RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10938
         (314 letters)



>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score = 47.8 bits (112), Expect = 8e-07
 Identities = 18/128 (14%), Positives = 40/128 (31%), Gaps = 5/128 (3%)

Query: 22  YGKFHYILVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSY 81
           Y +  + + +     YA   +     +  +P    + G +  D G+  +   +   F  +
Sbjct: 19  YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKF 77

Query: 82  FWGCLADTQGRKITLIGALLVDGL----CGIASSVAQYYGVFLALRFINGFASRPLIPGH 137
             G ++D    ++ L   L++        G          V   L F+ G+      P  
Sbjct: 78  IMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPC 137

Query: 138 PGKVASVC 145
              +    
Sbjct: 138 GRTMVHWW 145



 Score = 34.3 bits (77), Expect = 0.018
 Identities = 21/121 (17%), Positives = 42/121 (34%), Gaps = 1/121 (0%)

Query: 192 HKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPT 251
              GA       LV  + +   +      T ++I   +   L    + ++    ++L P 
Sbjct: 315 GNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK 374

Query: 252 NLRVLAAALSSTFGRFGG-LTGNLMFGFLIDGHCLILICTLAAMLLIAGVFSMFLPATGK 310
                AA  +  FG  GG +  + + G+ +D         +     I  V  + +   G+
Sbjct: 375 KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGE 434

Query: 311 K 311
           K
Sbjct: 435 K 435


>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
           562]}
          Length = 417

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 18/134 (13%), Positives = 38/134 (28%)

Query: 29  LVIFGGLLYAYAAISITVLSFVLPSAQCDFGMTSSDKGWLNAAPMLGMVFGSYFWGCLAD 88
             +FG   + Y  I      F          ++ SD G + AA  L  +     +G L+D
Sbjct: 9   FWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSD 68

Query: 89  TQGRKITLIGALLVDGLCGIASSVAQYYGVFLALRFINGFASRPLIPGHPGKVASVCDVS 148
             G +  L+  +    +      +  +  +      +        +       A   +  
Sbjct: 69  KLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAF 128

Query: 149 ALQPADNSTVATCS 162
             + +  S      
Sbjct: 129 IEKVSRRSNFEFGR 142



 Score = 27.8 bits (60), Expect = 2.1
 Identities = 11/123 (8%), Positives = 39/123 (31%), Gaps = 1/123 (0%)

Query: 192 HKMGAKWFLVAGLVLSSGVAMALYYVQTSTQNLILSCIFEALTGCCISVVYCIMVDLFPT 251
           +++G K  L+    + S   +   +  ++ + +IL  +        +   +  +   F  
Sbjct: 284 NRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEV 343

Query: 252 NLRVLAAALSSTFGR-FGGLTGNLMFGFLIDGHCLILICTLAAMLLIAGVFSMFLPATGK 310
                   +   F +    +  +++ G + +         +  ++ +          +G 
Sbjct: 344 RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP 403

Query: 311 KEL 313
             L
Sbjct: 404 GPL 406


>d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of
          cytochrome bc1 complex (Ubiquinol-cytochrome c
          reductase), transmembrane region {Cow (Bos taurus)
          [TaxId: 9913]}
          Length = 69

 Score = 25.5 bits (56), Expect = 1.9
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 9  FDATFENALAAAGYGKFHYILVIFGGLLYAYAAISI--TVLSFVLPSA 54
           D+T  +  ++     F Y++     +  AYAA ++    +S +  SA
Sbjct: 19 LDSTKSSKESSEARKGFSYLVTATTTVGVAYAAKNVVSQFVSSMSASA 66


>d1ig8a1 c.55.1.3 (A:18-224) Hexokinase {Baker's yeast
           (Saccharomyces cerevisiae), pII [TaxId: 4932]}
          Length = 207

 Score = 26.4 bits (58), Expect = 4.0
 Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 2/45 (4%)

Query: 218 QTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVLAAALSS 262
           +     +I   + +  TG        I  DL  TNLRV+   L  
Sbjct: 42  KGGNIPMIPGWVMDFPTGKESGDFLAI--DLGGTNLRVVLVKLGG 84


>d1bdga1 c.55.1.3 (A:13-222) Hexokinase {Blood fluke (Schistosoma
           mansoni) [TaxId: 6183]}
          Length = 208

 Score = 25.6 bits (56), Expect = 8.0
 Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%)

Query: 218 QTSTQNLILSCIFEALTGCCISVVYCIMVDLFPTNLRVL 256
           + S+  +  S + +   G        +  DL  TN RVL
Sbjct: 45  EKSSIKMFPSYVTKTPNGTETGNFLAL--DLGGTNYRVL 81


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.142    0.440 

Gapped
Lambda     K      H
   0.267   0.0654    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,138,534
Number of extensions: 49587
Number of successful extensions: 136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 14
Length of query: 314
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 229
Effective length of database: 1,240,546
Effective search space: 284085034
Effective search space used: 284085034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.4 bits)