Provisional.
Length = 408
Score = 33.4 bits (76), Expect = 0.13
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 80 SYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGF 128
S FWG LAD +GRKI L+ + L G+ + +AQ FL LR + G
Sbjct: 71 SPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGL 119
>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter. This model represents
the phosphate uptake symporter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Anions].
Length = 502
Score = 31.6 bits (72), Expect = 0.48
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 17/82 (20%)
Query: 247 DLFPTNLRVLAAALSSTFGRFGGLTGNLMFGFLID--------------GHCLILICTLA 292
++FPT R A +S+ G+ G + G F +L GH L + A
Sbjct: 419 EVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEI---FA 475
Query: 293 AMLLIAGVFSMFLPATGKKELD 314
+ + +F++ +P T K L+
Sbjct: 476 LFMFLGILFTLLIPETKGKSLE 497
>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein. [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 365
Score = 31.5 bits (72), Expect = 0.48
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 2/94 (2%)
Query: 38 AYAAISITVLSFVLPSAQCD-FGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITL 96
+ + + + P Q G S+ GW+ AA LG + G+ G L R +
Sbjct: 221 LFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALM 280
Query: 97 IGALLVDGLC-GIASSVAQYYGVFLALRFINGFA 129
GA+ V GL + + +FL L F G
Sbjct: 281 TGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVG 314
>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters
[Carbohydrate transport and metabolism].
Length = 467
Score = 31.8 bits (73), Expect = 0.50
Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 166 NPEVFSHTLIIGLAC--IPSSLAMPLLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQN 223
+PE+F++ L++ + + P LV K G K + GL+L + + LY+ T +
Sbjct: 269 DPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYF--TPAGS 326
Query: 224 LILSCIFEALTGCCISVVYCIMVDLFP 250
++L + + G + + +
Sbjct: 327 VVLIVVALIIAGVGTGIANPLPWAMVA 353
>gnl|CDD|236879 PRK11195, PRK11195, lysophospholipid transporter LplT; Provisional.
Length = 393
Score = 31.3 bits (72), Expect = 0.62
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 270 LTGNLMFGFLIDGHCLILICTLAAMLLIAGVFSMFLPATG 309
L G ++ G L D H + A + L+A +F++F+P G
Sbjct: 138 LLGTVLGGALADPHAEAALAVCALIYLLAALFNLFIPRLG 177
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 29.9 bits (68), Expect = 0.77
Identities = 21/79 (26%), Positives = 33/79 (41%)
Query: 66 GWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFI 125
G L A LG + S G L D GRK L+ L + L +++ V + RF+
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60
Query: 126 NGFASRPLIPGHPGKVASV 144
GF + + +A +
Sbjct: 61 QGFGAAFALVAGAALIADI 79
>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 14 potential membrane-spanning regions. Members
with known activities include EmrB (multiple drug
resistance efflux pump) in E. coli, FarB (antibacterial
fatty acid resistance) in Neisseria gonorrhoeae, TcmA
(tetracenomycin C resistance) in Streptomyces
glaucescens, etc. In most cases, the efflux pump is
described as having a second component encoded in the
same operon, such as EmrA of E. coli [Cellular
processes, Toxin production and resistance, Transport
and binding proteins, Other].
Length = 485
Score = 30.0 bits (68), Expect = 1.7
Identities = 24/96 (25%), Positives = 39/96 (40%)
Query: 40 AAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGA 99
A + T+++ +P+ D G + S W+ + ML G LA G + + +
Sbjct: 14 AVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLIS 73
Query: 100 LLVDGLCGIASSVAQYYGVFLALRFINGFASRPLIP 135
L + VA + + R I GF PLIP
Sbjct: 74 TFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIP 109
>gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional.
Length = 401
Score = 29.9 bits (68), Expect = 1.9
Identities = 16/51 (31%), Positives = 22/51 (43%)
Query: 75 GMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFI 125
G G WG L+D GRK L+ L + L + + L LRF+
Sbjct: 53 GFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFV 103
>gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport
and metabolism].
Length = 417
Score = 29.5 bits (67), Expect = 2.3
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 45 TVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDG 104
T+ S + + DFG++ KG L A P+L +G L D G + I ++L+
Sbjct: 31 TLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLL 90
Query: 105 LCGIASSVAQY---YGVFLALRFINGFA 129
+ + + A L + + G A
Sbjct: 91 IPCLGLAFAVTYPSTWQLLVIGLLLGLA 118
>gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL;
Provisional.
Length = 392
Score = 29.2 bits (66), Expect = 2.9
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 73 MLGMVFGSYFWGCLADTQGRK-ITLIGAL---LVDGLCGIASSVAQYYGVFLALRFING 127
+ GM F G +AD GRK + + GA + LC +A + + FLA RF+ G
Sbjct: 48 LAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSL----FLAGRFLQG 102
>gnl|CDD|235349 PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.
Length = 474
Score = 29.1 bits (66), Expect = 3.2
Identities = 29/81 (35%), Positives = 34/81 (41%), Gaps = 34/81 (41%)
Query: 89 TQGRKITLIGALLVDGLC-----GIASSVAQYYGVFLALRFINGFAS--RPLI----PGH 137
TQG K+ L ALLVDGL GI VA Y F++ R I PGH
Sbjct: 71 TQGEKLDL--ALLVDGLQAEREQGITIDVAYRY-----------FSTEKRKFIIADTPGH 117
Query: 138 --------PGKVASVCDVSAL 150
G AS CD++ L
Sbjct: 118 EQYTRNMATG--ASTCDLAIL 136
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 27.7 bits (62), Expect = 8.5
Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 15/118 (12%)
Query: 27 YILVIFGGLLYAYAAI----SITVLSFVLPSAQCDF--------GMTSSDKGWLNAAPML 74
Y V L+ A + V+ L +F +SS G + + ++
Sbjct: 23 YWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLV 82
Query: 75 GMVFGSYFWGCLADTQGRKITL--IGALLVDGLCGI-ASSVAQYYGVFLALRFINGFA 129
G G+ F G L+D GRK +L I L V G + ++ A + + R + G
Sbjct: 83 GGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIG 140
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.142 0.440
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,130,340
Number of extensions: 1577391
Number of successful extensions: 2512
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2475
Number of HSP's successfully gapped: 150
Length of query: 314
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 217
Effective length of database: 6,635,264
Effective search space: 1439852288
Effective search space used: 1439852288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (26.5 bits)