BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10939
         (101 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2HRJ|A Chain A, Nmr Solution Structure Of The F2 Subdomain Of Talin
          Length = 121

 Score = 28.1 bits (61), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 51 KAQSKIGSLDNVKHKPGGGEKKIFDDKDYLKQK 83
          + Q + G  +  KHKPG  E K F  K+Y+KQK
Sbjct: 54 QCQIQFGPHNEQKHKPGFLELKDFLPKEYIKQK 86


>pdb|1MK7|B Chain B, Crystal Structure Of An Integrin Beta3-Talin Chimera
 pdb|1MK7|D Chain D, Crystal Structure Of An Integrin Beta3-Talin Chimera
 pdb|1MK9|B Chain B, Crystal Structure Of An Integrin Beta3-Talin Chimera
 pdb|1MK9|D Chain D, Crystal Structure Of An Integrin Beta3-Talin Chimera
 pdb|1MK9|F Chain F, Crystal Structure Of An Integrin Beta3-Talin Chimera
 pdb|1MK9|H Chain H, Crystal Structure Of An Integrin Beta3-Talin Chimera
          Length = 192

 Score = 27.7 bits (60), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 51 KAQSKIGSLDNVKHKPGGGEKKIFDDKDYLKQK 83
          + Q + G  +  KHKPG  E K F  K+Y+KQK
Sbjct: 34 QCQIQFGPHNEQKHKPGFLELKDFLPKEYIKQK 66


>pdb|1MIX|A Chain A, Crystal Structure Of A Ferm Domain Of Talin
          Length = 206

 Score = 27.7 bits (60), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 51 KAQSKIGSLDNVKHKPGGGEKKIFDDKDYLKQK 83
          + Q + G  +  KHKPG  E K F  K+Y+KQK
Sbjct: 48 QCQIQFGPHNEQKHKPGFLELKDFLPKEYIKQK 80


>pdb|1MIZ|B Chain B, Crystal Structure Of An Integrin Beta3-Talin Chimera
          Length = 201

 Score = 27.7 bits (60), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 51 KAQSKIGSLDNVKHKPGGGEKKIFDDKDYLKQK 83
          + Q + G  +  KHKPG  E K F  K+Y+KQK
Sbjct: 43 QCQIQFGPHNEQKHKPGFLELKDFLPKEYIKQK 75


>pdb|3G9W|A Chain A, Crystal Structure Of Talin2 F2-f3 In Complex With The
          Integrin Beta1d Cytoplasmic Tail
 pdb|3G9W|B Chain B, Crystal Structure Of Talin2 F2-f3 In Complex With The
          Integrin Beta1d Cytoplasmic Tail
          Length = 223

 Score = 27.7 bits (60), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 21/36 (58%)

Query: 50 IKAQSKIGSLDNVKHKPGGGEKKIFDDKDYLKQKAA 85
           +AQ + G     KHKPG  + K F  K+Y+KQ+ A
Sbjct: 58 FQAQIQFGPHVEHKHKPGFLDLKEFLPKEYIKQRGA 93


>pdb|3RRL|A Chain A, Complex Structure Of 3-Oxoadipate Coa-Transferase Subunit
           A And B From Helicobacter Pylori 26695
 pdb|3RRL|C Chain C, Complex Structure Of 3-Oxoadipate Coa-Transferase Subunit
           A And B From Helicobacter Pylori 26695
          Length = 235

 Score = 26.9 bits (58), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 10/84 (11%)

Query: 1   MVDSYVNENQLFNGQIEEQKLDIKAQSKIGSLDNVKHKPGGGIEEQKLDIKAQSKIGSLD 60
           ++ SYV EN++F  Q    ++++    + G+L    H  G GI          + +G+L 
Sbjct: 76  IIASYVGENKIFESQXLNGEIEVVLTPQ-GTLAENLHAGGAGIPAY----YTPTGVGTL- 129

Query: 61  NVKHKPGGGEKKIFDDKDYLKQKA 84
                  G E + F+ K+Y+ ++A
Sbjct: 130 ----IAQGKESREFNGKEYILERA 149


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.306    0.130    0.355 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,342,166
Number of Sequences: 62578
Number of extensions: 137430
Number of successful extensions: 150
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 142
Number of HSP's gapped (non-prelim): 12
length of query: 101
length of database: 14,973,337
effective HSP length: 67
effective length of query: 34
effective length of database: 10,780,611
effective search space: 366540774
effective search space used: 366540774
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 45 (21.9 bits)