RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10938
(314 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 5e-05
Identities = 50/279 (17%), Positives = 86/279 (30%), Gaps = 89/279 (31%)
Query: 6 GEQFDATFENAL-AAAGYGKFHYILVIFGG----------L--LYA-YAAISITVLSFVL 51
FD +AL A G G ++ IFGG L LY Y + V +
Sbjct: 134 KRPFDKKSNSALFRAVGEGNAQ-LVAIFGGQGNTDDYFEELRDLYQTYHVL---VGDLIK 189
Query: 52 PSAQCDFGMTSSD--------KG-----WLNAA----------------PMLGMV-FGSY 81
SA+ + + +G WL P++G++ Y
Sbjct: 190 FSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHY 249
Query: 82 FWGC-------------LADTQGRKITLIGALLVDGLCGIASSVAQYYG-VFLALR--FI 125
L G L+ A+ + S ++ V A+ F
Sbjct: 250 VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI----AETDSWESFFVSVRKAITVLFF 305
Query: 126 NGFASR---PLIPGHPGKVASVCDVSALQPADNSTVATCSGEVNPEVFSHTLIIGLAC-- 180
G P P + + + P S + + S +V + +
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENNEGVP---SPMLSISNLTQEQVQDY---VNKTNSH 359
Query: 181 IPS----SLAMPLLVHKMGAKWFLVAGLVLS-SGVAMAL 214
+P+ ++ LV+ GAK +V+G S G+ + L
Sbjct: 360 LPAGKQVEIS---LVN--GAKNLVVSGPPQSLYGLNLTL 393
Score = 41.6 bits (97), Expect = 3e-04
Identities = 51/310 (16%), Positives = 87/310 (28%), Gaps = 86/310 (27%)
Query: 47 LSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKI-TLIGALLVDGL 105
L +V S+ + LN L F + + L +G I L LL +
Sbjct: 65 LGYV--SSLVEPSKVGQFDQVLNLC--LTE-FENCY---L---EGNDIHALAAKLLQEND 113
Query: 106 CGIASS--VAQYYGVFLALRFINGFASRPLIPGHPGKVASVCDVSALQPA----DNSTVA 159
+ + + + Y A RP SAL A + VA
Sbjct: 114 TTLVKTKELIKNY--ITARIMAK----RPFDKKSN---------SALFRAVGEGNAQLVA 158
Query: 160 TCSGEVNPEVF----------SHTLIIGLACIPSSLAMPLLVHKMGAKWFLVAGL-VLS- 207
G+ N + + H L+ L + L+ + A+ GL +L
Sbjct: 159 IFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW 218
Query: 208 ---SGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLR---------- 254
Y+ + +SC + VV ++ P LR
Sbjct: 219 LENPSNTPDKDYLLSIP----ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS 274
Query: 255 --VLAA---ALSSTFGRFGGLTGN-LMFGFLIDGHCLIL--ICTLAA------------- 293
++ A A + ++ F + F I C +L
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV 334
Query: 294 ---MLLIAGV 300
ML I+ +
Sbjct: 335 PSPMLSISNL 344
Score = 33.1 bits (75), Expect = 0.13
Identities = 45/246 (18%), Positives = 66/246 (26%), Gaps = 99/246 (40%)
Query: 1 MGLDFGEQFDA---TFENA--LAAAGYGKFHYILVI-----------FGGLLYAYAAISI 44
MG+D + A + A YG F IL I FGG I
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYG-FS-ILDIVINNPVNLTIHFGG----EKGKRI 1684
Query: 45 TVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFW----GCLADTQGRKITLIGAL 100
+ G ++K + SY + G L+ TQ T AL
Sbjct: 1685 RENYSAMIFETIVDGKLKTEK----IFKEINEHSTSYTFRSEKGLLSATQ---FTQP-AL 1736
Query: 101 LVDGLCGIASSVAQYYGVFLALRFINGFASRPLIP------GHPGKVASVCDVSALQPAD 154
A F L+ S+ LIP GH S+
Sbjct: 1737 T-------LMEKAA----FEDLK------SKGLIPADATFAGH-----SL---------- 1764
Query: 155 NSTVATCSGEVNPEVFSHTLIIGLACIPSSLAMPL-----LVHKMG--AKWFLVAGLVLS 207
GE ++ LA + + M + +V G + + +
Sbjct: 1765 --------GE-----YA-----ALASL--ADVMSIESLVEVVFYRGMTMQVAVPRDELGR 1804
Query: 208 SGVAMA 213
S M
Sbjct: 1805 SNYGMI 1810
Score = 28.5 bits (63), Expect = 3.4
Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 35/122 (28%)
Query: 125 INGFASRPLIPGHPGKVASVCDVSALQPADNSTVATCSGEVNPEVFSHTL---IIGLACI 181
++ +++RPL H G + + L P + +A+ E F+ L G A
Sbjct: 1 MDAYSTRPLTLSH-GSL----EHVLLVPTASFFIAS----QLQEQFNKILPEPTEGFAAD 51
Query: 182 --PSSLAMPLLVHKMGAKWFL--VAGLVLSSGVAMALYYVQTSTQNLILSCI--FEA--L 233
P++ A L+ K FL V+ LV S ++ C+ FE L
Sbjct: 52 DEPTTPA-ELV-----GK-FLGYVSSLVEPSK--------VGQFDQVLNLCLTEFENCYL 96
Query: 234 TG 235
G
Sbjct: 97 EG 98
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug
transporter; 3.50A {Escherichia coli}
Length = 375
Score = 42.6 bits (101), Expect = 8e-05
Identities = 17/101 (16%), Positives = 38/101 (37%)
Query: 29 LVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLAD 88
L++ LL A ++ T+ + D + + A +L F+G ++D
Sbjct: 1 LLLMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISD 60
Query: 89 TQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFA 129
GR+ ++ + + L + + V +A + G
Sbjct: 61 RVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMG 101
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
major facilitator superfamily, secondary active membrane
transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Length = 451
Score = 41.2 bits (97), Expect = 3e-04
Identities = 18/119 (15%), Positives = 39/119 (32%), Gaps = 5/119 (4%)
Query: 22 YGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSY 81
Y + + + + YA + + +P + G + D G+ + + F +
Sbjct: 22 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKF 80
Query: 82 FWGCLADTQGRKITLIGALLVDGLC----GIASSVAQYYGVFLALRFINGFASRPLIPG 136
G ++D ++ L L++ G V L F+ G+ P
Sbjct: 81 IMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPP 139
Score = 34.3 bits (79), Expect = 0.049
Identities = 19/126 (15%), Positives = 45/126 (35%), Gaps = 3/126 (2%)
Query: 189 LLVHKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDL 248
+ GA LV + + + T ++I + L + ++ ++L
Sbjct: 315 VFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALEL 374
Query: 249 FPTNLRVLAAALSSTFGRFGG-LTGNLMFGFLID--GHCLILICTLAAMLLIAGVFSMFL 305
P AA + FG GG + + + G+ +D G + + +L + + +
Sbjct: 375 APKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 434
Query: 306 PATGKK 311
++
Sbjct: 435 IGEKRR 440
Score = 30.0 bits (68), Expect = 0.96
Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 193 KMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTG----CCISVVYCIMVDL 248
+ + FL AGL+L++ V + + +V +T ++ + + L G MV
Sbjct: 88 RSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHW 147
Query: 249 FPTNLRVLAAALSSTFGRFGGLTGNLMFGFLI 280
+ R ++ + GG L+F +
Sbjct: 148 WSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM 179
Score = 29.6 bits (67), Expect = 1.4
Identities = 10/77 (12%), Positives = 19/77 (24%), Gaps = 5/77 (6%)
Query: 58 FGMTSSDKGWLNAAPMLGMVFGSYFWGCLAD-----TQGRKITLIGALLVDGLCGIASSV 112
W + G+ G ++D +G L+ +
Sbjct: 283 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNP 342
Query: 113 AQYYGVFLALRFINGFA 129
A V + + GF
Sbjct: 343 AGNPTVDMICMIVIGFL 359
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 38.7 bits (90), Expect = 0.002
Identities = 23/143 (16%), Positives = 37/143 (25%), Gaps = 24/143 (16%)
Query: 143 SVCDVSALQPADNSTVATCSGEVNP--EVFSHTLIIGLACIPSSLAMPLLVHKMGAKWFL 200
++ D+ ST A E E+ H + L H GA
Sbjct: 1333 TIDDLGVASFHGTSTKANDKNESATINEMMKHLGRSEGNPVIGVFQKFLTGHPKGA---- 1388
Query: 201 VAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPT-----NLRV 255
AG + +G L N + + L +
Sbjct: 1389 -AGAWMMNGALQILNS-GIIPGNRNADNVDKILEQF----------EYVLYPSKTLKTDG 1436
Query: 256 LAAALSSTFGRFGGLTGNLMFGF 278
+ A ++FG FG G +
Sbjct: 1437 VRAVSITSFG-FGQKGGQAIVVH 1458
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.005
Identities = 39/274 (14%), Positives = 81/274 (29%), Gaps = 79/274 (28%)
Query: 50 VLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLADTQGRKITLIGALLVDGLCGIA 109
+L + D + S D ++ L FW L Q ++ + + L
Sbjct: 45 ILSKEEIDHIIMSKDA--VSGTLRL-------FW-TLLSKQEE---MVQKFVEEVL---- 87
Query: 110 SSVAQYYGVFLALRFINGFASRPLIPGHPGKVASVCDVSALQPADNSTVATCSGEVN-PE 168
Y FL + P ++ + N V+ +
Sbjct: 88 ---RINYK-FLMSPI----KTEQRQPSMMTRMY----IEQRDRLYNDNQVFAKYNVSRLQ 135
Query: 169 VFSHTLIIGLACIPSSL--AMPLLVHKM-GA-KWFLVAGLVLSSGVAMAL----YYV--- 217
+ L L L A +L+ + G+ K ++ + LS V + +++
Sbjct: 136 PY-LKLRQAL----LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 218 QTSTQNLILSCIFEALTGCC--ISVVYCIMVDLFPTNLRVLAAALSSTFGRFGGLTGNLM 275
++ +L E L I + D +N+++ ++ + R L+
Sbjct: 191 NCNSPETVL----EMLQKLLYQIDPNWTSRSD-HSSNIKLRIHSIQAELRR-------LL 238
Query: 276 F------GFLI-------------DGHCLILICT 290
L+ + C IL+ T
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei
transport protein; HET: BNG; 3.14A {Escherichia coli}
PDB: 3o7p_A*
Length = 438
Score = 34.5 bits (79), Expect = 0.042
Identities = 23/115 (20%), Positives = 39/115 (33%), Gaps = 3/115 (2%)
Query: 18 AAAGYGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMV 77
AG + + I L+ A++ + +LP Q F +T+ G + +A G
Sbjct: 16 KDAGQSRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYF 75
Query: 78 FGSYFWGCLADTQGRKITLIGALLVDG---LCGIASSVAQYYGVFLALRFINGFA 129
G L K +I L + ++ Y +FL FI
Sbjct: 76 IIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAG 130
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+
symport, sugar transport, transmembrane, formylation;
2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A*
1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Length = 417
Score = 31.8 bits (72), Expect = 0.24
Identities = 14/128 (10%), Positives = 35/128 (27%), Gaps = 3/128 (2%)
Query: 24 KFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFW 83
++ +F + L ++ SD G + AA L + +
Sbjct: 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDIN---HISKSDTGIIFAAISLFSLLFQPLF 63
Query: 84 GCLADTQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFASRPLIPGHPGKVAS 143
G L+D G + L+ + + + + + + + A
Sbjct: 64 GLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAP 123
Query: 144 VCDVSALQ 151
+ +
Sbjct: 124 AVEAFIEK 131
>3sbm_A DISD protein, DSZD; transferase; HET: P6G; 1.35A {Sorangium
cellulosum} PDB: 3rgi_A
Length = 281
Score = 27.1 bits (61), Expect = 7.9
Identities = 7/22 (31%), Positives = 8/22 (36%)
Query: 1 MGLDFGEQFDATFENALAAAGY 22
MG + F A A GY
Sbjct: 16 MGRALFDAFPALTARADGVLGY 37
>3g87_A Malonyl COA-acyl carrier protein transacylase; ssgcid, niaid,
decode biostructures, dried seaweed, acyltran
transferase; 2.30A {Burkholderia pseudomallei}
Length = 394
Score = 26.9 bits (60), Expect = 9.9
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 1 MGLDFGEQFDATFENALAAAGY 22
MG ++F A A GY
Sbjct: 21 MGGALFDRFADLTAQADAVLGY 42
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.142 0.440
Gapped
Lambda K H
0.267 0.0847 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,849,781
Number of extensions: 291230
Number of successful extensions: 626
Number of sequences better than 10.0: 1
Number of HSP's gapped: 618
Number of HSP's successfully gapped: 26
Length of query: 314
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 221
Effective length of database: 4,105,140
Effective search space: 907235940
Effective search space used: 907235940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (25.5 bits)